Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 148 of 344
Found at i:49281658 original size:49 final size:49
Alignment explanation
Indices: 49281600--49281704 Score: 165
Period size: 49 Copynumber: 2.1 Consensus size: 49
49281590 AACATGTTCA
* * *
49281600 CACACTTGTCCTATCAGAATGGTTGAGGAACATAAAACATGTTCTCGCC
1 CACACTTGTCCTATCAGAATGGGTAAGGAACATAAAACATGTTCTCACC
* *
49281649 CACACTTGTCTTATCAGAATGGGTAAGGAACTTAAAACATGTTCTCACC
1 CACACTTGTCCTATCAGAATGGGTAAGGAACATAAAACATGTTCTCACC
49281698 CACACTT
1 CACACTT
49281705 ATGTTTGATA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (49 bp):
CACACTTGTCCTATCAGAATGGGTAAGGAACATAAAACATGTTCTCACC
Found at i:49283341 original size:3 final size:3
Alignment explanation
Indices: 49283333--49283366 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
49283323 TCCTGACATT
* *
49283333 TTC TTC TTC TTC TTC TTC TTC TAC TTC TTT TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
49283367 GATTCTATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.03, C:0.29, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:49283917 original size:18 final size:18
Alignment explanation
Indices: 49283881--49283918 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
49283871 AAGGCTAGGC
*
49283881 TGTGAGCCAAATTGGGCA
1 TGTGAGCCAAATTGAGCA
49283899 TGTGAGCCAACA-TGAGCA
1 TGTGAGCCAA-ATTGAGCA
49283917 TG
1 TG
49283919 ACACATGGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.29, C:0.18, G:0.32, T:0.21
Consensus pattern (18 bp):
TGTGAGCCAAATTGAGCA
Found at i:49291538 original size:42 final size:42
Alignment explanation
Indices: 49291479--49291590 Score: 145
Period size: 42 Copynumber: 2.7 Consensus size: 42
49291469 TACCATACCA
*
49291479 ATGCCATATCCCAGATATGGTCTTACACGAAATGTCAT-ATCC
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAAT-C
* * * * *
49291521 ATGCCATATCCTAGATATGGTTTTACATGAAATCTTATAATG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAATC
*
49291563 ATGCCATATCCCAGATCTGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
49291591 ATAGCCTCGG
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 57 0.97
43 2 0.03
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAATC
Found at i:49300076 original size:12 final size:12
Alignment explanation
Indices: 49300059--49300083 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
49300049 ATGTATGAGT
49300059 TTGAGTTGAAAA
1 TTGAGTTGAAAA
49300071 TTGAGTTGAAAA
1 TTGAGTTGAAAA
49300083 T
1 T
49300084 AATATTGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.24, T:0.36
Consensus pattern (12 bp):
TTGAGTTGAAAA
Found at i:49303988 original size:50 final size:50
Alignment explanation
Indices: 49303908--49304105 Score: 227
Period size: 50 Copynumber: 4.0 Consensus size: 50
49303898 GACCTTGTAT
* * * *
49303908 ATATTCGACCACATAGGTATGTACATATGTGATGTTATATTGGATTTTGA
1 ATATTCGACCATATAGGTATGCACATATGTGATATTATATTTGATTTTGA
* * *
49303958 ATATTCGACCATGA-AGGTATGCACAAATGTGATATTATATTTGAATTTGT
1 ATATTCGACCAT-ATAGGTATGCACATATGTGATATTATATTTGATTTTGA
* * * * * * * * *
49304008 ATATTCGACTATATAAGTAAGTACATATTTGATGTTAAATTTGATCTTGC
1 ATATTCGACCATATAGGTATGCACATATGTGATATTATATTTGATTTTGA
*
49304058 ATATTCGGCCATATAGGTATGCACATATGTGATATTATATTTGATTTT
1 ATATTCGACCATATAGGTATGCACATATGTGATATTATATTTGATTTT
49304106 CTATAATCGA
Statistics
Matches: 119, Mismatches: 27, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
49 1 0.01
50 117 0.98
51 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (50 bp):
ATATTCGACCATATAGGTATGCACATATGTGATATTATATTTGATTTTGA
Found at i:49304080 original size:100 final size:100
Alignment explanation
Indices: 49303907--49304118 Score: 282
Period size: 100 Copynumber: 2.1 Consensus size: 100
49303897 TGACCTTGTA
* * * *
49303907 TATATTCGACCACATAGGTATGTACATATGTGATGTTATATTGGATTTTGAATATTCGACCATGA
1 TATATTCGACCACATAAGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGACCATGA
*
49303972 AGGTATGCACAAATGTGATATTATATTTGAATTTG
66 AGGTATGCACAAATGTGATATTATATTTGAATTTC
* * * * * *
49304007 TATATTCGACTATATAAGTAAGTACATATTTGATGTTAAATTTGATCTTGCATATTCGGCCAT-A
1 TATATTCGACCACATAAGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGACCATGA
* *
49304071 TAGGTATGCACATATGTGATATTATATTTGATTTTC
66 -AGGTATGCACAAATGTGATATTATATTTGAATTTC
*
49304107 TATAATCGACCA
1 TATATTCGACCA
49304119 AATGAGTGAT
Statistics
Matches: 96, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
99 1 0.01
100 95 0.99
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (100 bp):
TATATTCGACCACATAAGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGACCATGA
AGGTATGCACAAATGTGATATTATATTTGAATTTC
Found at i:49305554 original size:27 final size:27
Alignment explanation
Indices: 49305524--49305701 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
49305514 ATATTGAGTC
* * * *
49305524 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
49305551 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
49305578 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
49305606 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
49305633 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
49305660 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
49305687 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
49305702 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:49305663 original size:82 final size:81
Alignment explanation
Indices: 49305545--49305700 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
49305535 TGCTATATAA
* *
49305545 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
49305610 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
49305627 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
49305691 CACTTAGTGC
65 CACTTAGTGC
49305701 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:49309381 original size:46 final size:47
Alignment explanation
Indices: 49309204--49309381 Score: 170
Period size: 46 Copynumber: 3.8 Consensus size: 47
49309194 ATTGTTGGCT
* * * * *
49309204 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATG-GGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCTACGA-GACGAGAAGCC
* * *
49309250 AGCGTAAGACCATGTCTAGGACATGGCATCGGC-ATTGAGACGAGAA-CT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCTA-CGAGACGAGAAGCC
* *
49309298 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGAC-ATAAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGG-CTACGAGACGAGAAGCC
*
49309344 AGTGTAAGACATGTCTACGACATGCATCGGCTACGAGA
1 AGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGA
49309382 TGATATTTAG
Statistics
Matches: 109, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
45 5 0.05
46 54 0.50
47 28 0.26
48 19 0.17
49 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (47 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGACGAGAAGCC
Found at i:49316977 original size:93 final size:94
Alignment explanation
Indices: 49316820--49317035 Score: 246
Period size: 93 Copynumber: 2.3 Consensus size: 94
49316810 TGAGAGCTAG
* * * * *
49316820 TGTAAGACCATGTCTAGGACATGGCATTGGCATTAAGACGA-GA-A-CTAGTGTAAGACATGTCT
1 TGTAAGACCATGTCTGGGACATGGCATCGGC--TACGA-GATGATAGTTAGTATAAGACATGTCT
* *
49316882 GGGACAT-GCATCGACCTCGAGACGTAAGCCAG
63 GGGACATGGCATCGA-ATCGAGACGTAAGCCAA
49316914 TGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGATAGTTAGTATAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATGATAGTTAGTATAAGA-CATGTCTGG
* * * *
49316977 GACATGGCATTGAATTGAGATGTGAGCCAA
65 GACATGGCATCGAATCGAGACGTAAGCCAA
49317007 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
49317036 ACACTTTACC
Statistics
Matches: 104, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
89 2 0.02
90 6 0.06
91 1 0.01
92 16 0.15
93 46 0.44
94 27 0.26
95 6 0.06
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.24
Consensus pattern (94 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATGATAGTTAGTATAAGACATGTCTGGG
ACATGGCATCGAATCGAGACGTAAGCCAA
Found at i:49316997 original size:47 final size:47
Alignment explanation
Indices: 49316814--49317036 Score: 188
Period size: 47 Copynumber: 4.8 Consensus size: 47
49316804 ACATTATGAG
* * * **
49316814 AGCTAGTGTAAGACCATGTCTAGGACATGGCATTGGCATTAAGACG-A
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCA-TCGAATCGAGACGTA
* *
49316861 GAACTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTCGAGACGTA
1 -AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-ATCGAGACGTA
* ** *
49316908 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATG-A
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGAAT-CGAGACGTA
* * * * * *
49316953 TAGTTAGTATAAGACCATGTCTGGGACATGGCATTGAATTGAGATGTG
1 -AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGAATCGAGACGTA
* *
49317001 AGCCAATGTAAGACCATGTCTGGGACATGGCATCGA
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA
49317037 CACTTTACCC
Statistics
Matches: 144, Mismatches: 24, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
45 5 0.03
46 56 0.39
47 65 0.45
48 18 0.12
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (47 bp):
AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGAATCGAGACGTA
Found at i:49317029 original size:140 final size:141
Alignment explanation
Indices: 49316772--49317037 Score: 358
Period size: 140 Copynumber: 1.9 Consensus size: 141
49316762 ATTGTTGGCT
* * *
49316772 AGTGCAAGACATGTTTGGGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATGTCTAG
1 AGTGCAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAGTATAAGACCATGTCTAG
* * *
49316837 GACATGGCATTGGCATTAAGACGAGAACTAGTGTAAGACATGTCTGGGACAT-GCATCGACCTCG
66 GACATGGCATTGGAATTAAGACGAGAACCAATGTAAGACATGTCTGGGACATGGCATCGACCTCG
49316901 AGACGTAAGCC
131 AGACGTAAGCC
* * * * *
49316912 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTTAGTATAAGACCATGTCTG
1 AGTGCAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGAGCTAGTATAAGACCATGTCTA
* * * *
49316976 GGACATGGCATT-GAATTGAGATGTGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGAC
65 GGACATGGCATTGGAATTAAGACGAGAACCAATGTAAGA-CATGTCTGGGACATGGCATCGAC
49317038 ACTTTACCCA
Statistics
Matches: 108, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
139 19 0.18
140 80 0.74
141 9 0.08
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (141 bp):
AGTGCAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAGTATAAGACCATGTCTAG
GACATGGCATTGGAATTAAGACGAGAACCAATGTAAGACATGTCTGGGACATGGCATCGACCTCG
AGACGTAAGCC
Found at i:49324213 original size:50 final size:50
Alignment explanation
Indices: 49324150--49324334 Score: 232
Period size: 50 Copynumber: 3.7 Consensus size: 50
49324140 TAGGGTTATT
* * *
49324150 TGTGATCCAATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATA
1 TGTGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATA
*
49324200 TGTGATCCCATGTAAGACCAT-TTTCGGGACATGGCATTGGCATCGATATA
1 TGTGATCCCATGTAAGACCATATCT-GGGACATGGCATTGGCATCGATATA
* * * *
49324250 TGTGATCCCATGTACGACCATATTTGGGATATGGCATTGGCATTGATATA
1 TGTGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATA
****
49324300 --TGATTTTGTGTAAGACCATATCTGGGACATGGCAT
1 TGTGATCCCATGTAAGACCATATCTGGGACATGGCAT
49324335 CGATATGAGA
Statistics
Matches: 120, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
48 28 0.23
49 2 0.02
50 87 0.73
51 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (50 bp):
TGTGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATA
Found at i:49324593 original size:16 final size:17
Alignment explanation
Indices: 49324572--49324605 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
49324562 AAGCATTGGC
*
49324572 TTCATGAT-ATTATGAA
1 TTCATGATCACTATGAA
49324588 TTCATGATCACTATGAA
1 TTCATGATCACTATGAA
49324605 T
1 T
49324606 GTGACTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (17 bp):
TTCATGATCACTATGAA
Found at i:49330886 original size:50 final size:50
Alignment explanation
Indices: 49330829--49330944 Score: 189
Period size: 50 Copynumber: 2.3 Consensus size: 50
49330819 TAGGGTTATT
* *
49330829 TGTGATCCCATGTAAGACCATGTCT-GGAGTATGACATTGGCATCGATATA
1 TGTGATCCCATGTAAGACCATGTCTGGGA-CATGACATTCGCATCGATATA
*
49330879 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTCGCATCGATATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGACATTCGCATCGATATA
49330929 TGTGATCCCATGTAAG
1 TGTGATCCCATGTAAG
49330945 TGCTGGAGCA
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
50 59 0.95
51 3 0.05
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (50 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGACATTCGCATCGATATA
Found at i:49334745 original size:361 final size:362
Alignment explanation
Indices: 49334052--49334777 Score: 1436
Period size: 361 Copynumber: 2.0 Consensus size: 362
49334042 TGACACACAA
*
49334052 TTTGCCCCATGGGCATATGCTCCGGCCATGTGTCCCATGCACCTTGATTTTGAAAAAAAAAATAG
1 TTTGCCCCATGGGCATATGCTCCAGCCATGTGTCCCATGCACCTTGATTTTGAAAAAAAAAATAG
49334117 AATGTCCAGGATTCAACACACAGGTAGAGACACGGGCGTGTGTCTTAGCCGTGTGGAGGACACGG
66 AATGTCCAGGATTCAACACACAGGTAGAGACACGGGCGTGTGTCTTAGCCGTGTGGAGGACACGG
49334182 CCTAAACACACGGGCATGTGATTTGGCCATGTAACCTCATTTTTATGATGATGTCATAAACATAA
131 CCTAAACACACGGGCATGTGATTTGGCCATGTAACCTCATTTTTATGATGATGTCATAAACATAA
49334247 TGCACCCTAAGATGGACACGACTTGAAGCATGGGCGTGTGATATGCCACATGGGCGTGTCCCTTC
196 TGCACCCTAAGATGGACACGACTTGAAGCATGGGCGTGTGATATGCCACATGGGCGTGTCCCTTC
49334312 ACCCACACGGGCGTGTGGATCTGTTTCATGATGAAAATTTTCTAAGTTTCCCCAAAAGTTTTCAA
261 ACCCACACGGGCGTGTGGATCTGTTTCATGATGAAAATTTTCTAAGTTTCCCCAAAAGTTTTCAA
49334377 AGTTCTCGGTTTAGTCCCAAACCACTCCAAACACATG
326 AGTTCTCGGTTTAGTCCCAAACCACTCCAAACACATG
49334414 TTTGCCCCATGGGCATATGCTCCAGCCATGTGTCCCATGCACCTTGATTTTGAAAAAAAAAATAG
1 TTTGCCCCATGGGCATATGCTCCAGCCATGTGTCCCATGCACCTTGATTTTGAAAAAAAAAATAG
49334479 AATGTCCAGGATTCAACACACAGGTAGAGACACGGGCGTGTGTCTTAGCCGTGTGGAGGACACGG
66 AATGTCCAGGATTCAACACACAGGTAGAGACACGGGCGTGTGTCTTAGCCGTGTGGAGGACACGG
49334544 CCTAAACACACGGGCATGTGATTTGGCCATGTAACCTCA-TTTTATGATGATGTCATAAACATAA
131 CCTAAACACACGGGCATGTGATTTGGCCATGTAACCTCATTTTTATGATGATGTCATAAACATAA
49334608 TGCACCCTAAGATGGACACGACTTGAAGCATGGGCGTGTGATATGCCACATGGGCGTGTCCCTTC
196 TGCACCCTAAGATGGACACGACTTGAAGCATGGGCGTGTGATATGCCACATGGGCGTGTCCCTTC
49334673 ACCCACACGGGCGTGTGGATCTGTTTCATGATGAAAATTTTCTAAGTTTCCCCAAAAGTTTTCAA
261 ACCCACACGGGCGTGTGGATCTGTTTCATGATGAAAATTTTCTAAGTTTCCCCAAAAGTTTTCAA
49334738 AGTTCTCGGTTTAGTCCCAAACCACTCCAAACACATG
326 AGTTCTCGGTTTAGTCCCAAACCACTCCAAACACATG
49334775 TTT
1 TTT
49334778 TGGGCCTCGT
Statistics
Matches: 363, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
361 195 0.54
362 168 0.46
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (362 bp):
TTTGCCCCATGGGCATATGCTCCAGCCATGTGTCCCATGCACCTTGATTTTGAAAAAAAAAATAG
AATGTCCAGGATTCAACACACAGGTAGAGACACGGGCGTGTGTCTTAGCCGTGTGGAGGACACGG
CCTAAACACACGGGCATGTGATTTGGCCATGTAACCTCATTTTTATGATGATGTCATAAACATAA
TGCACCCTAAGATGGACACGACTTGAAGCATGGGCGTGTGATATGCCACATGGGCGTGTCCCTTC
ACCCACACGGGCGTGTGGATCTGTTTCATGATGAAAATTTTCTAAGTTTCCCCAAAAGTTTTCAA
AGTTCTCGGTTTAGTCCCAAACCACTCCAAACACATG
Found at i:49348666 original size:66 final size:64
Alignment explanation
Indices: 49348574--49348763 Score: 185
Period size: 61 Copynumber: 2.9 Consensus size: 64
49348564 AATATTTTAT
*** * *
49348574 TATTAAATTTAATTTAATAAACATCTTGATAGTATTTATTGATTAATATTAAAGCGATTATCTTA
1 TATTAAATTTAATTTAATATTTATCTTGATAGTATTTATTAATTAATATTAAAG-GATTAT-TGA
49348639 A
64 A
** *
49348640 TATTAAATTTAATTTAATATTTATCTTG-TAGATAAGTATTCTATTAAT-TT--A--ATTGATTG
1 TATTAAATTTAATTTAATATTTATCTTGATAG-TATTTATT-AATTAATATTAAAGGATT-ATTG
49348699 AA
63 AA
49348701 TATTAAATTTAATTTAATATTTATCTTGATAAGTATTATATTAATTTAATATTAAAGTGATTA
1 TATTAAATTTAATTTAATATTTATCTTGAT-AGTATT-TATTAA-TTAATATTAAAG-GATTA
49348764 AGTTTAATCA
Statistics
Matches: 101, Mismatches: 10, Indels: 24
0.75 0.07 0.18
Matches are distributed among these distances:
61 34 0.34
62 6 0.06
63 11 0.11
64 3 0.03
65 3 0.03
66 34 0.34
67 6 0.06
68 1 0.01
69 3 0.03
ACGTcount: A:0.40, C:0.04, G:0.07, T:0.49
Consensus pattern (64 bp):
TATTAAATTTAATTTAATATTTATCTTGATAGTATTTATTAATTAATATTAAAGGATTATTGAA
Found at i:49348704 original size:61 final size:58
Alignment explanation
Indices: 49348638--49348750 Score: 190
Period size: 61 Copynumber: 1.9 Consensus size: 58
49348628 CGATTATCTT
*
49348638 AATATTAAATTTAATTTAATATTTATCTTGTAGATAAGTATTCTATTAATTTAATTGATTG
1 AATATTAAATTTAATTTAATATTTATC-T-T-GATAAGTATTATATTAATTTAATTGATTG
49348699 AATATTAAATTTAATTTAATATTTATCTTGATAAGTATTATATTAATTTAAT
1 AATATTAAATTTAATTTAATATTTATCTTGATAAGTATTATATTAATTTAAT
49348751 ATTAAAGTGA
Statistics
Matches: 51, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
58 22 0.43
59 1 0.02
60 1 0.02
61 27 0.53
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (58 bp):
AATATTAAATTTAATTTAATATTTATCTTGATAAGTATTATATTAATTTAATTGATTG
Found at i:49348764 original size:58 final size:61
Alignment explanation
Indices: 49348638--49348771 Score: 188
Period size: 58 Copynumber: 2.2 Consensus size: 61
49348628 CGATTATCTT
* *
49348638 AATATTAAATTTAATTTAATATTTATCTTGTAGATAAGTATTCTATTAATTTAATTGATTG
1 AATATTAAATTTAATTTAATATTTATCTTGTAGATAAGTATTATATTAATTTAATTGATTA
49348699 AATATTAAATTTAATTTAATATTTATC-T-T-GATAAGTATTATATTAATTTAA-T-ATTA
1 AATATTAAATTTAATTTAATATTTATCTTGTAGATAAGTATTATATTAATTTAATTGATTA
*
49348755 AAGTGATTAAGTTTAAT
1 AA-T-ATTAAATTTAAT
49348772 CATAGTTGAA
Statistics
Matches: 68, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
56 5 0.07
57 2 0.03
58 32 0.47
59 1 0.01
60 1 0.01
61 27 0.40
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.50
Consensus pattern (61 bp):
AATATTAAATTTAATTTAATATTTATCTTGTAGATAAGTATTATATTAATTTAATTGATTA
Found at i:49350457 original size:20 final size:20
Alignment explanation
Indices: 49350345--49350461 Score: 83
Period size: 20 Copynumber: 5.9 Consensus size: 20
49350335 TTGTATGAGA
* *
49350345 TTGCACTTCGATGCCTCTGT
1 TTGCACTTTGGTGCCTCTGT
*
49350365 TTGCACTTTGGTGCCTCT-A
1 TTGCACTTTGGTGCCTCTGT
* * *
49350384 TTACACTTTGGTGTCTTTGT
1 TTGCACTTTGGTGCCTCTGT
* ** * **
49350404 TTGCAATTCAGTACCTCTAA
1 TTGCACTTTGGTGCCTCTGT
** *
49350424 TTGCACAATCGTGCCTCTGT
1 TTGCACTTTGGTGCCTCTGT
*
49350444 TTGCACTCTGGTGCCTCT
1 TTGCACTTTGGTGCCTCT
49350462 ATTAGCATCT
Statistics
Matches: 69, Mismatches: 27, Indels: 2
0.70 0.28 0.02
Matches are distributed among these distances:
19 15 0.22
20 54 0.78
ACGTcount: A:0.14, C:0.26, G:0.19, T:0.41
Consensus pattern (20 bp):
TTGCACTTTGGTGCCTCTGT
Found at i:49350461 original size:40 final size:39
Alignment explanation
Indices: 49350356--49350462 Score: 99
Period size: 40 Copynumber: 2.7 Consensus size: 39
49350346 TGCACTTCGA
** *
49350356 TGCCTCTGTTTGCACTTTGGTGCCTCT-ATTACACTTTGG
1 TGCCTCTGTTTGCAC-TTGGTGCCTCTAATTACACAATCG
* * * * * *
49350395 TGTCTTTGTTTGCAATTCAGTACCTCTAATTGCACAATCG
1 TGCCTCTGTTTGCACTT-GGTGCCTCTAATTACACAATCG
49350435 TGCCTCTGTTTGCACTCTGGTGCCTCTA
1 TGCCTCTGTTTGCACT-TGGTGCCTCTA
49350463 TTAGCATCTA
Statistics
Matches: 51, Mismatches: 14, Indels: 5
0.73 0.20 0.07
Matches are distributed among these distances:
38 2 0.04
39 19 0.37
40 29 0.57
41 1 0.02
ACGTcount: A:0.14, C:0.26, G:0.19, T:0.41
Consensus pattern (39 bp):
TGCCTCTGTTTGCACTTGGTGCCTCTAATTACACAATCG
Found at i:49351527 original size:25 final size:24
Alignment explanation
Indices: 49351485--49351532 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
49351475 GAACCATAAT
49351485 TATATATATAAAAAAAAAATAAATC
1 TATATATATAAAAAAAAAA-AAATC
* * *
49351510 TATATTTATCAAACAAAAAAAAT
1 TATATATATAAAAAAAAAAAAAT
49351533 ACAATCAACC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (24 bp):
TATATATATAAAAAAAAAAAAATC
Found at i:49352787 original size:46 final size:47
Alignment explanation
Indices: 49352720--49352813 Score: 131
Period size: 46 Copynumber: 2.0 Consensus size: 47
49352710 ACATGAATTA
*
49352720 TCCTGTCTCCAATGCCATATATATT-A-ATGGG-CTTAACATGGCTCAT
1 TCCTGTCTCCAAAGCCATATAT-TTGATATGGGACTT-ACATGGCTCAT
*
49352766 TCCTGTCTCCAAAGCCGTATATTTGATATGGGACTTACATGGCTCAT
1 TCCTGTCTCCAAAGCCATATATTTGATATGGGACTTACATGGCTCAT
49352813 T
1 T
49352814 TGTTCTTTCC
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
45 2 0.05
46 21 0.49
47 17 0.40
48 3 0.07
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.35
Consensus pattern (47 bp):
TCCTGTCTCCAAAGCCATATATTTGATATGGGACTTACATGGCTCAT
Found at i:49372423 original size:39 final size:40
Alignment explanation
Indices: 49372306--49372490 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
49372296 GCTACTCGTT
*
49372306 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
49372346 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
49372386 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
49372425 CAAATGCCTTC-GGATCTTAGTCGGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
49372466 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49372491 CATCATTCGA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 76 0.62
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:49372474 original size:79 final size:81
Alignment explanation
Indices: 49372306--49372490 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
49372296 GCTACTCGTT
* *
49372306 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
49372370 GATTTAGTAACTCGCAC
65 GATATAGTAACTAGCAC
* * ** *
49372387 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
49372449 GATATGGTCACTTAGCA-
65 GATATAGTAAC-TAGCAC
49372466 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
49372491 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 25 0.28
81 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCAC
Found at i:49375016 original size:31 final size:31
Alignment explanation
Indices: 49374978--49375041 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
49374968 CCTTTTCATA
49374978 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
49375009 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
49375040 TT
1 TT
49375042 ACTGTAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:49375314 original size:23 final size:23
Alignment explanation
Indices: 49375254--49375351 Score: 135
Period size: 23 Copynumber: 4.2 Consensus size: 23
49375244 GGCCTATCCT
*
49375254 CTTTCAATAACTGGGG-AAAACGCC
1 CTTT-AATAACTGGGGCATAA-GCC
49375278 CTTTTAATAACTGGGGCATAAGCC
1 C-TTTAATAACTGGGGCATAAGCC
*
49375302 CTTTAATAGCTGGGGCATAAGCC
1 CTTTAATAACTGGGGCATAAGCC
*
49375325 CTTTAATAACTGGGGCGTAAGCC
1 CTTTAATAACTGGGGCATAAGCC
49375348 CTTT
1 CTTT
49375352 TACACTTCCT
Statistics
Matches: 68, Mismatches: 4, Indels: 5
0.88 0.05 0.06
Matches are distributed among these distances:
23 46 0.68
24 16 0.24
25 6 0.09
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
CTTTAATAACTGGGGCATAAGCC
Found at i:49375427 original size:20 final size:20
Alignment explanation
Indices: 49375402--49375468 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
49375392 TTATGATTAC
49375402 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
49375422 ATCATGTGCATATCATACAC
1 ATCATGTGCATATCATACAT
*
49375442 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
49375462 ACCATGT
1 ATCATGT
49375469 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:49378186 original size:42 final size:42
Alignment explanation
Indices: 49378139--49378230 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
49378129 TGGCCCATAG
* ** *
49378139 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
**
49378181 GCCCATTTCAATATCTTATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
49378223 GCCTATTT
1 GCCCATTT
49378231 GGGGAGACTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:49378446 original size:26 final size:26
Alignment explanation
Indices: 49378363--49378550 Score: 231
Period size: 26 Copynumber: 7.3 Consensus size: 26
49378353 CTGGAGGCCT
49378363 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
* * ** * *
49378387 AACCCATTTCGGTAAACTAGGGC-GA
1 AGCCCTTTTCAATAAACTGGGGCATA
49378412 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
** * *
49378438 AGCCCTTTTCGGTAAACTAGGGTATA
1 AGCCCTTTTCAATAAACTGGGGCATA
49378464 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
49378490 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* *
49378516 AGCCCTTTTCAATAAACTAGGGTATA
1 AGCCCTTTTCAATAAACTGGGGCATA
49378542 AGCCCTTTT
1 AGCCCTTTT
49378551 GCACTTCCTC
Statistics
Matches: 139, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
23 4 0.03
24 4 0.03
25 27 0.19
26 104 0.75
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:49378628 original size:20 final size:20
Alignment explanation
Indices: 49378603--49378666 Score: 94
Period size: 20 Copynumber: 3.2 Consensus size: 20
49378593 TGAATACATT
49378603 ATGTGCATTTCATACATATC
1 ATGTGCATTTCATACATATC
*
49378623 ATGTGCATTTTATACATATC
1 ATGTGCATTTCATACATATC
*
49378643 ATGTGCATATCATATCA-ATC
1 ATGTGCATTTCATA-CATATC
49378663 ATGT
1 ATGT
49378667 ATATCATATC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
20 38 0.95
21 2 0.05
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (20 bp):
ATGTGCATTTCATACATATC
Found at i:49379437 original size:27 final size:27
Alignment explanation
Indices: 49379376--49379439 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
49379366 GGCGTATTCA
49379376 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
49379403 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
*
49379430 TCTTTTTACC
1 TCATTTTACC
49379440 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:49379500 original size:27 final size:27
Alignment explanation
Indices: 49379470--49380183 Score: 224
Period size: 27 Copynumber: 26.4 Consensus size: 27
49379460 TTTCATCCTA
* *
49379470 CAAGGGTGTTTTGGTAAATTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
**
49379497 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
* * *
49379524 TAGGGGTATTTTGGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** ** *
49379551 TGAGGGTATTTCAGTAATTTAACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
49379577 CTAGTGGTCTTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTACAAAT
* * * **
49379604 CTAGGGGTGTTTTGGTAATTCTAC-CCT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* * *
49379631 ACAGGGGTATTTTAGTAATTTCAC-AAT
1 -CAAGGGTATTTTGGTAATTTTACAAAT
* ***** **
49379658 CGAGGGTAAAACAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
***** * **
49379685 CAAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
***** * *
49379712 CAAGGGTAAAACAGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
49379739 CGAGGGTACTTTGGTAATTTTTACAAGT
1 CAAGGGTATTTTGGTAA-TTTTACAAAT
* ***
49379767 CGAGGGTATTTCAATAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
49379794 CAGGTGGTATTTTAGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTACAAAT
* * * *
49379821 CTAGGGGCATTTTAGTAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* ***
49379849 CAGGGGTATTTTGGTAATTTTATTGAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** *
49379876 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
** ** *
49379903 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** * *
49379930 CGAGGGTAAAATGGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ***** **
49379957 CGAGGGTAAGACAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** * *
49379984 CGAGGGTAAAATGGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** * **
49380011 CGAGGGTAAAATGGTAATTCTATCTTA-
1 CAAGGGTATTTTGGTAATTTTA-CAAAT
*
49380038 C-AGGAGTATTTTAGTAATTTTACAAAAT
1 CAAGG-GTATTTTGGTAATTTTAC-AAAT
* * *
49380066 CGAGGGTATTTTAGTAATTTTGCAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
49380092 CTGAGGGTATTTCGGTAATTTTGCAAAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* * * *
49380120 CGAGGATATTTGGGTAA-TTTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*** * *
49380146 TGGGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
49380173 CGAGGGTATTT
1 CAAGGGTATTT
49380184 CAATAATTTG
Statistics
Matches: 545, Mismatches: 123, Indels: 38
0.77 0.17 0.05
Matches are distributed among these distances:
26 41 0.08
27 434 0.80
28 67 0.12
29 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:49379794 original size:55 final size:55
Alignment explanation
Indices: 49379742--49379869 Score: 152
Period size: 55 Copynumber: 2.3 Consensus size: 55
49379732 TATAAATCGA
* * *
49379742 GGGTACTTTGGTAATTTTTACAAGTCGA-GGGTATTTCAATAATTTTACAAATCAG
1 GGGTATTTTGGTAATTTTTACAA-ACGAGGGGCATTTCAATAATTTTACAAATCAG
* * * * *
49379797 GTGGTATTTTAGTAA-TTTTACAAACTAGGGGCATTTTAGTAATTTTACAAACCAG
1 G-GGTATTTTGGTAATTTTTACAAACGAGGGGCATTTCAATAATTTTACAAATCAG
49379852 GGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
49379870 ATTGATCGAG
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
54 14 0.23
55 36 0.59
56 11 0.18
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (55 bp):
GGGTATTTTGGTAATTTTTACAAACGAGGGGCATTTCAATAATTTTACAAATCAG
Found at i:49385390 original size:40 final size:40
Alignment explanation
Indices: 49385330--49385464 Score: 252
Period size: 40 Copynumber: 3.4 Consensus size: 40
49385320 CGGATGTAAC
*
49385330 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
49385370 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
49385410 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
49385450 AACCCACACGAATGC
1 AACCCGCACGAATGC
49385465 TATGCACATA
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:49389615 original size:42 final size:42
Alignment explanation
Indices: 49389538--49389688 Score: 153
Period size: 42 Copynumber: 3.6 Consensus size: 42
49389528 CCGAGGCTAT
* **
49389538 GTGTAAGACCATATCTGAGATATGGTATC-ATTATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGACATCGA-TATGAGATTTC
* * *
49389580 GTGTATGACCATATCTGGGGTATGACATCGATATGAGATCTC
1 GTGTAAGACCATATCTGGGATATGACATCGATATGAGATTTC
* * * *
49389622 GTATAAGACCATAGCTGGGCTATTAGCATCGATATGAGATCTT-
1 GTGTAAGACCATATCTGGGATATGA-CATCGATATGAGAT-TTC
* *
49389665 ATGTAAGACCATATCTAGGATATG
1 GTGTAAGACCATATCTGGGATATG
49389689 GCATTGGTGT
Statistics
Matches: 88, Mismatches: 18, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
42 54 0.61
43 33 0.38
44 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGACATCGATATGAGATTTC
Found at i:49393763 original size:18 final size:17
Alignment explanation
Indices: 49393742--49393796 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
49393732 GACAATTTTT
49393742 TCTCTTCTTCTTTTCTCC
1 TCTCTTCTTCTTTTCT-C
*
49393760 TCTCTTCATCTATTT-TC
1 TCTCTTCTTCT-TTTCTC
*
49393777 TCTTCCTCTTCTTTTC-C
1 TC-TCTTCTTCTTTTCTC
49393794 TCT
1 TCT
49393797 ATAGCCGAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
16 1 0.03
17 9 0.29
18 18 0.58
19 3 0.10
ACGTcount: A:0.04, C:0.36, G:0.00, T:0.60
Consensus pattern (17 bp):
TCTCTTCTTCTTTTCTC
Found at i:49395104 original size:27 final size:27
Alignment explanation
Indices: 49395023--49395104 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
49395013 AAGCATTCTG
*
49395023 GTGGCTCTGCCATAAATATCTG-ATCT
1 GTGGCTCTGCCACAAATATCTGTATCT
* * *
49395049 AGTGGCTCTGCCACAAATATTTATTTCT
1 -GTGGCTCTGCCACAAATATCTGTATCT
* *
49395077 GTGGCCCTGCCACAATTATCTGTATCT
1 GTGGCTCTGCCACAAATATCTGTATCT
49395104 G
1 G
49395105 GTGACTCTAT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
27 42 0.93
28 3 0.07
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (27 bp):
GTGGCTCTGCCACAAATATCTGTATCT
Found at i:49396531 original size:39 final size:40
Alignment explanation
Indices: 49396487--49396621 Score: 184
Period size: 39 Copynumber: 3.4 Consensus size: 40
49396477 CCTTCGGAGT
** *
49396487 TTAGCC-GGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCTGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* * *
49396526 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCTGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* *
49396566 TTAGCCTGG-TATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCTGGATATAGTAACTAGCACAAATGCCTTCGGGAC
49396605 TTAGCCTGGATATAGTA
1 TTAGCCTGGATATAGTA
49396622 GCACTTAGCC
Statistics
Matches: 85, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 43 0.51
40 42 0.49
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (40 bp):
TTAGCCTGGATATAGTAACTAGCACAAATGCCTTCGGGAC
Found at i:49404580 original size:40 final size:40
Alignment explanation
Indices: 49404529--49404684 Score: 181
Period size: 40 Copynumber: 3.9 Consensus size: 40
49404519 GGATATAGCC
* *
49404529 ACTAGCTCAAATGCCTTCGGGACTTAGCTCGGTTATAGTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
49404569 ACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * * * **
49404609 GCTCGCACGAATGCCTTCGGGACTTAGCCCGG-AATTAGCC
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
*
49404649 ACTAGCTCAAATG-CTCTCGGGACTTAGCCCGGTTAT
1 ACTAGCACAAATGCCT-TCGGGACTTAGCCCGGTTAT
49404685 CATTCGAACA
Statistics
Matches: 98, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.03
40 94 0.96
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:49409213 original size:18 final size:17
Alignment explanation
Indices: 49409192--49409246 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
49409182 ACAATTCTTT
49409192 TCTCTTCTTCTTTTCTCC
1 TCTCTTCTTCTTTTCT-C
*
49409210 TCTCTTCATCTATTT-TC
1 TCTCTTCTTCT-TTTCTC
49409227 TCTTCTTCTTCTTTTC-C
1 TC-TCTTCTTCTTTTCTC
49409244 TCT
1 TCT
49409247 ATAGTCGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
16 1 0.03
17 9 0.28
18 19 0.59
19 3 0.09
ACGTcount: A:0.04, C:0.35, G:0.00, T:0.62
Consensus pattern (17 bp):
TCTCTTCTTCTTTTCTC
Found at i:49410339 original size:27 final size:27
Alignment explanation
Indices: 49410309--49410366 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
49410299 TACTAAAATA
* *
49410309 CCCTAAGTATG-AAAATTACCATTATGC
1 CCCTAAG-ATGCAAAATGACCATTATAC
*
49410336 CCCT-AGGTGCAAAATGACCATTATAC
1 CCCTAAGATGCAAAATGACCATTATAC
49410362 CCCTA
1 CCCTA
49410367 GGGTTGATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 2 0.08
26 20 0.77
27 4 0.15
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (27 bp):
CCCTAAGATGCAAAATGACCATTATAC
Found at i:49410511 original size:28 final size:28
Alignment explanation
Indices: 49410468--49410533 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
49410458 TGGAGGAAGC
*
49410468 GTTT-TGGTGGCTCTACCACAAATATCT
1 GTTTCTGGTGGCCCTACCACAAATATCT
*
49410495 GTTTCTGGTGGCCCTACCACAATTATCT
1 GTTTCTGGTGGCCCTACCACAAATATCT
49410523 GTTTTCTGGTG
1 G-TTTCTGGTG
49410534 ACTCTATCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 4 0.11
28 22 0.63
29 9 0.26
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (28 bp):
GTTTCTGGTGGCCCTACCACAAATATCT
Found at i:49410549 original size:28 final size:28
Alignment explanation
Indices: 49410480--49410553 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
49410470 TTTGGTGGCT
*
49410480 CTACCACAAATATCTG-TTTCTGGTGGCC
1 CTACCAC-AATATCTGTTTTCTGGTGACC
*
49410508 CTACCACAATTATCTGTTTTCTGGTGACT
1 CTACCACAA-TATCTGTTTTCTGGTGACC
* *
49410537 CTATCATAATATCTGTT
1 CTACCACAATATCTGTT
49410554 CTGGCGGCCA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
27 2 0.05
28 21 0.52
29 17 0.43
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (28 bp):
CTACCACAATATCTGTTTTCTGGTGACC
Found at i:49416316 original size:40 final size:39
Alignment explanation
Indices: 49416232--49416416 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 39
49416222 TTGAATGATG
* * * *
49416232 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
49416272 TCCGGACTAAGATCCAAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
49416312 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
49416351 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
49416392 -CCAGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
49416417 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 32 0.27
40 77 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:49416438 original size:79 final size:79
Alignment explanation
Indices: 49416288--49416449 Score: 177
Period size: 79 Copynumber: 2.1 Consensus size: 79
49416278 CTAAGATCCA
* * ** *
49416288 AAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAAATC
1 AAGGCATTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATC
* *
49416353 TGGGTTAAGTCCCG
66 TCGGTTAAATCCCG
* * *
49416367 AAGGCATTTGTGCGAGTTACT-ATAACCAGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTAT
1 AAGGCATTTGTGCGAGATACTAAT-ACCAGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTAA
*
49416430 ATC-CGGTTAAATTCCG
63 ATCTCGGTTAAATCCCG
49416446 AAGG
1 AAGG
49416450 TACGTGATTT
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 44 0.64
80 23 0.33
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATC
TCGGTTAAATCCCG
Found at i:49424507 original size:39 final size:40
Alignment explanation
Indices: 49424409--49424590 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
49424399 AATGATGTCT
* * **
49424409 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGA-CCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT-TCC
* *
49424449 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATATTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAATTCC
* *
49424489 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAATTCC
* *
49424528 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-ATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT-TCC
*
49424568 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
49424591 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 75 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAATTCC
Found at i:49424542 original size:79 final size:81
Alignment explanation
Indices: 49424409--49424590 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 81
49424399 AATGATGTCT
*
49424409 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
*
49424473 GCGAGATATTA-ATTCC
66 GCGAGATATTATA-ACC
* * * **
49424489 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTG
*
49424551 TGCGAGTTATTATAACC
65 TGCGAGATATTATAACC
*
49424568 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
49424591 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (81 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
GCGAGATATTATAACC
Found at i:49424612 original size:79 final size:79
Alignment explanation
Indices: 49424459--49424623 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
49424449 GGACTAAGAT
* **
49424459 CCGAAGGCATTTGTGCGAGATATTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
49424524 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
49424538 CCGAAGGCATTTGTGCGAGTTATT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATATTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
49424601 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
49424617 CCGAAGG
1 CCGAAGG
49424624 TATGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:49428118 original size:11 final size:11
Alignment explanation
Indices: 49428072--49428120 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
49428062 TTGTTCGATC
49428072 ATGATTCGACA
1 ATGATTCGACA
*
49428083 ACGATTCGACA
1 ATGATTCGACA
* *
49428094 GTAATTCGA-A
1 ATGATTCGACA
*
49428104 ATGATTCGACT
1 ATGATTCGACA
49428115 ATGATT
1 ATGATT
49428121 TGGTATTGGA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
10 8 0.27
11 22 0.73
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (11 bp):
ATGATTCGACA
Found at i:49435261 original size:54 final size:54
Alignment explanation
Indices: 49435187--49435417 Score: 277
Period size: 54 Copynumber: 4.3 Consensus size: 54
49435177 TAGAATACTT
** * * *
49435187 TTGTTTACCAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCAT
1 TTGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCAC
* *
49435241 TTGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATGCCCC
1 TTGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCAC
* * *
49435295 TAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCAC
1 TTGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCAC
* * * * * *
49435349 TGGTTTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAACTACCAAAATACC-C
1 TTGTTTATAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCAC
*
49435402 TTGATTTACAAAATTA
1 TTG-TTTATAAAATTA
49435418 TAGAAATATC
Statistics
Matches: 153, Mismatches: 22, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
53 7 0.05
54 146 0.95
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (54 bp):
TTGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCAC
Found at i:49435402 original size:27 final size:27
Alignment explanation
Indices: 49435196--49435401 Score: 270
Period size: 27 Copynumber: 7.6 Consensus size: 27
49435186 TTTGTTTACC
*
49435196 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* ** * *
49435223 AAATTACTAAAATACCATTTGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
49435250 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
49435277 AAATTACCAAAATGCCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
49435304 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
49435331 AAATTATCAAAATACCACTGGTTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
49435358 AAATTACCGAAATA-CCCTCAATTTGTA
1 AAATTACCAAAATACCCCT-AGTTTGTA
*
49435385 AAACTACCAAAATACCC
1 AAATTACCAAAATACCC
49435402 TTGATTTACA
Statistics
Matches: 153, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
26 3 0.02
27 148 0.97
28 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:49435424 original size:27 final size:27
Alignment explanation
Indices: 49435394--49435473 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 27
49435384 AAAACTACCA
49435394 AAATACCCTTGATTTACAAAATTATAG
1 AAATACCCTTGATTTACAAAATTATAG
* *
49435421 AAATATCCTTGACTTT-CTAAAAATTATTG
1 AAATACCCTTGA-TTTAC--AAAATTATAG
* *
49435450 AAATACCATTGGTTTACAAAATTA
1 AAATACCCTTGATTTACAAAATTA
49435474 CTGAAATGCC
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
27 19 0.43
28 6 0.14
29 19 0.43
ACGTcount: A:0.42, C:0.14, G:0.07, T:0.36
Consensus pattern (27 bp):
AAATACCCTTGATTTACAAAATTATAG
Found at i:49435425 original size:81 final size:80
Alignment explanation
Indices: 49435196--49435425 Score: 250
Period size: 81 Copynumber: 2.8 Consensus size: 80
49435186 TTTGTTTACC
** * * *
49435196 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCATTTG-TTTATAAAATTACCAA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACC-CTTGATTTATAAAATTA-TAA
*
49435260 AATACCCCTAGTTTGTA
64 AATACCACTAGTTTGTA
* * * *
49435277 AAATTACCAAAATGCCCCTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTATCAA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCTTGA-TTTATAAAATTAT-AA
* *
49435341 AATACCACTGGTTTGTG
64 AATACCACTAGTTTGTA
* * *
49435358 AAATTACCGAAATA-CCCTCAATTTGTAAAACTACCAAAATACCCTTGATTTACAAAATTATAGA
1 AAATTACCAAAATACCCCT-AATTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTATA-A
49435422 AATA
64 AATA
49435426 TCCTTGACTT
Statistics
Matches: 126, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
80 6 0.05
81 119 0.94
82 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTATAAAA
TACCACTAGTTTGTA
Found at i:49435528 original size:110 final size:110
Alignment explanation
Indices: 49435222--49435494 Score: 243
Period size: 108 Copynumber: 2.5 Consensus size: 110
49435212 CCTGGTTTGT
* * * * * *
49435222 AAAATTA-CTAAAATACCATTTGTTTATAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACC
1 AAAATTATC-AAAATACCACTGGTTTACAAAATTACCGAAATACCCTC-AATTTGTAAAACTACC
* * ** * * * * *
49435285 AAAATGCCC-CTAGTTTGTAAAATTACCA-AAATACCCCT-AGTTTGT-
64 AAAATACCCTCGA-TTTACAAAATTA-TAGAAATATCCTTGACTTTCTA
***
49435330 AAAATTATCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAACTACCAA
1 AAAATTATCAAAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAAAACTACCAA
*
49435395 AATACCCTTGATTTACAAAATTATAGAAATATCCTTGACTTTCTA
66 AATACCCTCGATTTACAAAATTATAGAAATATCCTTGACTTTCTA
** * * * *
49435440 AAAATTATTGAAATACCATTGGTTTACAAAATTACTGAAATGCCTTCAATTTGTA
1 AAAATTATCAAAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTA
49435495 GAATGACCAT
Statistics
Matches: 133, Mismatches: 26, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
107 1 0.01
108 78 0.59
109 8 0.06
110 46 0.35
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (110 bp):
AAAATTATCAAAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAAAACTACCAA
AATACCCTCGATTTACAAAATTATAGAAATATCCTTGACTTTCTA
Found at i:49435538 original size:27 final size:27
Alignment explanation
Indices: 49435500--49435625 Score: 173
Period size: 27 Copynumber: 4.7 Consensus size: 27
49435490 TTGTAGAATG
*
49435500 ACCATTTTACCCTCGATTTATAGAATT
1 ACCATTTTACCCTCGATTTATAAAATT
* * * * *
49435527 ATCGTTTCACCCTTGATTTACAAAATT
1 ACCATTTTACCCTCGATTTATAAAATT
*
49435554 ACCATTTTACCCTCGATTTATAGAATT
1 ACCATTTTACCCTCGATTTATAAAATT
49435581 ACCATTTTACCCTC-AGTTTATAAAATT
1 ACCATTTTACCCTCGA-TTTATAAAATT
49435608 ACCATTTTACCCTCGATT
1 ACCATTTTACCCTCGATT
49435626 GTGAAATTAC
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 1 0.01
27 82 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.40
Consensus pattern (27 bp):
ACCATTTTACCCTCGATTTATAAAATT
Found at i:49435564 original size:54 final size:54
Alignment explanation
Indices: 49435500--49435625 Score: 191
Period size: 54 Copynumber: 2.3 Consensus size: 54
49435490 TTGTAGAATG
* * *
49435500 ACCATTTTACCCTCGATTTATAGAATTATCGTTTCACCCT-TGATTTACAAAATT
1 ACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCAG-TTTACAAAATT
* *
49435554 ACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAGTTTATAAAATT
1 ACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCAGTTTACAAAATT
49435608 ACCATTTTACCCTCGATT
1 ACCATTTTACCCTCGATT
49435626 GTGAAATTAC
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 65 0.98
55 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.40
Consensus pattern (54 bp):
ACCATTTTACCCTCGATTTATAGAATTACCATTTCACCCTCAGTTTACAAAATT
Found at i:49435977 original size:27 final size:27
Alignment explanation
Indices: 49435630--49435985 Score: 333
Period size: 27 Copynumber: 13.3 Consensus size: 27
49435620 TCGATTGTGA
* ** *
49435630 AATTACTGAAATACCCCCGTAGGATAG
1 AATTACCGAAATACCCCTATAGGGTAG
* ** *
49435657 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCTA-TAGGGTAG
* ** *
49435684 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCTA-TAGGGTAG
*
49435711 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * *
49435738 AATTACCGGAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * * *
49435765 AATTACAGGAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * *
49435792 AATTATCGCAATACCCCTTTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
*
49435819 AATTACCGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
*
49435846 AATTATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* *
49435873 AATTATCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
*
49435900 AATTACCGAAATA-CCCTGTA-GGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
** * * *
49435925 AATTACTAAAATACTCCTGTAAGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * * *
49435952 AATTACCGAGATACCCTTATGGGGTAA
1 AATTACCGAAATACCCCTATAGGGTAG
49435979 AATTACC
1 AATTACC
49435986 ATTTTACCCC
Statistics
Matches: 280, Mismatches: 45, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
25 16 0.06
26 13 0.05
27 250 0.89
28 1 0.00
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTATAGGGTAG
Found at i:49436465 original size:22 final size:22
Alignment explanation
Indices: 49436413--49436477 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
49436403 TTAAAGCCTT
* *
49436413 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
49436435 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
49436457 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
49436478 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:49436666 original size:27 final size:26
Alignment explanation
Indices: 49436636--49436734 Score: 99
Period size: 27 Copynumber: 3.7 Consensus size: 26
49436626 ATTATGTTAA
* *
49436636 GTGGCTTTGCCACATTATCTATTTCTG
1 GTGGCTATGCCACAATATCT-TTTCTG
*
49436663 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTTTTCTG
* *
49436690 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCT-TTTCTG
* * *
49436717 GTGACTCTGTCACAATAT
1 GTGGCTATGCCACAATAT
49436735 TTGATATCTG
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 7 0.11
27 49 0.79
28 6 0.10
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTTTTCTG
Found at i:49436913 original size:6 final size:6
Alignment explanation
Indices: 49436874--49437012 Score: 58
Period size: 6 Copynumber: 22.3 Consensus size: 6
49436864 TTGCATTCAC
*
49436874 ATTCTG ATTTTTG ATTCT- ATTACCTG ATAT-TG ATTCTG ATAT-TG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG AT-TCTG ATTCTG
* * * * *
49436924 -TTACCTG ATACTA ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTA
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
*
49436974 ATTCTG ATTCTG -TCACCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG A-TTCTG AT
49437013 AATGTTTCTT
Statistics
Matches: 100, Mismatches: 14, Indels: 38
0.66 0.09 0.25
Matches are distributed among these distances:
5 11 0.11
6 65 0.65
7 18 0.18
8 5 0.05
9 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:49436922 original size:31 final size:31
Alignment explanation
Indices: 49436874--49437003 Score: 179
Period size: 31 Copynumber: 4.2 Consensus size: 31
49436864 TTGCATTCAC
* *
49436874 ATTCTGATTTTTGATTCTATTACCTGATATTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
* *
49436906 ATTCTGATATTGATTCTGTTACCTGATACTA
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
49436937 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
49436968 ATTCTAATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
49436999 ATTCT
1 ATTCT
49437004 AGTTCTGATA
Statistics
Matches: 88, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
31 81 0.92
32 7 0.08
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:49440670 original size:45 final size:43
Alignment explanation
Indices: 49440618--49440738 Score: 117
Period size: 41 Copynumber: 2.8 Consensus size: 43
49440608 ATGTGTTTTT
*
49440618 GTGTAAGACCACT-TCTGGGACGTTGGCATCGATATATGTGGTTAC
1 GTGTAAGACCACTGTCTGGGACGTTGGCATCGATAT-T-TGATT-C
* ** *
49440663 GTGTAAGACCA-TGTCTAGGATATTGGTATCG-TATTTGATTC
1 GTGTAAGACCACTGTCTGGGACGTTGGCATCGATATTTGATTC
*
49440704 GTGTAAGACC-CTGTCTGGGACAG-TGGCATTGATAT
1 GTGTAAGACCACTGTCTGGGAC-GTTGGCATCGATAT
49440739 GAGATGACAT
Statistics
Matches: 62, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
41 25 0.40
42 7 0.11
43 1 0.02
44 4 0.06
45 25 0.40
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (43 bp):
GTGTAAGACCACTGTCTGGGACGTTGGCATCGATATTTGATTC
Found at i:49444745 original size:27 final size:27
Alignment explanation
Indices: 49444707--49444761 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
49444697 ACTTGGCGTG
49444707 TCACATTGAAGTGTTTTTCGAAAACCA
1 TCACATTGAAGTGTTTTTCGAAAACCA
49444734 TCACATTGAAGTGTTTTTCGAAAACCA
1 TCACATTGAAGTGTTTTTCGAAAACCA
49444761 T
1 T
49444762 GTTTCCATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.35
Consensus pattern (27 bp):
TCACATTGAAGTGTTTTTCGAAAACCA
Found at i:49445364 original size:6 final size:6
Alignment explanation
Indices: 49445353--49445497 Score: 122
Period size: 6 Copynumber: 23.8 Consensus size: 6
49445343 AACCAAAATG
*
49445353 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGA-ATC AG-AATC
* * *
49445401 AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATT AGTAA-C AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AG-AATC AGAATC
* *
49445450 AGAATC AGAATC AGAATC AGAATT ATGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
49445498 GTGAATGCAA
Statistics
Matches: 113, Mismatches: 12, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
5 9 0.08
6 92 0.81
7 9 0.08
8 3 0.03
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:49445652 original size:27 final size:26
Alignment explanation
Indices: 49445615--49445680 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
49445605 AGCATGGCTG
*
49445615 CCAGAACAGATATCGTGAAAGAGTCA
1 CCAGAACAGATATCGTGAAAGAGCCA
* **
49445641 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGAAAGAGCCA
49445668 CCAGAATCAGATA
1 CCAGAA-CAGATA
49445681 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGAAAGAGCCA
Found at i:49445685 original size:27 final size:27
Alignment explanation
Indices: 49445634--49445688 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
49445624 ATATCGTGAA
* *
49445634 AGAGTCACCAGATACAGATATTGTGGC
1 AGAGCCACCAGATACAGATAATGTGGC
49445661 AGAGCCACCAGA-ATCAGATAATGTGGC
1 AGAGCCACCAGATA-CAGATAATGTGGC
49445688 A
1 A
49445689 AACCCACCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 24 0.96
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.18
Consensus pattern (27 bp):
AGAGCCACCAGATACAGATAATGTGGC
Found at i:49445695 original size:27 final size:27
Alignment explanation
Indices: 49445639--49445696 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
49445629 GTGAAAGAGT
* * *
49445639 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
49445666 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
49445693 CACC
1 CACC
49445697 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:49446078 original size:27 final size:26
Alignment explanation
Indices: 49445999--49446081 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
49445989 TCGATCGGTC
** * *
49445999 AACAGATATTGTGATAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
49446025 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
49446052 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
49446079 AAC
1 AAC
49446082 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:49446319 original size:27 final size:27
Alignment explanation
Indices: 49446288--49446467 Score: 234
Period size: 27 Copynumber: 6.7 Consensus size: 27
49446278 ATGGTTATTT
* *
49446288 TACCCTACAAGGGTATCTCGGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
*
49446315 TACCCTACAGGGGTATTTCGGTATTTC
1 TACCCTACAGGGGTATTTCGGTAATTC
* *
49446342 TACCCTACAAGGGTATTTCGATAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
*
49446369 TACCCTACAGGGGTATTTTGGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
* * * *
49446396 TATCCTATAAGGGTATTTCAGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
* * *
49446423 TACCCTATAGGGGTATTTCAGAAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
*
49446450 TACCCTATAGGGGTATTT
1 TACCCTACAGGGGTATTT
49446468 TAGTAATTTC
Statistics
Matches: 136, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 136 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCGGTAATTC
Found at i:49446879 original size:27 final size:27
Alignment explanation
Indices: 49446480--49446862 Score: 441
Period size: 27 Copynumber: 14.2 Consensus size: 27
49446470 GTAATTTCAC
* * *
49446480 AATCAAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
49446507 AA-CTGGGGGT-AACCTAGTAATTCTGTA
1 AATC-GAGGGTAAAAC-GGTAATTCTGTA
* * * **
49446534 AATCAAAGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
49446561 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
49446588 AATTGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
49446615 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
49446642 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
49446669 AA-CTGAGGGTAAAATAGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
49446696 AATCGAGGGTAAAATGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
49446723 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
49446750 AATCGAGGGTAAAACAGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
49446777 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
49446804 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
49446831 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
49446858 AATCG
1 AATCG
49446863 GGAGTACTTT
Statistics
Matches: 305, Mismatches: 43, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.02
27 294 0.96
28 6 0.02
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:49446893 original size:81 final size:81
Alignment explanation
Indices: 49446480--49446862 Score: 504
Period size: 81 Copynumber: 4.7 Consensus size: 81
49446470 GTAATTTCAC
* * * * * * * *
49446480 AATCAAGGGTAAAACGATAATTTTGTAAA-CTGGGGGT-AACCTAGTAATTCTGTAAATCAAAGG
1 AATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAAC-AGTAATTCTATAAATCGAGGG
*
49446543 TAAAACGGTAATTTTACA
64 TAAAACGGTAATTTTAAA
* * * *
49446561 AATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGT
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATC-GAGGGT
* **
49446625 AAAACGGTAATTCTGTA
65 AAAACGGTAATTTTAAA
*
49446642 AATCGAGGGTAAAACGGTAATTCTGTAAA-CTGAGGGTAAAATAGTAATTCTATAAATCGAGGGT
1 AATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACAGTAATTCTATAAATCGAGGGT
*
49446706 AAAATGGTAATTTTAAA
65 AAAACGGTAATTTTAAA
* *
49446723 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTAAAAATCGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTA
49446788 AAACGGTAATTTTAAA
66 AAACGGTAATTTTAAA
* *
49446804 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCG
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCG
49446863 GGAGTACTTT
Statistics
Matches: 268, Mismatches: 28, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
80 1 0.00
81 263 0.98
82 4 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.27
Consensus pattern (81 bp):
AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTA
AAACGGTAATTTTAAA
Found at i:49465876 original size:28 final size:28
Alignment explanation
Indices: 49465829--49465890 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
49465819 TGTTACTGTC
* *
49465829 ACTGAAATGGGCTAAAGCCC-ACACTGAT
1 ACTGAAATGAGCTAAAGCCCTA-ACTGAA
* *
49465857 ACTGAAATGAGCTTAGGCCCTAACTGAA
1 ACTGAAATGAGCTAAAGCCCTAACTGAA
49465885 ACTGAA
1 ACTGAA
49465891 CTATTACTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 28 0.97
29 1 0.03
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (28 bp):
ACTGAAATGAGCTAAAGCCCTAACTGAA
Found at i:49477864 original size:50 final size:50
Alignment explanation
Indices: 49477737--49477933 Score: 243
Period size: 50 Copynumber: 3.9 Consensus size: 50
49477727 TAGCGAAAGC
* * * *
49477737 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
* *
49477786 TATCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
* * * ***
49477836 CATCTGATACACGTAGTAGCCTGTACTTAGTACTACACACGTGATGGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-T
* * *
49477887 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT
49477934 CACAATAGAT
Statistics
Matches: 123, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
49 41 0.33
50 44 0.36
51 38 0.31
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (50 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
Found at i:49477919 original size:101 final size:99
Alignment explanation
Indices: 49477750--49477933 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 99
49477740 CTGGTACGCA
* * **
49477750 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
49477815 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGTGACCTAACCATCTGATACACG
* * ** *
49477849 TAGTAGCCTGTACTTAGTACTACACACGTGATGGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCGGGTACACATAGTAGCCTGCACT
49477914 TAGTACTACACACGTGACCT
64 TAGTACTACACACGTGACCT
49477934 CACAATAGAT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 28 0.38
100 2 0.03
101 44 0.59
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCTAACCATCTGATACACG
Found at i:49482274 original size:44 final size:42
Alignment explanation
Indices: 49482202--49482304 Score: 154
Period size: 44 Copynumber: 2.4 Consensus size: 42
49482192 ATCCGATATG
*
49482202 TGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCG-ACTT
1 TGATTTCGTGTAAGACCACGTCTAGGACGTTGGCATCGTAC-T
*
49482244 ATGGTTTACGTGTAAGACCACGTCTAGGACGTTGGCATCGTACT
1 -TGATTT-CGTGTAAGACCACGTCTAGGACGTTGGCATCGTACT
49482288 TGATTTCGTGTAAGACC
1 TGATTTCGTGTAAGACC
49482305 CTATCTGGGA
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
42 11 0.20
43 10 0.18
44 32 0.58
45 2 0.04
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.31
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCACGTCTAGGACGTTGGCATCGTACT
Found at i:49483108 original size:22 final size:22
Alignment explanation
Indices: 49483083--49483129 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
49483073 AATATATGCT
*
49483083 TTGGTATGATTTTGGTTTA-GAA
1 TTGGTATGA-TTTGGTTGATGAA
49483105 TTGGTATGATTTGGTTGATGAA
1 TTGGTATGATTTGGTTGATGAA
49483127 TTG
1 TTG
49483130 AGAATGGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (22 bp):
TTGGTATGATTTGGTTGATGAA
Found at i:49485118 original size:46 final size:46
Alignment explanation
Indices: 49485065--49485247 Score: 267
Period size: 46 Copynumber: 4.0 Consensus size: 46
49485055 TATATATACA
* * *
49485065 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * * *
49485111 CATCTCATACACGTTTCGCATTAGCCATTGGGCTTTACCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * *
49485157 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
*
49485203 CATCCCATACACATTTCACATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATAT
49485248 ATACACTTCC
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 126 1.00
ACGTcount: A:0.25, C:0.32, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:49485290 original size:22 final size:22
Alignment explanation
Indices: 49485264--49485339 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
49485254 TTCCACGTTC
49485264 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
49485286 ATCACATATATG-CATGT-T-CACATT
1 ATCACAT-T-GGCCAT-TCTGC-C-TT
*
49485310 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
49485333 ATCACAT
1 ATCACAT
49485340 ATATGCATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:49485292 original size:47 final size:47
Alignment explanation
Indices: 49485218--49485598 Score: 568
Period size: 47 Copynumber: 8.1 Consensus size: 47
49485208 CATACACATT
* * * * * *
49485218 TCACATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCA
*
49485265 TCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
49485312 TCACATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
49485359 TCACATTGGCCATTCGG-CTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
49485405 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
49485452 TCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
49485499 TCACATTGGCCATTCGGCCTTATCTCATATATGAATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * * **
49485546 TCACATTTGCCATTCGGCCTTATCTCATTTATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
49485593 TCACAT
1 TCACAT
49485599 AAAATCCTAA
Statistics
Matches: 310, Mismatches: 22, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
46 45 0.15
47 265 0.85
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:49485411 original size:187 final size:188
Alignment explanation
Indices: 49485218--49485598 Score: 577
Period size: 187 Copynumber: 2.0 Consensus size: 188
49485208 CATACACATT
* * * *
49485218 TCACATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCACATTGGCCATTCTG
1 TCACATTAGCCATTCGGCCTTACCACACATATACA-TGTCCACATTCATCACATTGGCCATTCAG
*
49485282 CCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCA
65 CCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGAA
* **
49485347 TATTCACATTCATCACATTGGCCATTCGG-CTTATCACACATATGCATGTTCACATTCA
130 TATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACACATTCACATTCA
* * * *
49485405 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCAGC
1 TCACATTAGCCATTCGGCCTTACCACACATATACATGTCCACATTCATCACATTGGCCATTCAGC
*
49485470 CTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGAAT
66 CTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGAAT
* * * **
49485535 GTTCACATTCATCACATTTGCCATTCGGCCTTATCTCATTTATACACATTCACATTCA
131 ATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACACATTCACATTCA
49485593 TCACAT
1 TCACAT
49485599 AAAATCCTAA
Statistics
Matches: 174, Mismatches: 18, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
186 1 0.01
187 144 0.83
188 29 0.17
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (188 bp):
TCACATTAGCCATTCGGCCTTACCACACATATACATGTCCACATTCATCACATTGGCCATTCAGC
CTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGAAT
ATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACACATTCACATTCA
Found at i:49485630 original size:141 final size:140
Alignment explanation
Indices: 49485218--49485600 Score: 410
Period size: 140 Copynumber: 2.7 Consensus size: 140
49485208 CATACACATT
* * * * * *
49485218 TCACATTAGCCATTCGGCTTTACCACATATAT-ACACT-TCCACGTTCATCACATTGGCCATTCT
1 TCACATTGGCCATTCGGC-TTATCACACATATGA-A-TGTTCACATTCATCACATTGGCCATTCG
* * ** ** * * ***
49485281 GCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGC
63 GCCTTATCACACATATACACATTCACATTCATCACATAAGCCAATCAGAAATATCACATATATGC
*
49485346 ATATTCACATTCA
128 ATGTTCACATTCA
*
49485359 TCACATTGGCCATTCGGCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCC
1 TCACATTGGCCATTCGGCTTATCACACATATGAATGTTCACATTCATCACATTGGCCATTCGGCC
* ** ** * ***
49485424 TTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATGCATG
66 TTATCACACATATACACATTCACATTCATCACATAAGCCAATCAGAAATATCACATATATGCATG
49485489 TTCACATTCA
131 TTCACATTCA
* * *
49485499 TCACATTGGCCATTCGGCCTTATCTCATATATGAATGTTCACATTCATCACATTTGCCATTCGGC
1 TCACATTGGCCATTCGG-CTTATCACACATATGAATGTTCACATTCATCACATTGGCCATTCGGC
* **
49485564 CTTATCTCATTTATACACATTCACATTCATCACATAA
65 CTTATCACACATATACACATTCACATTCATCACATAA
49485601 AATCCTAAAT
Statistics
Matches: 217, Mismatches: 22, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
139 1 0.00
140 127 0.59
141 89 0.41
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.34
Consensus pattern (140 bp):
TCACATTGGCCATTCGGCTTATCACACATATGAATGTTCACATTCATCACATTGGCCATTCGGCC
TTATCACACATATACACATTCACATTCATCACATAAGCCAATCAGAAATATCACATATATGCATG
TTCACATTCA
Found at i:49496224 original size:70 final size:70
Alignment explanation
Indices: 49496136--49496302 Score: 257
Period size: 70 Copynumber: 2.4 Consensus size: 70
49496126 GACTATATGC
*
49496136 GGCACTTAGTGT-TCGAAACATTGAGTAAGGCACTTAGTGTGTAG-AATTATAATAGCTTCGGCT
1 GGCACTTAGTGTGT-GAAACATCGAGTAAGGCACTTAGTGTG-AGAAATTATAATAGCTTCGGCT
49496199 ATGCGAT
64 ATGCGAT
* *
49496206 GGCATTTAGTGTGTGAAACATCGAGTAAGGCACTTAGTGTGCGAAATTATAATAGCTTCGGCTAT
1 GGCACTTAGTGTGTGAAACATCGAGTAAGGCACTTAGTGTGAGAAATTATAATAGCTTCGGCTAT
49496271 GCGAT
66 GCGAT
* *
49496276 GGCACTTAGTGTGCGAAACATCAAGTA
1 GGCACTTAGTGTGTGAAACATCGAGTA
49496303 TTCGACAGTG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
69 1 0.01
70 87 0.98
71 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (70 bp):
GGCACTTAGTGTGTGAAACATCGAGTAAGGCACTTAGTGTGAGAAATTATAATAGCTTCGGCTAT
GCGAT
Found at i:49500054 original size:55 final size:55
Alignment explanation
Indices: 49499993--49500169 Score: 237
Period size: 55 Copynumber: 3.2 Consensus size: 55
49499983 ATATTAAGTC
* * *
49499993 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
49500048 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * * *
49500103 CGTACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
49500159 CGCACACTTAG
1 CGCACACTTAG
49500170 CGCCAATCTC
Statistics
Matches: 107, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
55 92 0.86
56 15 0.14
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:49500057 original size:28 final size:27
Alignment explanation
Indices: 49499993--49500144 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
49499983 ATATTAAGTC
* *
49499993 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
49500020 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
49500048 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
49500075 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* * *
49500103 CGTACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
49500130 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
49500145 GCACAATTTA
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
27 65 0.56
28 51 0.44
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:49504779 original size:46 final size:46
Alignment explanation
Indices: 49504712--49504885 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
49504702 TGTAACCCGC
49504712 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
49504758 CCATAAGTGAACTCGGACTCAACTCAACAAGCTC-GG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGC-A--T
* *** * * *
49504804 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
49504851 -CATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
49504886 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 30 0.28
46 42 0.39
47 25 0.23
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:49504886 original size:92 final size:93
Alignment explanation
Indices: 49504720--49504889 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 93
49504710 GCCCATAAGT
*
49504720 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
49504785 CAAGCTCGGATGCCTAGTTACATCTCTC
66 CAAGCTCGGATGCCTAGTTACATCTCTC
* *
49504813 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT-CATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
49504877 CGAGTTCGGATGC
66 CAAGCTCGGATGC
49504890 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 37 0.51
93 35 0.49
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGCTCGGATGCCTAGTTACATCTCTC
Found at i:49507314 original size:30 final size:30
Alignment explanation
Indices: 49507279--49507338 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
49507269 CAAGAAAACT
*
49507279 GAATAAAGAAATCCAAGATAGAGAAACCCA
1 GAATAAAGAAATCCAAGATAAAGAAACCCA
* *
49507309 GAATAAAGAGATCCAGGATAAAGAAACCCA
1 GAATAAAGAAATCCAAGATAAAGAAACCCA
49507339 AGATATGATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAACCCA
Found at i:49507343 original size:15 final size:15
Alignment explanation
Indices: 49507281--49507343 Score: 65
Period size: 15 Copynumber: 4.2 Consensus size: 15
49507271 AGAAAACTGA
*
49507281 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
*
49507296 ATAGAGAAACCC-AG
1 ATAAAGAAACCCAAG
* * *
49507310 AATAAAGAGATCCAGG
1 -ATAAAGAAACCCAAG
49507326 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
49507341 ATA
1 ATA
49507344 TGATACTATG
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
14 2 0.05
15 34 0.92
16 1 0.03
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.11
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:49510336 original size:46 final size:45
Alignment explanation
Indices: 49510269--49510443 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 45
49510259 TGTAACCCGC
*
49510269 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATT-ACAT
49510315 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTACAT
* * * * * *
49510365 CTC-T---CGAACTCAGACTCAACTCAA-GAAGTTCAGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACG-AGCTCGGGCA-TTACAT
*
49510408 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
49510444 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 11, Indels: 24
0.75 0.08 0.17
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
46 60 0.57
47 24 0.23
48 1 0.01
49 1 0.01
50 7 0.07
51 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTACAT
Found at i:49510436 original size:93 final size:93
Alignment explanation
Indices: 49510277--49510447 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
49510267 GCCCATAAGT
* * *
49510277 GAACTCGGACTCAACTCAATGAGCTCGGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAATGAGCTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
49510342 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* **
49510370 GAACTCAGACTCAACTCAA-GAAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAATG-AGCTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
*
49510434 ACGAGTTCGGATGC
65 ACGAGCTCGGATGC
49510448 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAATGAGCTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:49512325 original size:44 final size:41
Alignment explanation
Indices: 49512253--49512417 Score: 145
Period size: 43 Copynumber: 3.9 Consensus size: 41
49512243 TTTCTATATG
* *
49512253 TGATTTCGTATAAGACCACGTCTGGGACGTTGGCATCGATTT
1 TGATTTCGTGTAAGACCACGTCTAGGACGTTGGCATC-ATTT
* *
49512295 GAGATTTACGTGTAAGACCATGTCTAGGACGTTGGCATCATATT
1 -TGATTT-CGTGTAAGACCACGTCTAGGACGTTGGCATCAT-TT
* * *
49512339 TGATTTTGTGTAAGACC-CTGTCTGGGACAG-TGACATCTATTTT
1 TGATTTCGTGTAAGACCAC-GTCTAGGAC-GTTGGCATC-A-TTT
* * * *
49512382 TGATTACCTGTAAGACCACGTTTAGAACGTTGGCAT
1 TGATTTCGTGTAAGACCACGTCTAGGACGTTGGCAT
49512418 TGTACGAGCT
Statistics
Matches: 98, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
42 25 0.26
43 41 0.42
44 32 0.33
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCACGTCTAGGACGTTGGCATCATTT
Found at i:49514627 original size:41 final size:41
Alignment explanation
Indices: 49514566--49514688 Score: 201
Period size: 41 Copynumber: 3.0 Consensus size: 41
49514556 AAAAGCCACC
*
49514566 GGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAATT
1 GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATT
* * *
49514607 GGTGGATCCACGGTCATCAAGCAACCATGCGATCCTCAATC
1 GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATT
*
49514648 GGTGGATCCACGGTTGTCAAGCAACCATGCGATCCTTAATT
1 GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATT
49514689 TCTTCCTCCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (41 bp):
GGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATT
Found at i:49515075 original size:26 final size:27
Alignment explanation
Indices: 49514924--49515317 Score: 309
Period size: 27 Copynumber: 14.7 Consensus size: 27
49514914 TTTCACCCTA
* * * * *
49514924 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * *
49514951 CAAGGGTATTTCGATAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * **
49514978 CAATGGTATTTCT-ATAATTTTTAAAAGT
1 CAAGGGTATTT-TGGTAATTTTGCAAA-T
* *
49515006 CAATGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTGCAAAT
*
49515033 CAAGGGTATTTTTGTAATTTTGCAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
*
49515060 C-AGGGTATTTTGGTAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * *
49515086 CAGGGGTATTTTGATAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * * *
49515113 CGAGGGTATTTTGATAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * **
49515140 CAAGGGTATTTCGGT-ATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * *
49515166 CGAGGGTATTTCGGTAATTCAT--AAAT
1 CAAGGGTATTTTGGTAATT-TTGCAAAT
* *
49515192 CAAGGGTATTTTGTTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* *
49515218 CCAGGGATATTTTGGTAATTTTGCTAAT
1 CAAGGG-TATTTTGGTAATTTTGCAAAT
* * *
49515246 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAT
** * *
49515273 CAAGGGTA-TTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAT
*
49515299 CAAGGGTATTTTAGTAATT
1 CAAGGGTATTTTGGTAATT
49515318 CTACCCTACA
Statistics
Matches: 308, Mismatches: 48, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
25 1 0.00
26 96 0.31
27 182 0.59
28 29 0.09
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGCAAAT
Found at i:49515086 original size:53 final size:54
Alignment explanation
Indices: 49514924--49515317 Score: 304
Period size: 53 Copynumber: 7.4 Consensus size: 54
49514914 TTTCACCCTA
* * * * * * * *
49514924 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCGATAATTTTGCAAAC
1 CAAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTGCAAAT
* * * * *
49514978 CAATGGTATTTCTATAATTTTTA-AAAGTCAATGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTTTTGTAA-TTTTACAAA-TCAAGGGTATTT-TGGTAATTTTGCAAAT
* *
49515033 CAAGGGTATTTTTGTAATTTTGCAAATC-AGGGTATTTTGGTAATTTTCCAAAT
1 CAAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTGCAAAT
* * * * *
49515086 CAGGGGTA-TTTTGATAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAGT
1 CAAGGGTATTTTTG-TAATTTTACAAATCAAGGGTATTTTGGTAATTTTGCAAAT
** ** * * *
49515140 CAAGGGTATTTCGGT-ATTTTACAGGTCGAGGGTATTTCGGTAATTCAT--AAAT
1 CAAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTGGTAATT-TTGCAAAT
* *
49515192 CAAGGGTA-TTTTGTTAATTTTACAAA-CCAGGGATATTTTGGTAATTTTGCTAAT
1 CAAGGGTATTTTTG-TAATTTTACAAATCAAGGG-TATTTTGGTAATTTTGCAAAT
* * ** * ** * *
49515246 CGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTA-TTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTGCAAAT
*
49515299 CAAGGGTATTTTAGTAATT
1 CAAGGGTATTTTTGTAATT
49515318 CTACCCTACA
Statistics
Matches: 270, Mismatches: 54, Indels: 33
0.76 0.15 0.09
Matches are distributed among these distances:
51 3 0.01
52 24 0.09
53 116 0.43
54 74 0.27
55 53 0.20
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTGCAAAT
Found at i:49515339 original size:27 final size:26
Alignment explanation
Indices: 49515309--49515406 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 26
49515299 CAAGGGTATT
49515309 TTAGTAATTCTACCCTACAGGGGCATC
1 TTAGTAATTCTA-CCTACAGGGGCATC
*
49515336 TTAGTAATT-T-CCTACAGTGGCATC
1 TTAGTAATTCTACCTACAGGGGCATC
*
49515360 TCAGTAATTCTATCCTACAGGGGCAT-
1 TTAGTAATTCTA-CCTACAGGGGCATC
*
49515386 TTCAGTAATACTAGCCTACAG
1 TT-AGTAATTCTA-CCTACAG
49515407 ATATGAGATT
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
24 21 0.34
25 1 0.02
26 2 0.03
27 37 0.61
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
TTAGTAATTCTACCTACAGGGGCATC
Found at i:49522407 original size:46 final size:46
Alignment explanation
Indices: 49522340--49522468 Score: 197
Period size: 46 Copynumber: 2.8 Consensus size: 46
49522330 TGTAACCCGC
* *
49522340 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCAT
*
49522386 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
49522432 CCATAAGTGAACTCGGACTGAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
49522469 TGCTCAATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 2 0.03
46 76 0.97
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:49532706 original size:40 final size:40
Alignment explanation
Indices: 49532643--49532766 Score: 205
Period size: 40 Copynumber: 3.1 Consensus size: 40
49532633 ACTAAAATCT
* *
49532643 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
49532683 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
* *
49532723 GAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
49532762 GAAGG
1 GAAGG
49532767 TACTTGGGTT
Statistics
Matches: 80, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 15 0.19
40 65 0.81
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
Found at i:49536403 original size:70 final size:70
Alignment explanation
Indices: 49536317--49536476 Score: 203
Period size: 70 Copynumber: 2.3 Consensus size: 70
49536307 CTATATATAA
* * ** *
49536317 CACTTAGTGTGGGAAACATTAAGTAAGGCACTTAGTGTGTAGAATTATAATAACTTCGGCTATGC
1 CACTTAGTGTGCGAAACATCAAGTAACACACTTAGTGTGCAGAATTATAATAACTTCGGCTATGC
*
49536382 GATGG
66 AATGG
* * * *
49536387 CATTTAGTGTGCGAAACATCGAGTAACACACTTAGTGTGCGGAATTATAATAGCTTCGGCTATGC
1 CACTTAGTGTGCGAAACATCAAGTAACACACTTAGTGTGCAGAATTATAATAACTTCGGCTATGC
49536452 AATGG
66 AATGG
* * *
49536457 CGCTTAGTGCGCAAAACATC
1 CACTTAGTGTGCGAAACATC
49536477 GGGTATTCGA
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
70 76 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (70 bp):
CACTTAGTGTGCGAAACATCAAGTAACACACTTAGTGTGCAGAATTATAATAACTTCGGCTATGC
AATGG
Found at i:49539277 original size:29 final size:28
Alignment explanation
Indices: 49539240--49539346 Score: 117
Period size: 29 Copynumber: 3.8 Consensus size: 28
49539230 ATAATATAAT
49539240 TTGGGCCTAATGGGCCATATGAATGAGAA
1 TTGGGCCTAATGGGCCATATGAAT-AGAA
* * *
49539269 TTGGACCTAGTGGGCCATAAGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATA-GAA
* * *
49539298 CTGGGCCAAATGGGCCATTTGAATA-AGA
1 TTGGGCCTAATGGGCCATATGAATAGA-A
*
49539326 TTGGGCCTAGTGGGCCATATG
1 TTGGGCCTAATGGGCCATATG
49539347 CATGTATGTA
Statistics
Matches: 63, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
27 1 0.02
28 19 0.30
29 43 0.68
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATAGAA
Found at i:49551122 original size:46 final size:47
Alignment explanation
Indices: 49551069--49551333 Score: 260
Period size: 46 Copynumber: 5.7 Consensus size: 47
49551059 TGTGTGTGCT
49551069 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGATTATGAGAGCC
* * * * *
49551115 AGTGTAAGACCATGTTTGGGACATGGCATCGG-CATTGA-GACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGATTATGAGAGCC
* * *
49551163 AGTGTAAGACATGTCTGGGACATGCGTCGGCCTCGA-GATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGATTATG-AGAGCC
* * * *
49551209 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-CAT--GTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGATTATGAGAGCC
* *
49551253 AGTGTAAGACATGTCTGGGACATGCAACGG-CACGGATATGTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-GAT-TATGAGAGCC
*
49551301 AATGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
49551334 ATTATACCCT
Statistics
Matches: 179, Mismatches: 25, Indels: 25
0.78 0.11 0.11
Matches are distributed among these distances:
43 2 0.01
44 33 0.18
46 59 0.33
47 30 0.17
48 34 0.19
49 15 0.08
50 6 0.03
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGATTATGAGAGCC
Found at i:49551333 original size:140 final size:139
Alignment explanation
Indices: 49551069--49551333 Score: 331
Period size: 140 Copynumber: 1.9 Consensus size: 139
49551059 TGTGTGTGCT
* *
49551069 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTTTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATCAT-AGAGCCAGTGTAAGACCATGTCTGG
* ** * * *
49551134 GACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGCGTCGGCCTCGA
65 GACATGGCAACGGCACGGAGACGAGAGCCAATGTAAGACATGTCTGGGACATGCATCGGCCTCGA
49551199 GATGTAAGCC
130 GATGTAAGCC
* * *
49551209 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-CAT-GTGCTAGTGTAAGA-CATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATCATAGAGCCAGTGTAAGACCATGTCTGG
* *
49551271 GACAT-GCAACGGCACGGATATGTGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGC
65 GACATGGCAACGGCACGGAGA--CGAGAGCCAATGTAAGA-CATGTCTGGGACAT-GCATCGGC
49551334 ATTATACCCT
Statistics
Matches: 107, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
136 11 0.10
137 13 0.12
138 26 0.24
139 14 0.13
140 42 0.39
141 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (139 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATCATAGAGCCAGTGTAAGACCATGTCTGGG
ACATGGCAACGGCACGGAGACGAGAGCCAATGTAAGACATGTCTGGGACATGCATCGGCCTCGAG
ATGTAAGCC
Found at i:49554991 original size:46 final size:45
Alignment explanation
Indices: 49554924--49555097 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 45
49554914 TGTAACCCGC
*
49554924 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
* * *
49554970 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTAGCAT
* *** ** * * *
49555016 ACATCTCTCGAACTCGGACTCAACTCAAC-AATTCAGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
*
49555062 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
49555098 ATGCCCAAAC
Statistics
Matches: 100, Mismatches: 22, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
44 1 0.01
45 22 0.22
46 54 0.54
47 21 0.21
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTAGCAT
Found at i:49555098 original size:92 final size:93
Alignment explanation
Indices: 49554932--49555102 Score: 263
Period size: 92 Copynumber: 1.8 Consensus size: 93
49554922 GCCCATAAGT
* * * *
49554932 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAACTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
49554997 TGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
49555025 GAACTCGGACTCAACTCAAC-AATTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAACTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
49555089 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
49555103 CAAACATCCT
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
92 50 0.71
93 20 0.29
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAACTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:49557530 original size:30 final size:30
Alignment explanation
Indices: 49557486--49557574 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
49557476 CAAAGATAAT
49557486 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
49557515 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
49557545 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
49557575 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:49557534 original size:15 final size:15
Alignment explanation
Indices: 49557486--49557565 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
49557476 CAAAGATAAT
*
49557486 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
49557500 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
49557515 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
49557530 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
49557545 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
49557560 AAGAAA
1 AAGAAA
49557566 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:49557574 original size:15 final size:15
Alignment explanation
Indices: 49557497--49557574 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
49557487 AGAAAACCGA
49557497 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
49557512 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
49557526 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
49557541 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
49557557 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
49557572 ATA
1 ATA
49557575 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:49573155 original size:87 final size:87
Alignment explanation
Indices: 49573009--49573173 Score: 253
Period size: 87 Copynumber: 1.9 Consensus size: 87
49572999 AGGCTAAGTG
* *
49573009 TAACACCCCTAACTCGTATCCATCGCTGGAATAGGGTTACGGAGCATTATCGAACTTATAACACA
1 TAACACCCCTAACCCGTATCCATCGCTGGAAGAGGGTTACGGAGCATTATCGAACTTATAACACA
*
49573074 ATTGAACATACATAAATAAATA
66 ATCGAACATACATAAATAAATA
*
49573096 TAACACCCCTAACCCGTATCCATTG-TCGGAAGAGGGTTACGGAGCATTA-CTGAACTTATAACA
1 TAACACCCCTAACCCGTATCCATCGCT-GGAAGAGGGTTACGGAGCATTATC-GAACTTATAACA
*
49573159 TAATCGAACATACAT
64 CAATCGAACATACAT
49573174 TTCACATACA
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
86 2 0.03
87 69 0.97
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (87 bp):
TAACACCCCTAACCCGTATCCATCGCTGGAAGAGGGTTACGGAGCATTATCGAACTTATAACACA
ATCGAACATACATAAATAAATA
Found at i:49577381 original size:27 final size:26
Alignment explanation
Indices: 49577351--49577403 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
49577341 ATTCAACATC
* * *
49577351 TAGGGGTATTTTGGTCATTTTCGCCTT
1 TAGGGGCATTTCGGTAATTTTC-CCTT
49577378 TAGGGGCATTTCGGTAATTTTCCCTT
1 TAGGGGCATTTCGGTAATTTTCCCTT
49577404 AATTATGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.13, C:0.17, G:0.25, T:0.45
Consensus pattern (26 bp):
TAGGGGCATTTCGGTAATTTTCCCTT
Found at i:49577750 original size:29 final size:29
Alignment explanation
Indices: 49577711--49577787 Score: 127
Period size: 29 Copynumber: 2.7 Consensus size: 29
49577701 CATTATATTC
*
49577711 ATATGGCCCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
49577740 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
49577769 ATATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
49577788 GTCACATTCA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:49577758 original size:56 final size:57
Alignment explanation
Indices: 49577678--49577787 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
49577668 AAATTCGCAT
* * *
49577678 ACCTGTATCTGGCCCATTAAGCCC-ATTATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
49577734 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCA
49577788 GTCACATTCA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
56 22 0.48
58 24 0.52
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.27
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:49596776 original size:17 final size:18
Alignment explanation
Indices: 49596754--49596788 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
49596744 TCACATTGAA
49596754 TTGTTTT-ATCGAAAACC
1 TTGTTTTCATCGAAAACC
*
49596771 TTGTTTTCATTGAAAACC
1 TTGTTTTCATCGAAAACC
49596789 CTTCCTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (18 bp):
TTGTTTTCATCGAAAACC
Found at i:49597955 original size:29 final size:28
Alignment explanation
Indices: 49597888--49598012 Score: 151
Period size: 29 Copynumber: 4.4 Consensus size: 28
49597878 AAGTCTACAT
* * * *
49597888 ACATGCATATGGCCTACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCAAATC
*
49597916 TCATTCATATGGCCCATTAGGCCTAAATC
1 ACATTCATATGGCCCATTAGGCC-AAATC
*
49597945 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGG-CCAAATC
*
49597974 ACATTCATACGGCCCATTAGGCCAAAATC
1 ACATTCATATGGCCCATTAGGCC-AAATC
*
49598003 ACTTTCATAT
1 ACATTCATAT
49598013 ACATGCTTTC
Statistics
Matches: 83, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
28 21 0.25
29 60 0.72
30 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCAAATC
Found at i:49597957 original size:57 final size:58
Alignment explanation
Indices: 49597895--49598004 Score: 168
Period size: 58 Copynumber: 1.9 Consensus size: 58
49597885 CATACATGCA
* * * *
49597895 TATGGCCTACTAGGCCC-AATCTCATTCATATGGCCCATTAGGCCTAAATCACATTCG
1 TATGGCCCACTAGGCCCAAATCACATTCATACGGCCCATTAGGCCAAAATCACATTCG
*
49597952 TATGGCCCATTAGGCCCAAATCACATTCATACGGCCCATTAGGCCAAAATCAC
1 TATGGCCCACTAGGCCCAAATCACATTCATACGGCCCATTAGGCCAAAATCAC
49598005 TTTCATATAC
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 15 0.32
58 32 0.68
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (58 bp):
TATGGCCCACTAGGCCCAAATCACATTCATACGGCCCATTAGGCCAAAATCACATTCG
Found at i:49598660 original size:29 final size:28
Alignment explanation
Indices: 49598593--49598717 Score: 151
Period size: 29 Copynumber: 4.4 Consensus size: 28
49598583 AAGTCTACAT
* * * *
49598593 ACATGCATATGGCCTACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCAAATC
*
49598621 TCATTCATATGGCCCATTAGGCCTAAATC
1 ACATTCATATGGCCCATTAGGCC-AAATC
*
49598650 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGG-CCAAATC
*
49598679 ACATTCATACGGCCCATTAGGCCAAAATC
1 ACATTCATATGGCCCATTAGGCC-AAATC
*
49598708 ACTTTCATAT
1 ACATTCATAT
49598718 ACATGCTTTC
Statistics
Matches: 83, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
28 21 0.25
29 60 0.72
30 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCAAATC
Found at i:49598662 original size:57 final size:58
Alignment explanation
Indices: 49598600--49598709 Score: 168
Period size: 58 Copynumber: 1.9 Consensus size: 58
49598590 CATACATGCA
* * * *
49598600 TATGGCCTACTAGGCCC-AATCTCATTCATATGGCCCATTAGGCCTAAATCACATTCG
1 TATGGCCCACTAGGCCCAAATCACATTCATACGGCCCATTAGGCCAAAATCACATTCG
*
49598657 TATGGCCCATTAGGCCCAAATCACATTCATACGGCCCATTAGGCCAAAATCAC
1 TATGGCCCACTAGGCCCAAATCACATTCATACGGCCCATTAGGCCAAAATCAC
49598710 TTTCATATAC
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 15 0.32
58 32 0.68
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (58 bp):
TATGGCCCACTAGGCCCAAATCACATTCATACGGCCCATTAGGCCAAAATCACATTCG
Found at i:49599012 original size:705 final size:705
Alignment explanation
Indices: 49597663--49599067 Score: 2783
Period size: 705 Copynumber: 2.0 Consensus size: 705
49597653 AAGTGAACAG
49597663 ATACTATGCACCATATAGGATTCCAGAGAAGAGGAGGTGAGTCATTAAGACCGCTTAAGTACCAA
1 ATACTATGCACCATATAGGATTCCAGAGAAGAGGAGGTGAGTCATTAAGACCGCTTAAGTACCAA
49597728 GCTCTCCCTAGATCCAATCCTAGACATGCATATACCCATTACCACACCTTAACCTTATGACTCGT
66 GCTCTCCCTAGATCCAATCCTAGACATGCATATACCCATTACCACACCTTAACCTTATGACTCGT
49597793 CCACGGTCGCAATTAATTAATTAATTTTTATGTCAATTAAATAGTTGTCAGATACTAGGCCCAAA
131 CCACGGTCGCAATTAATTAATTAATTTTTATGTCAATTAAATAGTTGTCAGATACTAGGCCCAAA
49597858 ACCCCTTACAGAGCCTAAACAAGTCTACATACATGCATATGGCCTACTAGGCCCAATCTCATTCA
196 ACCCCTTACAGAGCCTAAACAAGTCTACATACATGCATATGGCCTACTAGGCCCAATCTCATTCA
49597923 TATGGCCCATTAGGCCTAAATCACATTCGTATGGCCCATTAGGCCCAAATCACATTCATACGGCC
261 TATGGCCCATTAGGCCTAAATCACATTCGTATGGCCCATTAGGCCCAAATCACATTCATACGGCC
49597988 CATTAGGCCAAAATCACTTTCATATACATGCTTTCATATAATTTCCATCACTTAACATCAAGTTG
326 CATTAGGCCAAAATCACTTTCATATACATGCTTTCATATAATTTCCATCACTTAACATCAAGTTG
49598053 CCAATTTTGCCTATTATGGGCCCAACAGCCTATCGGGCCCACTTAGCCCATCCTGGCCCGGTTGG
391 CCAATTTTGCCTATTATGGGCCCAACAGCCTATCGGGCCCACTTAGCCCATCCTGGCCCGGTTGG
49598118 CCAAAACACGGCCCAAGTTCATGGAATCGCCCATCGGACCTCAAATAACCTATTGGTTTCACCCT
456 CCAAAACACGGCCCAAGTTCATGGAATCGCCCATCGGACCTCAAATAACCTATTGGTTTCACCCT
49598183 TACGAGTGTTCGCGCACTCGCAAGACTACCGTAGCTAAACTTTCAGCTTTTTGGCATTTCAGCTT
521 TACGAGTGTTCGCGCACTCGCAAGACTACCGTAGCTAAACTTTCAGCTTTTTGGCATTTCAGCTT
49598248 TTGCCTATCTACTGTGTGTGTGCAGTGTATGTACACACCTGGTAATAAAGTGTGCTGCGATCCCC
586 TTGCCTATCTACTGTGTGTGTGCAGTGTATGTACACACCTGGTAATAAAGTGTGCTGCGATCCCC
49598313 CTCACCATGAACCTACAATCGATATCACTCAATGATTACTCACATATACTCACAT
651 CTCACCATGAACCTACAATCGATATCACTCAATGATTACTCACATATACTCACAT
49598368 ATACTATGCACCATATAGGATTCCAGAGAAGAGGAGGTGAGTCATTAAGACCGCTTAAGTACCAA
1 ATACTATGCACCATATAGGATTCCAGAGAAGAGGAGGTGAGTCATTAAGACCGCTTAAGTACCAA
49598433 GCTCTCCCTAGATCCAATCCTAGACATGCATATACCCATTACCACACCTTAACCTTATGACTCGT
66 GCTCTCCCTAGATCCAATCCTAGACATGCATATACCCATTACCACACCTTAACCTTATGACTCGT
49598498 CCACGGTCGCAATTAATTAATTAATTTTTATGTCAATTAAATAGTTGTCAGATACTAGGCCCAAA
131 CCACGGTCGCAATTAATTAATTAATTTTTATGTCAATTAAATAGTTGTCAGATACTAGGCCCAAA
49598563 ACCCCTTACAGAGCCTAAACAAGTCTACATACATGCATATGGCCTACTAGGCCCAATCTCATTCA
196 ACCCCTTACAGAGCCTAAACAAGTCTACATACATGCATATGGCCTACTAGGCCCAATCTCATTCA
49598628 TATGGCCCATTAGGCCTAAATCACATTCGTATGGCCCATTAGGCCCAAATCACATTCATACGGCC
261 TATGGCCCATTAGGCCTAAATCACATTCGTATGGCCCATTAGGCCCAAATCACATTCATACGGCC
49598693 CATTAGGCCAAAATCACTTTCATATACATGCTTTCATATAATTTCCATCACTTAACATCAAGTTG
326 CATTAGGCCAAAATCACTTTCATATACATGCTTTCATATAATTTCCATCACTTAACATCAAGTTG
49598758 CCAATTTTGCCTATTATGGGCCCAACAGCCTATCGGGCCCACTTAGCCCATCCTGGCCCGGTTGG
391 CCAATTTTGCCTATTATGGGCCCAACAGCCTATCGGGCCCACTTAGCCCATCCTGGCCCGGTTGG
* *
49598823 CCAAAACACGGCCCAAGTTCATGGAATCGCCCATCGGGCCTCATATAACCTATTGGTTTCACCCT
456 CCAAAACACGGCCCAAGTTCATGGAATCGCCCATCGGACCTCAAATAACCTATTGGTTTCACCCT
49598888 TACGAGTGTTCGCGCACTCGCAAGACTACCGTAGCTAAACTTTCAGCTTTTTGGCATTTCAGCTT
521 TACGAGTGTTCGCGCACTCGCAAGACTACCGTAGCTAAACTTTCAGCTTTTTGGCATTTCAGCTT
49598953 TTGCCTATCTACTGTGTGTGTGCAGTGTATGTACACACCTGGTAATAAAGTGTGCTGCGATCCCC
586 TTGCCTATCTACTGTGTGTGTGCAGTGTATGTACACACCTGGTAATAAAGTGTGCTGCGATCCCC
*
49599018 CTTACCATGAACCTACAATCGATATCACTCAATGATTACTCACATATACT
651 CTCACCATGAACCTACAATCGATATCACTCAATGATTACTCACATATACT
49599068 TATCGAATAC
Statistics
Matches: 697, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
705 697 1.00
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (705 bp):
ATACTATGCACCATATAGGATTCCAGAGAAGAGGAGGTGAGTCATTAAGACCGCTTAAGTACCAA
GCTCTCCCTAGATCCAATCCTAGACATGCATATACCCATTACCACACCTTAACCTTATGACTCGT
CCACGGTCGCAATTAATTAATTAATTTTTATGTCAATTAAATAGTTGTCAGATACTAGGCCCAAA
ACCCCTTACAGAGCCTAAACAAGTCTACATACATGCATATGGCCTACTAGGCCCAATCTCATTCA
TATGGCCCATTAGGCCTAAATCACATTCGTATGGCCCATTAGGCCCAAATCACATTCATACGGCC
CATTAGGCCAAAATCACTTTCATATACATGCTTTCATATAATTTCCATCACTTAACATCAAGTTG
CCAATTTTGCCTATTATGGGCCCAACAGCCTATCGGGCCCACTTAGCCCATCCTGGCCCGGTTGG
CCAAAACACGGCCCAAGTTCATGGAATCGCCCATCGGACCTCAAATAACCTATTGGTTTCACCCT
TACGAGTGTTCGCGCACTCGCAAGACTACCGTAGCTAAACTTTCAGCTTTTTGGCATTTCAGCTT
TTGCCTATCTACTGTGTGTGTGCAGTGTATGTACACACCTGGTAATAAAGTGTGCTGCGATCCCC
CTCACCATGAACCTACAATCGATATCACTCAATGATTACTCACATATACTCACAT
Found at i:49601181 original size:121 final size:122
Alignment explanation
Indices: 49600943--49601182 Score: 464
Period size: 121 Copynumber: 2.0 Consensus size: 122
49600933 AAATAAGCCA
49600943 ATATTAATTTATAATTGAAATATTTACAGATAAATATATATCCATCAACCATGCTTAACTTCATT
1 ATATTAATTTATAATTGAAATATTTACAGATAAATATATATCCATCAACCATGCTTAACTTCATT
49601008 TAAGCTAATTCATAAAAATATGCATATACAAAACATACCATTATAACAAGCTTGACC
66 TAAGCTAATTCATAAAAATATGCATATACAAAACATACCATTATAACAAGCTTGACC
*
49601065 ATATTAATTTATAATTGAAAT-TTTACATATAAATATATATCCATCAACCATGCTTAACTTCATT
1 ATATTAATTTATAATTGAAATATTTACAGATAAATATATATCCATCAACCATGCTTAACTTCATT
49601129 TAAGCTAATTCATAAAAATATGCATATACAAAACATACCATTATAACAAGCTTG
66 TAAGCTAATTCATAAAAATATGCATATACAAAACATACCATTATAACAAGCTTG
49601183 CCAAAATGAA
Statistics
Matches: 117, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
121 96 0.82
122 21 0.18
ACGTcount: A:0.44, C:0.16, G:0.05, T:0.35
Consensus pattern (122 bp):
ATATTAATTTATAATTGAAATATTTACAGATAAATATATATCCATCAACCATGCTTAACTTCATT
TAAGCTAATTCATAAAAATATGCATATACAAAACATACCATTATAACAAGCTTGACC
Found at i:49603404 original size:29 final size:30
Alignment explanation
Indices: 49603371--49603434 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
49603361 TAAGTAGCCG
*
49603371 AAGCTAG-TTAAATCCCACACTTAGTGCCA
1 AAGCTAGTTTAAATCCCACACTTAATGCCA
*
49603400 AAGCTAGTTTAAATGCCACACTTAATGCCA
1 AAGCTAGTTTAAATCCCACACTTAATGCCA
49603430 AAGCT
1 AAGCT
49603435 CCCGATTCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.22
30 25 0.78
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (30 bp):
AAGCTAGTTTAAATCCCACACTTAATGCCA
Done.