Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 149 of 344
Found at i:49604925 original size:45 final size:44
Alignment explanation
Indices: 49604783--49604954 Score: 160
Period size: 45 Copynumber: 4.0 Consensus size: 44
49604773 ATATCAAACA
* * *
49604783 ATGCTAACGTCCCAGACATGGTCTTACATGCT-ATCTC-ATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-TAATCACAATATCG
* * *
49604826 ATGCC-ACTATCCCAGACAGGGTCTTACA-GGAATCA-AATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCACAATATCG
* * *
49604867 ATGTCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACA-ATATCG
* * *
49604912 ATGCCAACGTCCCAGACATGGACTTACACGAAAACAC-ATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACAATATCG
49604955 GATCCTATGT
Statistics
Matches: 105, Mismatches: 16, Indels: 16
0.77 0.12 0.12
Matches are distributed among these distances:
41 24 0.23
42 15 0.14
43 29 0.28
44 3 0.03
45 34 0.32
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACAATATCG
Found at i:49620278 original size:93 final size:93
Alignment explanation
Indices: 49620169--49620340 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
49620159 GCCCATAAAT
* * *
49620169 GAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
49620234 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
49620262 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
49620327 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
49620341 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:49620336 original size:46 final size:46
Alignment explanation
Indices: 49620161--49620336 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
49620151 TGTAACCCGC
* * *
49620161 CCATAAATGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
49620207 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
49620253 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
49620300 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
49620337 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 67 0.62
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:49620355 original size:46 final size:44
Alignment explanation
Indices: 49620168--49620355 Score: 109
Period size: 46 Copynumber: 4.1 Consensus size: 44
49620158 CGCCCATAAA
* * * *
49620168 TGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGC--ATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCCCAAATCC-T-AG
* *
49620214 TGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT--
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CTAG
* * * *
49620261 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGC--ATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T-AG
49620307 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCTAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCTAG
49620353 TGA
1 TGA
49620356 CATGTCACTT
Statistics
Matches: 111, Mismatches: 14, Indels: 34
0.70 0.09 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 7 0.06
45 2 0.02
46 58 0.52
47 27 0.24
48 4 0.04
49 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCTAG
Found at i:49627853 original size:30 final size:31
Alignment explanation
Indices: 49627819--49627879 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
49627809 TGCAAGCTGA
49627819 TCAGCTCG-ATCCTAGC-CTATTGAGCTTGAT
1 TCAGCTCGAATCCTAGCTC-ATTGAGCTTGAT
**
49627849 TCAGCTCGAATTTTAGCTCATTGAGCTTGAT
1 TCAGCTCGAATCCTAGCTCATTGAGCTTGAT
49627880 CTGGCTCAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 8 0.30
31 18 0.67
32 1 0.04
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (31 bp):
TCAGCTCGAATCCTAGCTCATTGAGCTTGAT
Found at i:49627896 original size:30 final size:31
Alignment explanation
Indices: 49627837--49627905 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 31
49627827 ATCCTAGCCT
*
49627837 ATTGAGCTTGATTCAGCTCGAATTTTAGCTC
1 ATTGAGCTTGATTCAGCTCGAACTTTAGCTC
* *
49627868 ATTGAGCTTGA-TCTGGCTC-AACTTTAGCTT
1 ATTGAGCTTGATTC-AGCTCGAACTTTAGCTC
49627898 ATTGAGCT
1 ATTGAGCT
49627906 CGTTCCATCT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
30 19 0.56
31 15 0.44
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (31 bp):
ATTGAGCTTGATTCAGCTCGAACTTTAGCTC
Found at i:49627995 original size:18 final size:17
Alignment explanation
Indices: 49627981--49628025 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
49627971 AGTTAATTTA
*
49627981 GTTTAAGTAACTAATGT
1 GTTTAAGTAACTAATAT
*
49627998 GTCTTAAGTTAATTAATAT
1 GT-TTAAG-TAACTAATAT
49628017 GTTTAAGTA
1 GTTTAAGTA
49628026 TTTTTAGCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 4 0.17
18 10 0.42
19 10 0.42
ACGTcount: A:0.36, C:0.04, G:0.16, T:0.44
Consensus pattern (17 bp):
GTTTAAGTAACTAATAT
Found at i:49628831 original size:11 final size:11
Alignment explanation
Indices: 49628811--49628846 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
49628801 CTCCCATGCT
49628811 AGGAAACTTCA
1 AGGAAACTTCA
*
49628822 AGGAACCTTCA
1 AGGAAACTTCA
*
49628833 AGGAAGCTTCA
1 AGGAAACTTCA
49628844 AGG
1 AGG
49628847 GATGTTCTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.39, C:0.19, G:0.25, T:0.17
Consensus pattern (11 bp):
AGGAAACTTCA
Found at i:49628858 original size:22 final size:22
Alignment explanation
Indices: 49628809--49628860 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
49628799 GTCTCCCATG
*
49628809 CTAGGAAACTTCAAGGAACCTT
1 CTAGGAAGCTTCAAGGAACCTT
* * **
49628831 CAAGGAAGCTTCAAGGGATGTT
1 CTAGGAAGCTTCAAGGAACCTT
49628853 CTAGGAAG
1 CTAGGAAG
49628861 TTGCTAAGAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.21
Consensus pattern (22 bp):
CTAGGAAGCTTCAAGGAACCTT
Found at i:49631820 original size:27 final size:27
Alignment explanation
Indices: 49631790--49631967 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
49631780 ATATTGAGTC
* * * *
49631790 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
49631817 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
49631844 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
49631872 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
49631899 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
49631926 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
49631953 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
49631968 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:49631929 original size:82 final size:81
Alignment explanation
Indices: 49631811--49631966 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
49631801 TGCTATATAA
* *
49631811 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
49631876 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
49631893 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
49631957 CACTTAGTGC
65 CACTTAGTGC
49631967 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:49631981 original size:82 final size:83
Alignment explanation
Indices: 49631790--49631981 Score: 216
Period size: 82 Copynumber: 2.3 Consensus size: 83
49631780 ATATTGAGTC
* * * * *
49631790 CGCACACTCAGTGCTATATAA-TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTA
1 CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
*
49631854 GTGCTACATAGTCAAACT
66 GTGCAACATAGTCAAACT
* * **
49631872 CGCACACTTAGTGCCG--C-ATGGTCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACAC
1 CGCACACTTAGTGCTGTACAAT--TCAATTCGCACACTTAGTGCTA-CATAATCAAATCGCACAC
49631933 TTAGTGCAACATAGTCAAA-T
63 TTAGTGCAACATAGTCAAACT
*
49631953 CGCACACTTAGTGCTGTACAATTTAATTC
1 CGCACACTTAGTGCTGTACAATTCAATTC
49631982 CCGCGCACTT
Statistics
Matches: 91, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
79 1 0.01
81 17 0.19
82 70 0.77
83 1 0.01
84 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (83 bp):
CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
GTGCAACATAGTCAAACT
Found at i:49634060 original size:17 final size:19
Alignment explanation
Indices: 49634015--49634062 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 19
49634005 CACTTAGGTT
*
49634015 TTATTGAATGTTACTTGTAA
1 TTATTGAATGTTAATTG-AA
*
49634035 TTATGGAAT-TTAATTG-A
1 TTATTGAATGTTAATTGAA
49634052 TTATTGAATGT
1 TTATTGAATGT
49634063 AAATCGTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 9 0.38
18 1 0.04
19 6 0.25
20 8 0.33
ACGTcount: A:0.31, C:0.02, G:0.17, T:0.50
Consensus pattern (19 bp):
TTATTGAATGTTAATTGAA
Found at i:49636182 original size:16 final size:16
Alignment explanation
Indices: 49636161--49636194 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
49636151 TAGCTAGACA
49636161 CATGAAATTATTCCAG
1 CATGAAATTATTCCAG
*
49636177 CATGAAATTGTTCCAG
1 CATGAAATTATTCCAG
49636193 CA
1 CA
49636195 AAAAAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (16 bp):
CATGAAATTATTCCAG
Found at i:49636995 original size:15 final size:16
Alignment explanation
Indices: 49636975--49637012 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
49636965 TTTTTTTTTA
49636975 TTAATTTTACT-AGTT
1 TTAATTTTACTAAGTT
**
49636990 TTAATTTTTTTAAGTT
1 TTAATTTTACTAAGTT
49637006 TTAATTT
1 TTAATTT
49637013 ATAGTAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (16 bp):
TTAATTTTACTAAGTT
Found at i:49641941 original size:28 final size:28
Alignment explanation
Indices: 49641877--49642031 Score: 285
Period size: 28 Copynumber: 5.6 Consensus size: 28
49641867 CTCAATAATG
*
49641877 TCGCACACTTAGTGCTATATAATC-AAC
1 TCGCACACTTAGTGCTACATAATCAAAC
49641904 TCGCACACTTAGTGCTACATAATCAAAC
1 TCGCACACTTAGTGCTACATAATCAAAC
49641932 TCGCACACTTAGTGCTACATAATCAAAC
1 TCGCACACTTAGTGCTACATAATCAAAC
49641960 TCGCACACTTAGTGCTACATAATCAAAC
1 TCGCACACTTAGTGCTACATAATCAAAC
*
49641988 TCGCACACTTAGTGCTACATAGTCAAAC
1 TCGCACACTTAGTGCTACATAATCAAAC
49642016 TCGCACACTTAGTGCT
1 TCGCACACTTAGTGCT
49642032 GTACAATTTA
Statistics
Matches: 125, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 23 0.18
28 102 0.82
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
TCGCACACTTAGTGCTACATAATCAAAC
Found at i:49649167 original size:22 final size:22
Alignment explanation
Indices: 49649142--49649226 Score: 89
Period size: 22 Copynumber: 3.9 Consensus size: 22
49649132 CTATGATATT
* *
49649142 TACGGCCTTTAGCCGTCCTGTC
1 TACGGCGTTGAGCCGTCCTGTC
* **
49649164 TACGGCGTTGAGCCATTTTGTC
1 TACGGCGTTGAGCCGTCCTGTC
* * * *
49649186 TACGGCATTAAGTCGTCCTATC
1 TACGGCGTTGAGCCGTCCTGTC
49649208 TACGGCGTTGAGCCGTCCT
1 TACGGCGTTGAGCCGTCCT
49649227 ATTGACTTAG
Statistics
Matches: 48, Mismatches: 15, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.14, C:0.29, G:0.25, T:0.32
Consensus pattern (22 bp):
TACGGCGTTGAGCCGTCCTGTC
Found at i:49656512 original size:27 final size:27
Alignment explanation
Indices: 49656482--49656656 Score: 181
Period size: 27 Copynumber: 6.4 Consensus size: 27
49656472 ATATTGAGCC
* *
49656482 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
49656509 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
49656536 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
49656564 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
49656591 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
49656618 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
49656645 CGCACACTTAGT
1 CGCACACTTAGT
49656657 TCTGTACAAT
Statistics
Matches: 127, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:49656621 original size:82 final size:81
Alignment explanation
Indices: 49656503--49656656 Score: 229
Period size: 82 Copynumber: 1.9 Consensus size: 81
49656493 TGCTATATAA
* *
49656503 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
49656568 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
49656585 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
49656649 CACTTAGT
65 CACTTAGT
49656657 TCTGTACAAT
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 14 0.22
82 51 0.78
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:49656642 original size:54 final size:54
Alignment explanation
Indices: 49656482--49656656 Score: 201
Period size: 54 Copynumber: 3.2 Consensus size: 54
49656472 ATATTGAGCC
* * * *
49656482 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
49656536 CGCACACTTAGTGC-TACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
49656591 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
49656645 CGCACACTTAGT
1 CGCACACTTAGT
49656657 TCTGTACAAT
Statistics
Matches: 102, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
52 1 0.01
54 55 0.54
55 45 0.44
56 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:49657226 original size:13 final size:13
Alignment explanation
Indices: 49657208--49657232 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49657198 TACTAAATTT
49657208 TCATGGATTCAAG
1 TCATGGATTCAAG
49657221 TCATGGATTCAA
1 TCATGGATTCAA
49657233 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:49658028 original size:21 final size:20
Alignment explanation
Indices: 49657987--49658029 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
49657977 TATTCATCCT
* *
49657987 TTCTTTTCTTTTTAATTCAC
1 TTCTTTTATTTTTAATCCAC
49658007 TTCTTTTATTTTCTAATCCAC
1 TTCTTTTATTTT-TAATCCAC
49658028 TT
1 TT
49658030 ACCAATATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.16, C:0.21, G:0.00, T:0.63
Consensus pattern (20 bp):
TTCTTTTATTTTTAATCCAC
Found at i:49664531 original size:27 final size:27
Alignment explanation
Indices: 49664501--49664674 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
49664491 ATATTGAGCC
* *
49664501 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
49664528 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
49664555 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** * *
49664583 CGCACACTTAGTGCCGCAT-GTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
49664609 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
49664636 CGCACACTTAGT-C-ACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
49664661 CGCACAC-TAGTGCT
1 CGCACACTTAGTGCT
49664675 GTACAATTTA
Statistics
Matches: 126, Mismatches: 16, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
24 4 0.03
25 16 0.13
26 22 0.17
27 64 0.51
28 20 0.16
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:49664620 original size:81 final size:77
Alignment explanation
Indices: 49664522--49664673 Score: 207
Period size: 81 Copynumber: 1.9 Consensus size: 77
49664512 TGCTATATAA
*
49664522 TCAACTCGCACACTTAGTGC-TACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGC
1 TCAACTCGCACACTTAGTGCAT-CATAATCAAATCGCACACTTAGT-C-ACATAGTCAAA-TCGC
49664586 ACACTTAGTGCCGCATG
62 ACAC-TAGTGCCGCATG
* * **
49664603 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTCACATAGTCAAATCGCACAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTCACATAGTCAAATCGCACAC
49664668 TAGTGC
66 TAGTGC
49664674 TGTACAATTT
Statistics
Matches: 65, Mismatches: 5, Indels: 6
0.86 0.07 0.08
Matches are distributed among these distances:
77 6 0.09
78 8 0.12
79 11 0.17
80 1 0.02
81 38 0.58
82 1 0.02
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (77 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTCACATAGTCAAATCGCACAC
TAGTGCCGCATG
Found at i:49665227 original size:13 final size:13
Alignment explanation
Indices: 49665209--49665233 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49665199 TACTAAATTT
49665209 TCATGGATTCAAG
1 TCATGGATTCAAG
49665222 TCATGGATTCAA
1 TCATGGATTCAA
49665234 TATACCATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:49665985 original size:20 final size:20
Alignment explanation
Indices: 49665960--49666001 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
49665950 TATTCATCCT
* * *
49665960 TTCTTTTCTTTTTAATTCAC
1 TTCTTTTATTTCTAATCCAC
49665980 TTCTTTTATTTCTAATCCAC
1 TTCTTTTATTTCTAATCCAC
49666000 TT
1 TT
49666002 ACCAATATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.17, C:0.21, G:0.00, T:0.62
Consensus pattern (20 bp):
TTCTTTTATTTCTAATCCAC
Found at i:49676754 original size:49 final size:49
Alignment explanation
Indices: 49676624--49676819 Score: 230
Period size: 49 Copynumber: 4.0 Consensus size: 49
49676614 TCTATTGTAA
* * ** *
49676624 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTAAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAA-T-T
* * *
49676675 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATT
* * *
49676724 GGTCACATGTGTACTACTAACTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATT
* * * * *
49676773 GGTCGCAAGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAA
49676820 CTTTGGCTAC
Statistics
Matches: 125, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
49 85 0.68
50 1 0.01
51 39 0.31
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATT
Found at i:49679202 original size:26 final size:26
Alignment explanation
Indices: 49679173--49679232 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
49679163 TTTACTAAAC
** * *
49679173 TACCCCTAAGTATGGAATTACCATTA
1 TACCCCTAAGTATAAAATGACCATGA
*
49679199 TACCCCTAAGTGTAAAATGACCATGA
1 TACCCCTAAGTATAAAATGACCATGA
49679225 TACCCCTA
1 TACCCCTA
49679233 GGGTTAGTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.27
Consensus pattern (26 bp):
TACCCCTAAGTATAAAATGACCATGA
Found at i:49679377 original size:28 final size:26
Alignment explanation
Indices: 49679336--49679450 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 26
49679326 TGGAGGAAGC
49679336 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
49679363 GTTTCTGGTGGCTATGCCACAAACATCT
1 G-TTCTGGTGGCTATGCCAC-AATATCT
* *
49679391 GTTCTGATGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * *
49679417 GTATCTAGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
49679444 GTTCTGG
1 GTTCTGG
49679451 CAGTCATGCT
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
26 12 0.16
27 39 0.51
28 26 0.34
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:49681100 original size:10 final size:11
Alignment explanation
Indices: 49681076--49681126 Score: 63
Period size: 11 Copynumber: 4.9 Consensus size: 11
49681066 AAACGAGTTC
49681076 ATTGAGCTAGA
1 ATTGAGCTAGA
49681087 ATTGAGCT-GA
1 ATTGAGCTAGA
*
49681097 ATTGAGCT-CA
1 ATTGAGCTAGA
49681107 A-TGAGCTAGA
1 ATTGAGCTAGA
*
49681117 TTTGAGCTAG
1 ATTGAGCTAG
49681127 GTCAACTTGC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 6 0.17
10 13 0.37
11 16 0.46
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.29
Consensus pattern (11 bp):
ATTGAGCTAGA
Found at i:49683058 original size:15 final size:16
Alignment explanation
Indices: 49683040--49683073 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
49683030 ACACACTTTC
49683040 TTCCTTTTC-ACTCAT
1 TTCCTTTTCAACTCAT
49683055 TTCCTTTTCTAACTCAT
1 TTCCTTTTC-AACTCAT
49683072 TT
1 TT
49683074 TCAAACTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
17 8 0.47
ACGTcount: A:0.15, C:0.29, G:0.00, T:0.56
Consensus pattern (16 bp):
TTCCTTTTCAACTCAT
Found at i:49699954 original size:56 final size:56
Alignment explanation
Indices: 49699894--49700030 Score: 238
Period size: 56 Copynumber: 2.4 Consensus size: 56
49699884 TCCCAGATAA
* * *
49699894 GGTCTTACTCGTACACATATCTCGAAGTAACATATCAATGCCAACGTATAAAATGT
1 GGTCTTACTCGCACACATATATCGAAGTAACATATCAATGCCAACGTATAAAACGT
*
49699950 GGTCTTACTCGCACACATATATCGAAGTCACATATCAATGCCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTAACATATCAATGCCAACGTATAAAACGT
49700006 GGTCTTACTCGCACACATATATCGA
1 GGTCTTACTCGCACACATATATCGA
49700031 TGCTGTGGTC
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 77 1.00
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTAACATATCAATGCCAACGTATAAAACGT
Found at i:49716003 original size:27 final size:27
Alignment explanation
Indices: 49715973--49716079 Score: 119
Period size: 27 Copynumber: 3.9 Consensus size: 27
49715963 GGCTGCTAGA
* * *
49715973 ACAGATAATGTGACAGAGTCACCAAAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
*
49716000 ACAGATAATCCTGGCAGAGCCACCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
*
49716027 ACAGATATATGTGGCAAAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
*
49716055 -CAGATAATTGTGGCATAGCCACCAG
1 ACAGATAA-TGTGGCAGAGCCACCAG
49716080 GACTCTTCCT
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
26 1 0.01
27 53 0.77
28 15 0.22
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:49716059 original size:54 final size:54
Alignment explanation
Indices: 49715970--49716079 Score: 141
Period size: 54 Copynumber: 2.0 Consensus size: 54
49715960 CATGGCTGCT
* *
49715970 AGAACAGATAATGTGACAGAGTCACCAAATACAGATAATCCTGGCAGAGCCACC
1 AGAACAGATAATGTGACAAAGCCACCAAATACAGATAATCCTGGCAGAGCCACC
* * ** *
49716024 AGAACAGATATATGTGGCAAAGCCACCAGAT-CAGATAATTGTGGCATAGCCACC
1 AGAACAGATA-ATGTGACAAAGCCACCAAATACAGATAATCCTGGCAGAGCCACC
49716078 AG
1 AG
49716080 GACTCTTCCT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 32 0.67
55 16 0.33
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.16
Consensus pattern (54 bp):
AGAACAGATAATGTGACAAAGCCACCAAATACAGATAATCCTGGCAGAGCCACC
Found at i:49716516 original size:16 final size:15
Alignment explanation
Indices: 49716495--49716528 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
49716485 TCTCAAAATA
49716495 TTGGCTTTTCGGCATT
1 TTGGCTTTTCGGC-TT
49716511 TTGGCTTTTCGGCTT
1 TTGGCTTTTCGGCTT
49716526 TTG
1 TTG
49716529 CCGATCTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.03, C:0.18, G:0.26, T:0.53
Consensus pattern (15 bp):
TTGGCTTTTCGGCTT
Found at i:49722051 original size:24 final size:25
Alignment explanation
Indices: 49721998--49722071 Score: 91
Period size: 24 Copynumber: 3.1 Consensus size: 25
49721988 TCCGGGCTAT
*
49721998 ATAATCG-GAAGCTCA-TAAGAGCC
1 ATAATCGAGAAGCTCACAAAGAGCC
* * *
49722021 ATAATCGGGAAGTTCACAAAGAACC
1 ATAATCGAGAAGCTCACAAAGAGCC
49722046 AT-ATCGAGAAGCTCACAAAGAGCC
1 ATAATCGAGAAGCTCACAAAGAGCC
49722070 AT
1 AT
49722072 GTAATAGAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
23 7 0.16
24 28 0.65
25 8 0.19
ACGTcount: A:0.42, C:0.22, G:0.20, T:0.16
Consensus pattern (25 bp):
ATAATCGAGAAGCTCACAAAGAGCC
Found at i:49736504 original size:20 final size:20
Alignment explanation
Indices: 49736471--49736536 Score: 78
Period size: 20 Copynumber: 3.3 Consensus size: 20
49736461 TCCTTCGGCA
*
49736471 CCTCTAATTGCATTTTGATG
1 CCTCTGATTGCATTTTGATG
* *
49736491 CCTCTGATTTCATTTTGGTG
1 CCTCTGATTGCATTTTGATG
** *
49736511 CCTCTGATTGCGCTTTGGTG
1 CCTCTGATTGCATTTTGATG
49736531 CCTCTG
1 CCTCTG
49736537 TTTGTACTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.11, C:0.24, G:0.21, T:0.44
Consensus pattern (20 bp):
CCTCTGATTGCATTTTGATG
Found at i:49736550 original size:20 final size:20
Alignment explanation
Indices: 49736489--49736551 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
49736479 TGCATTTTGA
* * *
49736489 TGCCTCTGATTTCATTTTGG
1 TGCCTCTGATTGCACTTCGG
* *
49736509 TGCCTCTGATTGCGCTTTGG
1 TGCCTCTGATTGCACTTCGG
* *
49736529 TGCCTCTGTTTGTACTTCGG
1 TGCCTCTGATTGCACTTCGG
49736549 TGC
1 TGC
49736552 TTTTGTTAGC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.06, C:0.24, G:0.25, T:0.44
Consensus pattern (20 bp):
TGCCTCTGATTGCACTTCGG
Found at i:49744885 original size:21 final size:23
Alignment explanation
Indices: 49744856--49744898 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
49744846 TTAATGCACA
*
49744856 CACCTATACAA-CATA-ACATAG
1 CACCAATACAAGCATATACATAG
49744877 CACCAATACAAGCATATACATA
1 CACCAATACAAGCATATACATA
49744899 CAACTAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 10 0.53
22 4 0.21
23 5 0.26
ACGTcount: A:0.49, C:0.28, G:0.05, T:0.19
Consensus pattern (23 bp):
CACCAATACAAGCATATACATAG
Found at i:49757491 original size:18 final size:18
Alignment explanation
Indices: 49757457--49757506 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
49757447 ACAAAAAGAA
*
49757457 TCAAAATAATTTTTAAAAT
1 TCAAAAT-ATTTATAAAAT
49757476 TCAAAATATTTATAAAAT
1 TCAAAATATTTATAAAAT
*
49757494 TCCAAAT-TTTATA
1 TCAAAATATTTATA
49757507 TTTTTTCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.21
18 16 0.55
19 7 0.24
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (18 bp):
TCAAAATATTTATAAAAT
Found at i:49758080 original size:44 final size:46
Alignment explanation
Indices: 49757994--49758080 Score: 126
Period size: 46 Copynumber: 1.9 Consensus size: 46
49757984 AGAAGTGTAA
*
49757994 ATTAAATTATAATATTTTTAAACATGTACTAATTATCACAACTCTG
1 ATTAAATTATAATATTTTTAAACATATACTAATTATCACAACTCTG
*
49758040 ATTAAATTATAATTATTTTT-AA-ATATA-TAATTATCTCAACT
1 ATTAAATTATAA-TATTTTTAAACATATACTAATTATCACAACT
49758081 TCTATTTTAC
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
44 13 0.34
45 4 0.11
46 14 0.37
47 7 0.18
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (46 bp):
ATTAAATTATAATATTTTTAAACATATACTAATTATCACAACTCTG
Found at i:49758382 original size:13 final size:13
Alignment explanation
Indices: 49758366--49758391 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
49758356 AGAATAATTT
49758366 TTTGAAAATTTAG
1 TTTGAAAATTTAG
49758379 TTTGAAAATTTAG
1 TTTGAAAATTTAG
49758392 ACGTTTGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (13 bp):
TTTGAAAATTTAG
Found at i:49759521 original size:42 final size:42
Alignment explanation
Indices: 49759475--49759602 Score: 143
Period size: 42 Copynumber: 3.0 Consensus size: 42
49759465 ATTGCATTAT
* * *
49759475 TATGATATTTCGTATAAGATCATATCTAGGATATGGCATCGA
1 TATGAGATTTCGTGTAAGACCATATCTAGGATATGGCATCGA
* *
49759517 TATGAGA-ATCGTGTAAGACCATAGT-TAGGTTATTGGCATCGA
1 TATGAGATTTCGTGTAAGACCATA-TCTAGGATA-TGGCATCGA
* * * *
49759559 TATGAGATTTCATGTAAGACCATATCTGGGATATGACATTGA
1 TATGAGATTTCGTGTAAGACCATATCTAGGATATGGCATCGA
49759601 TA
1 TA
49759603 CGGTACTATG
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
41 19 0.27
42 33 0.46
43 19 0.27
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.34
Consensus pattern (42 bp):
TATGAGATTTCGTGTAAGACCATATCTAGGATATGGCATCGA
Found at i:49763504 original size:15 final size:15
Alignment explanation
Indices: 49763486--49763517 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
49763476 AATTTTGCTA
49763486 TTATATCTTTTATAT
1 TTATATCTTTTATAT
49763501 TTATATCTTTTATAT
1 TTATATCTTTTATAT
49763516 TT
1 TT
49763518 TGCATGCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (15 bp):
TTATATCTTTTATAT
Found at i:49765401 original size:38 final size:38
Alignment explanation
Indices: 49765342--49765463 Score: 208
Period size: 38 Copynumber: 3.2 Consensus size: 38
49765332 ATACATATGT
* * *
49765342 CATGACATAGGATTCCGATATATGTGTACGAGTAAGAC
1 CATGGCATAGGATTCCAATATATGTGTGCGAGTAAGAC
49765380 CATGGCATAGGATTCCAATATATGTGTGCGAGTAAGAC
1 CATGGCATAGGATTCCAATATATGTGTGCGAGTAAGAC
*
49765418 CATGGCATAGGATTCTAATATATGTGTGCGAGTAAGAC
1 CATGGCATAGGATTCCAATATATGTGTGCGAGTAAGAC
49765456 CATGGCAT
1 CATGGCAT
49765464 CGATATGTGA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 80 1.00
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (38 bp):
CATGGCATAGGATTCCAATATATGTGTGCGAGTAAGAC
Found at i:49774961 original size:19 final size:20
Alignment explanation
Indices: 49774924--49774961 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
49774914 ATAAGGTGGT
49774924 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
49774944 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
49774962 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:49782511 original size:19 final size:20
Alignment explanation
Indices: 49782474--49782511 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
49782464 ATAAGGTGGT
49782474 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
49782494 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
49782512 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:49788932 original size:34 final size:34
Alignment explanation
Indices: 49788894--49788958 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
49788884 TGATTAAAGA
49788894 ATTTTCTAGAAAAATTAATTTGGA-AAATTAAGTG
1 ATTTT-TAGAAAAATTAATTTGGATAAATTAAGTG
* * *
49788928 ATTTTTGGAAAAATTGATTTTGATAAATTAA
1 ATTTTTAGAAAAATTAATTTGGATAAATTAA
49788959 AATTAAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 15 0.56
34 12 0.44
ACGTcount: A:0.43, C:0.02, G:0.14, T:0.42
Consensus pattern (34 bp):
ATTTTTAGAAAAATTAATTTGGATAAATTAAGTG
Found at i:49791390 original size:62 final size:59
Alignment explanation
Indices: 49791315--49791431 Score: 146
Period size: 62 Copynumber: 1.9 Consensus size: 59
49791305 AGTGATTATC
* * * *
49791315 TTAATATTTAATTTAATTTAATGTTTATCTTGTAGATAAACATTCTATTATTTTAATAAGAT
1 TTAATATTTAATTTAATCTAATATTTATC-T-TA-ATAAACATTATATTAATTTAATAAGAT
*
49791377 TTAAT-TTTAAATTTAATCTAATATTTATCTTAATAAATATTATATTAATTTAATA
1 TTAATATTT-AATTTAATCTAATATTTATCTTAATAAACATTATATTAATTTAATA
49791432 TTAAAGTGAT
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
59 20 0.41
60 2 0.04
61 4 0.08
62 23 0.47
ACGTcount: A:0.40, C:0.04, G:0.03, T:0.52
Consensus pattern (59 bp):
TTAATATTTAATTTAATCTAATATTTATCTTAATAAACATTATATTAATTTAATAAGAT
Found at i:49794426 original size:27 final size:27
Alignment explanation
Indices: 49794395--49794572 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
49794385 TGAATTGTAC
49794395 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * ** *
49794422 TGCACTAAGTGTGAGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49794448 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
49794476 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
49794504 AGCACTAAGTGTCCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
49794531 AGCACTAAGTGTGTGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
49794558 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49794573 GAATCAATAT
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 101 0.82
28 22 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:49794563 original size:82 final size:81
Alignment explanation
Indices: 49794392--49794572 Score: 202
Period size: 82 Copynumber: 2.2 Consensus size: 81
49794382 GATTGAATTG
* * *
49794392 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGAGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTCAGAAATGAATACGATGCACTAA
49794457 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
49794473 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTCCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTCAGAAATGAATACGAT-GCACT
* * **
49794537 AAGTGTGTGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
49794555 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
49794573 GAATCAATAT
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
81 18 0.22
82 63 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTCAGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:49802573 original size:27 final size:27
Alignment explanation
Indices: 49802542--49802719 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
49802532 TGAATTGTAC
49802542 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
49802569 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49802595 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
49802623 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
49802651 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49802678 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
49802705 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49802720 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:49802656 original size:82 final size:81
Alignment explanation
Indices: 49802543--49802698 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
49802533 GAATTGTACA
* *
49802543 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
49802607 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
49802624 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
49802689 TGCGAGTTGA
65 TGCGAATTGA
49802699 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:49802710 original size:82 final size:81
Alignment explanation
Indices: 49802539--49802719 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
49802529 GATTGAATTG
* *
49802539 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
49802604 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
49802620 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
49802684 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
49802702 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
49802720 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:49807282 original size:43 final size:43
Alignment explanation
Indices: 49807221--49807375 Score: 267
Period size: 43 Copynumber: 3.6 Consensus size: 43
49807211 CCGGCATTAT
49807221 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
* *
49807264 GCCTGCTAGGCACGAAGGCCCGAATACACATCA-TCAGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACT-GGCACGAA
*
49807307 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
49807350 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
49807376 TAATACCAGC
Statistics
Matches: 105, Mismatches: 5, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
42 1 0.01
43 104 0.99
ACGTcount: A:0.30, C:0.32, G:0.26, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
Found at i:49807421 original size:38 final size:38
Alignment explanation
Indices: 49807368--49807663 Score: 375
Period size: 38 Copynumber: 7.8 Consensus size: 38
49807358 GGCACGAAGG
* * * *
49807368 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* *
49807406 CCAGGATATATTACCAGCACGAAGCCTACGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* * *
49807444 CCCAGATATATTA-CAACACGAAGCCTGTGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* * * *
49807481 CCGGGATATATTACTAGTACGAAGCCTACGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
49807519 CCCGGATATATTACCAGCATGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* *
49807557 CCCGGACATATTA-CAGCACGAAGCCTACGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* *
49807594 CCTGGATATGTTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
49807632 CCCGGATATAATT-CCAGCA-TATAGCCTGCGGG
1 CCCGGATAT-ATTACCAGCACGA-AGCCTGCGGG
49807664 CCTTTAGGCC
Statistics
Matches: 221, Mismatches: 33, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
37 65 0.29
38 154 0.70
39 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.23
Consensus pattern (38 bp):
CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
Found at i:49807477 original size:75 final size:76
Alignment explanation
Indices: 49807368--49807650 Score: 401
Period size: 75 Copynumber: 3.8 Consensus size: 76
49807358 GGCACGAAGG
* * * * *
49807368 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAACCAGGATATATTACCAGCACGAAGCCT
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCT
49807433 ACGGGATTTAA
66 ACGGGATTTAA
* * * * * *
49807444 CCCAGATATATTA-CAACACGAAGCCTGTGGGATTTAACCGGGATATATTACTAGTACGAAGCCT
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCT
49807508 ACGGGATTTAA
66 ACGGGATTTAA
* *
49807519 CCCGGATATATTACCAGCATGAAGCCTGCGGGATTTAACCCGGACATATTA-CAGCACGAAGCCT
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCT
49807583 ACGGGATTTAA
66 ACGGGATTTAA
* *
49807594 CCTGGATATGTTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATT-CCAGCA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT-ATTACCAGCA
49807651 TATAGCCTGC
Statistics
Matches: 182, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
75 132 0.73
76 50 0.27
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (76 bp):
CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCT
ACGGGATTTAA
Found at i:49807571 original size:113 final size:113
Alignment explanation
Indices: 49807373--49807663 Score: 406
Period size: 113 Copynumber: 2.6 Consensus size: 113
49807363 GAAGGCCCGA
* * * * * *
49807373 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCAGGATATATTACCAGCACGAAGCCTACGGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCATGAAGCCTGCGGG
* **
49807438 ATTTAACCCAGATATATTACAACACGAAGCCTGTGGGATTTAACCGGG
66 ATTTAACCCAGACATATTACAACACGAAGCCTACGGGATTTAACCGGG
* * *
49807486 ATATATTACTAGTACGAAGCCTACGGGATTTAACCCGGATATATTACCAGCATGAAGCCTGCGGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCATGAAGCCTGCGGG
* * *
49807551 ATTTAACCCGGACATATTACAGCACGAAGCCTACGGGATTTAACCTGG
66 ATTTAACCCAGACATATTACAACACGAAGCCTACGGGATTTAACCGGG
*
49807599 ATATGTTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATT-CCAGCAT-ATAGCCTGCG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT-ATTACCAGCATGA-AGCCTGCG
49807662 GG
64 GG
49807664 CCTTTAGGCC
Statistics
Matches: 157, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
112 1 0.01
113 153 0.97
114 3 0.02
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (113 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCATGAAGCCTGCGGG
ATTTAACCCAGACATATTACAACACGAAGCCTACGGGATTTAACCGGG
Found at i:49810423 original size:17 final size:17
Alignment explanation
Indices: 49810401--49810433 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
49810391 GAATACAAAT
*
49810401 AAATAACTAAAGAAAAG
1 AAATAAATAAAGAAAAG
49810418 AAATAAATAAAGAAAA
1 AAATAAATAAAGAAAA
49810434 ATAAACAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.03, G:0.09, T:0.12
Consensus pattern (17 bp):
AAATAAATAAAGAAAAG
Found at i:49818227 original size:22 final size:22
Alignment explanation
Indices: 49818199--49818242 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
49818189 GCTTAGTAAG
49818199 CTCGTATGAAAGAAATAAACTA
1 CTCGTATGAAAGAAATAAACTA
*
49818221 CTCGTATTAAAGAAATAAACTA
1 CTCGTATGAAAGAAATAAACTA
49818243 ACCTTACCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.50, C:0.14, G:0.11, T:0.25
Consensus pattern (22 bp):
CTCGTATGAAAGAAATAAACTA
Found at i:49819394 original size:27 final size:27
Alignment explanation
Indices: 49819319--49819444 Score: 106
Period size: 27 Copynumber: 4.9 Consensus size: 27
49819309 AACAGACATC
* * *
49819319 ACATAGGGGTAAAACAGTCATCTTACC
1 ACATAAGGGTAAAACAGTCATTTTACT
* * *
49819346 ATAAAAGGGCAAAACAGTCATTTTACT
1 ACATAAGGGTAAAACAGTCATTTTACT
49819373 ACATAAGGGTAAAACAGTCA--TT--T
1 ACATAAGGGTAAAACAGTCATTTTACT
* *
49819396 ---TAAGGGTAAAATAGTTATTTTACCT
1 ACATAAGGGTAAAACAGTCATTTTA-CT
*
49819421 -CATAAGGGCAAAACAGTCATTTTA
1 ACATAAGGGTAAAACAGTCATTTTA
49819445 TTAACTTAGG
Statistics
Matches: 78, Mismatches: 14, Indels: 14
0.74 0.13 0.13
Matches are distributed among these distances:
20 15 0.19
22 2 0.03
23 1 0.01
25 3 0.04
27 57 0.73
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (27 bp):
ACATAAGGGTAAAACAGTCATTTTACT
Found at i:49819401 original size:20 final size:20
Alignment explanation
Indices: 49819376--49819417 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
49819366 TTTTACTACA
49819376 TAAGGGTAAAACAGTCATTT
1 TAAGGGTAAAACAGTCATTT
* *
49819396 TAAGGGTAAAATAGTTATTT
1 TAAGGGTAAAACAGTCATTT
49819416 TA
1 TA
49819418 CCTCATAAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.19, T:0.36
Consensus pattern (20 bp):
TAAGGGTAAAACAGTCATTT
Found at i:49819425 original size:47 final size:47
Alignment explanation
Indices: 49819350--49819444 Score: 138
Period size: 47 Copynumber: 2.0 Consensus size: 47
49819340 CTTACCATAA
*
49819350 AAGGGCAAAACAGTCATTTTACTACATAAGGGTAAAACAGTCATTTT
1 AAGGGCAAAACAGTCATTTTACTACATAAGGGCAAAACAGTCATTTT
* * *
49819397 AAGGGTAAAATAGTTATTTTACCT-CATAAGGGCAAAACAGTCATTTT
1 AAGGGCAAAACAGTCATTTTA-CTACATAAGGGCAAAACAGTCATTTT
49819444 A
1 A
49819445 TTAACTTAGG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
47 41 0.95
48 2 0.05
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (47 bp):
AAGGGCAAAACAGTCATTTTACTACATAAGGGCAAAACAGTCATTTT
Found at i:49820884 original size:12 final size:12
Alignment explanation
Indices: 49820867--49820891 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
49820857 TCGCCTAAAA
49820867 CCCTCCTCAAAT
1 CCCTCCTCAAAT
49820879 CCCTCCTCAAAT
1 CCCTCCTCAAAT
49820891 C
1 C
49820892 TCTCAACTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.52, G:0.00, T:0.24
Consensus pattern (12 bp):
CCCTCCTCAAAT
Found at i:49832186 original size:46 final size:44
Alignment explanation
Indices: 49832125--49832308 Score: 190
Period size: 46 Copynumber: 4.0 Consensus size: 44
49832115 TGTCACTAGG
* *
49832125 ATGGTTGAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
1 ATGGATGAGAATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
* *
49832169 ATGGATGAGAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAA
1 ATGGATGAGAA--TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--T
* * *
49832216 ATGTAACTGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
1 ATG-GA-TGAGAATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
* * * *
49832262 ATGGATGCGAACACCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTT
1 ATGGATGAG-A-ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
49832308 A
1 A
49832309 GGGGCGGGTT
Statistics
Matches: 116, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
44 12 0.10
45 2 0.02
46 64 0.55
47 32 0.28
48 2 0.02
49 4 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (44 bp):
ATGGATGAGAATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
Found at i:49832292 original size:93 final size:93
Alignment explanation
Indices: 49832133--49832303 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
49832123 GGATGGTTGA
***
49832133 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACACCCGAACTCGTTGAGT
49832198 TGAGTCCGAGTTCGTGAAATGTAACTGG
66 TGAGTCCGAGTTCGTGAAATGTAACTGG
* * *
49832226 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACACCCGAACTCGTTGAGT
49832291 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
49832304 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTGG
Found at i:49834812 original size:27 final size:28
Alignment explanation
Indices: 49834781--49834846 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
49834771 TGGCATATTT
49834781 GTCATTTTACCATAC-AGGGGTATTACG
1 GTCATTTTACCATACAAGGGGTATTACG
*
49834808 GTCATTTTACCCTACAAGGGGTATTACG
1 GTCATTTTACCATACAAGGGGTATTACG
*
49834836 ATCATTTTACC
1 GTCATTTTACC
49834847 TATTTTGGGG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 14 0.39
28 22 0.61
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (28 bp):
GTCATTTTACCATACAAGGGGTATTACG
Found at i:49840328 original size:56 final size:56
Alignment explanation
Indices: 49840237--49840344 Score: 157
Period size: 56 Copynumber: 1.9 Consensus size: 56
49840227 TCTTACATGT
* **
49840237 AATCACATATTGATGCCACTGTCCTAGACAGGGTCTTACTCGCACACATATAGCAG
1 AATCACATATTGATGCCAATGTAATAGACAGGGTCTTACTCGCACACATATAGCAG
49840293 AATCACATATTGATGCCAATGTAATA-A-ATGCGGTCTTACTCGCACACATATA
1 AATCACATATTGATGCCAATGTAATAGACA-G-GGTCTTACTCGCACACATATA
49840345 TCGATGCCAT
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
54 1 0.02
55 2 0.04
56 44 0.94
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (56 bp):
AATCACATATTGATGCCAATGTAATAGACAGGGTCTTACTCGCACACATATAGCAG
Found at i:49842536 original size:27 final size:27
Alignment explanation
Indices: 49842478--49842538 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
49842468 CATACATCTC
* *
49842478 ATAGGGGCATATCAGTCATTTTACCAT
1 ATAGGGGCATATCAGTCATTTCACAAT
*
49842505 ATAGGGGCATTTCAGTCATTTCATCAAT
1 ATAGGGGCATATCAGTCATTTCA-CAAT
49842533 -TAGGGG
1 ATAGGGG
49842539 GTCTAGATGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 27 0.90
28 3 0.10
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (27 bp):
ATAGGGGCATATCAGTCATTTCACAAT
Found at i:49846865 original size:46 final size:46
Alignment explanation
Indices: 49846706--49846865 Score: 141
Period size: 46 Copynumber: 3.5 Consensus size: 46
49846696 GCGAACTAAA
* * * * *
49846706 ACTCAACTCAACAAGCTCGGGCGTTCGCATCTATAAGTGAACTCAG
1 ACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGG
* * * *
49846752 ACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTCA-CA---AACTTGG
1 ACTCAACTCAACGAGCTCGGA---C-A-TTCGCATC-CATAAGTGAACTCGG
49846799 ACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGG
1 ACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGG
*
49846845 ACTCAACTCAACGAGTTCGGA
1 ACTCAACTCAACGAGCTCGGA
49846866 TGCCCAAATA
Statistics
Matches: 89, Mismatches: 14, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
42 4 0.04
43 6 0.07
44 1 0.01
46 44 0.49
47 25 0.28
49 1 0.01
50 5 0.06
51 3 0.03
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
ACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGG
Found at i:49862314 original size:23 final size:21
Alignment explanation
Indices: 49862281--49862326 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
49862271 TCATGCTTAT
*
49862281 AATCATATCAAAATCATGCCA
1 AATCATATCAAAATCATACCA
*
49862302 AATCATAATTCAAAGTCATACCA
1 AATCAT-A-TCAAAATCATACCA
49862325 AA
1 AA
49862327 ACGTAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 1 0.05
23 14 0.67
ACGTcount: A:0.50, C:0.22, G:0.04, T:0.24
Consensus pattern (21 bp):
AATCATATCAAAATCATACCA
Found at i:49863111 original size:43 final size:42
Alignment explanation
Indices: 49863042--49863177 Score: 105
Period size: 43 Copynumber: 3.2 Consensus size: 42
49863032 AAGCTCGTCA
* * *
49863042 ATGCCAATGTCCCAGACGTGGCCTTACATGTAATTAAATATCG
1 ATGCCAATGTCCCAGACGTGGCCTTACACGAAATCAAATA-CG
* * *
49863085 ATGCCACTGTCTCAGACAG-GGTCTTACACGAAATCAAATACG
1 ATGCCAATGTCCCAGAC-GTGGCCTTACACGAAATCAAATACG
*** * * *
49863127 ATGTTGATGTCCCATACATGGTCTTACACGTAAATCAGAAGT-CG
1 ATGCCAATGTCCCAGACGTGGCCTTACACG-AAATCA-AA-TACG
49863171 ATGCCAA
1 ATGCCAA
49863178 CATCCCAAAT
Statistics
Matches: 72, Mismatches: 16, Indels: 9
0.74 0.16 0.09
Matches are distributed among these distances:
42 24 0.33
43 38 0.53
44 9 0.12
45 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGCCTTACACGAAATCAAATACG
Found at i:49873507 original size:23 final size:21
Alignment explanation
Indices: 49873474--49873519 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
49873464 TCATGCTTAT
*
49873474 AATCATATCAAAATCATGCCA
1 AATCATATCAAAATCATACCA
*
49873495 AATCATAATTCAAAGTCATACCA
1 AATCAT-A-TCAAAATCATACCA
49873518 AA
1 AA
49873520 ACTTAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 1 0.05
23 14 0.67
ACGTcount: A:0.50, C:0.22, G:0.04, T:0.24
Consensus pattern (21 bp):
AATCATATCAAAATCATACCA
Found at i:49875212 original size:19 final size:19
Alignment explanation
Indices: 49875188--49875227 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
49875178 TGTAAAGAAA
*
49875188 TATATATGTGACTATGGTT
1 TATATATGTGACTATAGTT
49875207 TATATATGTGACTATAGTT
1 TATATATGTGACTATAGTT
49875226 TA
1 TA
49875228 AGTACAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.30, C:0.05, G:0.17, T:0.47
Consensus pattern (19 bp):
TATATATGTGACTATAGTT
Found at i:49875320 original size:40 final size:41
Alignment explanation
Indices: 49875276--49875364 Score: 112
Period size: 40 Copynumber: 2.2 Consensus size: 41
49875266 GCATTTCAAA
* *
49875276 ATAGCTTCAGCTATAAAT-A-GCACTAAGTGTGTGA-ATTGAG
1 ATAGCTTCAGCTAT--ATGAGGCACTAAGTGTGCGATACTGAG
*
49875316 ATAGCTTCGGCTATATGAGGCACTAAGTGTGCGATACTGAG
1 ATAGCTTCAGCTATATGAGGCACTAAGTGTGCGATACTGAG
49875357 ATAGCTTC
1 ATAGCTTC
49875365 GGTTTATTGA
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
38 2 0.05
39 1 0.02
40 27 0.63
41 13 0.30
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (41 bp):
ATAGCTTCAGCTATATGAGGCACTAAGTGTGCGATACTGAG
Found at i:49875391 original size:44 final size:40
Alignment explanation
Indices: 49875295--49875393 Score: 119
Period size: 40 Copynumber: 2.4 Consensus size: 40
49875285 GCTATAAATA
* *
49875295 GCACTAAGTGTGTGAATTGAGATAGCTTCGGCTATATGAG
1 GCACTAAGTGTGCGAACTGAGATAGCTTCGGCTATATGAG
*
49875335 GCACTAAGTGTGCGATACTGAGATAGCTTCGG-TTTATTGAGATG
1 GCACTAAGTGTGCGA-ACTGAGATAGCTTCGGCTATA-T--GA-G
49875379 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
49875394 GATCGATTTG
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
40 17 0.33
41 16 0.31
43 2 0.04
44 16 0.31
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.29
Consensus pattern (40 bp):
GCACTAAGTGTGCGAACTGAGATAGCTTCGGCTATATGAG
Found at i:49882814 original size:39 final size:39
Alignment explanation
Indices: 49882760--49882837 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
49882750 TACCTCGATA
49882760 CAAAATAGTAGGAAATGGACCTAATCGTCAATAACCTTG
1 CAAAATAGTAGGAAATGGACCTAATCGTCAATAACCTTG
49882799 CAAAATAGTAGGAAATGGACCTAATCGTCAATAACCTTG
1 CAAAATAGTAGGAAATGGACCTAATCGTCAATAACCTTG
49882838 TTTTTCCCCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (39 bp):
CAAAATAGTAGGAAATGGACCTAATCGTCAATAACCTTG
Found at i:49899765 original size:39 final size:39
Alignment explanation
Indices: 49899721--49899805 Score: 100
Period size: 40 Copynumber: 2.2 Consensus size: 39
49899711 CCTTCGGAGT
*
49899721 TTAGCCAGATATAGCCACTAG-ATCAAATGCCTTCGGGAC
1 TTAGCCAGATATAGCAACTAGCA-CAAATGCCTTCGGGAC
* * * *
49899760 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAG-CCAGATATAGCAACTAGCACAAATGCCTTCGGGAC
49899800 TTAGCC
1 TTAGCC
49899806 CGGTATAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
39 6 0.15
40 32 0.82
41 1 0.03
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (39 bp):
TTAGCCAGATATAGCAACTAGCACAAATGCCTTCGGGAC
Found at i:49899788 original size:40 final size:39
Alignment explanation
Indices: 49899744--49899824 Score: 135
Period size: 40 Copynumber: 2.1 Consensus size: 39
49899734 GCCACTAGAT
* *
49899744 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
49899784 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
49899823 CA
1 CA
49899825 GTAGCTCGCA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 14 0.36
40 25 0.64
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
Found at i:49906904 original size:40 final size:39
Alignment explanation
Indices: 49906860--49907044 Score: 237
Period size: 40 Copynumber: 4.7 Consensus size: 39
49906850 GCCACTAGCT
* *
49906860 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
49906900 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
*
49906939 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
49906979 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
49907019 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
49907045 TATCATCCGA
Statistics
Matches: 128, Mismatches: 14, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
39 40 0.31
40 88 0.69
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:49906960 original size:79 final size:80
Alignment explanation
Indices: 49906853--49907047 Score: 259
Period size: 79 Copynumber: 2.5 Consensus size: 80
49906843 GGATATAGCC
* * *
49906853 ACTAGCTCAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTT
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
* *
49906918 AGCCCGGTA-TAATA
66 AGCCCGGAATTAACA
* * * *
49906932 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGACTT
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
* *
49906997 AGCCCGGAATTAGCC
66 AGCCCGGAATTAACA
*
49907012 ACTAGCTCAAATG-CTCTCGGGACTTAGCCCGGTTAT
1 ACTAGCACAAATGCCT-TCGGGACTTAGCCCGGTTAT
49907048 CATCCGAACA
Statistics
Matches: 100, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 68 0.68
80 32 0.32
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCGGAATTAACA
Found at i:49915189 original size:27 final size:27
Alignment explanation
Indices: 49915084--49915191 Score: 121
Period size: 27 Copynumber: 4.0 Consensus size: 27
49915074 AGCATGACTG
* * * *
49915084 CCAGAATAGATAA-CGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
49915110 CCAGAACAGATAATTGTGGCAGAACCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
49915137 CCAGAACAGAT-ATATGGGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
49915164 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
49915191 C
1 C
49915192 AGGACGCTTC
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 14 0.20
27 53 0.77
28 2 0.03
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:49916638 original size:24 final size:24
Alignment explanation
Indices: 49916600--49916700 Score: 123
Period size: 24 Copynumber: 4.2 Consensus size: 24
49916590 CCAACACTGT
* *
49916600 TCTCCCTAATTAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
49916624 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* * * *
49916648 TATCCCTTATCAACTCATAAGTCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
49916672 TATCCCTTATC-GACTCCTAAATCC
1 TCTCCCTTATCAG-CTCCTAAATCC
49916696 TCTCC
1 TCTCC
49916701 TGACAGACTT
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
24 66 1.00
ACGTcount: A:0.24, C:0.39, G:0.04, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:49923020 original size:27 final size:27
Alignment explanation
Indices: 49922968--49923049 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
49922958 CATGGCTGCA
* *
49922968 AGAACAGATAA-TGTGACAGAGTCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
49922994 AGAACAGATAATTGTGGCAGAGCCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
*
49923021 A-AATCAGATAATTGTGGCATAGCCACC
1 AGAA-CAGATAATTGTGGCAGAGCCACC
49923048 AG
1 AG
49923050 TGTGACAGCC
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
26 13 0.26
27 37 0.74
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (27 bp):
AGAACAGATAATTGTGGCAGAGCCACC
Found at i:49925025 original size:47 final size:47
Alignment explanation
Indices: 49924973--49925569 Score: 899
Period size: 47 Copynumber: 12.6 Consensus size: 47
49924963 GATAATTGTG
* * *
49924973 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49925020 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49925067 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49925116 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49925163 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49925212 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
49925259 ATGTGAAAGTGTATATATGTGATAAGGCCGAA-GGCCAATCTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49925305 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
49925354 ATGTGAAAGTGTATATATATGTGATAAGGTCTAATGGCCTATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
49925403 ATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
49925450 ATGCGAAAGTGTATATATGTGATGAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
49925497 ATGTGAAAATGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49925544 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
49925570 TCCCGAAGGG
Statistics
Matches: 504, Mismatches: 39, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
46 23 0.05
47 300 0.60
48 20 0.04
49 161 0.32
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:49925080 original size:96 final size:96
Alignment explanation
Indices: 49924973--49925569 Score: 924
Period size: 96 Copynumber: 6.3 Consensus size: 96
49924963 GATAATTGTG
*
49924973 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
49925036 ATGTGATAAGGCCGAATGGCCGATGTGATGA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGA
49925067 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
49925132 ATGTGATAAGGCCGAATGGCCGATGTGATGA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGA
49925163 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
49925228 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGA
* * *
49925259 ATGTGAAAGTG--TATATATGTGATAAGGCCGAA-GGCCAATCTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
49925321 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCGAATGGCCGATGTGATGA
* * *
49925354 ATGTGAAAGTGTATATATATGTGATAAGGTCTAATGGCCTATGTGATGAATGTGAAAGTATATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
49925419 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGA
* * * *
49925450 ATGCGAAAGTG--TATATATGTGATGAGGCTTAATGGCCGATGTGATGAATGTGAAAATGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * *
49925513 ATGTGACAGGGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAGGCCGAATGGCCGATGTGATGA
49925544 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
49925570 TCCCGAAGGG
Statistics
Matches: 466, Mismatches: 28, Indels: 18
0.91 0.05 0.04
Matches are distributed among these distances:
93 23 0.05
94 113 0.24
95 50 0.11
96 239 0.51
97 19 0.04
98 22 0.05
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCGAATGGCCGATGTGATGA
Found at i:49927855 original size:40 final size:39
Alignment explanation
Indices: 49927798--49927925 Score: 220
Period size: 40 Copynumber: 3.2 Consensus size: 39
49927788 CGACGATGAT
49927798 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
49927837 CCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 CC-GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
49927877 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 -CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
49927917 CCCGGGCTA
1 -CCGGGCTA
49927926 TGTGACACCC
Statistics
Matches: 84, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
39 2 0.02
40 80 0.95
41 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:49931228 original size:47 final size:47
Alignment explanation
Indices: 49931146--49931485 Score: 446
Period size: 47 Copynumber: 7.4 Consensus size: 47
49931136 TAATTGAATA
* *
49931146 AATGTGAA-AGTGTATATGTGTGAATAAAGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTGTATGTGTG-ATAAGGCCGAATGGCCAATGTGATG
** * *
49931194 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
49931241 AATGTGAACATGTGTATGTGTGATATTGGCC--AT--TC-A-GTGATG
1 AATGTGAACATGTGTATGTGTGATA-AGGCCGAATGGCCAATGTGATG
*
49931283 AAAGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
*
49931330 AAAGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
49931377 AAAGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
49931424 AATGTGAGCATGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
49931471 AATGTGAA-A-GTGTAT
1 AATGTGAACATGTGTAT
49931486 AAATGTGATA
Statistics
Matches: 263, Mismatches: 21, Indels: 19
0.87 0.07 0.06
Matches are distributed among these distances:
41 4 0.02
42 30 0.11
43 3 0.01
44 1 0.00
45 7 0.03
46 4 0.02
47 192 0.73
48 21 0.08
49 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:49931305 original size:25 final size:25
Alignment explanation
Indices: 49931277--49931353 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
49931267 TGGCCATTCA
49931277 GTGATGAAAGTGAACATGTGTATGT
1 GTGATGAAAGTGAACATGTGTATGT
* * * *
49931302 GTGAT-AAGGCCG-A-ATG-GCCA-AT
1 GTGATGAAAG-TGAACATGTG-TATGT
49931324 GTGATGAAAGTGAACATGTGTATGT
1 GTGATGAAAGTGAACATGTGTATGT
49931349 GTGAT
1 GTGAT
49931354 AAGGCCGAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 8 0.22
23 8 0.22
24 8 0.22
25 13 0.35
ACGTcount: A:0.31, C:0.08, G:0.32, T:0.29
Consensus pattern (25 bp):
GTGATGAAAGTGAACATGTGTATGT
Found at i:49931326 original size:24 final size:24
Alignment explanation
Indices: 49931298--49931420 Score: 68
Period size: 24 Copynumber: 5.2 Consensus size: 24
49931288 GAACATGTGT
49931298 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* *
49931322 ATGTGATGA-AAGTG--AACATGTG--T
1 ATGTG-TGATAAG-GCCGA-ATG-GCCA
49931345 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* *
49931369 ATGTGATGA-AAGTG--AACAT-G-TA
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
49931391 TATGTGTGATAAGGCCGAATGGCCA
1 -ATGTGTGATAAGGCCGAATGGCCA
49931416 ATGTG
1 ATGTG
49931421 ATGAATGTGA
Statistics
Matches: 73, Mismatches: 8, Indels: 36
0.62 0.07 0.31
Matches are distributed among these distances:
22 10 0.14
23 24 0.33
24 29 0.40
25 10 0.14
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:49931672 original size:37 final size:37
Alignment explanation
Indices: 49931616--49931695 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 37
49931606 CCGGGCTCTA
* * *
49931616 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
49931653 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
*
49931690 GAGACT
1 AAGACT
49931696 TCGTAATAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:49933548 original size:40 final size:39
Alignment explanation
Indices: 49933491--49933993 Score: 697
Period size: 40 Copynumber: 12.6 Consensus size: 39
49933481 TCGAATGATG
* *
49933491 TCCGGGCTAAGTCCCGAAG-GC-TTGGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * * *
49933531 TCCGGACTAAGATCCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTGA-TATA
* *
49933571 TCCGGGCTAAGTCCTGAAGGGCATTCGTGCTAATGATATA
1 TCCGGGCTAAGTCC-GAAGAGCATTCGTGCTAGTGATATA
49933611 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATATA
49933651 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATATA
*
49933691 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATATA
*
49933731 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTGATATA
49933771 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTGATATA
*
49933811 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATATA
*
49933851 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTGATATA
*
49933891 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTGATATA
49933931 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTGATATA
* *
49933971 TCCGTGCTAAATCCCGAAGAGCA
1 TCCGGGCTAAGT-CCGAAGAGCA
49933994 ATCATGCTGG
Statistics
Matches: 435, Mismatches: 19, Indels: 18
0.92 0.04 0.04
Matches are distributed among these distances:
39 5 0.01
40 406 0.93
41 24 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:49938387 original size:47 final size:47
Alignment explanation
Indices: 49938305--49938649 Score: 525
Period size: 47 Copynumber: 7.4 Consensus size: 47
49938295 TAATTGAATA
* *
49938305 AATGTGAA-AGTGTATATGTGTGAATAAAGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTGTATGTGTG-ATAAGGCCGAATGGCCAATGTGATG
** * *
49938353 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
49938400 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
*
49938447 AAAGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
*
49938494 AAAGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
49938541 AAAGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
49938588 AATGTGAGCATGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
49938635 AATGTGAA-A-GTGTAT
1 AATGTGAACATGTGTAT
49938650 AAATGTGATA
Statistics
Matches: 279, Mismatches: 17, Indels: 5
0.93 0.06 0.02
Matches are distributed among these distances:
45 6 0.02
46 1 0.00
47 254 0.91
48 17 0.06
49 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.26
Consensus pattern (47 bp):
AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:49938836 original size:37 final size:37
Alignment explanation
Indices: 49938780--49938859 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 37
49938770 CCGGGCTCTA
* * *
49938780 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
49938817 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
*
49938854 GAGACT
1 AAGACT
49938860 TCGTAATAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:49940251 original size:40 final size:40
Alignment explanation
Indices: 49940196--49940427 Score: 286
Period size: 40 Copynumber: 5.8 Consensus size: 40
49940186 GGGTGTTACA
*
49940196 GGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCG
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
* *
49940236 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCA
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
*
49940276 GACTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
* * * * *
49940316 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATATATCCA
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
* * * * * *
49940356 TGCTAA-ACCTCGAAGAGCATTCGTGCTGGTGTTATATCCG
1 GGCTAAGTCC-CGAAGAGCATTCATGCTAGTGATGTATCCG
* * *
49940396 GGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
49940428 CGTGTATTCG
Statistics
Matches: 165, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 1 0.01
40 162 0.98
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
Found at i:49940409 original size:120 final size:120
Alignment explanation
Indices: 49940196--49940427 Score: 322
Period size: 120 Copynumber: 1.9 Consensus size: 120
49940186 GGGTGTTACA
* * * *
49940196 GGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTG
1 GGCTAAGTTCCGAAGAGCATTCATGCTAGTAATATATCCAGGCTAAGACCCGAAGAGCATTCGTG
* *
49940261 CTAGTGATGTATCCAGACTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
66 CTAGTGATATATCCAGACTAAGTCCCGAAGAGCAATCATGCTAGTGATGTATCCG
* *
49940316 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATATATCCATGCTAA-ACCTCGAAGAGCATTCGT
1 GGCTAAGTTCCGAAGAGCATTCATGCTAGTAATATATCCAGGCTAAGACC-CGAAGAGCATTCGT
* * * * * *
49940380 GCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
65 GCTAGTGATATATCCAGACTAAGTCCCGAAGAGCAATCATGCTAGTGA
49940428 CGTGTATTCG
Statistics
Matches: 97, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
119 2 0.02
120 95 0.98
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (120 bp):
GGCTAAGTTCCGAAGAGCATTCATGCTAGTAATATATCCAGGCTAAGACCCGAAGAGCATTCGTG
CTAGTGATATATCCAGACTAAGTCCCGAAGAGCAATCATGCTAGTGATGTATCCG
Found at i:49943860 original size:47 final size:47
Alignment explanation
Indices: 49943750--49944249 Score: 734
Period size: 47 Copynumber: 10.6 Consensus size: 47
49943740 GATAATTGTG
* * * *
49943750 ATGTGAATGTATATATATGTGATAAGGCCTAATGGTCGGTG-GATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49943796 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49943843 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49943892 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
49943939 ATGTGAAAGTGT-TATATGTGATAAGGCCGAATGGCCAATCTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49943985 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
49944034 ATGTGAAAGTGTATATATATGTGATAAGGTCTAATGGCCTATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
49944083 ATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49944130 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
49944177 ATGTGAAAATGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49944224 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
49944250 TCCCGAAGGG
Statistics
Matches: 414, Mismatches: 34, Indels: 11
0.90 0.07 0.02
Matches are distributed among these distances:
46 78 0.19
47 201 0.49
48 1 0.00
49 134 0.32
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:49944038 original size:191 final size:189
Alignment explanation
Indices: 49943750--49944249 Score: 763
Period size: 191 Copynumber: 2.6 Consensus size: 189
49943740 GATAATTGTG
* * * * *
49943750 ATGTGAATGTATATATATGTGATAAGGCCTAATGGTCGGTGGATGAATGTGAAAGTGTATATATG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATTGATGAATGTGAAAGTGTATATATG
49943815 TGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
66 TGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
* *
49943880 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
131 CCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
* *
49943939 ATGTGAAAGTGT-TATATGTGATAAGGCCGAATGGCCAATCTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT-TGATGAATGTGAAAGTG--TATAT
* *
49944003 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGTCTAA
63 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
*
49944068 TGGCCTATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
128 TGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
* *
49944130 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT-TGATGAATGTGAAAGTGTATATAT
* * * * * *
49944195 GTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
65 GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
49944250 TCCCGAAGGG
Statistics
Matches: 283, Mismatches: 24, Indels: 9
0.90 0.08 0.03
Matches are distributed among these distances:
188 33 0.12
189 27 0.10
190 44 0.16
191 139 0.49
192 40 0.14
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (189 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATTGATGAATGTGAAAGTGTATATATG
TGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
Found at i:49945623 original size:8 final size:8
Alignment explanation
Indices: 49945607--49945638 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
49945597 CTTAAAATGC
49945607 CGGCTTTT
1 CGGCTTTT
*
49945615 CGGCATTT
1 CGGCTTTT
49945623 CGGCTTTT
1 CGGCTTTT
49945631 CGGCTTTT
1 CGGCTTTT
49945639 GCCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:49946633 original size:24 final size:24
Alignment explanation
Indices: 49946601--49946701 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 24
49946591 CCAACATTGT
*
49946601 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
* * *
49946625 TCTCTCTTATTAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
49946649 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
49946673 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
49946697 TCTCC
1 TCTCC
49946702 TGACAGACTT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 70 1.00
ACGTcount: A:0.24, C:0.39, G:0.02, T:0.36
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:49947335 original size:29 final size:27
Alignment explanation
Indices: 49947235--49947353 Score: 150
Period size: 27 Copynumber: 4.4 Consensus size: 27
49947225 ATATATACAT
* * *
49947235 CACAT-AGGGCAAAGCATTCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
49947261 CATATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
49947288 CATATAAAGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
49947315 CACATAAGGGCAAAACACAGTCATTTTAC
1 CACATAAGGGC-AAA-ACAGTCATTTTAC
49947344 CACATAAGGG
1 CACATAAGGG
49947354 TCCAAGCACA
Statistics
Matches: 81, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
26 4 0.05
27 51 0.63
28 3 0.04
29 23 0.28
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.24
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:49956978 original size:26 final size:27
Alignment explanation
Indices: 49956860--49957036 Score: 216
Period size: 27 Copynumber: 6.6 Consensus size: 27
49956850 GCGTACCTGA
* *
49956860 ACCCTCATGTGAAAAAATGACGATATT
1 ACCCTCATGTGATAAAATGACGATTTT
* *
49956887 GCCCTTATGTGATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
49956914 ATCCCT-ATGTGATAAAATGACGATTTT
1 A-CCCTCATGTGATAAAATGACGATTTT
* *
49956941 GCCCTCATGTGATAAAATGATGA-TTT
1 ACCCTCATGTGATAAAATGACGATTTT
*
49956967 ACCCTCATGTGATAAAATGATGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
** *
49956994 ACCCTTTTGTGAT-AAATGATGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
* *
49957020 ACCCTTATGGGATAAAA
1 ACCCTCATGTGATAAAA
49957037 CGACCGAAAT
Statistics
Matches: 134, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
26 53 0.40
27 77 0.57
28 4 0.03
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.35
Consensus pattern (27 bp):
ACCCTCATGTGATAAAATGACGATTTT
Found at i:49957005 original size:53 final size:54
Alignment explanation
Indices: 49956860--49957036 Score: 243
Period size: 53 Copynumber: 3.3 Consensus size: 54
49956850 GCGTACCTGA
* * *
49956860 ACCCTCATGTGAAAAAATGACGATATTGCCCTTATGTGATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTTGCCCTTATGTGATAAAATGATGATTTT
*
49956914 ATCCCT-ATGTGATAAAATGACGATTTTGCCCTCATGTGATAAAATGATGA-TTT
1 A-CCCTCATGTGATAAAATGACGATTTTGCCCTTATGTGATAAAATGATGATTTT
* * *
49956967 ACCCTCATGTGATAAAATGATGATTTTACCCTTTTGTGAT-AAATGATGATTTT
1 ACCCTCATGTGATAAAATGACGATTTTGCCCTTATGTGATAAAATGATGATTTT
* *
49957020 ACCCTTATGGGATAAAA
1 ACCCTCATGTGATAAAA
49957037 CGACCGAAAT
Statistics
Matches: 110, Mismatches: 10, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
52 13 0.12
53 52 0.47
54 41 0.37
55 4 0.04
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.35
Consensus pattern (54 bp):
ACCCTCATGTGATAAAATGACGATTTTGCCCTTATGTGATAAAATGATGATTTT
Found at i:49957079 original size:27 final size:27
Alignment explanation
Indices: 49957039--49957106 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 27
49957029 GGATAAAACG
** * * *
49957039 ACCGAAATGTCCTCATATGGTAGGATA
1 ACCGAAATACCCTCATAGGGCAGAATA
* *
49957066 ACCGAAATACCCTCGTAGGGCAGAATG
1 ACCGAAATACCCTCATAGGGCAGAATA
49957093 ACCGAAATATCCCT
1 ACCGAAATA-CCCT
49957107 GTAGGGTAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
27 29 0.88
28 4 0.12
ACGTcount: A:0.34, C:0.25, G:0.21, T:0.21
Consensus pattern (27 bp):
ACCGAAATACCCTCATAGGGCAGAATA
Found at i:49957110 original size:27 final size:27
Alignment explanation
Indices: 49957066--49957132 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
49957056 TGGTAGGATA
*
49957066 ACCGAAATACCCTCGTAGGGCAGAATG
1 ACCGAAATACCCTCGTAGGGCAAAATG
*
49957093 ACCGAAATATCCCT-GTAGGGTAAAATG
1 ACCGAAATA-CCCTCGTAGGGCAAAATG
* *
49957120 ACTGTAATACCCT
1 ACCGAAATACCCT
49957133 ATAAGGTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.11
27 27 0.77
28 4 0.11
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (27 bp):
ACCGAAATACCCTCGTAGGGCAAAATG
Found at i:49957461 original size:22 final size:23
Alignment explanation
Indices: 49957436--49957479 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
49957426 TTATCCCCAC
*
49957436 ATGGAGTGTAG-GGCTGGATGGA
1 ATGGAGTGTAGAGGATGGATGGA
49957458 ATGGAGTGTAGAGGATGGATGG
1 ATGGAGTGTAGAGGATGGATGG
49957480 GTAGGATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.25, C:0.02, G:0.50, T:0.23
Consensus pattern (23 bp):
ATGGAGTGTAGAGGATGGATGGA
Found at i:49959916 original size:8 final size:8
Alignment explanation
Indices: 49959903--49959928 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
49959893 AAAGCTCCTA
49959903 ACCACTTT
1 ACCACTTT
49959911 ACCACTTT
1 ACCACTTT
49959919 ACCACTTT
1 ACCACTTT
49959927 AC
1 AC
49959929 TCATTGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.38, G:0.00, T:0.35
Consensus pattern (8 bp):
ACCACTTT
Found at i:49962307 original size:12 final size:12
Alignment explanation
Indices: 49962290--49962317 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
49962280 CGATCCAAGC
49962290 TTTAAAGGAAAT
1 TTTAAAGGAAAT
49962302 TTTAAAGGAAAT
1 TTTAAAGGAAAT
49962314 TTTA
1 TTTA
49962318 CTTCCTCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.14, T:0.39
Consensus pattern (12 bp):
TTTAAAGGAAAT
Found at i:49967267 original size:37 final size:37
Alignment explanation
Indices: 49967217--49967295 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
49967207 TTATTACGAA
* *
49967217 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
49967254 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
49967291 GTCTT
1 GTCTT
49967296 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:49967492 original size:47 final size:47
Alignment explanation
Indices: 49967414--49967808 Score: 655
Period size: 47 Copynumber: 8.4 Consensus size: 47
49967404 CCCTTCGGGA
* * * * * *
49967414 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
49967461 CCTGTCACAGATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49967508 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49967555 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49967602 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49967649 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49967696 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49967743 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49967790 CTTATCACATATATACACT
1 CTTATCACATATATACACT
49967809 GTCTTGGCTG
Statistics
Matches: 328, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 328 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49974018 original size:55 final size:54
Alignment explanation
Indices: 49973889--49974091 Score: 237
Period size: 55 Copynumber: 3.8 Consensus size: 54
49973879 ATTAGGGTTT
* * *
49973889 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * * * * *
49973943 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGAGAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTG-GTAAGTTCTATAAGGC
* * * * *
49973998 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * *
49974051 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTA
49974092 GGTTTAAAAA
Statistics
Matches: 122, Mismatches: 26, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
53 42 0.34
54 37 0.30
55 43 0.35
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
Found at i:49984221 original size:34 final size:34
Alignment explanation
Indices: 49984178--49984248 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
49984168 AGCATAACTT
49984178 AGTCACTTTCCTTCCTTACTAAACATACAACGTA
1 AGTCACTTTCCTTCCTTACTAAACATACAACGTA
49984212 AGTCACTTTCCTTCCTTACTAAACATACAACGTA
1 AGTCACTTTCCTTCCTTACTAAACATACAACGTA
49984246 AGT
1 AGT
49984249 AAAGCTCGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.32
Consensus pattern (34 bp):
AGTCACTTTCCTTCCTTACTAAACATACAACGTA
Found at i:49984744 original size:48 final size:48
Alignment explanation
Indices: 49984594--49984756 Score: 168
Period size: 48 Copynumber: 3.4 Consensus size: 48
49984584 AAGCTGACAC
** * * ** *
49984594 CATGTCCCAGACAGGTCTTACAGTAGCTTGTATAAGTCGGGGCCGATG
1 CATGTCCCAGACATATCTTACACTAGCTTGTACATCTCGAGGCCGATG
* * * * *
49984642 AATGTCCCAGACATATCTTACACTAGC-TCT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATATCTTACACTAGCTTGTACATCTCGAGGCCGATG
* * * *
49984688 CATTTCCCACACATGTCTTACACTGGCTTGTACATCTCGAGGCCGATG
1 CATGTCCCAGACATATCTTACACTAGCTTGTACATCTCGAGGCCGATG
49984736 CATGTCCCAGACATATCTTAC
1 CATGTCCCAGACATATCTTAC
49984757 TTTAGCACAC
Statistics
Matches: 89, Mismatches: 24, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
46 31 0.35
47 4 0.04
48 54 0.61
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATATCTTACACTAGCTTGTACATCTCGAGGCCGATG
Found at i:49999963 original size:27 final size:27
Alignment explanation
Indices: 49999933--50000024 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
49999923 TTTACCAAAG
* * * *
49999933 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
49999960 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
49999987 TACCCTC-AGTTTACAAAATTACCATTT
1 TACCCTCGA-TTTACAAAATTACCATTT
50000014 TACCCTCGATT
1 TACCCTCGATT
50000025 GTGAAATTAC
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
26 1 0.02
27 57 0.97
28 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:50000117 original size:27 final size:26
Alignment explanation
Indices: 50000086--50000255 Score: 110
Period size: 27 Copynumber: 6.3 Consensus size: 26
50000076 TTTGTAACTA
*
50000086 GTTTGTAAAATTACCGAAATACCACTG
1 GTTTGTAAAATTACAGAAATACC-CTG
* * *
50000113 GTTTGTGAAATTACATAAAT-CCCTCA
1 GTTTGTAAAATTACAGAAATACCCT-G
*
50000139 ATTTGTAAAATTACCA-AAATACCCCTG
1 GTTTGTAAAATTA-CAGAAATA-CCCTG
* **
50000166 ATTTACAAAATTACAGAAATACCCTTG
1 GTTTGTAAAATTACAGAAATACCC-TG
* * * *
50000193 ACTTTCTAAAAATTATAGAAATACCATTG
1 -GTTTGT-AAAATTACAGAAATACC-CTG
** *
50000222 GTTTACAAAATTACTGAAATACCCTTG
1 GTTTGTAAAATTACAGAAATACCC-TG
50000249 GTTTGTA
1 GTTTGTA
50000256 GATTTACCAA
Statistics
Matches: 111, Mismatches: 22, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
25 2 0.02
26 22 0.20
27 59 0.53
28 10 0.09
29 18 0.16
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.33
Consensus pattern (26 bp):
GTTTGTAAAATTACAGAAATACCCTG
Found at i:50000177 original size:53 final size:54
Alignment explanation
Indices: 50000087--50000246 Score: 153
Period size: 53 Copynumber: 2.9 Consensus size: 54
50000077 TTGTAACTAG
* * *** *
50000087 TTTGTAAAATTACCGAAATACCACTGGTTTGTGAAATTACATAAAT-CCCTCAA
1 TTTGTAAAATTACCAAAATACCACTGATTTACAAAATTACAGAAATACCCTCAA
* * *
50000140 TTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTGAC
1 TTTGTAAAATTACCAAAATACCACTGATTTACAAAATTACAGAAATACCC-TCAA
* * * * *
50000195 TTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCT
1 TTTGT-AAAATTACCA-AAATACCACTGATTTACAAAATTACAGAAATACCCT
50000247 TGGTTTGTAG
Statistics
Matches: 88, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
53 39 0.44
54 3 0.03
55 8 0.09
56 38 0.43
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.32
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTGATTTACAAAATTACAGAAATACCCTCAA
Found at i:50000204 original size:29 final size:27
Alignment explanation
Indices: 50000145--50000252 Score: 112
Period size: 27 Copynumber: 3.9 Consensus size: 27
50000135 CTCAATTTGT
* *
50000145 AAAATTACCA-AAATACCCCTGATTTAC
1 AAAATTA-CAGAAATACCCTTGGTTTAC
*
50000172 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACAGAAATACCCTTG-GTTTAC
* *
50000199 TAAAAATTATAGAAATACCATTGGTTTAC
1 --AAAATTACAGAAATACCCTTGGTTTAC
*
50000228 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACAGAAATACCCTTGGTTT
50000253 GTAGATTTAC
Statistics
Matches: 68, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
26 2 0.03
27 40 0.59
28 6 0.09
29 20 0.29
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACAGAAATACCCTTGGTTTAC
Found at i:50001207 original size:25 final size:24
Alignment explanation
Indices: 50001169--50001238 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
50001159 AAGACGTGTT
*
50001169 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
50001193 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
50001218 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
50001239 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:50001251 original size:24 final size:24
Alignment explanation
Indices: 50001167--50001251 Score: 100
Period size: 25 Copynumber: 3.5 Consensus size: 24
50001157 GGAAGACGTG
*
50001167 TTAAAAGGGCTCTGCCCCAGTTTA
1 TTAAAAGGGCTTTGCCCCAGTTTA
**
50001191 CCGAAAAGGGCTTTGCCCCAGTTTA
1 -TTAAAAGGGCTTTGCCCCAGTTTA
*
50001216 TCAGAAAGGGCTTTGCCCCAG-TTA
1 TTA-AAAGGGCTTTGCCCCAGTTTA
50001240 TTAAAAGAGGCT
1 TTAAAAG-GGCT
50001252 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (24 bp):
TTAAAAGGGCTTTGCCCCAGTTTA
Found at i:50001494 original size:31 final size:31
Alignment explanation
Indices: 50001459--50001630 Score: 299
Period size: 31 Copynumber: 5.5 Consensus size: 31
50001449 CATTTACAGT
50001459 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
50001490 AAAGGCTTCAGCCCAGTGATATTATTTATTA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
50001521 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
50001552 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
**
50001583 AAAGGCTTCAACCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
50001614 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
50001631 AACCGTTAAA
Statistics
Matches: 131, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 131 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Done.