Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 150 of 344
Found at i:50004392 original size:37 final size:37
Alignment explanation
Indices: 50004285--50004402 Score: 184
Period size: 37 Copynumber: 3.2 Consensus size: 37
50004275 CTCAGACAAA
* * *
50004285 ATCTCCACACGGAGTTATCGGGTCTTACCCGGACA-AA
1 ATCTCCACACGTAGTCATCGGGTCTTACCCGGA-ATAT
50004322 ATCTCCACACGTAGTCATCGGGTCTTACCCGGAATAT
1 ATCTCCACACGTAGTCATCGGGTCTTACCCGGAATAT
50004359 ATCTCCACACGTAGTCATCGGGTCTTACCCGGAATAT
1 ATCTCCACACGTAGTCATCGGGTCTTACCCGGAATAT
*
50004396 ATTTCCA
1 ATCTCCA
50004403 AGTTTCATGT
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
36 1 0.01
37 75 0.99
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (37 bp):
ATCTCCACACGTAGTCATCGGGTCTTACCCGGAATAT
Found at i:50004664 original size:50 final size:48
Alignment explanation
Indices: 50004538--50004722 Score: 264
Period size: 48 Copynumber: 3.8 Consensus size: 48
50004528 GCACATCGCC
50004538 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
50004586 TACATAGTTCACACTAGCCATTCGGCTTTACTACATATACATATCTCATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
50004636 TATATATTTCACA-TTGACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCA
* * *
50004684 TACATATTTCACATTAGCCATTCGGCCTTATCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
50004723 TGCATGTTCA
Statistics
Matches: 121, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
48 77 0.64
49 4 0.03
50 40 0.33
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.35
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:50004695 original size:98 final size:98
Alignment explanation
Indices: 50004541--50004722 Score: 287
Period size: 98 Copynumber: 1.9 Consensus size: 98
50004531 CATCGCCTAC
50004541 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCCA
*
50004606 TTCGGCTTTA-CTACATATACATATCTCATATAT
66 TTCGGCCTTATC-ACATATACATATCTCATATAT
* * * *
50004639 ATATTTCACA-TTGACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCC
1 ATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCC
50004703 ATTCGGCCTTATCACATATA
65 ATTCGGCCTTATCACATATA
50004723 TGCATGTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
97 2 0.03
98 74 0.96
99 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.35
Consensus pattern (98 bp):
ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCCA
TTCGGCCTTATCACATATACATATCTCATATAT
Found at i:50004829 original size:47 final size:47
Alignment explanation
Indices: 50004692--50004816 Score: 196
Period size: 47 Copynumber: 2.7 Consensus size: 47
50004682 CATACATATT
* *
50004692 TCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
50004739 TCACATTGGCCATTTGGCCTTATCACACATATGCGTGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
50004786 TCACATTGGCCATTCGGCCTTATCTCATATA
1 TCACATTGGCCATTCGGCCTTATCACATATA
50004817 CACACAATCA
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:50008121 original size:37 final size:36
Alignment explanation
Indices: 50008070--50008139 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 36
50008060 ATTCCAAAAA
*
50008070 TAATATTATTTTAATAAT-TTAATATTAAATTAAATT
1 TAATATTATCTTAATAATGTT-ATATTAAATTAAATT
* *
50008106 TAATACTTATCTTAATAGTGTTATATTAATTTAA
1 TAATA-TTATCTTAATAATGTTATATTAAATTAA
50008140 TATTATGTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
36 5 0.17
37 22 0.76
38 2 0.07
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (36 bp):
TAATATTATCTTAATAATGTTATATTAAATTAAATT
Found at i:50010229 original size:34 final size:34
Alignment explanation
Indices: 50010183--50010275 Score: 114
Period size: 34 Copynumber: 2.7 Consensus size: 34
50010173 AAATACATTA
* *
50010183 TGGGCCTAAGCCCATATCAATAATAGTAGCAGTC
1 TGGGCCTTAGCCCATATCAATAACAGTAGCAGTC
* * *
50010217 TGGGCCTTAGCCCATTTCAGTAACAGTAGCGGTC
1 TGGGCCTTAGCCCATATCAATAACAGTAGCAGTC
* * *
50010251 TGGGCTTTAGCCCATTTCAGTAACA
1 TGGGCCTTAGCCCATATCAATAACA
50010276 TTAATCAGTG
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 53 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.27
Consensus pattern (34 bp):
TGGGCCTTAGCCCATATCAATAACAGTAGCAGTC
Found at i:50010291 original size:18 final size:17
Alignment explanation
Indices: 50010268--50010344 Score: 50
Period size: 18 Copynumber: 4.3 Consensus size: 17
50010258 TAGCCCATTT
50010268 CAGTAACATTAATCAGTG
1 CAGTAACA-TAATCAGTG
* *
50010286 CAGTAATAATAATAAGTG
1 CAGTAA-CATAATCAGTG
*
50010304 -ATGTAACCATGATC-GATG
1 CA-GTAA-CATAATCAG-TG
*
50010322 CAGTAACAGTAATTAGTG
1 CAGTAACA-TAATCAGTG
50010340 CAGTA
1 CAGTA
50010345 TGCAAGCAGA
Statistics
Matches: 45, Mismatches: 8, Indels: 12
0.69 0.12 0.18
Matches are distributed among these distances:
17 4 0.09
18 38 0.84
19 3 0.07
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.27
Consensus pattern (17 bp):
CAGTAACATAATCAGTG
Found at i:50010717 original size:27 final size:27
Alignment explanation
Indices: 50010672--50010815 Score: 191
Period size: 27 Copynumber: 5.3 Consensus size: 27
50010662 GAATAAATTT
* * * *
50010672 GTCATTTTACCTTACAGGGGTATTACA
1 GTCATTTTACCCTATAGGGGTATTTCG
* *
50010699 GTCATTTTACGCTATAGGGGTATTTTG
1 GTCATTTTACCCTATAGGGGTATTTCG
* *
50010726 GTCATTCTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
50010753 GTCATTTTACCCTAT-GAGGGTATTTCG
1 GTCATTTTACCCTATAG-GGGTATTTCG
50010780 GTCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
*
50010807 ATCATTTTA
1 GTCATTTTA
50010816 TCACATAAGG
Statistics
Matches: 103, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 1 0.01
27 101 0.98
28 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTTCG
Found at i:50010989 original size:27 final size:27
Alignment explanation
Indices: 50010807--50010988 Score: 274
Period size: 27 Copynumber: 6.7 Consensus size: 27
50010797 GGGTATTTCG
50010807 ATCATTTTATCACATAAGGGCAAAATC
1 ATCATTTTATCACATAAGGGCAAAATC
* *
50010834 ATTATTTTATCACATAAGGGAAAAATC
1 ATCATTTTATCACATAAGGGCAAAATC
* *
50010861 ATCATTTTATCACATGAGGGCAAAGTC
1 ATCATTTTATCACATAAGGGCAAAATC
* *
50010888 GTCATTTTATCACATAAGGGCAAAATT
1 ATCATTTTATCACATAAGGGCAAAATC
*
50010915 GTCATTTTATCACATAAGGGCAAAATC
1 ATCATTTTATCACATAAGGGCAAAATC
*
50010942 ATCATTTTATCACATAAGGGTAAAATC
1 ATCATTTTATCACATAAGGGCAAAATC
* *
50010969 GTCATTTTATCACATGAGGG
1 ATCATTTTATCACATAAGGG
50010989 TTCAGGTACG
Statistics
Matches: 140, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (27 bp):
ATCATTTTATCACATAAGGGCAAAATC
Found at i:50018144 original size:18 final size:18
Alignment explanation
Indices: 50018121--50018157 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
50018111 TAGATATAGG
50018121 ATCCACTTACTCCTATAT
1 ATCCACTTACTCCTATAT
50018139 ATCCACTTACTCCTATAT
1 ATCCACTTACTCCTATAT
50018157 A
1 A
50018158 GCCTGTATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.32, G:0.00, T:0.38
Consensus pattern (18 bp):
ATCCACTTACTCCTATAT
Found at i:50030022 original size:46 final size:46
Alignment explanation
Indices: 50029945--50030119 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
50029935 TGTAACCTGC
* *
50029945 CCATAAGCGAACTCGGACTTAATTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* * * * *
50029991 CCATAAGTGAACTCGGACACAACTTACCGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCGCAT
* * *
50030041 -C-TCA-CGAACTCGGACTCAACTCAACGAGCGCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
50030084 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
50030120 ATAACCAAAT
Statistics
Matches: 101, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 56 0.55
47 24 0.24
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:50030065 original size:93 final size:93
Alignment explanation
Indices: 50029952--50030121 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 93
50029942 TGCCCATAAG
* * * * * *
50029952 CGAACTCGGACTTAATTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACACAACTTA
1 CGAACTCGGACTCAACTCAACGAGCGCGGACATTCGCATCCATAAGTGAACTCGAACACAACTCA
*
50030017 CCGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
50030045 CGAACTCGGACTCAACTCAACGAGCGCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCGCGGACATTCGCATCCATAAGTGAACTCGAACACAACTCA
50030110 ACGAGCTCGGAT
66 ACGAGCTCGGAT
50030122 AACCAAATAT
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCGCGGACATTCGCATCCATAAGTGAACTCGAACACAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:50034788 original size:23 final size:23
Alignment explanation
Indices: 50034724--50034781 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
50034714 ATGTTTATCG
50034724 CTATTAGCAGCTTTACTGCATTA
1 CTATTAGCAGCTTTACTGCATTA
* *
50034747 CTATTAGTAGCTTTACTGCGTTA
1 CTATTAGCAGCTTTACTGCATTA
50034770 CTATTAGCAGCT
1 CTATTAGCAGCT
50034782 ACGCTGCAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.40
Consensus pattern (23 bp):
CTATTAGCAGCTTTACTGCATTA
Found at i:50036452 original size:22 final size:20
Alignment explanation
Indices: 50036413--50036466 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
50036403 TGGGGAAGTG
*
50036413 TGGGAGCAAATTTAGGGATAAA
1 TGGGAG-AAAATTAGGGAT-AA
*
50036435 TGGGAGAAAATTAGGGGATTA
1 TGGGAGAAAATTA-GGGATAA
*
50036456 TGGGGGAAAAT
1 TGGGAGAAAAT
50036467 ATCCAAAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 17 0.61
22 11 0.39
ACGTcount: A:0.39, C:0.02, G:0.37, T:0.22
Consensus pattern (20 bp):
TGGGAGAAAATTAGGGATAA
Found at i:50058890 original size:40 final size:40
Alignment explanation
Indices: 50058844--50059087 Score: 257
Period size: 40 Copynumber: 6.1 Consensus size: 40
50058834 TCGGCTTTAA
*
50058844 CCGGATA-TAGCCAATCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATTAG-CAATCGCACAAATGCCTTCGGGACTTAGC
* *
50058884 CCGGATA-TAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATTAGCA-ATCGCACAAATGCCTTCGGGACTTAGC
* *
50058924 TCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATTAGCAA-TCGCACAAATGCCTTCGGGACTTAGC
* * *
50058964 CCGGA-ATTAGTAACTCGCACAAATGCCTTCCGAACTTAGC
1 CCGGATATTAGCAA-TCGCACAAATGCCTTCGGGACTTAGC
* * * * *
50059004 CC-AAAATTTGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATTAG-CAATCGCACAAATGCCTTCGGGACTTAGC
* *
50059044 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATTAG-CAATCGCACAAATGCCTTCGGGACTTAGC
50059084 CCGG
1 CCGG
50059088 TTATCATCCG
Statistics
Matches: 181, Mismatches: 17, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 3 0.02
40 176 0.97
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATTAGCAATCGCACAAATGCCTTCGGGACTTAGC
Found at i:50058982 original size:80 final size:79
Alignment explanation
Indices: 50058844--50059084 Score: 306
Period size: 80 Copynumber: 3.0 Consensus size: 79
50058834 TCGGCTTTAA
* * **
50058844 CCGGATATAGCCAA-TCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAGTTCGCACAAA
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAA
50058907 TGCCTTCGGGACTTAG
64 TGCCTTCGGGACTTAG
50058923 CTCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAAT
1 C-CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAAT
* *
50058988 GCCTTCCGAACTTAG
65 GCCTTCGGGACTTAG
** * * * * * *
50059003 CCCAAAATTTGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAAT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAAT
50059068 GCCTTCGGGACTTAG
65 GCCTTCGGGACTTAG
50059083 CC
1 CC
50059085 CGGTTATCAT
Statistics
Matches: 142, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
79 6 0.04
80 134 0.94
81 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATG
CCTTCGGGACTTAG
Found at i:50066981 original size:40 final size:39
Alignment explanation
Indices: 50066932--50067161 Score: 302
Period size: 40 Copynumber: 5.8 Consensus size: 39
50066922 ATGTAGCCAA
* *
50066932 TCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAGT
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA-C
50066972 TCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAAC
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-AC
50067012 TCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAAC
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT-AC
* * ** *
50067052 TCGCACAAATGTCTTCCGGACTTAGCCTAGAATTTGTCAC
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT-AC
*
50067092 TAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTCAC
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT-AC
*
50067132 TAGCACAAATGCCTTCGGGACTTAGCCCGG
1 TCGCACAAATGCCTTCGGGACTTAGCCCGG
50067162 TTATCATCCG
Statistics
Matches: 174, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
40 171 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
TCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAC
Found at i:50072010 original size:40 final size:40
Alignment explanation
Indices: 50071955--50072156 Score: 284
Period size: 40 Copynumber: 5.0 Consensus size: 40
50071945 TGGATGATAA
* * *
50071955 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
50071995 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
50072035 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
50072075 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
50072115 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
50072155 CC
1 CC
50072157 AGTTAAATCC
Statistics
Matches: 149, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
39 4 0.03
40 144 0.97
41 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:50072088 original size:80 final size:80
Alignment explanation
Indices: 50071955--50072133 Score: 313
Period size: 80 Copynumber: 2.2 Consensus size: 80
50071945 TGGATGATAA
*
50071955 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
50072020 TGCGAGTTACCATAT
66 TGCGAGTTACCATAT
* *
50072035 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
*
50072100 TGCGAGTTACTATAT
66 TGCGAGTTACCATAT
*
50072115 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
50072134 TATTCGAGCG
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 94 1.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACCATAT
Found at i:50074324 original size:27 final size:27
Alignment explanation
Indices: 50074294--50074498 Score: 241
Period size: 27 Copynumber: 7.6 Consensus size: 27
50074284 ATATCGAGTC
* * *
50074294 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
*
50074321 CGCACACTTAGTGTTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
50074348 CGTACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
50074375 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** ** *
50074403 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
50074430 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* *
50074457 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
50074484 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50074499 GTACAATTTA
Statistics
Matches: 155, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
27 131 0.85
28 24 0.15
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:50082394 original size:27 final size:27
Alignment explanation
Indices: 50082377--50082581 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
50082367 ATATCGAGTC
* * *
50082377 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
50082404 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
50082431 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
50082458 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** ** *
50082486 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
50082513 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* *
50082540 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
50082567 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50082582 GTACAATTTA
Statistics
Matches: 159, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
27 135 0.85
28 24 0.15
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:50085274 original size:86 final size:85
Alignment explanation
Indices: 50085173--50085329 Score: 212
Period size: 85 Copynumber: 1.8 Consensus size: 85
50085163 TGTGTTATCA
* * *
50085173 TGTAAGACCACGTCTGGGA-CGTTGGCATCGAT-TTGTGATTTACGTGTAAGACCATGTCTGGGA
1 TGTAAGACCACGTCTGGGATAG-TGGCATCGATATT-TGA-TTACATGTAAGACCACGTCTGGGA
50085236 CATTGGCATCGTATATGATTTCG
63 CATTGGCATCGTATATGATTTCG
* *
50085259 TGTAAGACC-CTGTCTGGGATAGTGGTATCGATATTTGATTACATGTAAGACCACGTCTGGGACG
1 TGTAAGACCAC-GTCTGGGATAGTGGCATCGATATTTGATTACATGTAAGACCACGTCTGGGACA
50085323 TTGGCAT
65 TTGGCAT
50085330 TGTACGAGCT
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
85 31 0.49
86 29 0.46
87 3 0.05
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (85 bp):
TGTAAGACCACGTCTGGGATAGTGGCATCGATATTTGATTACATGTAAGACCACGTCTGGGACAT
TGGCATCGTATATGATTTCG
Found at i:50085298 original size:43 final size:42
Alignment explanation
Indices: 50085173--50085329 Score: 158
Period size: 43 Copynumber: 3.6 Consensus size: 42
50085163 TGTGTTATCA
*
50085173 TGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGTGATTTACG
1 TGTAAGACCACGTCTGGGAAG-TGGCATCGATATT-TGATTT-CG
* * *
50085217 TGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATTTCG
1 TGTAAGACCACGTCTGGGA-AGTGGCATCGATATTTGATTTCG
* * *
50085259 TGTAAGACC-CTGTCTGGGATAGTGGTATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGA-AGTGGCATCGATATTTGATTTCG
*
50085302 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGAAG-TGGCAT
50085330 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
42 28 0.30
43 38 0.40
44 28 0.30
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGAAGTGGCATCGATATTTGATTTCG
Found at i:50091918 original size:38 final size:38
Alignment explanation
Indices: 50091876--50091985 Score: 105
Period size: 41 Copynumber: 2.8 Consensus size: 38
50091866 TCGGATAGTT
*
50091876 CGAAGCAAAGTTGACACCCAGTGTCTCATCG-GCCTAGC
1 CGAAGCAAAG-TGACACCCAGTGTCTCATCGAACCTAGC
* ** * * *
50091914 CGAAGTAAAGTGGTACCCAGTATCTCATCGAATCTATC
1 CGAAGCAAAGTGACACCCAGTGTCTCATCGAACCTAGC
*
50091952 CGAAGTACAATAGTGACACCTAGTGTCTCATCGA
1 CGAAG--CAA-AGTGACACCCAGTGTCTCATCGA
50091986 CTCGAGGTCG
Statistics
Matches: 56, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
37 17 0.30
38 18 0.32
40 2 0.04
41 19 0.34
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (38 bp):
CGAAGCAAAGTGACACCCAGTGTCTCATCGAACCTAGC
Found at i:50091984 original size:41 final size:40
Alignment explanation
Indices: 50091887--50091985 Score: 98
Period size: 38 Copynumber: 2.5 Consensus size: 40
50091877 GAAGCAAAGT
* *
50091887 TGACACCCAGTGTCTCATCG-GCCTAGCCGAAGTAAAGTGG
1 TGACA-CCAGTGTCTCATCGAACCTAGCCGAAGTAAAGTAG
* * *
50091927 T-AC-CCAGTATCTCATCGAATCTATCCGAAGTACAA-TAG
1 TGACACCAGTGTCTCATCGAACCTAGCCGAAGTA-AAGTAG
50091965 TGACACCTAGTGTCTCATCGA
1 TGACACC-AGTGTCTCATCGA
50091986 CTCGAGGTCG
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
37 13 0.27
38 14 0.29
39 6 0.12
40 3 0.06
41 12 0.25
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
TGACACCAGTGTCTCATCGAACCTAGCCGAAGTAAAGTAG
Found at i:50097059 original size:28 final size:28
Alignment explanation
Indices: 50097015--50097072 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
50097005 CACCTCACCA
50097015 GACCAATACTCTAGCCGGTTTCTAATCT
1 GACCAATACTCTAGCCGGTTTCTAATCT
*
50097043 GACCAATACTCTGGCCGGTTTCTAATCT
1 GACCAATACTCTAGCCGGTTTCTAATCT
50097071 GA
1 GA
50097073 TTGGTATAGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (28 bp):
GACCAATACTCTAGCCGGTTTCTAATCT
Found at i:50098767 original size:31 final size:32
Alignment explanation
Indices: 50098731--50098802 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 32
50098721 AAGAAAAGAT
*
50098731 AATAGTTCAACT-ACTTAAATAAAAACTTTTG
1 AATAGTTCAACTGACTTAAATAAAAACTTTTA
* * *
50098762 AATAGTTC-AGTGACTTAAATGAAAATTTTTA
1 AATAGTTCAACTGACTTAAATAAAAACTTTTA
*
50098793 AATAATTCAA
1 AATAGTTCAA
50098803 TAACTAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
30 2 0.06
31 31 0.91
32 1 0.03
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (32 bp):
AATAGTTCAACTGACTTAAATAAAAACTTTTA
Found at i:50100086 original size:14 final size:14
Alignment explanation
Indices: 50100067--50100097 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
50100057 CTAAAGTCCC
50100067 CACACTTTTGCTCG
1 CACACTTTTGCTCG
50100081 CACACTTTTGCTCG
1 CACACTTTTGCTCG
50100095 CAC
1 CAC
50100098 GGTTGTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.16, C:0.39, G:0.13, T:0.32
Consensus pattern (14 bp):
CACACTTTTGCTCG
Found at i:50101268 original size:20 final size:20
Alignment explanation
Indices: 50101243--50101280 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
50101233 CAAAGGCAGC
*
50101243 CATATACCCAAGTTGTTAAG
1 CATATACCCAAGTAGTTAAG
*
50101263 CATATACTCAAGTAGTTA
1 CATATACCCAAGTAGTTA
50101281 CGAAGAATGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (20 bp):
CATATACCCAAGTAGTTAAG
Found at i:50102936 original size:10 final size:10
Alignment explanation
Indices: 50102918--50102953 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
50102908 ATATAGAAAA
*
50102918 AAATAAATAG
1 AAATGAATAG
50102928 AAATGAATAG
1 AAATGAATAG
50102938 AAATGAATAG
1 AAATGAATAG
50102948 AAATGA
1 AAATGA
50102954 TAAAGTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.17, T:0.19
Consensus pattern (10 bp):
AAATGAATAG
Found at i:50104057 original size:56 final size:56
Alignment explanation
Indices: 50103971--50104087 Score: 207
Period size: 56 Copynumber: 2.1 Consensus size: 56
50103961 ACAAGGGATG
50103971 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* * *
50104027 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGGAGT
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
50104083 ATGGG
1 ATGGG
50104088 TAATAAAATA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.44, C:0.08, G:0.25, T:0.24
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:50105425 original size:40 final size:40
Alignment explanation
Indices: 50105341--50105565 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
50105331 TCGAATGATG
* * * * *
50105341 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
50105381 TCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
50105421 TCCGGGCTAAG-CTCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50105460 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50105500 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
50105541 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50105566 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 32 0.20
40 118 0.74
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50105572 original size:80 final size:79
Alignment explanation
Indices: 50105380--50105598 Score: 248
Period size: 79 Copynumber: 2.8 Consensus size: 79
50105370 AAGTGACCAT
* * * * *
50105380 ATCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CTCGAAGGCAT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGTCCCGAAGGCAT
50105443 TGGTGCGAGTTACTAA
64 TGGTGCGAGTTACTAA
*
50105459 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGTCCCGAAGGCATT
*
50105524 TGTGCGAGTTACTATA
65 GGTGCGAGTTACTA-A
* ** * * *
50105540 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTAAATCCGGGTTAAGTCCCGAAGG
50105599 TACGTGATTT
Statistics
Matches: 121, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 60 0.50
80 58 0.48
81 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTG
GTGCGAGTTACTAA
Found at i:50110776 original size:26 final size:26
Alignment explanation
Indices: 50110739--50110822 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
50110729 TGATACAAAT
* *
50110739 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
50110765 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
50110791 TGATAATGAGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
50110817 TGATAA
1 TGATAA
50110823 GAATTTCATG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:50114501 original size:26 final size:26
Alignment explanation
Indices: 50114472--50114547 Score: 134
Period size: 26 Copynumber: 2.9 Consensus size: 26
50114462 ATTGATAACA
*
50114472 GGTTAGGTAAATGTTCCATGATAATG
1 GGTTAGGTAAATGTTTCATGATAATG
*
50114498 GGTTAGGTAAATGTTTCATGATAGTG
1 GGTTAGGTAAATGTTTCATGATAATG
50114524 GGTTAGGTAAATGTTTCATGATAA
1 GGTTAGGTAAATGTTTCATGATAA
50114548 GAATTTCATG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.30, C:0.05, G:0.28, T:0.37
Consensus pattern (26 bp):
GGTTAGGTAAATGTTTCATGATAATG
Found at i:50126769 original size:6 final size:6
Alignment explanation
Indices: 50126758--50126787 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
50126748 TTTCATTATT
*
50126758 TTTTTC TTTTTC TATTTC TTTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
50126788 ACATGCTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTTC
Found at i:50135224 original size:27 final size:28
Alignment explanation
Indices: 50135172--50135226 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
50135162 GGAGTAGGGT
50135172 GCCGATGCCATGTCCAGACATGGTCTTA
1 GCCGATGCCATGTCCAGACATGGTCTTA
50135200 GCCGATG-CATGTCCCAGACAT-GTCTTA
1 GCCGATGCCATGT-CCAGACATGGTCTTA
50135227 CACTGGCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
27 11 0.42
28 15 0.58
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (28 bp):
GCCGATGCCATGTCCAGACATGGTCTTA
Found at i:50135267 original size:46 final size:45
Alignment explanation
Indices: 50135200--50135370 Score: 200
Period size: 46 Copynumber: 3.7 Consensus size: 45
50135190 CATGGTCTTA
50135200 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCTCGAG
* * *
50135246 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCGTCTCGAG
* * * * *
50135292 ACCGATGCTATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTGGCT-TCGT-CTCGAG
*
50135340 GCCGATGCATGTCCCAAACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
50135371 AGCTCACAAT
Statistics
Matches: 106, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
46 58 0.55
47 24 0.23
48 23 0.22
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCTCGAG
Found at i:50135368 original size:94 final size:92
Alignment explanation
Indices: 50135201--50135373 Score: 251
Period size: 94 Copynumber: 1.9 Consensus size: 92
50135191 ATGGTCTTAG
* * *
50135201 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCCAGACA
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTCCCAAACA
50135266 TGTCTTACACTAGCACTCGTCTCGATA
66 TGTCTTACACTAGCACTCGTCTCGATA
* *
50135293 CCGATGCTATGTCCTAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCCCA
1 CCGATGC-ATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGCCGATGCATGTCCCA
50135356 AACATGTCTTACACTAGC
62 AACATGTCTTACACTAGC
50135374 TCACAATAAT
Statistics
Matches: 72, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
92 7 0.10
93 12 0.17
94 51 0.71
95 2 0.03
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (92 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTCCCAAACA
TGTCTTACACTAGCACTCGTCTCGATA
Found at i:50138480 original size:47 final size:47
Alignment explanation
Indices: 50138429--50138747 Score: 505
Period size: 47 Copynumber: 6.7 Consensus size: 47
50138419 TTAGGATTCT
* * *
50138429 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
50138476 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
50138523 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
50138570 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
50138619 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
50138666 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
50138713 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
50138748 TCCCGAAGGG
Statistics
Matches: 256, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 208 0.81
49 47 0.18
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:50138504 original size:25 final size:25
Alignment explanation
Indices: 50138476--50138554 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
50138466 CTAATGGCCG
50138476 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
50138501 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
50138523 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
50138548 ATGTGAT
1 ATGTGAT
50138555 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:50138609 original size:143 final size:143
Alignment explanation
Indices: 50138450--50138747 Score: 510
Period size: 143 Copynumber: 2.1 Consensus size: 143
50138440 GTGAACATGC
*
50138450 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * * *
50138515 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAA
50138580 TGTGAAAGTGTAT
131 TGTGAAAGTGTAT
50138593 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * *
50138658 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAA
50138723 TGTGAAAGTGTAT
131 TGTGAAAGTGTAT
50138736 A-A-ATGTGATAAG
1 ATATATGTGATAAG
50138748 TCCCGAAGGG
Statistics
Matches: 147, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
141 10 0.07
142 1 0.01
143 136 0.93
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAA
TGTGAAAGTGTAT
Found at i:50138922 original size:37 final size:37
Alignment explanation
Indices: 50138866--50138944 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
50138856 CCGAGCTCTA
* * * *
50138866 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTAGAGATTATGTCCGGGT
*
50138903 AAGACCCGATAACTTCGTGTAGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTAGAGATTATGTCCGGGT
50138940 AAGAC
1 AAGAC
50138945 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTAGAGATTATGTCCGGGT
Found at i:50140559 original size:40 final size:40
Alignment explanation
Indices: 50140157--50140547 Score: 633
Period size: 40 Copynumber: 9.8 Consensus size: 40
50140147 GAGAATTGAG
50140157 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
50140197 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
50140237 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
50140277 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
50140317 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
50140357 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
50140397 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
50140437 AGTGATATATCCGGGCTAAGTCCCG-AGAAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAG-AGCATTCGTGCT
* * *
50140477 AGTGATATATCCGTGCTAA-ACCCCAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
50140516 GGTGTTATATCCGGGCTAGGTCTCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
50140548 ATCATGCTGG
Statistics
Matches: 324, Mismatches: 24, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
39 31 0.10
40 293 0.90
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:50140764 original size:25 final size:25
Alignment explanation
Indices: 50140723--50140774 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
50140713 TGTGTAATAA
50140723 TGAATGAATAAGAGCACTATGTGTG
1 TGAATGAATAAGAGCACTATGTGTG
* *
50140748 TGAATG-ATTAGAGGCACTGTGTGTG
1 TGAATGAATAAGA-GCACTATGTGTG
50140773 TG
1 TG
50140775 CGAATTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (25 bp):
TGAATGAATAAGAGCACTATGTGTG
Found at i:50144144 original size:47 final size:47
Alignment explanation
Indices: 50144093--50144411 Score: 496
Period size: 47 Copynumber: 6.7 Consensus size: 47
50144083 TTAGGATTCT
* * *
50144093 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
50144140 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
50144187 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
50144234 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
50144283 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
50144330 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
50144377 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
50144412 TCCCGAAGGG
Statistics
Matches: 254, Mismatches: 15, Indels: 6
0.92 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 206 0.81
49 47 0.19
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:50144168 original size:25 final size:25
Alignment explanation
Indices: 50144140--50144218 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
50144130 CTAATGGCCG
50144140 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ** *
50144165 ATGTGAT-AAGGCCTAA-TGGCT-G
1 ATGTGATGAATGTGAAAGTGTATAT
50144187 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
50144212 ATGTGAT
1 ATGTGAT
50144219 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.34
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:50144271 original size:143 final size:143
Alignment explanation
Indices: 50144114--50144411 Score: 501
Period size: 143 Copynumber: 2.1 Consensus size: 143
50144104 GTGAACATGC
*
50144114 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * * * *
50144179 AATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAA
50144244 TGTGAAAGTGTAT
131 TGTGAAAGTGTAT
50144257 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * *
50144322 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAA
50144387 TGTGAAAGTGTAT
131 TGTGAAAGTGTAT
50144400 A-A-ATGTGATAAG
1 ATATATGTGATAAG
50144412 TCCCGAAGGG
Statistics
Matches: 146, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
141 10 0.07
142 1 0.01
143 135 0.92
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAA
TGTGAAAGTGTAT
Found at i:50144586 original size:37 final size:37
Alignment explanation
Indices: 50144530--50144608 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50144520 CCGAGCTCTA
* * *
50144530 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
50144567 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
50144604 AAGAC
1 AAGAC
50144609 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:50152754 original size:29 final size:28
Alignment explanation
Indices: 50152718--50152795 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
50152708 TCATGAGATT
50152718 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
50152748 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
50152775 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
50152796 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:50153072 original size:173 final size:174
Alignment explanation
Indices: 50152748--50153074 Score: 548
Period size: 173 Copynumber: 1.9 Consensus size: 174
50152738 AAATTGTACA
* *
50152748 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* * *
50152813 TGTGCGAACCCAATATATATTTTTTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
50152878 TTTTGGACAGCGGAAAAGGTAAGTGTGCGGACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGGACTTGAAATGCATG
* * * *
50152922 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
50152987 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
*
50153051 TTTTGGACAGTGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
50153075 ACCTTGAGTT
Statistics
Matches: 142, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
173 78 0.55
174 64 0.45
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGGACTTGAAATGCATG
Found at i:50156050 original size:49 final size:50
Alignment explanation
Indices: 50155993--50156132 Score: 183
Period size: 49 Copynumber: 2.8 Consensus size: 50
50155983 GTAGACAAGG
* * *
50155993 CTATCTGGTACGCATAGTAGCCTGCACTTAGTATTACACATGCGACC-AA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
* *
50156042 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
* * * * *
50156092 CCATTTGATACACGTAGTAGCCTGCACTTAATACTACACAC
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACAC
50156133 ATAACCTCAC
Statistics
Matches: 79, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
49 42 0.53
50 37 0.47
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (50 bp):
CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
Found at i:50156403 original size:27 final size:27
Alignment explanation
Indices: 50156364--50156416 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
50156354 GGTACAACCT
* *
50156364 ATGTAATAGTAATTTAACATTCAATTC
1 ATGTAACAATAATTTAACATTCAATTC
**
50156391 ATGTAACAATAATTTGTCATTCAATT
1 ATGTAACAATAATTTAACATTCAATT
50156417 TCACATGACA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.42
Consensus pattern (27 bp):
ATGTAACAATAATTTAACATTCAATTC
Found at i:50169796 original size:29 final size:30
Alignment explanation
Indices: 50169753--50169811 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
50169743 ATTTAATACG
50169753 AACTTTGGCAAAATTACA-TTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* * *
50169782 AACTTTTGCATAATTACACTTTTGCTCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
50169812 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:50178061 original size:46 final size:48
Alignment explanation
Indices: 50177963--50178072 Score: 134
Period size: 46 Copynumber: 2.3 Consensus size: 48
50177953 GTCATGTCCT
* * * * *
50177963 AGACAGGTCTTACACTAGCTTATATATCTCGAGGCCGATGCATGTCCT
1 AGACATGTCTTACACTAGCTTATACATCTCAAGGCCGATGCATATCCC
* * *
50178011 AGACATGTCTTACACTAGC-TCT-CATCTCAATGCTGATGCATATCCC
1 AGACATGTCTTACACTAGCTTATACATCTCAAGGCCGATGCATATCCC
50178057 AGACATGTCTTACACT
1 AGACATGTCTTACACT
50178073 TACTTTCGTA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
46 34 0.63
47 2 0.04
48 18 0.33
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (48 bp):
AGACATGTCTTACACTAGCTTATACATCTCAAGGCCGATGCATATCCC
Found at i:50184073 original size:49 final size:49
Alignment explanation
Indices: 50183996--50184190 Score: 257
Period size: 49 Copynumber: 3.9 Consensus size: 49
50183986 ACTATTGTGA
* *
50183996 GGTCACATGTGTAGTACTAAATGCAGGCTACTACGCGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * *
50184045 GGTCTCATGTGTAGTACTAATTGCAGGCTACTACGCGTACCTA-AAAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC-AGATAATT
* * * *
50184094 GTGATCACGTGTGTAGTAATAAGTGCAGGCTACTACGTGTACCAGATTATT
1 G-G-TCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
50184145 GGTCACATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
50184191 GCTTCAGCTA
Statistics
Matches: 125, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
49 83 0.66
50 3 0.02
51 39 0.31
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:50184176 original size:100 final size:101
Alignment explanation
Indices: 50183989--50184185 Score: 288
Period size: 100 Copynumber: 2.0 Consensus size: 101
50183979 CAAATGAACT
* * *
50183989 ATTGTGAGGTCACATGTGTAGTACTAAATGCAGGCTACTACGCGTACCGGATAATTGGTCTCATG
1 ATTGTGA-GTCACATGTGTAGTAATAAATGCAGGCTACTACGCGTACCAGATAATTGGTCACATG
*
50184054 TGTAGTACTAATTGCAGGCTACTACGCGTACCTAAAA
65 TGTAGTACTAAGTGCAGGCTACTACGCGTACCTAAAA
* * * *
50184091 ATTGTGA-TCACGTGTGTAGTAATAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCACATGT
1 ATTGTGAGTCACATGTGTAGTAATAAATGCAGGCTACTACGCGTACCAGATAATTGGTCACATGT
* *
50184155 GTAGTACTAAGTGTAGGCTACTATGCGTACC
66 GTAGTACTAAGTGCAGGCTACTACGCGTACC
50184186 AGATAGCTTC
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 78 0.92
102 7 0.08
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (101 bp):
ATTGTGAGTCACATGTGTAGTAATAAATGCAGGCTACTACGCGTACCAGATAATTGGTCACATGT
GTAGTACTAAGTGCAGGCTACTACGCGTACCTAAAA
Found at i:50187196 original size:15 final size:15
Alignment explanation
Indices: 50187176--50187227 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
50187166 CTTGGGTTTT
50187176 TTTATTCTGGATTTC
1 TTTATTCTGGATTTC
*
50187191 TTTATTCTGGGTTT-
1 TTTATTCTGGATTTC
50187205 TTCTA-TCTTGGATTTC
1 TT-TATTC-TGGATTTC
50187221 TTTATTC
1 TTTATTC
50187228 AGTTTTCTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
14 4 0.13
15 23 0.74
16 4 0.13
ACGTcount: A:0.12, C:0.13, G:0.13, T:0.62
Consensus pattern (15 bp):
TTTATTCTGGATTTC
Found at i:50187204 original size:30 final size:30
Alignment explanation
Indices: 50187168--50187227 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
50187158 TATCATATCT
*
50187168 TGGGTTTTTTTAT-TCTGGATTTCTTTATTC
1 TGGGTTTTTCTATCT-TGGATTTCTTTATTC
50187198 TGGGTTTTTCTATCTTGGATTTCTTTATTC
1 TGGGTTTTTCTATCTTGGATTTCTTTATTC
50187228 AGTTTTCTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.10, C:0.12, G:0.17, T:0.62
Consensus pattern (30 bp):
TGGGTTTTTCTATCTTGGATTTCTTTATTC
Found at i:50189369 original size:49 final size:51
Alignment explanation
Indices: 50189239--50189380 Score: 157
Period size: 51 Copynumber: 2.8 Consensus size: 51
50189229 CAGGATAATA
*
50189239 GGTCGCATGTGTAGTACTAAGTGCAGGCTACT-TTGCGTACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATT-CGTACCAGAAAACTGT
* * * * **
50189290 GATCACGTGTGTAATACTAAGTGCAGGCTACTACTT-GTACCAGATTA-T-T
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA-TTCGTACCAGAAAACTGT
* *
50189339 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATACGTACCA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATTCGTACCA
50189381 AATAGCTTCG
Statistics
Matches: 75, Mismatches: 13, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
48 1 0.01
49 35 0.47
50 1 0.01
51 36 0.48
53 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.30
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATTCGTACCAGAAAACTGT
Found at i:50191541 original size:26 final size:26
Alignment explanation
Indices: 50191484--50191541 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
50191474 ACAAATTTTC
*
50191484 TCAAAATTTTACTAGCAGTAAAATCG
1 TCAAAATTTTAATAGCAGTAAAATCG
* * *
50191510 TTAAAATTTTAATGAG-GGTAAAATTG
1 TCAAAATTTTAAT-AGCAGTAAAATCG
50191536 TCAAAA
1 TCAAAA
50191542 ACATTACTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTAATAGCAGTAAAATCG
Found at i:50193644 original size:40 final size:40
Alignment explanation
Indices: 50193560--50193784 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
50193550 TTGAATGATG
* * * *
50193560 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
50193600 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50193640 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50193679 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50193719 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
50193760 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50193785 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 120 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50193802 original size:80 final size:80
Alignment explanation
Indices: 50193560--50193817 Score: 224
Period size: 80 Copynumber: 3.2 Consensus size: 80
50193550 TTGAATGATG
* * * * * * * *
50193560 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCAAAGGCAT
** *
50193623 TTGTGCGAGAT-ACTAAT
64 TTGAACGAG-TGACTAAA
* * *
50193640 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCAAAGGCATTT
** *
50193704 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* *
50193719 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCAAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCAAAGGCATT
*
50193783 TGAACGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
50193799 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
50193818 TACGTGATTT
Statistics
Matches: 153, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.01
79 74 0.48
80 75 0.49
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCAAAGGCATTT
GAACGAGTGACTAAA
Found at i:50193806 original size:119 final size:119
Alignment explanation
Indices: 50193560--50193817 Score: 274
Period size: 119 Copynumber: 2.2 Consensus size: 119
50193550 TTGAATGATG
* *
50193560 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* * ** *
50193625 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTGACTAAA
* * * **
50193679 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
50193742 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAACGAGTGA-CTAAA
* *
50193799 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
50193818 TACGTGATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.72
120 30 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTGACTAAA
Found at i:50196308 original size:48 final size:48
Alignment explanation
Indices: 50196237--50196414 Score: 167
Period size: 48 Copynumber: 3.8 Consensus size: 48
50196227 ACCACAGTTA
50196237 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGAT
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGAT
* *
50196285 ATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC-ACTGTTGAT
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-GTTGAT
* * * * * *
50196333 ACGTA-TGCTACTGTAAGACCATATCTGGG--AT---AT-GGCATTGAT
1 ATG-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGAT
* **
50196375 ATGAAATATC-GTGTAAGACCATGTCTGGGACATGGCATCG
1 ATGAGA-GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
50196415 ATGTGAGGCC
Statistics
Matches: 102, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
41 1 0.01
42 24 0.24
43 3 0.03
44 2 0.02
46 2 0.02
47 3 0.03
48 66 0.65
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGAT
Found at i:50196524 original size:90 final size:89
Alignment explanation
Indices: 50196375--50196542 Score: 205
Period size: 90 Copynumber: 1.9 Consensus size: 89
50196365 TGGCATTGAT
* * * * *
50196375 ATGAAATATCGTGTAAGACCATGTCTGGGACATGGCATCGATGTGAGGCCCCGTATAAGAACATG
1 ATGAAATATCGTGTAAGACCATATATGGGACATGGCATCGATGT-AGGACCCATATAAGAACACG
*
50196440 TCTGGGACATGGCATCAGCGCCGAC
65 TCGGGGACATGGCATCAGCGCCGAC
* * *
50196465 ATGAAACT-TCGTGTAAGACCATATATGGGATATGGCATCGGCATGT-GGACCCATGTAAGACCA
1 ATGAAA-TATCGTGTAAGACCATATATGGGACATGGCATC-G-ATGTAGGACCCATATAAGAACA
50196528 CGTCGGGGACATGGC
63 CGTCGGGGACATGGC
50196543 TTTGGCATTT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
90 60 0.91
91 2 0.03
92 4 0.06
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.21
Consensus pattern (89 bp):
ATGAAATATCGTGTAAGACCATATATGGGACATGGCATCGATGTAGGACCCATATAAGAACACGT
CGGGGACATGGCATCAGCGCCGAC
Found at i:50198463 original size:47 final size:47
Alignment explanation
Indices: 50198400--50198504 Score: 183
Period size: 47 Copynumber: 2.2 Consensus size: 47
50198390 CCCTTCGGGA
* *
50198400 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
50198447 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
*
50198494 CTTACCACATA
1 CTTATCACATA
50198505 ATTAATACTA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:50207735 original size:40 final size:40
Alignment explanation
Indices: 50207684--50208148 Score: 806
Period size: 40 Copynumber: 11.6 Consensus size: 40
50207674 CATTTGAATG
50207684 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
50207724 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
50207764 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
50207804 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
50207844 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
50207884 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
50207924 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
50207964 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
50208004 ATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
50208044 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
50208084 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
50208124 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
50208149 ATTGAGCTTG
Statistics
Matches: 406, Mismatches: 17, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
39 2 0.00
40 403 0.99
41 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:50212462 original size:35 final size:35
Alignment explanation
Indices: 50212416--50212488 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
50212406 AACGCACTCA
*
50212416 AATAGACATTTAAGCTTAAATTACACTACTACATT
1 AATAGACATTTAAGCTTAAATTACACTACTAAATT
50212451 AATAGACATTTAAGCTTAAATTACACTACTAAATT
1 AATAGACATTTAAGCTTAAATTACACTACTAAATT
50212486 AAT
1 AAT
50212489 TGAATTCAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.34
Consensus pattern (35 bp):
AATAGACATTTAAGCTTAAATTACACTACTAAATT
Found at i:50212505 original size:35 final size:35
Alignment explanation
Indices: 50212416--50212497 Score: 121
Period size: 35 Copynumber: 2.4 Consensus size: 35
50212406 AACGCACTCA
* *
50212416 AATAGACATTTAAGCTTAAATTACACTACTACATT
1 AATAGACATTCAAGCTTAAATTACACTACTAAATT
*
50212451 AATAGACATTTAAGCTTAAATTACACTACTAAATT
1 AATAGACATTCAAGCTTAAATTACACTACTAAATT
*
50212486 AATTGA-ATTCAA
1 AATAGACATTCAA
50212498 TTTTTAAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
34 5 0.11
35 39 0.89
ACGTcount: A:0.45, C:0.15, G:0.06, T:0.34
Consensus pattern (35 bp):
AATAGACATTCAAGCTTAAATTACACTACTAAATT
Found at i:50212634 original size:6 final size:6
Alignment explanation
Indices: 50212620--50212648 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
50212610 TAAATTAAAA
50212620 TTTAA- TTTAAT TTTAAT TTTAAT TTTAAT
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT
50212649 CTATAAGCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
TTTAAT
Found at i:50214240 original size:12 final size:11
Alignment explanation
Indices: 50214221--50214251 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
50214211 TGTATAAAAT
50214221 TTATTTTATTA
1 TTATTTTATTA
50214232 TTAATTTTATTA
1 TT-ATTTTATTA
50214244 TTATTTTA
1 TTATTTTA
50214252 AAGGCATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:50214267 original size:30 final size:30
Alignment explanation
Indices: 50214232--50214291 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
50214222 TATTTTATTA
50214232 TTAATTTTATTATTATTTTAAAGGCATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
* * *
50214262 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
50214292 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.58
Consensus pattern (30 bp):
TTAATTTTATTATTATTTTAAAGGCATTTG
Found at i:50215832 original size:28 final size:28
Alignment explanation
Indices: 50215801--50215866 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
50215791 TATGTATGGT
*
50215801 TAATTTTTATGAGACCTATTTAGATGTG
1 TAATTTTTATGAGAACTATTTAGATGTG
* * *
50215829 TAATTTTTAGGATAATTATTTAGATGTG
1 TAATTTTTATGAGAACTATTTAGATGTG
50215857 T-ATTATTTAT
1 TAATT-TTTAT
50215867 ATTTAAAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 3 0.09
28 29 0.91
ACGTcount: A:0.30, C:0.03, G:0.15, T:0.52
Consensus pattern (28 bp):
TAATTTTTATGAGAACTATTTAGATGTG
Found at i:50215837 original size:15 final size:16
Alignment explanation
Indices: 50215817--50215865 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 16
50215807 TTATGAGACC
50215817 TATTTAGATGTGTAAT
1 TATTTAGATGTGTAAT
*
50215833 T-TTTAG--G-ATAAT
1 TATTTAGATGTGTAAT
50215845 TATTTAGATGTGT-AT
1 TATTTAGATGTGTAAT
50215860 TATTTA
1 TATTTA
50215866 TATTTAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 9
0.71 0.05 0.24
Matches are distributed among these distances:
12 5 0.19
13 6 0.22
15 14 0.52
16 2 0.07
ACGTcount: A:0.31, C:0.00, G:0.16, T:0.53
Consensus pattern (16 bp):
TATTTAGATGTGTAAT
Found at i:50216083 original size:19 final size:21
Alignment explanation
Indices: 50216042--50216085 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
50216032 GAAGAAAATA
*
50216042 AAATAGTAACTTTTAAATTGG
1 AAATAGTAACTTTTAAATGGG
*
50216063 AAATA-TAATTTTTAAA-GGG
1 AAATAGTAACTTTTAAATGGG
50216082 AAAT
1 AAAT
50216086 TTATTAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.29
20 10 0.48
21 5 0.24
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (21 bp):
AAATAGTAACTTTTAAATGGG
Found at i:50216649 original size:30 final size:30
Alignment explanation
Indices: 50216613--50216670 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
50216603 CATAAGTATA
*
50216613 ATATATCTGTCTGTTATGGGTCACTCTACG
1 ATATATCTATCTGTTATGGGTCACTCTACG
50216643 ATATATCTATCTGTTATGGGTCACTCTA
1 ATATATCTATCTGTTATGGGTCACTCTA
50216671 ACCTCCAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.41
Consensus pattern (30 bp):
ATATATCTATCTGTTATGGGTCACTCTACG
Found at i:50219253 original size:25 final size:25
Alignment explanation
Indices: 50219225--50219307 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 25
50219215 TACTGATCAG
50219225 GATGCTCGTAGGAACTATATAACAT
1 GATGCTCGTAGGAACTATATAACAT
* * *
50219250 GATGCTTGCAGGAACTATATAACAG
1 GATGCTCGTAGGAACTATATAACAT
*
50219275 GATGCTCG-AGAGAGCT-TATAACAT
1 GATGCTCGTAG-GAACTATATAACAT
*
50219299 GTTGCTCGT
1 GATGCTCGT
50219308 CCGAGCTATA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
24 16 0.33
25 33 0.67
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (25 bp):
GATGCTCGTAGGAACTATATAACAT
Found at i:50223346 original size:9 final size:9
Alignment explanation
Indices: 50223332--50223357 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
50223322 AAGTTTAGTA
50223332 AAAATATGT
1 AAAATATGT
50223341 AAAATATGT
1 AAAATATGT
50223350 AAAATATG
1 AAAATATG
50223358 GGTCACACGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.12, T:0.31
Consensus pattern (9 bp):
AAAATATGT
Found at i:50230754 original size:6 final size:6
Alignment explanation
Indices: 50230572--50230751 Score: 270
Period size: 6 Copynumber: 30.0 Consensus size: 6
50230562 AGGCAGAACT
* * * **
50230572 TGAGCC TGAGCC TGAGCC CGAGCC CGAGCC CGAGCC TGAGCC CAAGCC
1 TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC
* * * *
50230620 CGAGCC CGAGCC CGACCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC
1 TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC
50230668 TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC
1 TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC
*
50230716 TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC CGAGCC
1 TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC TGAGCC
50230752 CGAACGGTCG
Statistics
Matches: 165, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 165 1.00
ACGTcount: A:0.17, C:0.38, G:0.32, T:0.12
Consensus pattern (6 bp):
TGAGCC
Found at i:50231405 original size:14 final size:14
Alignment explanation
Indices: 50231382--50231416 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
50231372 AAAAATTGGA
*
50231382 ATAAACTTTGTAAT
1 ATAAATTTTGTAAT
*
50231396 ATAAATTTTGTTAT
1 ATAAATTTTGTAAT
50231410 ATAAATT
1 ATAAATT
50231417 AAATACATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (14 bp):
ATAAATTTTGTAAT
Found at i:50231419 original size:62 final size:62
Alignment explanation
Indices: 50231322--50231636 Score: 258
Period size: 62 Copynumber: 5.2 Consensus size: 62
50231312 TTTAACAAAT
* *
50231322 TTTGTAATATAAATTTTATTTGTAATATAAATTAAATACATTACAACACTAAAAATTGGAATAAA
1 TTTGTAATATAAA---T-TTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAATAAA
50231387 C
62 C
50231388 TTTGTAATATAAATTTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAATAAAC
1 TTTGTAATATAAATTTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAATAAAC
* * * * * *
50231450 TTTGTAATATAAA-----TTAAATACATTACA-ACCTTA-AAAATTGGAATAAACTTCGTAATAT
1 TTTGTAATATAAATTTTGTTATATAAATTAAATACATTACAACATT--AA-AAA-TT-G-GA-AT
*
50231508 AAAT
59 AAAC
* * * *
50231512 TTTGTTATATAAA-----TTAAATACATTACA-ACATT-----A---AAAATTGGAATAAAC
1 TTTGTAATATAAATTTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAATAAAC
*
50231560 TTTGTAATATAAATTTTGTTATATAAATTAAATACATTACAATATTAAAAATTGGAATAAAC
1 TTTGTAATATAAATTTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAATAAAC
50231622 TTTGTAATATAAATT
1 TTTGTAATATAAATT
50231637 AAGTACATTG
Statistics
Matches: 211, Mismatches: 17, Indels: 46
0.77 0.06 0.17
Matches are distributed among these distances:
48 17 0.08
49 1 0.00
50 1 0.00
51 2 0.01
52 3 0.01
53 12 0.06
54 5 0.02
55 5 0.02
56 5 0.02
57 13 0.06
58 4 0.02
59 3 0.01
60 1 0.00
61 1 0.00
62 124 0.59
63 1 0.00
66 13 0.06
ACGTcount: A:0.48, C:0.07, G:0.06, T:0.38
Consensus pattern (62 bp):
TTTGTAATATAAATTTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAATAAAC
Found at i:50231439 original size:24 final size:24
Alignment explanation
Indices: 50231412--50231488 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
50231402 TTTGTTATAT
50231412 AAATTAAATACATTACAACATTAA
1 AAATTAAATACATTACAACATTAA
* * *** *
50231436 AAATTGGAATAAACTTTGTA-A-TAT
1 AAATT-AAATACA-TTACAACATTAA
*
50231460 AAATTAAATACATTACAACCTTAA
1 AAATTAAATACATTACAACATTAA
50231484 AAATT
1 AAATT
50231489 GGAATAAACT
Statistics
Matches: 36, Mismatches: 13, Indels: 8
0.63 0.23 0.14
Matches are distributed among these distances:
22 3 0.08
23 5 0.14
24 19 0.53
25 6 0.17
26 3 0.08
ACGTcount: A:0.53, C:0.10, G:0.04, T:0.32
Consensus pattern (24 bp):
AAATTAAATACATTACAACATTAA
Found at i:50231448 original size:48 final size:48
Alignment explanation
Indices: 50231396--50231512 Score: 198
Period size: 48 Copynumber: 2.4 Consensus size: 48
50231386 ACTTTGTAAT
* *
50231396 ATAAATTTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGA
1 ATAAACTTTGTAATATAAATTAAATACATTACAACATTAAAAATTGGA
*
50231444 ATAAACTTTGTAATATAAATTAAATACATTACAACCTTAAAAATTGGA
1 ATAAACTTTGTAATATAAATTAAATACATTACAACATTAAAAATTGGA
*
50231492 ATAAACTTCGTAATATAAATT
1 ATAAACTTTGTAATATAAATT
50231513 TTGTTATATA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.50, C:0.09, G:0.06, T:0.36
Consensus pattern (48 bp):
ATAAACTTTGTAATATAAATTAAATACATTACAACATTAAAAATTGGA
Found at i:50231478 original size:110 final size:110
Alignment explanation
Indices: 50231340--50231574 Score: 445
Period size: 110 Copynumber: 2.1 Consensus size: 110
50231330 ATAAATTTTA
*
50231340 TTTGTAATATAAATTAAATACATTACAACAC-TAAAAATTGGAATAAACTTTGTAATATAAATTT
1 TTTGTAATATAAATTAAATACATTACAAC-CTTAAAAATTGGAATAAACTTCGTAATATAAATTT
50231404 TGTTATATAAATTAAATACATTACAACATTAAAAATTGGAATAAAC
65 TGTTATATAAATTAAATACATTACAACATTAAAAATTGGAATAAAC
50231450 TTTGTAATATAAATTAAATACATTACAACCTTAAAAATTGGAATAAACTTCGTAATATAAATTTT
1 TTTGTAATATAAATTAAATACATTACAACCTTAAAAATTGGAATAAACTTCGTAATATAAATTTT
50231515 GTTATATAAATTAAATACATTACAACATTAAAAATTGGAATAAAC
66 GTTATATAAATTAAATACATTACAACATTAAAAATTGGAATAAAC
50231560 TTTGTAATATAAATT
1 TTTGTAATATAAATT
50231575 TTGTTATATA
Statistics
Matches: 123, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
109 1 0.01
110 122 0.99
ACGTcount: A:0.49, C:0.08, G:0.06, T:0.37
Consensus pattern (110 bp):
TTTGTAATATAAATTAAATACATTACAACCTTAAAAATTGGAATAAACTTCGTAATATAAATTTT
GTTATATAAATTAAATACATTACAACATTAAAAATTGGAATAAAC
Found at i:50231577 original size:14 final size:14
Alignment explanation
Indices: 50231554--50231588 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
50231544 AAAAATTGGA
*
50231554 ATAAACTTTGTAAT
1 ATAAATTTTGTAAT
*
50231568 ATAAATTTTGTTAT
1 ATAAATTTTGTAAT
50231582 ATAAATT
1 ATAAATT
50231589 AAATACATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (14 bp):
ATAAATTTTGTAAT
Found at i:50234759 original size:14 final size:14
Alignment explanation
Indices: 50234736--50234779 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
50234726 ATAATAATAC
*
50234736 CTTTTATTTCTTCT
1 CTTTTCTTTCTTCT
*
50234750 CTTTTCTTTCCTCT
1 CTTTTCTTTCTTCT
50234764 CTTTTCTTTCTT-T
1 CTTTTCTTTCTTCT
50234777 CTT
1 CTT
50234780 CTCCTCTCCC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 4 0.15
14 23 0.85
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.70
Consensus pattern (14 bp):
CTTTTCTTTCTTCT
Found at i:50234784 original size:23 final size:24
Alignment explanation
Indices: 50234742--50234787 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
50234732 ATACCTTTTA
50234742 TTTCTTCTCTTTTCTTTCCTCTCT
1 TTTCTTCTCTTTTCTTTCCTCTCT
50234766 TTTCTT-TC-TTTCTTCTCCTCTC
1 TTTCTTCTCTTTTCTT-TCCTCTC
50234788 CCTCTCTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.29
23 9 0.43
24 6 0.29
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (24 bp):
TTTCTTCTCTTTTCTTTCCTCTCT
Found at i:50244276 original size:39 final size:38
Alignment explanation
Indices: 50244229--50244491 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 38
50244219 TGTGTGAGAT
*
50244229 TTATATCCGGGCTAAGTACCGAAGGCATTCATGCTGGTG
1 TTATATCCGGGCTAAGT-CCGAAGGCATTCGTGCTGGTG
**
50244268 TTATATCCGTTCTAAGTCCGAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCG-AAGGCATTCGTGCTGGTG
* *
50244307 TTATGTCCGGGCTAAGTCCGGAAGGCATTCATGCTGGTG
1 TTATATCCGGGCTAAGTCC-GAAGGCATTCGTGCTGGTG
* * *
50244346 TTATATCCGGGCTCAGTCCCGAAGGTATTCGTGCTAGTG
1 TTATATCCGGGCTAAGT-CCGAAGGCATTCGTGCTGGTG
* * *
50244385 TTATATCTGGGCTAAGTCCGGAAGGTATTCGTACTGGTG
1 TTATATCCGGGCTAAGTCC-GAAGGCATTCGTGCTGGTG
* * *
50244424 TTATATCTGGGCTAAGTCCCGAAGGTATTCGTGCTAGTG
1 TTATATCCGGGCTAAGT-CCGAAGGCATTCGTGCTGGTG
*
50244463 TTATATCCGGGCTCAGTCCCGAAGGCATT
1 TTATATCCGGGCTAAGT-CCGAAGGCATT
50244492 TGTGTTGGAA
Statistics
Matches: 198, Mismatches: 21, Indels: 10
0.86 0.09 0.04
Matches are distributed among these distances:
38 5 0.03
39 188 0.95
40 5 0.03
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.31
Consensus pattern (38 bp):
TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG
Found at i:50244364 original size:78 final size:78
Alignment explanation
Indices: 50244229--50244491 Score: 377
Period size: 78 Copynumber: 3.4 Consensus size: 78
50244219 TGTGTGAGAT
**
50244229 TTATATCCGGGCTAAGTACC-GAAGGCATTCATGCTGGTGTTATATCCGTTCTAAGT-CCGAAAG
1 TTATATCCGGGCTAAGT-CCGGAAGGCATTCATGCTGGTGTTATATCCGGGCTAAGTCCCG-AAG
* *
50244292 GCATTCGTGCTGGTG
64 GTATTCGTGCTAGTG
* *
50244307 TTATGTCCGGGCTAAGTCCGGAAGGCATTCATGCTGGTGTTATATCCGGGCTCAGTCCCGAAGGT
1 TTATATCCGGGCTAAGTCCGGAAGGCATTCATGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGT
50244372 ATTCGTGCTAGTG
66 ATTCGTGCTAGTG
* * * * *
50244385 TTATATCTGGGCTAAGTCCGGAAGGTATTCGTACTGGTGTTATATCTGGGCTAAGTCCCGAAGGT
1 TTATATCCGGGCTAAGTCCGGAAGGCATTCATGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGT
50244450 ATTCGTGCTAGTG
66 ATTCGTGCTAGTG
* *
50244463 TTATATCCGGGCTCAGTCCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCGGAAGGCATT
50244492 TGTGTTGGAA
Statistics
Matches: 166, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
77 2 0.01
78 161 0.97
79 3 0.02
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.31
Consensus pattern (78 bp):
TTATATCCGGGCTAAGTCCGGAAGGCATTCATGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGT
ATTCGTGCTAGTG
Found at i:50244436 original size:117 final size:117
Alignment explanation
Indices: 50244229--50244491 Score: 373
Period size: 117 Copynumber: 2.2 Consensus size: 117
50244219 TGTGTGAGAT
* * * **
50244229 TTATATCCGGGCTAAGTACCGAAGGCATTCATGCTGGTGTTATATCCGTTCTAAGTCCGAAAGGC
1 TTATATCCGGGCTCAGTCCCGAAGGCATTCATGCTAGTGTTATATCCGGGCTAAGTCCGAAAGGC
* * * *
50244294 ATTCGTGCTGGTGTTATGTCCGGGCTAAGTCCGGAAGGCATTCATGCTGGTG
66 ATTCGTACTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTG
* * * * *
50244346 TTATATCCGGGCTCAGTCCCGAAGGTATTCGTGCTAGTGTTATATCTGGGCTAAGTCCGGAAGGT
1 TTATATCCGGGCTCAGTCCCGAAGGCATTCATGCTAGTGTTATATCCGGGCTAAGTCCGAAAGGC
* * *
50244411 ATTCGTACTGGTGTTATATCTGGGCTAAGTCCCGAAGGTATTCGTGCTAGTG
66 ATTCGTACTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTG
50244463 TTATATCCGGGCTCAGTCCCGAAGGCATT
1 TTATATCCGGGCTCAGTCCCGAAGGCATT
50244492 TGTGTTGGAA
Statistics
Matches: 128, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
117 128 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.31
Consensus pattern (117 bp):
TTATATCCGGGCTCAGTCCCGAAGGCATTCATGCTAGTGTTATATCCGGGCTAAGTCCGAAAGGC
ATTCGTACTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTG
Found at i:50252404 original size:39 final size:39
Alignment explanation
Indices: 50252359--50252582 Score: 304
Period size: 39 Copynumber: 5.7 Consensus size: 39
50252349 TGTGTGAGAT
*
50252359 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
50252398 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * **
50252437 TTATGTCCGAGCTAAGTTTCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * * *
50252476 TTATATCCAGGCTAAATCTCGAAGGTATGCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * * *
50252515 TTATATCCCGGCTATGTCCCGCAGGTATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
50252554 TTATATCCGGGCTAAGTCCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
50252583 TGTGTTGGAA
Statistics
Matches: 162, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 162 1.00
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:50257456 original size:7 final size:7
Alignment explanation
Indices: 50257446--50257487 Score: 66
Period size: 7 Copynumber: 6.0 Consensus size: 7
50257436 GGGGAATAGG
50257446 GAAGGGA
1 GAAGGGA
50257453 GAAGGGA
1 GAAGGGA
*
50257460 GAAGGAA
1 GAAGGGA
*
50257467 GAATGGA
1 GAAGGGA
50257474 GAAGGGA
1 GAAGGGA
50257481 GAAGGGA
1 GAAGGGA
50257488 ACATAAAAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.45, C:0.00, G:0.52, T:0.02
Consensus pattern (7 bp):
GAAGGGA
Found at i:50260295 original size:10 final size:10
Alignment explanation
Indices: 50260280--50260304 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
50260270 TAATGAAAGT
50260280 TTAAACAAAA
1 TTAAACAAAA
50260290 TTAAACAAAA
1 TTAAACAAAA
50260300 TTAAA
1 TTAAA
50260305 GAATGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (10 bp):
TTAAACAAAA
Found at i:50262618 original size:3 final size:3
Alignment explanation
Indices: 50262612--50262658 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
50262602 CCTCATCCCT
* * *
50262612 TTC TTC TTC TTT TTC TTC TTC GTC -TC GTC TTC TTC TCTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T-TC TTC TTC
50262657 TT
1 TT
50262659 TTATTGTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
2 2 0.05
3 33 0.87
4 3 0.08
ACGTcount: A:0.00, C:0.32, G:0.04, T:0.64
Consensus pattern (3 bp):
TTC
Found at i:50265511 original size:20 final size:21
Alignment explanation
Indices: 50265468--50265512 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
50265458 ATATTTTGAA
*
50265468 TTTTAAATATTATTTTTCATT
1 TTTTAAATATTATTTTTAATT
50265489 TTTTAAA-ATT-TTTTTAAATT
1 TTTTAAATATTATTTTT-AATT
50265509 TTTT
1 TTTT
50265513 TGGTAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 5 0.23
20 10 0.45
21 7 0.32
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (21 bp):
TTTTAAATATTATTTTTAATT
Found at i:50265873 original size:19 final size:19
Alignment explanation
Indices: 50265851--50265893 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
50265841 ATACACCTCA
* *
50265851 TGTGCCAGGATCCACTTCG
1 TGTGCCAGGATACAATTCG
* *
50265870 TGTGTCAGTATACAATTCG
1 TGTGCCAGGATACAATTCG
50265889 TGTGC
1 TGTGC
50265894 TAAGATGTGC
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.19, C:0.23, G:0.26, T:0.33
Consensus pattern (19 bp):
TGTGCCAGGATACAATTCG
Found at i:50268121 original size:15 final size:15
Alignment explanation
Indices: 50268101--50268132 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
50268091 AATCCTGTAG
*
50268101 AAATTAAATATAACT
1 AAATTAAATAAAACT
50268116 AAATTAAATAAAACT
1 AAATTAAATAAAACT
50268131 AA
1 AA
50268133 TGGAAGTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (15 bp):
AAATTAAATAAAACT
Found at i:50271334 original size:35 final size:35
Alignment explanation
Indices: 50271288--50271368 Score: 117
Period size: 35 Copynumber: 2.3 Consensus size: 35
50271278 ACTCTATGTT
** * *
50271288 TTGGTGTGTTTTAGTTGGATTAGGTTTTATGAGCA
1 TTGGTGTGTTTTAGAGGGATTAGCTCTTATGAGCA
*
50271323 TTGGTGTGTTTTGGAGGGATTAGCTCTTATGAGCA
1 TTGGTGTGTTTTAGAGGGATTAGCTCTTATGAGCA
50271358 TTGGTGTGTTT
1 TTGGTGTGTTT
50271369 GGGTGGTTTG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.15, C:0.05, G:0.33, T:0.47
Consensus pattern (35 bp):
TTGGTGTGTTTTAGAGGGATTAGCTCTTATGAGCA
Found at i:50272839 original size:18 final size:18
Alignment explanation
Indices: 50272806--50272840 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
50272796 TTAATATATA
50272806 TATAGGTTATAAAATAAT
1 TATAGGTTATAAAATAAT
50272824 TATA-GTTATAATAATAA
1 TATAGGTTATAA-AATAA
50272841 ATACAAAAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (18 bp):
TATAGGTTATAAAATAAT
Found at i:50272895 original size:18 final size:19
Alignment explanation
Indices: 50272874--50272910 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
50272864 CATGCAATTT
*
50272874 AGAAATAAAAGA-AAAGAA
1 AGAAAGAAAAGAGAAAGAA
50272892 AGAAAGAAAAGAGAAAGAA
1 AGAAAGAAAAGAGAAAGAA
50272911 GAACGCACGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.03
Consensus pattern (19 bp):
AGAAAGAAAAGAGAAAGAA
Found at i:50274921 original size:34 final size:34
Alignment explanation
Indices: 50274878--50274945 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
50274868 AGAAAAGAAG
50274878 AAAACTTTGTTGTCTTTACAATTTGATCCTTCTA
1 AAAACTTTGTTGTCTTTACAATTTGATCCTTCTA
50274912 AAAACTTTGTTGTCTTTACAATTTGATCCTTCTA
1 AAAACTTTGTTGTCTTTACAATTTGATCCTTCTA
50274946 CCTCAAATCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.26, C:0.18, G:0.09, T:0.47
Consensus pattern (34 bp):
AAAACTTTGTTGTCTTTACAATTTGATCCTTCTA
Found at i:50277787 original size:16 final size:16
Alignment explanation
Indices: 50277746--50277781 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
50277736 GTCTTATTTC
*
50277746 ATTTTTAT-TTGTTTT
1 ATTTTTATCTTTTTTT
50277761 ATTTTTATCTTTTTTT
1 ATTTTTATCTTTTTTT
50277777 ATTTT
1 ATTTT
50277782 ATTCTTGTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.81
Consensus pattern (16 bp):
ATTTTTATCTTTTTTT
Found at i:50281060 original size:30 final size:30
Alignment explanation
Indices: 50281002--50281060 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
50280992 ATTTTTGGGC
* **
50281002 CTAGGGGTAAAATGATCATTTTGTCAAAGT
1 CTAGGGGCAAAATGATCATTTTACCAAAGT
*
50281032 CTAGGGGCAAAATGGTCATTTTACCAAAG
1 CTAGGGGCAAAATGATCATTTTACCAAAG
50281061 ATATGAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.29
Consensus pattern (30 bp):
CTAGGGGCAAAATGATCATTTTACCAAAGT
Found at i:50281541 original size:46 final size:45
Alignment explanation
Indices: 50281389--50281610 Score: 211
Period size: 46 Copynumber: 4.8 Consensus size: 45
50281379 TCATTTGTGT
* * *
50281389 GAGCTAGTGTAAGACATGTCTGGGACATGCGTCGGCT-GCATTACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCG-A-GACGA
* *
50281435 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TCGAGACGA
* * * *
50281483 GTGCTAGTGTAAGACATGTCTGGGACATGCTTCGGCCTCGAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTCGAGACG-A
50281530 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-A--A
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCT-CGAGACGA
* *
50281572 TGTGTCAGTGTAAGACTATGTCTGGGACATGGCATCGGC
1 -GAGCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC
50281611 ATAGATATGC
Statistics
Matches: 150, Mismatches: 15, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
42 1 0.01
44 12 0.08
45 16 0.11
46 67 0.45
47 28 0.19
48 23 0.15
49 2 0.01
50 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGACGA
Found at i:50297515 original size:39 final size:39
Alignment explanation
Indices: 50297467--50297633 Score: 289
Period size: 39 Copynumber: 4.3 Consensus size: 39
50297457 TGGGACTTTA
50297467 AGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTT
1 AGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTT
* *
50297506 AGCCCGGATATAATGCCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTT
**
50297545 AGCCCGGATATAGCACCAGCACGAATGCCTTCAGGACTT
1 AGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTT
*
50297584 AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTT
50297623 AGCCCGGATAT
1 AGCCCGGATAT
50297634 TTTCCAGCAC
Statistics
Matches: 119, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 119 1.00
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (39 bp):
AGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTT
Found at i:50297716 original size:39 final size:39
Alignment explanation
Indices: 50297626--50297717 Score: 125
Period size: 39 Copynumber: 2.4 Consensus size: 39
50297616 GGGACTTAGC
* * *
50297626 CCGGATA-TTTTCCAGCACTTAGCCTGCGGCCTTTAAGT
1 CCGGATATTTTTCCAGCACTAAGCCTGCGGACTTCAAGT
*
50297664 CCGGATATATTTCCAGCA-TAAAGCCTGCGGACTTCAAGT
1 CCGGATATTTTTCCAGCACT-AAGCCTGCGGACTTCAAGT
50297703 CCGGATATTTTTCCA
1 CCGGATATTTTTCCA
50297718 ATACCATGCA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
38 8 0.17
39 39 0.83
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCACTAAGCCTGCGGACTTCAAGT
Found at i:50303416 original size:39 final size:39
Alignment explanation
Indices: 50303368--50303534 Score: 289
Period size: 39 Copynumber: 4.3 Consensus size: 39
50303358 TGGGACTTTA
50303368 AGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTT
1 AGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTT
* *
50303407 AGCCCGGATATAATGCCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTT
**
50303446 AGCCCGGATATAGCACCAGCACGAATGCCTTCAGGACTT
1 AGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTT
*
50303485 AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTT
50303524 AGCCCGGATAT
1 AGCCCGGATAT
50303535 TTTTCCAGCA
Statistics
Matches: 119, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 119 1.00
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (39 bp):
AGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTT
Found at i:50303571 original size:39 final size:39
Alignment explanation
Indices: 50303528--50303619 Score: 123
Period size: 39 Copynumber: 2.4 Consensus size: 39
50303518 GGACTTAGCC
* * *
50303528 CGGATATTTTTCCAGCACT-TAGCCTGTGGACTTTAAGTA
1 CGGATATTTTTCCAGCA-TAAAGCCTGCGGACTTCAAGTA
* *
50303567 CGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTC
1 CGGATATTTTTCCAGCATAAAGCCTGCGGACTTCAAGTA
50303606 CGGATATTTTTCCA
1 CGGATATTTTTCCA
50303620 ATACCATGCA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 1 0.02
39 45 0.98
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (39 bp):
CGGATATTTTTCCAGCATAAAGCCTGCGGACTTCAAGTA
Found at i:50316386 original size:15 final size:14
Alignment explanation
Indices: 50316355--50316398 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
50316345 CGAGTGTTGA
*
50316355 TGAAAAAGAAATGAG
1 TGAAAAAGAAA-AAG
50316370 TGAAAAAGAAGAAAG
1 TGAAAAAGAA-AAAG
*
50316385 TGAACAAGAAAAAG
1 TGAAAAAGAAAAAG
50316399 CGAGGAGTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 4 0.15
15 21 0.81
16 1 0.04
ACGTcount: A:0.64, C:0.02, G:0.25, T:0.09
Consensus pattern (14 bp):
TGAAAAAGAAAAAG
Found at i:50318081 original size:50 final size:52
Alignment explanation
Indices: 50318024--50318141 Score: 168
Period size: 50 Copynumber: 2.3 Consensus size: 52
50318014 TAATAAAGTT
* *
50318024 ATGCATTATGTAACTCTCATGTAAGTT-AAGTTTGCATCA-TAAATTATGAC
1 ATGCATTATGTAACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTAAGAC
* * *
50318074 ATGCATTATGAAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTAAGTC
1 ATGCATTATGTAACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTAAGAC
*
50318126 ATGCATTAAGTAACTC
1 ATGCATTATGTAACTC
50318142 ATTTGTTCAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 24 0.41
51 12 0.20
52 23 0.39
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (52 bp):
ATGCATTATGTAACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTAAGAC
Found at i:50318141 original size:52 final size:51
Alignment explanation
Indices: 50318010--50318141 Score: 167
Period size: 50 Copynumber: 2.6 Consensus size: 51
50318000 ATGTGTTCTG
* * * *
50318010 CATTTAATAAAGTTATGCATTATGTAACTCTCATGTAAGTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATGTAAGTTAAGTTTGCAT
* * * *
50318061 CA-TAAATTATGACATGCATTATGAAACTCCCATGTTAGTTAAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATGTAAGTT-AAGTTTGCAT
*
50318112 CATTAAATTAAGTCATGCATTAAGTAACTC
1 CATTAAATTAAGTCATGCATTATGTAACTC
50318142 ATTTGTTCAT
Statistics
Matches: 67, Mismatches: 12, Indels: 3
0.82 0.15 0.04
Matches are distributed among these distances:
50 30 0.45
51 14 0.21
52 23 0.34
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (51 bp):
CATTAAATTAAGTCATGCATTATGTAACTCCCATGTAAGTTAAGTTTGCAT
Found at i:50320077 original size:17 final size:16
Alignment explanation
Indices: 50320035--50320083 Score: 53
Period size: 17 Copynumber: 3.0 Consensus size: 16
50320025 AGAAATTAAG
*
50320035 AGAAGTAAAAAAGAAA
1 AGAAATAAAAAAGAAA
* * *
50320051 TGATAGAAAAAAGTAAA
1 AGAAATAAAAAAG-AAA
50320068 AGAAATAAAAAAGAAA
1 AGAAATAAAAAAGAAA
50320084 GTGTATGAGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
16 12 0.48
17 13 0.52
ACGTcount: A:0.73, C:0.00, G:0.16, T:0.10
Consensus pattern (16 bp):
AGAAATAAAAAAGAAA
Found at i:50321832 original size:50 final size:52
Alignment explanation
Indices: 50321768--50321866 Score: 157
Period size: 50 Copynumber: 1.9 Consensus size: 52
50321758 TTAATAAAGT
* *
50321768 CATGTATTATGTAACTCTCATGTTAGTT-AAGTTTGCATCA-TAAATTATGA
1 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTATGA
*
50321818 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATTATTAAATTA
1 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTA
50321867 AGTCATACAT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 26 0.59
51 11 0.25
52 7 0.16
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.41
Consensus pattern (52 bp):
CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTATGA
Found at i:50321886 original size:52 final size:50
Alignment explanation
Indices: 50321780--50321886 Score: 133
Period size: 52 Copynumber: 2.1 Consensus size: 50
50321770 TGTATTATGT
* * * * *
50321780 AACTCTCATGTTAGTTAAGTTTGCATCATAAATTATGACATGCATTATGT
1 AACTCCCATGTTAGTTAAGTTTGCATCATAAATTAAGACATACATTAAGG
* *
50321830 AACTCCCATGTTAGTTAAAGTTTGCATTATTAAATTAAGTCATACATTAAGG
1 AACTCCCATGTTAGTT-AAGTTTGCATCA-TAAATTAAGACATACATTAAGG
50321882 AACTC
1 AACTC
50321887 ATTTTTTCAT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 15 0.31
51 11 0.23
52 22 0.46
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (50 bp):
AACTCCCATGTTAGTTAAGTTTGCATCATAAATTAAGACATACATTAAGG
Found at i:50324663 original size:17 final size:16
Alignment explanation
Indices: 50324625--50324671 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
50324615 AATATAAAAA
50324625 AAGT-AAAAAAAATCG
1 AAGTGAAAAAAAATCG
* *
50324640 AAGTGAAAAAAATTTG
1 AAGTGAAAAAAAATCG
50324656 AAGTTGAACAAAAAAT
1 AAG-TGAA-AAAAAAT
50324672 TGTAAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 4 0.15
16 12 0.46
17 4 0.15
18 6 0.23
ACGTcount: A:0.62, C:0.04, G:0.15, T:0.19
Consensus pattern (16 bp):
AAGTGAAAAAAAATCG
Found at i:50332423 original size:30 final size:29
Alignment explanation
Indices: 50332375--50332431 Score: 69
Period size: 30 Copynumber: 1.9 Consensus size: 29
50332365 TTTACGAGCG
* *
50332375 TAGGGGCCAAAGTGCAAATATGTGAAAATT
1 TAGGGGCCAAAATACAAATATGT-AAAATT
* *
50332405 TAGGGGTCAAAATACAAATTTGTAAAA
1 TAGGGGCCAAAATACAAATATGTAAAA
50332432 GTATGATTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 4 0.17
30 19 0.83
ACGTcount: A:0.44, C:0.09, G:0.23, T:0.25
Consensus pattern (29 bp):
TAGGGGCCAAAATACAAATATGTAAAATT
Found at i:50332690 original size:18 final size:20
Alignment explanation
Indices: 50332654--50332700 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
50332644 AGTTGTAAGT
50332654 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
50332674 ATAT-TATGTGACTATTTTG
1 ATATATATGTGAATAATTTG
50332693 ATGATATA
1 AT-ATATA
50332701 ACATGTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:50333180 original size:51 final size:50
Alignment explanation
Indices: 50333051--50333428 Score: 168
Period size: 50 Copynumber: 7.8 Consensus size: 50
50333041 TCGTTGTGAG
* * * *
50333051 TCACATGTGTAGTACTAAGTGCCGGCTACTATGTGTACCAGATTGATAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTAATAGA
* * * * *
50333101 TCGCATGTGTAGTACTAAATGCAAGCTACTATGCGTACCCG-TTAACTTTGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTAA--TAGA
* * ** * *
50333152 TCACATATGTAGTACTAAGTGTAGGCTACTATTTGTATC--A--AAT-GG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTAATAGA
* * * * * * * *
50333197 TTA-A-GT-CA-CACTAAGTGCAGGCTACTACGTGCACCAGATTGATAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTAATAGA
* * *
50333243 TCGCATGTGTAGTACTAAGTCCAGGCTACTATGCGTA-CACG-TTAACTTTGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA-GATTAA--TAGA
* * * *** * *
50333294 TCACGTGTGTAGTACAAAGTGGAGGCTACTACATGTATCAGATGGTTA-AG-
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT--TAATAGA
* * * * * *
50333344 TCACGTGTGTAGTACTAAGTGTAGG-------GTGTACCAGGTTGATAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTAATAGA
* *
50333387 TCGCATGTGTAGTATTAAGTGCAGGCTACTATGCGTACCAGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
50333429 GAGCTTCGGT
Statistics
Matches: 239, Mismatches: 61, Indels: 56
0.67 0.17 0.16
Matches are distributed among these distances:
41 23 0.10
42 3 0.01
43 31 0.13
44 1 0.00
45 5 0.02
46 4 0.02
47 1 0.00
48 4 0.02
49 9 0.04
50 87 0.36
51 66 0.28
52 3 0.01
54 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTAATAGA
Found at i:50333320 original size:142 final size:142
Alignment explanation
Indices: 50333064--50333424 Score: 467
Period size: 142 Copynumber: 2.5 Consensus size: 142
50333054 CATGTGTAGT
* * * *
50333064 ACTAAGTGCCGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAATGCAAGCTA
1 ACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTA
* * * **
50333129 CTATGCGTACCCGTTAACTTTGATCACATATGTAGTACTAAGTGTAGGCTACTATTTGTATCAAA
66 CTATGCGTACACGTTAACTTTGATCACATATGTAGTACAAAGTGGAGGCTACTACATGTATCAAA
50333194 TGGTTAAGTCAC
131 TGGTTAAGTCAC
* *
50333206 ACTAAGTGCAGGCTACTACGTGCACCAGATTGATAGGTCGCATGTGTAGTACTAAGTCCAGGCTA
1 ACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTA
* * *
50333271 CTATGCGTACACGTTAACTTTGATCACGTGTGTAGTACAAAGTGGAGGCTACTACATGTATCAGA
66 CTATGCGTACACGTTAACTTTGATCACATATGTAGTACAAAGTGGAGGCTACTACATGTATCAAA
50333336 TGGTTAAGTCAC
131 TGGTTAAGTCAC
* * * * * * *
50333348 -GT--GTGTAGTACTAAGTGTAGGGTGTACCAGGTTGATAGGTCGCATGTGTAGTATTAAGTGCA
1 ACTAAGTGCAG-GCT-A--CTA-CGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCA
50333410 GGCTACTATGCGTAC
61 GGCTACTATGCGTAC
50333425 CAGAGAGCTT
Statistics
Matches: 191, Mismatches: 23, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
139 5 0.03
140 2 0.01
141 2 0.01
142 128 0.67
143 2 0.01
144 52 0.27
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (142 bp):
ACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTA
CTATGCGTACACGTTAACTTTGATCACATATGTAGTACAAAGTGGAGGCTACTACATGTATCAAA
TGGTTAAGTCAC
Done.