Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 151 of 344
Found at i:50334804 original size:15 final size:15
Alignment explanation
Indices: 50334784--50334822 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
50334774 TATAATATTG
*
50334784 TATCTTGGATTTCCT
1 TATCTTGGATTTCCC
50334799 TATCTTGGATTTCCC
1 TATCTTGGATTTCCC
50334814 TATCTTGGA
1 TATCTTGGA
50334823 GATCCTAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.15, C:0.21, G:0.15, T:0.49
Consensus pattern (15 bp):
TATCTTGGATTTCCC
Found at i:50335123 original size:40 final size:40
Alignment explanation
Indices: 50335066--50335250 Score: 127
Period size: 41 Copynumber: 4.5 Consensus size: 40
50335056 ACAAAAATTG
* * * *
50335066 TAAAACACAGAGCAATAGCGGCGTTTTTGGTAAAACGCTGC
1 TAAAA-ACAGAGAAATAGCGGCGTTTTAGATAAAACGCCGC
* * * * *
50335107 TAAAAACAGATAAATAGCTGTGTTTTAGCAAAAAACACCGC
1 TAAAAACAGAGAAATAGCGGCGTTTTAG-ATAAAACGCCGC
* * * *
50335148 TAAAAATAGAGCAATAGCGGCGCTTTCGATAAAACGCCGC
1 TAAAAACAGAGAAATAGCGGCGTTTTAGATAAAACGCCGC
* * * * * * **
50335188 TAAAAACTAGAGCATTAGCAGCGCTTTCGGTAAAACGCCAT
1 TAAAAAC-AGAGAAATAGCGGCGTTTTAGATAAAACGCCGC
* *
50335229 TAAAAACCAGAGCATTAGCGGC
1 TAAAAA-CAGAGAAATAGCGGC
50335251 ACTTTCTGTA
Statistics
Matches: 116, Mismatches: 25, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
40 34 0.29
41 81 0.70
42 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.20
Consensus pattern (40 bp):
TAAAAACAGAGAAATAGCGGCGTTTTAGATAAAACGCCGC
Found at i:50335215 original size:41 final size:41
Alignment explanation
Indices: 50335138--50335315 Score: 216
Period size: 41 Copynumber: 4.4 Consensus size: 41
50335128 GTTTTAGCAA
* * * *
50335138 AAAACACCGCTAAAAA-TAGAGCAATAGCGGCGCTTTC-GAT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCACTTTCTG-T
* * * *
50335178 AAAACGCCGCTAAAAACTAGAGCATTAGCAGCGCTTTCGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCACTTTCTGT
**
50335219 AAAACGCCATTAAAAACCAGAGCATTAGCGGCACTTTCTGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCACTTTCTGT
**
50335260 AAAACGCCATTAAAAACCAGAGCATTAGCGGCACTTTCTGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCACTTTCTGT
*
50335301 AAAATGCCGCTAAAA
1 AAAACGCCGCTAAAA
50335316 GTCATATAAC
Statistics
Matches: 124, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
40 15 0.12
41 108 0.87
42 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCACTTTCTGT
Found at i:50335418 original size:16 final size:16
Alignment explanation
Indices: 50335373--50335418 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
50335363 TCTATATAAC
*
50335373 CCCTAAAACACT-AAAC
1 CCCT-AAACACTAAAAA
50335389 CCCTAAAC-CTTAAAAA
1 CCCTAAACAC-TAAAAA
50335405 CCCTAAACACTAAA
1 CCCTAAACACTAAA
50335419 CTATAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 1 0.04
15 5 0.19
16 19 0.73
17 1 0.04
ACGTcount: A:0.50, C:0.35, G:0.00, T:0.15
Consensus pattern (16 bp):
CCCTAAACACTAAAAA
Found at i:50335684 original size:21 final size:21
Alignment explanation
Indices: 50335646--50335702 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
50335636 GGATTATGAT
* *
50335646 TTAAGAGTT-GGGGTTTAAGGT
1 TTAAGGGTTAGGGG-TTAAGGG
* *
50335667 TTAGGGGTTATGGGTTAAGGG
1 TTAAGGGTTAGGGGTTAAGGG
50335688 TTAAGGGTTAGGGGT
1 TTAAGGGTTAGGGGT
50335703 CTAGGATTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
21 26 0.90
22 3 0.10
ACGTcount: A:0.21, C:0.00, G:0.44, T:0.35
Consensus pattern (21 bp):
TTAAGGGTTAGGGGTTAAGGG
Found at i:50335712 original size:21 final size:21
Alignment explanation
Indices: 50335646--50335713 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
50335636 GGATTATGAT
* *
50335646 TTAAGAGTT-GGGGTTTAAGGT
1 TTAAGGGTTAGGGG-TTAAGGA
* * *
50335667 TTAGGGGTTATGGGTTAAGGG
1 TTAAGGGTTAGGGGTTAAGGA
50335688 TTAAGGGTTAGGGGTCT-AGGA
1 TTAAGGGTTAGGGGT-TAAGGA
50335709 TTAAG
1 TTAAG
50335714 AGTTTATGTT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 34 0.89
22 4 0.11
ACGTcount: A:0.24, C:0.01, G:0.41, T:0.34
Consensus pattern (21 bp):
TTAAGGGTTAGGGGTTAAGGA
Found at i:50335728 original size:21 final size:21
Alignment explanation
Indices: 50335704--50335756 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
50335694 GTTAGGGGTC
*
50335704 TAGGATTAAGAGTTTATGTTT
1 TAGGATTAAGAGTTTATGATT
* *
50335725 TAGGATTTAGGGTTTATGATT
1 TAGGATTAAGAGTTTATGATT
50335746 TAGGGATTAAG
1 TA-GGATTAAG
50335757 GATTGGAGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 20 0.74
22 7 0.26
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.43
Consensus pattern (21 bp):
TAGGATTAAGAGTTTATGATT
Found at i:50335774 original size:7 final size:7
Alignment explanation
Indices: 50335656--50335776 Score: 57
Period size: 7 Copynumber: 17.1 Consensus size: 7
50335646 TTAAGAGTTG
50335656 GGGTTTA
1 GGGTTTA
*
50335663 AGGTTTA
1 GGGTTTA
*
50335670 GGGGTTA
1 GGGTTTA
*
50335677 TGGGTTAA
1 -GGGTTTA
*
50335685 GGGTTAA
1 GGGTTTA
50335692 GGG-TTA
1 GGGTTTA
*
50335698 GGGGTCTA
1 -GGGTTTA
* *
50335706 GGATTAA
1 GGGTTTA
*
50335713 GAGTTTA
1 GGGTTTA
* *
50335720 TGTTTTA
1 GGGTTTA
*
50335727 GGATTTA
1 GGGTTTA
50335734 GGGTTTA
1 GGGTTTA
* *
50335741 TGATTTA
1 GGGTTTA
*
50335748 GGGATTA
1 GGGTTTA
* *
50335755 AGGATT-
1 GGGTTTA
50335761 GGAGTTTA
1 GG-GTTTA
50335769 GGGTTTA
1 GGGTTTA
50335776 G
1 G
50335777 TTAATTAGTG
Statistics
Matches: 82, Mismatches: 27, Indels: 10
0.69 0.23 0.08
Matches are distributed among these distances:
6 3 0.04
7 70 0.85
8 9 0.11
ACGTcount: A:0.23, C:0.01, G:0.37, T:0.39
Consensus pattern (7 bp):
GGGTTTA
Found at i:50335922 original size:21 final size:20
Alignment explanation
Indices: 50335898--50335980 Score: 62
Period size: 21 Copynumber: 3.9 Consensus size: 20
50335888 ATTTAGGATA
50335898 TATGGTTAAGGGTTTAAGGTT
1 TATGGTTAA-GGTTTAAGGTT
*
50335919 TATGAGTTACTA-TTTTAAGGTT
1 TATG-GTTA--AGGTTTAAGGTT
*
50335941 TATGGATTATA-GTTTAAGGGT
1 TATGG-TTA-AGGTTTAAGGTT
*
50335962 TAGGGTTTAAGGTTTAAGG
1 TATGG-TTAAGGTTTAAGG
50335981 GTTAGGGGTT
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
20 1 0.02
21 30 0.58
22 20 0.38
24 1 0.02
ACGTcount: A:0.27, C:0.01, G:0.29, T:0.43
Consensus pattern (20 bp):
TATGGTTAAGGTTTAAGGTT
Found at i:50335981 original size:21 final size:21
Alignment explanation
Indices: 50335952--50336020 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
50335942 ATGGATTATA
*
50335952 GTTTAAGGGTTAGGGTTTAAG
1 GTTTAAGGGTTAGGGGTTAAG
*
50335973 GTTTAAGGGTTAGGGGTTATG
1 GTTTAAGGGTTAGGGGTTAAG
* * **
50335994 GGTTCAGGGTTAATGGTTAATG
1 GTTTAAGGGTTAGGGGTTAA-G
50336016 GTTTA
1 GTTTA
50336021 TATTTTAGGA
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
21 34 0.89
22 4 0.11
ACGTcount: A:0.22, C:0.01, G:0.38, T:0.39
Consensus pattern (21 bp):
GTTTAAGGGTTAGGGGTTAAG
Found at i:50336368 original size:19 final size:21
Alignment explanation
Indices: 50336328--50336373 Score: 69
Period size: 19 Copynumber: 2.3 Consensus size: 21
50336318 ATATTAGATT
*
50336328 TAAAAAATATTGATAAATAAA
1 TAAAAAATATTGATAAACAAA
50336349 TAAAAAA-ATTGAT-AACAAA
1 TAAAAAATATTGATAAACAAA
50336368 TAAAAA
1 TAAAAA
50336374 TGAAATACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 11 0.46
20 6 0.25
21 7 0.29
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.24
Consensus pattern (21 bp):
TAAAAAATATTGATAAACAAA
Found at i:50336387 original size:19 final size:19
Alignment explanation
Indices: 50336365--50336404 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
50336355 AATTGATAAC
*
50336365 AAATAAAAATGAAATACAA
1 AAATAAAAATAAAATACAA
*
50336384 AAATAAAAATAAAATATAA
1 AAATAAAAATAAAATACAA
50336403 AA
1 AA
50336405 TAGAGATTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.17
Consensus pattern (19 bp):
AAATAAAAATAAAATACAA
Found at i:50341425 original size:15 final size:16
Alignment explanation
Indices: 50341405--50341435 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
50341395 GTTTTTGTCT
50341405 TATATATGAT-TAAAA
1 TATATATGATCTAAAA
50341420 TATATATGATCTAAAA
1 TATATATGATCTAAAA
50341436 GCAAGAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (16 bp):
TATATATGATCTAAAA
Found at i:50342961 original size:43 final size:43
Alignment explanation
Indices: 50342890--50343045 Score: 141
Period size: 43 Copynumber: 3.6 Consensus size: 43
50342880 AATAATATTT
* * * *
50342890 TAAAGGTTATGATTTTTAGCGACATTTGTGAGAAAAGTGCCGC
1 TAAAGGTCAAGATTTTTAGCGGCGTTTGTGAGAAAAGTGCCGC
* * * * * *
50342933 TAAATGTCAAGATTTTTAGTGGCGTTTGTGGGAAAAGCGTCAC
1 TAAAGGTCAAGATTTTTAGCGGCGTTTGTGAGAAAAGTGCCGC
* * * *
50342976 TAAAGGTCATGCTCTTTAGCGGCGTTTGTGAAAAAAGTGCCGC
1 TAAAGGTCAAGATTTTTAGCGGCGTTTGTGAGAAAAGTGCCGC
** * * *
50343019 TAAAATTCATGGTCTTTAGCGGCGTTT
1 TAAAGGTCAAGATTTTTAGCGGCGTTT
50343046 TTTTAAAAAA
Statistics
Matches: 90, Mismatches: 23, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
43 90 1.00
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (43 bp):
TAAAGGTCAAGATTTTTAGCGGCGTTTGTGAGAAAAGTGCCGC
Found at i:50344990 original size:38 final size:38
Alignment explanation
Indices: 50344875--50344992 Score: 112
Period size: 39 Copynumber: 3.0 Consensus size: 38
50344865 TCCAATTTCT
* * **
50344875 AGCACAAAGCCTACGGGATTTAACCCGGATATCTCTTACC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATA--TAATACC
* * * *
50344915 AGCACTAGGCCTG-TGGACTATAAGTCCGGATATAATACC
1 AGCACTAAGCCTGCGGGA-TTTAA-CCCGGATATAATACC
*
50344954 AGCATTAAGCCTGCGGGATTTAACCCGGATATAATACC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATATAATACC
50344992 A
1 A
50344993 CATAAATTTT
Statistics
Matches: 62, Mismatches: 13, Indels: 8
0.75 0.16 0.10
Matches are distributed among these distances:
38 15 0.24
39 23 0.37
40 17 0.27
41 7 0.11
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.23
Consensus pattern (38 bp):
AGCACTAAGCCTGCGGGATTTAACCCGGATATAATACC
Found at i:50353161 original size:40 final size:39
Alignment explanation
Indices: 50353117--50353227 Score: 106
Period size: 39 Copynumber: 2.9 Consensus size: 39
50353107 GCACAAAGCT
*
50353117 TGCGGGATTTAACCCGGATATCTATTACCAGCACTAG-GCC
1 TGCGGGATTTAACCCGGATAT-TAATACCAGCA-TAGAGCC
* * * *
50353157 TGC-GGACTATAAGTCCGGATA-TAATATCAGCATTGAGCC
1 TGCGGGA-TTTAA-CCCGGATATTAATACCAGCATAGAGCC
50353196 TGCGGGATTTAACCCGGATA-TAATACCA-CATA
1 TGCGGGATTTAACCCGGATATTAATACCAGCATA
50353228 AATTTTGCCT
Statistics
Matches: 58, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
37 3 0.05
38 16 0.28
39 22 0.38
40 10 0.17
41 7 0.12
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (39 bp):
TGCGGGATTTAACCCGGATATTAATACCAGCATAGAGCC
Found at i:50359803 original size:40 final size:41
Alignment explanation
Indices: 50359759--50360019 Score: 318
Period size: 39 Copynumber: 6.6 Consensus size: 41
50359749 GCTCCTCGTT
* *
50359759 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
50359799 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
50359839 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
50359878 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
50359917 CAAATGCCTTCGGG--TTAGCCCGGAATTAG-AATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
50359955 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
50359996 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50360020 CATCATTCAA
Statistics
Matches: 202, Mismatches: 8, Indels: 23
0.87 0.03 0.10
Matches are distributed among these distances:
37 2 0.01
38 35 0.17
39 90 0.45
40 64 0.32
41 11 0.05
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:50369138 original size:40 final size:39
Alignment explanation
Indices: 50369094--50369204 Score: 106
Period size: 39 Copynumber: 2.9 Consensus size: 39
50369084 GCACAAAGCT
*
50369094 TGCGGGATTTAACCCGGATATCTATTACCAGCACTAG-GCC
1 TGCGGGATTTAACCCGGATAT-TAATACCAGCA-TAGAGCC
* * * *
50369134 TGC-GGACTATAAGTCCGGATA-TAATATCAGCATTGAGCC
1 TGCGGGA-TTTAA-CCCGGATATTAATACCAGCATAGAGCC
50369173 TGCGGGATTTAACCCGGATA-TAATACCA-CATA
1 TGCGGGATTTAACCCGGATATTAATACCAGCATA
50369205 AATTTTGCCT
Statistics
Matches: 58, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
37 3 0.05
38 16 0.28
39 22 0.38
40 10 0.17
41 7 0.12
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (39 bp):
TGCGGGATTTAACCCGGATATTAATACCAGCATAGAGCC
Found at i:50375795 original size:40 final size:41
Alignment explanation
Indices: 50375751--50376012 Score: 318
Period size: 39 Copynumber: 6.6 Consensus size: 41
50375741 GCTCCTCGTT
* *
50375751 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
50375791 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
50375831 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
50375870 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
*
50375909 CAAATGCCTTCGGG-TTTAGCCCGGAATTAG-AATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
50375948 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
50375989 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50376013 CATCATTCAA
Statistics
Matches: 202, Mismatches: 10, Indels: 21
0.87 0.04 0.09
Matches are distributed among these distances:
38 3 0.01
39 124 0.61
40 64 0.32
41 11 0.05
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:50381805 original size:50 final size:50
Alignment explanation
Indices: 50381722--50382152 Score: 402
Period size: 50 Copynumber: 8.6 Consensus size: 50
50381712 ATCCGTTGTG
50381722 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
* * * * * * * *
50381772 AGCCACGTCTGTGGTACTAAGTGCAGACCACTACGTGTACCAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
* * * * * **
50381822 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTAT-ACGTTAACTT-
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-GAT-GGTTA
*
50381872 TGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
1 AG-TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
* * * * * * * *
50381923 AGCCACGTCTGTGGTACTAAGTGCAGACCACTACGTGTACCAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
* * * * * **
50381973 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTAT-ACGTTAACTT-
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-GAT-GGTTA
*
50382023 TGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
1 AG-TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
* * * * * *
50382074 AGTCACATGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
* * * *
50382124 GGTCGCATGTGTAGTACTAAGTGTAGGCT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCT
50382153 CTTATGCTTA
Statistics
Matches: 303, Mismatches: 68, Indels: 20
0.77 0.17 0.05
Matches are distributed among these distances:
49 2 0.01
50 221 0.73
51 78 0.26
52 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
Found at i:50381917 original size:101 final size:99
Alignment explanation
Indices: 50381723--50382152 Score: 371
Period size: 101 Copynumber: 4.3 Consensus size: 99
50381713 TCCGTTGTGA
* * ** * * * * *
50381723 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGCCACGTCTGTGGTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGTTAATTGA-TCACATGTGTAGTA
* *
50381788 CTAAGTGCAGACCACTACGTGTACCAGATTGATAG
65 CTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * *
50381823 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTAT-ACGTTAACTTTGATCACGTGTGTAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-GTTAA--TTGATCACATGTGTAG
* * * *
50381887 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAA
63 TACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * * * * * * *
50381924 GCCACGTCTGTGGTACTAAGTGCAGACCACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAG-TTAATTGATCACATGTGTAGTA
* * * *
50381989 CTAAGTGCAGGCTACTATGTGTA-TACG-TTAACTTTG
65 CTAAGTGCAGGCTACTACGTGTACCA-GATTGA--TAG
* * * ** *
50382025 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACATGTGTAGTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGTTAATTGA-TCACATGTGTAGTA
* *
50382090 CTAAGTGTAGGCTACTACATGTACCAGATTGATAG
65 CTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* *
50382125 GTCGCATGTGTAGTACTAAGTGTAGGCT
1 GTCACATGTGTAGTACTAAGTGCAGGCT
50382153 CTTATGCTTA
Statistics
Matches: 259, Mismatches: 60, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
99 3 0.01
100 104 0.40
101 141 0.54
102 11 0.04
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (99 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGTTAATTGATCACATGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACCAGATTGATAG
Found at i:50381998 original size:151 final size:151
Alignment explanation
Indices: 50381724--50382152 Score: 777
Period size: 151 Copynumber: 2.8 Consensus size: 151
50381714 CCGTTGTGAG
50381724 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGCCACGTCTGTGGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGCCACGTCTGTGGTAC
50381789 TAAGTGCAGACCACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
66 TAAGTGCAGACCACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
50381854 ATGTGTATACGTTAACTTTGA
131 ATGTGTATACGTTAACTTTGA
50381875 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGCCACGTCTGTGGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGCCACGTCTGTGGTAC
50381940 TAAGTGCAGACCACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
66 TAAGTGCAGACCACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
50382005 ATGTGTATACGTTAACTTTGA
131 ATGTGTATACGTTAACTTTGA
* * * *
50382026 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGCCACGTCTGTGGTAC
* * * * *
50382091 TAAGTGTAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGTAGGCT
66 TAAGTGCAGACCACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCT
50382153 CTTATGCTTA
Statistics
Matches: 269, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
151 269 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (151 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGCCACGTCTGTGGTAC
TAAGTGCAGACCACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
ATGTGTATACGTTAACTTTGA
Found at i:50382388 original size:16 final size:16
Alignment explanation
Indices: 50382367--50382398 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
50382357 AGAATGGAGT
50382367 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
50382383 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
50382399 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:50383590 original size:13 final size:13
Alignment explanation
Indices: 50383572--50383596 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50383562 AAATTGATGT
50383572 TATAATGTGTGTC
1 TATAATGTGTGTC
50383585 TATAATGTGTGT
1 TATAATGTGTGT
50383597 AAGTATGGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.04, G:0.24, T:0.48
Consensus pattern (13 bp):
TATAATGTGTGTC
Found at i:50385153 original size:34 final size:34
Alignment explanation
Indices: 50385089--50385153 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
50385079 CTTAGGCCGT
* * *
50385089 ACTGCTACTGATAATGAAATGGGTTCAGGCCCAG
1 ACTGCTACTGATAATGAAATAGGCTAAGGCCCAG
* *
50385123 ACTGCTACTGTTATTGAAATAGGCTAAGGCC
1 ACTGCTACTGATAATGAAATAGGCTAAGGCC
50385154 TAACTGATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (34 bp):
ACTGCTACTGATAATGAAATAGGCTAAGGCCCAG
Found at i:50387145 original size:8 final size:8
Alignment explanation
Indices: 50387134--50387169 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
50387124 CGAAAAACCC
50387134 GAAAAGCT
1 GAAAAGCT
50387142 GAAAAGCT
1 GAAAAGCT
* *
50387150 GAAATGCC
1 GAAAAGCT
50387158 GAAAAGCT
1 GAAAAGCT
50387166 GAAA
1 GAAA
50387170 GTTGGGCTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.50, C:0.14, G:0.25, T:0.11
Consensus pattern (8 bp):
GAAAAGCT
Found at i:50401126 original size:19 final size:19
Alignment explanation
Indices: 50401082--50401129 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
50401072 AAAATGATAT
*
50401082 TGGGCCT-TTTGGGCCAAA
1 TGGGCCTGTGTGGGCCAAA
* *
50401100 TTGG-CTGTGTGGGCCCAA
1 TGGGCCTGTGTGGGCCAAA
50401118 TGGGCCTGTGTG
1 TGGGCCTGTGTG
50401130 TCTCACACGG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 2 0.08
18 15 0.62
19 7 0.29
ACGTcount: A:0.10, C:0.21, G:0.40, T:0.29
Consensus pattern (19 bp):
TGGGCCTGTGTGGGCCAAA
Found at i:50402989 original size:20 final size:20
Alignment explanation
Indices: 50402939--50402995 Score: 53
Period size: 20 Copynumber: 2.7 Consensus size: 20
50402929 GAAAATGGCA
50402939 AAAAATAAAAGAAATTGAGAG
1 AAAAA-AAAAGAAATTGAGAG
* *
50402960 AAGTAAAAAATAAA-TGAGAG
1 AA-AAAAAAAGAAATTGAGAG
50402980 AAAAAGAAAAGGAAAT
1 AAAAA-AAAA-GAAAT
50402996 AAAAAGAGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
19 2 0.07
20 12 0.43
21 12 0.43
22 2 0.07
ACGTcount: A:0.68, C:0.00, G:0.19, T:0.12
Consensus pattern (20 bp):
AAAAAAAAAGAAATTGAGAG
Found at i:50404862 original size:50 final size:49
Alignment explanation
Indices: 50404732--50404862 Score: 149
Period size: 50 Copynumber: 2.6 Consensus size: 49
50404722 TTTTTTGGAT
* * *
50404732 TTAATAAAGTCATGCATTATGTAACTCTCATGTTAGTTAAGTTTGCATCA
1 TTAATTAAGTCATGCATTATGTAAC-CTCATGTTAGTTAAATTTGCATGA
* *
50404782 -TAATTTATTACATGCATTATGTAACTCTCATGTTAGTTAAATCTTGCATGA
1 TTAATTAAGT-CATGCATTATGTAAC-CTCATGTTAGTTAAAT-TTGCATGA
*
50404833 TTAAATTAAGTCATGCATTAAGTAA-CTCAT
1 TT-AATTAAGTCATGCATTATGTAACCTCAT
50404863 TTGTTCATTT
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
49 6 0.09
50 36 0.52
51 7 0.10
52 14 0.20
53 6 0.09
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (49 bp):
TTAATTAAGTCATGCATTATGTAACCTCATGTTAGTTAAATTTGCATGA
Found at i:50411189 original size:27 final size:26
Alignment explanation
Indices: 50411159--50411284 Score: 135
Period size: 27 Copynumber: 4.7 Consensus size: 26
50411149 AAATTGTACA
50411159 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* * *
50411186 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
50411213 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
* *
50411240 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTT
50411268 GCACTAAGTGTGCGATT
1 GCACTAAGTGTGCGATT
50411285 TGATTGTATA
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
26 2 0.02
27 59 0.70
28 23 0.27
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:50411223 original size:54 final size:54
Alignment explanation
Indices: 50411158--50411284 Score: 152
Period size: 54 Copynumber: 2.3 Consensus size: 54
50411148 TAAATTGTAC
* **
50411158 AGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAAT-GAA-TATG-
1 AGCACTAAGTGTGCGATT-GACCATGCGGCACTAAGTGTGCG-AATCGAACTATGT
* *
50411211 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATGT
1 A-GCACTAAGTGTGCG-ATTGACCATGCGGCACTAAGTGTGCGAATCGAACTATGT
50411267 AGCACTAAGTGTGCGATT
1 AGCACTAAGTGTGCGATT
50411285 TGATTGTATA
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
53 3 0.05
54 39 0.61
55 21 0.33
56 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTGACCATGCGGCACTAAGTGTGCGAATCGAACTATGT
Found at i:50415117 original size:40 final size:40
Alignment explanation
Indices: 50415017--50415281 Score: 272
Period size: 40 Copynumber: 6.7 Consensus size: 40
50415007 GCTCCTCGTT
* * * * *
50415017 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* ** *
50415057 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
*
50415096 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* *
50415136 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCA
*
50415176 CAAATGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCA
** * * *
50415216 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-ATC-TCGCA
*
50415257 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
50415282 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 20, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
39 39 0.20
40 143 0.72
41 16 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
Found at i:50415290 original size:41 final size:41
Alignment explanation
Indices: 50415213--50415290 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
50415203 TTTGTATCTC
* * *
50415213 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
50415254 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
50415291 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:50422261 original size:51 final size:49
Alignment explanation
Indices: 50422217--50422314 Score: 151
Period size: 51 Copynumber: 2.0 Consensus size: 49
50422207 TAATTGCTGA
* *
50422217 AATTATTTAAGCAGCTAAAGAAAATTAAAAAACAACTTAATTAATTAAAAT
1 AATTATTTAAACAACTAAAGAAAATT--AAAACAACTTAATTAATTAAAAT
*
50422268 AATTATTTAAACAACTAAAGACAATTAAAACAACTTAATTAATTAAA
1 AATTATTTAAACAACTAAAGAAAATTAAAACAACTTAATTAATTAAA
50422315 CTAGAATAAC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 21 0.48
51 23 0.52
ACGTcount: A:0.57, C:0.09, G:0.04, T:0.30
Consensus pattern (49 bp):
AATTATTTAAACAACTAAAGAAAATTAAAACAACTTAATTAATTAAAAT
Found at i:50423181 original size:13 final size:13
Alignment explanation
Indices: 50423163--50423188 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50423153 GAAGATAGGA
50423163 ACCTTGACCTGTT
1 ACCTTGACCTGTT
50423176 ACCTTGACCTGTT
1 ACCTTGACCTGTT
50423189 CGAGGTGCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.15, T:0.38
Consensus pattern (13 bp):
ACCTTGACCTGTT
Found at i:50425007 original size:42 final size:43
Alignment explanation
Indices: 50424914--50425039 Score: 168
Period size: 42 Copynumber: 3.0 Consensus size: 43
50424904 AAGTCTGAAC
* * **
50424914 TCAT-TCACCAGCATT-TTGCCTGCTAGGCTTGAAGCCCGATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
*
50424955 TCATTTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGA-A
1 TCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
* *
50424997 TTATCTCACCGACATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
50425040 ATATTATTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
41 4 0.05
42 49 0.65
43 22 0.29
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.25
Consensus pattern (43 bp):
TCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
Found at i:50449487 original size:27 final size:26
Alignment explanation
Indices: 50449439--50449498 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
50449429 GCAAGGCTAC
*
50449439 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
50449466 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
50449492 CAGATAT
1 CAGATAT
50449499 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:50450597 original size:27 final size:27
Alignment explanation
Indices: 50450576--50450724 Score: 145
Period size: 27 Copynumber: 5.4 Consensus size: 27
50450566 ACCCTAATTT
* *
50450576 GTAAAATGACCGTATTACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTATAGG
*
50450603 ATAAAATGACCGTAATACCCCTATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* *
50450630 GTAAAATGACTGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* * * *
50450657 GTAAAACGACCGTATTACCCCTTTCTTCAAG
1 GTAAAATGACCGTAATACCCC--T-AT-AGG
* * **
50450688 GTAAAATGATCGTAATACCCCTGTATT
1 GTAAAATGACCGTAATACCCCTATAGG
50450715 GTAAAATGAC
1 GTAAAATGAC
50450725 AATTATGTCG
Statistics
Matches: 100, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
27 76 0.76
28 1 0.01
29 2 0.02
30 1 0.01
31 20 0.20
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.27
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTATAGG
Found at i:50450649 original size:54 final size:54
Alignment explanation
Indices: 50450576--50450712 Score: 166
Period size: 54 Copynumber: 2.5 Consensus size: 54
50450566 ACCCTAATTT
* *
50450576 GTAAAATGACCGTATTACCCCTGTAGGATAAAATGACCGTAATACCCCTATAGG
1 GTAAAATGACCGTAATACCCCTGTAGGATAAAACGACCGTAATACCCCTATAGG
* * * * *
50450630 GTAAAATGACTGTAATACCCCTGTAGGGTAAAACGACCGTATTACCCCTTTCTTCAAG
1 GTAAAATGACCGTAATACCCCTGTAGGATAAAACGACCGTAATACCCC--T-AT-AGG
*
50450688 GTAAAATGATCGTAATACCCCTGTA
1 GTAAAATGACCGTAATACCCCTGTA
50450713 TTGTAAAATG
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
54 43 0.61
56 1 0.01
57 1 0.01
58 25 0.36
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (54 bp):
GTAAAATGACCGTAATACCCCTGTAGGATAAAACGACCGTAATACCCCTATAGG
Found at i:50451183 original size:33 final size:33
Alignment explanation
Indices: 50451135--50451233 Score: 137
Period size: 33 Copynumber: 3.0 Consensus size: 33
50451125 TTAAGCCTAC
*
50451135 ACTGCTACTGTATAGGGCTAGGGCCCAGATTGT
1 ACTGATACTGTATAGGGCTAGGGCCCAGATTGT
* * *
50451168 ACTGATACTGAATAGGGCTTA-AGCCCAGACTGT
1 ACTGATACTGTATAGGGC-TAGGGCCCAGATTGT
*
50451201 ACTGATACTGTATAGGGCTTGGGCCCAGATTGT
1 ACTGATACTGTATAGGGCTAGGGCCCAGATTGT
50451234 GTTATTCACT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
32 1 0.02
33 53 0.95
34 2 0.04
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (33 bp):
ACTGATACTGTATAGGGCTAGGGCCCAGATTGT
Found at i:50453532 original size:12 final size:12
Alignment explanation
Indices: 50453515--50453539 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50453505 AGTAGTCTCT
50453515 TATTTTGGTTTC
1 TATTTTGGTTTC
50453527 TATTTTGGTTTC
1 TATTTTGGTTTC
50453539 T
1 T
50453540 GGCATTGTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.16, T:0.68
Consensus pattern (12 bp):
TATTTTGGTTTC
Found at i:50455096 original size:27 final size:27
Alignment explanation
Indices: 50455066--50455126 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
50455056 ACCCCAGTTT
*
50455066 GTAAAATAACTGTAATAC-CCGTATAGG
1 GTAAAATAACCGTAATACTCC-TATAGG
* *
50455093 GTAAAATGACCGTAGTACTCCTATAGG
1 GTAAAATAACCGTAATACTCCTATAGG
50455120 GTAAAAT
1 GTAAAAT
50455127 GATCATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 28 0.93
28 2 0.07
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAAAATAACCGTAATACTCCTATAGG
Found at i:50455353 original size:27 final size:27
Alignment explanation
Indices: 50455296--50455373 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 27
50455286 GGAAGTACTG
* * * * *
50455296 TACTGGTGACTATGTCACAATCACTGT
1 TACTGGTGGCTATGCCACAATTACAGA
50455323 TACTGGTGGCTATGCCACAATTACAGA
1 TACTGGTGGCTATGCCACAATTACAGA
* * *
50455350 TACTAGTGGCTTTGCCACATTTAC
1 TACTGGTGGCTATGCCACAATTAC
50455374 TGTTTCTGGC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACAATTACAGA
Found at i:50455614 original size:33 final size:33
Alignment explanation
Indices: 50455566--50455664 Score: 101
Period size: 33 Copynumber: 3.0 Consensus size: 33
50455556 TTAGGCCTAC
* *
50455566 ACTGCTACTGTATAGGGCTAGGGCCCAGACTAT
1 ACTGATACTGAATAGGGCTAGGGCCCAGACTAT
* * *
50455599 ACTGATACTGAATAGGGCTTA-CGCCTAGACTGT
1 ACTGATACTGAATAGGGC-TAGGGCCCAGACTAT
* * * *
50455632 ACTGATATTGAATAAGTCTTGGGCCCAGACTAT
1 ACTGATACTGAATAGGGCTAGGGCCCAGACTAT
50455665 GTTATTCACT
Statistics
Matches: 52, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
32 1 0.02
33 49 0.94
34 2 0.04
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (33 bp):
ACTGATACTGAATAGGGCTAGGGCCCAGACTAT
Found at i:50458887 original size:11 final size:11
Alignment explanation
Indices: 50458871--50458896 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
50458861 AACAAACTAG
50458871 AAAAAAATAAT
1 AAAAAAATAAT
50458882 AAAAAAATAAT
1 AAAAAAATAAT
50458893 AAAA
1 AAAA
50458897 CTAAAGTGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAAAAATAAT
Found at i:50462024 original size:27 final size:26
Alignment explanation
Indices: 50461976--50462035 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
50461966 GCGAGGCTGC
*
50461976 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
50462003 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
50462029 CAGATAT
1 CAGATAT
50462036 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:50462080 original size:71 final size:67
Alignment explanation
Indices: 50462003--50462142 Score: 172
Period size: 67 Copynumber: 2.0 Consensus size: 67
50461993 TCACCAGATA
* * *
50462003 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCAAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCAAAGCCACCAGATTGCAGCGA
50462068 GGCTGC
62 GGCTGC
* * * * *
50462074 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCTACCAGATTGCAGTGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCAAAGCCACCAGATTGCAGCGAGGCT
50462139 GC
66 GC
50462141 CA
1 CA
50462143 CAACGCTTCC
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
67 36 0.59
71 25 0.41
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.20
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCAAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:50462797 original size:27 final size:27
Alignment explanation
Indices: 50462767--50463073 Score: 425
Period size: 27 Copynumber: 11.4 Consensus size: 27
50462757 TACCCCATGA
*
50462767 GGGTATCTCGGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* * *
50462794 GGGTATTTCAGTATTTCTACCCTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
50462821 GGGTATTTCGGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
*
50462848 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* * *
50462875 GGGTATTTCGATAATTCTACCTTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
50462902 GGGTATTTTGGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
50462929 GGGTATTTCGGTAATTCTACCTTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
50462956 GGGTATTTCAGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* * *
50462983 GGGTATTTCAGTAATTCTACCTTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
**
50463010 GGGTATTTTAGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
50463037 GGGTATTTCGGTAATTCTACCTTATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
50463064 GGGTATTTCG
1 GGGTATTTCG
50463074 AAAATTTTAA
Statistics
Matches: 245, Mismatches: 35, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 245 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GGGTATTTCGGTAATTCTACCCTACAG
Found at i:50462824 original size:54 final size:54
Alignment explanation
Indices: 50462767--50463072 Score: 468
Period size: 54 Copynumber: 5.7 Consensus size: 54
50462757 TACCCCATGA
* * * * *
50462767 GGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAA
1 GGGTATTTCGGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAG
* *
50462821 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAG
* ** *
50462875 GGGTATTTCGATAATTCTACCTTACAAGGGTATTTTGGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAG
*
50462929 GGGTATTTCGGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAG
* *
50462983 GGGTATTTCAGTAATTCTACCTTACAAGGGTATTTTAGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAG
* *
50463037 GGGTATTTCGGTAATTCTACCTTATAGGGGTATTTC
1 GGGTATTTCGGTAATTCTACCTTACAAGGGTATTTC
50463073 GAAAATTTTA
Statistics
Matches: 233, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 233 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
GGGTATTTCGGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAG
Found at i:50463122 original size:27 final size:27
Alignment explanation
Indices: 50463065--50463135 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
50463055 ACCTTATAGG
* * ** *
50463065 GGTATTTCGAAAATTTTAAAAATTAGG
1 GGTATTTTGATAATTTTAAAAACCAGA
*
50463092 GGTATTTTGATAATTTTACAAACCAGA
1 GGTATTTTGATAATTTTAAAAACCAGA
*
50463119 GGTATTTTGGTAATTTT
1 GGTATTTTGATAATTTT
50463136 GCTAATCGAA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.34, C:0.06, G:0.18, T:0.42
Consensus pattern (27 bp):
GGTATTTTGATAATTTTAAAAACCAGA
Found at i:50463148 original size:27 final size:27
Alignment explanation
Indices: 50463092--50463212 Score: 154
Period size: 27 Copynumber: 4.5 Consensus size: 27
50463082 AAAAATTAGG
* * * *
50463092 GGTATTTTGATAATTTTAC-AAACCAGA
1 GGTATTTTGGTAATTTTGCTAATCGA-A
50463119 GGTATTTTGGTAATTTTGCTAATCGAA
1 GGTATTTTGGTAATTTTGCTAATCGAA
* * *
50463146 GGTATTTTGGTACTTTTTCTAATCGAG
1 GGTATTTTGGTAATTTTGCTAATCGAA
*
50463173 GGTATTTTGGTAATTTTGCTAATCGAG
1 GGTATTTTGGTAATTTTGCTAATCGAA
50463200 GGTATTTTGGTAA
1 GGTATTTTGGTAA
50463213 ATTGGTAAAC
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
27 80 0.95
28 4 0.05
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.44
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTGCTAATCGAA
Found at i:50472259 original size:20 final size:21
Alignment explanation
Indices: 50472234--50472272 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
50472224 ATAAGGTCAT
*
50472234 TTAAGTAA-AATGATAAAAAG
1 TTAAGTAATAATAATAAAAAG
50472254 TTAAGTAATAATAATAAAA
1 TTAAGTAATAATAATAAAA
50472273 TATCATCTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (21 bp):
TTAAGTAATAATAATAAAAAG
Found at i:50473793 original size:27 final size:26
Alignment explanation
Indices: 50473746--50473796 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
50473736 CGAGGCTGCC
*
50473746 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
50473772 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
50473797 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:50482045 original size:46 final size:46
Alignment explanation
Indices: 50481992--50482082 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
50481982 TATATATACA
* * **
50481992 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCAGCTTTACCACATATC
* * *
50482038 CATCTCATACACATTTCGCATTAACCATTCAGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCAGCTTTACCACATAT
50482083 ATACACTTCC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.29, C:0.32, G:0.05, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCAGCTTTACCACATATC
Found at i:50482127 original size:47 final size:47
Alignment explanation
Indices: 50482096--50482341 Score: 411
Period size: 47 Copynumber: 5.2 Consensus size: 47
50482086 CACTTCCACG
*
50482096 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
50482143 TTTATCACATTGGCCATTCAGCCTTATCACATATGTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
50482190 TTCATCACATTGGCCATTCGGCCTTATCACACATTTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
50482237 TTCATCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
50482284 TTCATCACATTGGCCATTCGGCCTTATCACATATGTACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
50482331 TTCATCACATT
1 TTCATCACATT
50482342 AAATCCTAAA
Statistics
Matches: 186, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 186 1.00
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.36
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:50482267 original size:22 final size:22
Alignment explanation
Indices: 50482099--50482315 Score: 90
Period size: 22 Copynumber: 9.3 Consensus size: 22
50482089 TTCCACGTTC
50482099 ATCACATTGGCCA-TTCTGCCTT
1 ATCACATTGGCCATTTC-GCCTT
* * *
50482121 ATCACATATATG-CATGTTCACATTT
1 ATCACAT-T-GGCCAT-TTCGC-CTT
50482146 ATCACATTGGCCA-TTCAGCCTT
1 ATCACATTGGCCATTTC-GCCTT
* *
50482168 ATCACATATGTG-CATGTTCACATT
1 ATCACAT-TG-GCCAT-TTCGCCTT
50482192 CATCACATTGGCCA-TTCGGCCTT
1 -ATCACATTGGCCATTTC-GCCTT
* * *
50482215 ATCACACATTTG-CATGTTCACATT
1 AT--CACATTGGCCAT-TTCGCCTT
*
50482239 CATCACATTGGCCATTTGGCCTT
1 -ATCACATTGGCCATTTCGCCTT
* * *
50482262 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCAT-TTCGCCTT
50482286 CATCACATTGGCCA-TTCGGCCTT
1 -ATCACATTGGCCATTTC-GCCTT
50482309 ATCACAT
1 ATCACAT
50482316 ATGTACATGT
Statistics
Matches: 145, Mismatches: 24, Indels: 52
0.66 0.11 0.24
Matches are distributed among these distances:
22 41 0.28
23 35 0.24
24 35 0.24
25 34 0.23
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.35
Consensus pattern (22 bp):
ATCACATTGGCCATTTCGCCTT
Found at i:50482372 original size:94 final size:90
Alignment explanation
Indices: 50482163--50482361 Score: 240
Period size: 94 Copynumber: 2.2 Consensus size: 90
50482153 TGGCCATTCA
* * * * *
50482163 GCCTTATCACATATGTGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATTTGC
1 GCCTAATCAAATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATGTAC
**
50482228 ATGTTCACATTCATCACATTGGCCATTT
66 ATGTTCACATTCATCACATT---CAAAT
* * *
50482256 GGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATGTA
1 -GCCTAATCAAATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATGTA
50482321 CATGTTCACATTCATCACATT-AAAT
65 CATGTTCACATTCATCACATTCAAAT
50482346 -CCTAAATCAAAATATA
1 GCCT-AATC-AAATATA
50482362 AATTTTCATG
Statistics
Matches: 95, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
88 3 0.03
89 3 0.03
90 8 0.08
94 81 0.85
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (90 bp):
GCCTAATCAAATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATGTAC
ATGTTCACATTCATCACATTCAAAT
Found at i:50484659 original size:13 final size:13
Alignment explanation
Indices: 50484641--50484666 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50484631 ATTTTTATTT
50484641 TTAACATAAAATA
1 TTAACATAAAATA
50484654 TTAACATAAAATA
1 TTAACATAAAATA
50484667 ATTATATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:50495546 original size:16 final size:15
Alignment explanation
Indices: 50495525--50495555 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
50495515 TTATAGATTA
50495525 TTGGAAGCTCAATCGG
1 TTGGAAGCTC-ATCGG
50495541 TTGGAAGCTCATCGG
1 TTGGAAGCTCATCGG
50495556 AGACCTATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (15 bp):
TTGGAAGCTCATCGG
Found at i:50501721 original size:28 final size:28
Alignment explanation
Indices: 50501676--50501736 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
50501666 CAATATTAGT
* * * * *
50501676 ACAGTTTGGGCCTTAGCCCTATACAGTA
1 ACAGTGTGGACCTAAGCCCAATAAAGTA
50501704 ACAGTGTGGACCTAAGCCCAATAAAGTA
1 ACAGTGTGGACCTAAGCCCAATAAAGTA
*
50501732 TCAGT
1 ACAGT
50501737 ACAGTGTAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (28 bp):
ACAGTGTGGACCTAAGCCCAATAAAGTA
Found at i:50502145 original size:27 final size:27
Alignment explanation
Indices: 50502115--50502177 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
50502105 GGGCATAATC
*
50502115 GTCATTTTACCATATAAAGGTATTACG
1 GTCATTTTACCATACAAAGGTATTACG
* **
50502142 GTCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCATACAAAGGTATTACG
50502169 GTCATTTTA
1 GTCATTTTA
50502178 TGTATTTTGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCATACAAAGGTATTACG
Found at i:50504788 original size:29 final size:29
Alignment explanation
Indices: 50504727--50504803 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 29
50504717 CACATACCTG
* *
50504727 TATATGGTCTACTAGGCCC-AATCACATT
1 TATATGGACCACTAGGCCCAAATCACATT
*
50504755 TATATGGCCCACTAGGCCCAAATCACATT
1 TATATGGACCACTAGGCCCAAATCACATT
50504784 TATATGGACCATCT-GGCCCA
1 TATATGGACCA-CTAGGCCCA
50504804 TTAAGTCTGT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
28 17 0.39
29 25 0.57
30 2 0.05
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (29 bp):
TATATGGACCACTAGGCCCAAATCACATT
Found at i:50511520 original size:20 final size:18
Alignment explanation
Indices: 50511486--50511522 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
50511476 GCAACTCATA
50511486 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
50511504 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
50511523 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:50518288 original size:13 final size:13
Alignment explanation
Indices: 50518270--50518298 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
50518260 GGTTGTTTAT
50518270 TAAACTAATTAAC
1 TAAACTAATTAAC
50518283 TAAACTAATTAAC
1 TAAACTAATTAAC
50518296 TAA
1 TAA
50518299 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:50521664 original size:13 final size:12
Alignment explanation
Indices: 50521643--50521679 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
50521633 GCCAATTAAA
50521643 ACCAAAAAAATT
1 ACCAAAAAAATT
*
50521655 AGCAAAAAAATT
1 ACCAAAAAAATT
50521667 ACCAAAATAAATT
1 ACCAAAA-AAATT
50521680 CTAATGTCCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 17 0.77
13 5 0.23
ACGTcount: A:0.65, C:0.14, G:0.03, T:0.19
Consensus pattern (12 bp):
ACCAAAAAAATT
Found at i:50524238 original size:42 final size:44
Alignment explanation
Indices: 50524138--50524294 Score: 151
Period size: 43 Copynumber: 3.6 Consensus size: 44
50524128 TGTGCTATCA
** * * * *
50524138 TGTAAGACCACATCTGGGACATCGGCATAT-ATTTGTGATTTACG
1 TGTAAGACCATGTCTGGGACATTGGCATCTGATATATGA-TTACG
**
50524182 TGTAAGACCATGTCTGGGACATTGGCATC-G-TATATGATTTTG
1 TGTAAGACCATGTCTGGGACATTGGCATCTGATATATGATTACG
* * * *
50524224 TGTAAGACCCTGTCTGGGACAGTGGCA-CTGATATTTGATTACA
1 TGTAAGACCATGTCTGGGACATTGGCATCTGATATATGATTACG
* *
50524267 TGTAAGACCAGGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
50524295 TGTACGAGCT
Statistics
Matches: 91, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
41 1 0.01
42 29 0.32
43 36 0.40
44 25 0.27
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACATTGGCATCTGATATATGATTACG
Found at i:50526504 original size:18 final size:17
Alignment explanation
Indices: 50526471--50526512 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
50526461 ATATTGATGC
50526471 TATGTGATAGGAATTTG
1 TATGTGATAGGAATTTG
*
50526488 TATGTGAGTATGAATTTG
1 TATGTGA-TAGGAATTTG
*
50526506 AATGTGA
1 TATGTGA
50526513 CTGGGCCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.31, C:0.00, G:0.29, T:0.40
Consensus pattern (17 bp):
TATGTGATAGGAATTTG
Found at i:50526549 original size:29 final size:29
Alignment explanation
Indices: 50526506--50526644 Score: 183
Period size: 29 Copynumber: 4.9 Consensus size: 29
50526496 TATGAATTTG
* *
50526506 AATGTGA-CTGGGCCTAACGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
50526534 AATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
* *
50526563 CAGGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
* * *
50526592 CAGGTGATTTGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATA
* *
50526621 AATATGA-TTGGGCTTAATGGGCCA
1 AATGTGATTTGGGCCTAATGGGCCA
50526645 GATACAGGTA
Statistics
Matches: 101, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
28 23 0.23
29 78 0.77
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATA
Found at i:50527552 original size:15 final size:15
Alignment explanation
Indices: 50527520--50527558 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
50527510 GGCTTCCTTC
*
50527520 TTATTATTATTTGGA
1 TTATTATTATTTGCA
*
50527535 TTATTATTATTTTCA
1 TTATTATTATTTGCA
*
50527550 TTATAATTA
1 TTATTATTA
50527559 CTAGAAGTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.62
Consensus pattern (15 bp):
TTATTATTATTTGCA
Found at i:50527713 original size:21 final size:22
Alignment explanation
Indices: 50527676--50527748 Score: 82
Period size: 20 Copynumber: 3.5 Consensus size: 22
50527666 ATGTTAAGTA
* *
50527676 GTTTGTTTTTTTGTTAATTAAG
1 GTTTCTTTTATTGTTAATTAAG
*
50527698 GTTTCTTTTATT-TTAA-GAAGG
1 GTTTCTTTTATTGTTAATTAA-G
50527719 GTTT-TTTT-TTGTTAATTAAG
1 GTTTCTTTTATTGTTAATTAAG
50527739 GTTTCTTTTA
1 GTTTCTTTTA
50527749 AATGAAAACA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
19 2 0.05
20 15 0.36
21 15 0.36
22 10 0.24
ACGTcount: A:0.19, C:0.03, G:0.16, T:0.62
Consensus pattern (22 bp):
GTTTCTTTTATTGTTAATTAAG
Found at i:50531078 original size:29 final size:28
Alignment explanation
Indices: 50531023--50531126 Score: 129
Period size: 29 Copynumber: 3.6 Consensus size: 28
50531013 GTGAGCATGA
* *
50531023 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
50531051 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* *
50531080 ATAT-ACAGGTGATTTGGGCCTAATGGGTC
1 ATATGA-ATGTGA-TTGGGCCTAATGGGCC
*
50531109 ATATGAATATGATTGGGC
1 ATATGAATGTGATTGGGC
50531127 TTAACGGACC
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
28 19 0.28
29 47 0.70
30 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:50532202 original size:17 final size:18
Alignment explanation
Indices: 50532169--50532203 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
50532159 TTTTAAGAAG
50532169 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
50532187 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
50532204 TTCAATATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:50538518 original size:15 final size:15
Alignment explanation
Indices: 50538479--50538558 Score: 76
Period size: 15 Copynumber: 5.4 Consensus size: 15
50538469 ATATCTTGGG
*
50538479 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
50538494 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
50538509 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
50538524 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
50538539 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
50538553 TTTCTT
1 TTTCTT
50538559 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
14 12 0.23
15 37 0.70
16 4 0.08
ACGTcount: A:0.10, C:0.17, G:0.14, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:50540993 original size:46 final size:45
Alignment explanation
Indices: 50540940--50541114 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 45
50540930 TATTTGGGCA
50540940 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
* *** * * *
50540985 GTCCGAACTCATTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GC
* *
50541032 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
* *
50541078 TCCAGAGCTCGTTGAGTTGAGTCTGAGTTCAC-TATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50541115 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
45 8 0.07
46 63 0.59
47 36 0.34
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
Found at i:50541095 original size:93 final size:93
Alignment explanation
Indices: 50540936--50541107 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
50540926 GGGATATTTG
*
50540936 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
50541001 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
50541029 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC-TCCAGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCATTGA
*
50541093 GTTGAGTCTGAGTTC
65 GTTGAGTCCGAGTTC
50541108 ACTATGGGCG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 3 0.04
93 70 0.96
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:50542503 original size:48 final size:47
Alignment explanation
Indices: 50542417--50542605 Score: 200
Period size: 48 Copynumber: 4.0 Consensus size: 47
50542407 CGGGGCGTTA
* *
50542417 CATGATATGAGAGCCA-TGTAAGACCATGTTTGGAACATGGCATCAG
1 CATGACATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAG
*** * *
50542463 CGATGTTTTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTAG
1 C-ATGACATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAG
* * * * * *
50542511 CATTGAGATGAGAGCTAGTTTAAGACCATGTCTGGGATATGGCAACAG
1 CA-TGACATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAG
* * *
50542559 CCTCGACATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCA
1 CAT-GACATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCA
50542606 ACAATTTACC
Statistics
Matches: 117, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
46 1 0.01
47 15 0.13
48 101 0.86
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (47 bp):
CATGACATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAG
Found at i:50548379 original size:42 final size:43
Alignment explanation
Indices: 50548274--50548430 Score: 131
Period size: 43 Copynumber: 3.7 Consensus size: 43
50548264 TGTGTTATCG
** * * * *
50548274 TGTAAGAGTACGTTTGGGACGTTGGCATCGATTTGA-GATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGATAT-ATGA-TTACC
* * * * *
50548318 TGTAAAACAATGTCTGGGACATTGGCATC-ATATATGATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATATGATTACC
* * * *
50548360 TGTAAGACC-CTGTTTGGGACAGTGGCATCGATGTTTGATTACC
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATATGATTACC
50548403 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
50548431 TGTACGAGCT
Statistics
Matches: 89, Mismatches: 20, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
42 27 0.30
43 38 0.43
44 24 0.27
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATATGATTACC
Found at i:50563316 original size:49 final size:49
Alignment explanation
Indices: 50563260--50563389 Score: 147
Period size: 49 Copynumber: 2.7 Consensus size: 49
50563250 GTTGTGTGTT
* *
50563260 AGTGTAAGACCTGGCTGGGACATGGCATCGACACTAG-TAGT-TGAGAGCC
1 AGTGTAAGACCTGCCTGGGACATGGCATCGACA-TAGATA-TATGAAAGCC
* * * *
50563309 AGTGTAAGACCTACCTGGAACATGGCATTGACATAGATATATGAAAGTC
1 AGTGTAAGACCTGCCTGGGACATGGCATCGACATAGATATATGAAAGCC
* * *
50563358 AATGTAAGACCTGTCTGGGACACGGCATCGAC
1 AGTGTAAGACCTGCCTGGGACATGGCATCGAC
50563390 TTTAATGTGC
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
48 4 0.06
49 63 0.94
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.22
Consensus pattern (49 bp):
AGTGTAAGACCTGCCTGGGACATGGCATCGACATAGATATATGAAAGCC
Found at i:50567081 original size:40 final size:40
Alignment explanation
Indices: 50567027--50567316 Score: 160
Period size: 41 Copynumber: 7.1 Consensus size: 40
50567017 GTAAAAATTG
* *
50567027 TAAAACACATAGCAATAGCGGTGTTTTACCAAAAACGCCAC
1 TAAAA-ACAGAGCAATAGCGGCGTTTTACCAAAAACGCCAC
* **
50567068 TAAAAATAGAGCAATAGCGGCGTTTTAGTAAAAAACGCCAC
1 TAAAAACAGAGCAATAGCGGCGTTTTA-CCAAAAACGCCAC
* ** *
50567109 GAAAAACAGAG-AATTAGCGGCGCTTTTGGC-AAAACGCCGC
1 TAAAAACAGAGCAA-TAGCGGCG-TTTTACCAAAAACGCCAC
* * ** **
50567149 TAAAAACCAGAGCATTAGCAGCGCTTTT-GGAAAAACGCTGC
1 TAAAAA-CAGAGCAATAGCGGCG-TTTTACCAAAAACGCCAC
* * ** *
50567190 TAAAACCAGAGCATTAGCGGCGCTTTT-GGAAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCG-TTTTACCAAAAACGCCAC
* * * ** *
50567230 TAAAAACCAGAGCATTAACGGCGCTATTGGC-AAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCG-TTTTACCAAAAACGCCAC
* * ** *
50567271 TAAAAACCAAAGCATTAGCGGCGCTTTTGGC-AAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCG-TTTTACCAAAAACGCCAC
50567312 TAAAA
1 TAAAA
50567317 GTCATATAAC
Statistics
Matches: 215, Mismatches: 26, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
40 73 0.34
41 136 0.63
42 6 0.03
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.18
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGTTTTACCAAAAACGCCAC
Found at i:50567102 original size:41 final size:40
Alignment explanation
Indices: 50567057--50567316 Score: 290
Period size: 41 Copynumber: 6.4 Consensus size: 40
50567047 GTGTTTTACC
* * *
50567057 AAAAACGCCACTAAAAATAGAGCAATAGCGGCG-TTTTAGTA
1 AAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTT-G-G
* *
50567098 AAAAACGCCACGAAAAACAGAG-AATTAGCGGCGCTTTTGG
1 AAAAACGCCGCTAAAAACAGAGCAA-TAGCGGCGCTTTTGG
* * *
50567138 CAAAACGCCGCTAAAAACCAGAGCATTAGCAGCGCTTTTGG
1 AAAAACGCCGCTAAAAA-CAGAGCAATAGCGGCGCTTTTGG
* * *
50567179 AAAAACGCTGCTAAAACCAGAGCATTAGCGGCGCTTTTGG
1 AAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTTGG
* * *
50567219 AAAAACGCCGCTAAAAACCAGAGCATTAACGGCGCTATTGG
1 AAAAACGCCGCTAAAAA-CAGAGCAATAGCGGCGCTTTTGG
* * *
50567260 CAAAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTTTGG
1 AAAAACGCCGCTAAAAA-CAGAGCAATAGCGGCGCTTTTGG
*
50567301 CAAAACGCCGCTAAAA
1 AAAAACGCCGCTAAAA
50567317 GTCATATAAC
Statistics
Matches: 194, Mismatches: 20, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
40 53 0.27
41 136 0.70
42 5 0.03
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (40 bp):
AAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTTGG
Found at i:50567152 original size:81 final size:81
Alignment explanation
Indices: 50567058--50567316 Score: 342
Period size: 81 Copynumber: 3.2 Consensus size: 81
50567048 TGTTTTACCA
* * * * * * *
50567058 AAAACGCCACTAAAAA-TAGAGCAATAGCGGCG-TTTTAGTAAAAAACGCCACGAAAAACAGAGA
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTT-G-GAAAAACGCCGCTAAAAACAGAGC
50567121 ATTAGCGGCGCTTTTGGC
64 ATTAGCGGCGCTTTTGGC
* * *
50567139 AAAACGCCGCTAAAAACCAGAGCATTAGCAGCGCTTTTGGAAAAACGCTGCTAAAACCAGAGCAT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAAACAGAGCAT
*
50567204 TAGCGGCGCTTTTGGA
66 TAGCGGCGCTTTTGGC
* * * *
50567220 AAAACGCCGCTAAAAACCAGAGCATTAACGGCGCTATTGGCAAAACGCCGCTAAAAACCAAAGCA
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAAA-CAGAGCA
50567285 TTAGCGGCGCTTTTGGC
65 TTAGCGGCGCTTTTGGC
50567302 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
50567317 GTCATATAAC
Statistics
Matches: 156, Mismatches: 19, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
81 101 0.65
82 51 0.33
83 4 0.03
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.17
Consensus pattern (81 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAAACAGAGCAT
TAGCGGCGCTTTTGGC
Found at i:50567252 original size:122 final size:122
Alignment explanation
Indices: 50567057--50567316 Score: 362
Period size: 122 Copynumber: 2.1 Consensus size: 122
50567047 GTGTTTTACC
* *
50567057 AAAAACGCCACTAAAAATAGAGCAATAGCGGCGTTTTAGTAAAAAACGCCACGAAAAACAGAGAA
1 AAAAACGCCGCTAAAAACAGAGCAATAGCGGCGTTTTAGTAAAAAACGCCACGAAAAACAGAGAA
* * *
50567122 TTAGCGGCGCTTTTGGCAAAACGCCGCTAAAAACCAGAGCATTAGCAGCGCTTTTGG
66 TTAACGGCGCTATTGGCAAAACGCCGCTAAAAACCAAAGCATTAGCAGCGCTTTTGG
* * * * * *
50567179 AAAAACGCTGCTAAAACCAGAGCATTAGCGGCGCTTTT-G-GAAAAACGCCGCTAAAAACCAGAG
1 AAAAACGCCGCTAAAAACAGAGCAATAGCGGCG-TTTTAGTAAAAAACGCCACGAAAAA-CAGAG
* *
50567242 CATTAACGGCGCTATTGGCAAAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTTTGG
64 AATTAACGGCGCTATTGGCAAAACGCCGCTAAAAACCAAAGCATTAGCAGCGCTTTTGG
*
50567301 CAAAACGCCGCTAAAA
1 AAAAACGCCGCTAAAA
50567317 GTCATATAAC
Statistics
Matches: 121, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
121 15 0.12
122 102 0.84
123 4 0.03
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (122 bp):
AAAAACGCCGCTAAAAACAGAGCAATAGCGGCGTTTTAGTAAAAAACGCCACGAAAAACAGAGAA
TTAACGGCGCTATTGGCAAAACGCCGCTAAAAACCAAAGCATTAGCAGCGCTTTTGG
Found at i:50567497 original size:14 final size:14
Alignment explanation
Indices: 50567478--50567510 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
50567468 TATCATTATG
50567478 GTTTAAGATATATA
1 GTTTAAGATATATA
50567492 GTTTAAGATATATA
1 GTTTAAGATATATA
50567506 GTTTA
1 GTTTA
50567511 GGGTTTAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.45
Consensus pattern (14 bp):
GTTTAAGATATATA
Found at i:50567518 original size:21 final size:21
Alignment explanation
Indices: 50567492--50567565 Score: 76
Period size: 21 Copynumber: 3.3 Consensus size: 21
50567482 AAGATATATA
50567492 GTTTAAGATATATAGTTTAGG
1 GTTTAAGATATATAGTTTAGG
* * *
50567513 GTTTAAGATTTTTGAGTTAACTATG
1 GTTTAAGATATAT-AGTT---TAGG
*
50567538 GTTTAAGATATATGGTTTAGG
1 GTTTAAGATATATAGTTTAGG
50567559 GTTTAAG
1 GTTTAAG
50567566 GTTTAGGAGT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
21 21 0.50
22 4 0.10
24 3 0.07
25 14 0.33
ACGTcount: A:0.30, C:0.01, G:0.24, T:0.45
Consensus pattern (21 bp):
GTTTAAGATATATAGTTTAGG
Found at i:50567559 original size:46 final size:46
Alignment explanation
Indices: 50567492--50567581 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 46
50567482 AAGATATATA
**
50567492 GTTTAAGATATATAGTTTAGGGTTTAAGATTTTTGAGTTAACTATG
1 GTTTAAGATATATAGTTTAGGGTTTAAGATTTAGGAGTTAACTATG
* *
50567538 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTA
1 GTTTAAGATATATAGTTTAGGGTTTAAGATTTAGGAGTTAACTA
50567582 GTATTTGAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.43
Consensus pattern (46 bp):
GTTTAAGATATATAGTTTAGGGTTTAAGATTTAGGAGTTAACTATG
Found at i:50568219 original size:23 final size:23
Alignment explanation
Indices: 50568158--50568220 Score: 76
Period size: 23 Copynumber: 2.7 Consensus size: 23
50568148 TAATATCCTA
*
50568158 TATATGTAATTGTATTTAAATTT
1 TATATGTAATTGTATTAAAATTT
*
50568181 T-TAATTTATATT-TATTAAAATTT
1 TAT-ATGTA-ATTGTATTAAAATTT
50568204 TATATGTAATTGTATTA
1 TATATGTAATTGTATTA
50568221 GCATTTTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
22 4 0.12
23 25 0.76
24 4 0.12
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (23 bp):
TATATGTAATTGTATTAAAATTT
Found at i:50573447 original size:43 final size:43
Alignment explanation
Indices: 50573378--50573520 Score: 173
Period size: 43 Copynumber: 3.3 Consensus size: 43
50573368 TTTAATTTTT
* *
50573378 ATGACCTTTAGC-GACGTTTTTTGGAAAAGCGCCGCTAAAGGTC
1 ATGACCTTTAGCGGA-GTTTGTGGGAAAAGCGCCGCTAAAGGTC
* * *
50573421 TTGACCTTTGGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGGTC
1 ATGACCTTTAGCGGAGTTTGTGGGAAAAGCGCCGCTAAAGGTC
* * *
50573464 CTGACCTTTTA-CAGAGTTTGTGGGAAAAGCACCGCTAAAGGTC
1 ATGACC-TTTAGCGGAGTTTGTGGGAAAAGCGCCGCTAAAGGTC
*
50573507 AGGACCTTTAGCGG
1 ATGACCTTTAGCGG
50573521 CGTTGTTTTC
Statistics
Matches: 84, Mismatches: 13, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
42 4 0.05
43 76 0.90
44 4 0.05
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (43 bp):
ATGACCTTTAGCGGAGTTTGTGGGAAAAGCGCCGCTAAAGGTC
Found at i:50577602 original size:46 final size:46
Alignment explanation
Indices: 50577535--50577659 Score: 162
Period size: 46 Copynumber: 2.7 Consensus size: 46
50577525 ATGGTATGTA
* **
50577535 AGCCAATGTAAGACATGTCTGGGACATGCATCGGCCA-TGTTATGAG
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CATTGAGATGAG
**
50577581 AGCCAGTGTAAGACATGTCTGGGATGTGCATCGGCATTGAGATGAG
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGAG
* * *
50577627 AGCTAGTTTAAGACATGTCTGGGACATACATCG
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCG
50577660 ACTTCAGGAT
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
45 2 0.03
46 66 0.97
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGAG
Found at i:50583802 original size:56 final size:56
Alignment explanation
Indices: 50583736--50583865 Score: 215
Period size: 56 Copynumber: 2.3 Consensus size: 56
50583726 TCTTACATGT
* * *
50583736 AATCACATATCGATGCCACTGTCCCAGACAAGGTCTTACTTGCACACATATATCGG
1 AATCACATATCGATGCCACTGTCCCAAACAAGGTCTTACTCGCACACATATATCAG
**
50583792 AATCACATATCGATGCCACTGTCCCAAACTGGGTCTTACTCGCACACATATATCAG
1 AATCACATATCGATGCCACTGTCCCAAACAAGGTCTTACTCGCACACATATATCAG
50583848 AATCACATATCGATGCCA
1 AATCACATATCGATGCCA
50583866 TGGTCTTACT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 69 1.00
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.25
Consensus pattern (56 bp):
AATCACATATCGATGCCACTGTCCCAAACAAGGTCTTACTCGCACACATATATCAG
Found at i:50586601 original size:29 final size:30
Alignment explanation
Indices: 50586555--50586614 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
50586545 GAAGTAAATG
*
50586555 ATTGTGACTTACTTATAGTT-TTTTTCCAA
1 ATTGTGACTTACTCATAGTTCTTTTTCCAA
50586584 ATTGTGACTTACTCATAGTTCTTTTTCCAA
1 ATTGTGACTTACTCATAGTTCTTTTTCCAA
50586614 A
1 A
50586615 AACCCGAGCC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 19 0.66
30 10 0.34
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.48
Consensus pattern (30 bp):
ATTGTGACTTACTCATAGTTCTTTTTCCAA
Found at i:50592633 original size:78 final size:79
Alignment explanation
Indices: 50592512--50592682 Score: 272
Period size: 78 Copynumber: 2.2 Consensus size: 79
50592502 CAAATGGCCA
* * *
50592512 CACATGCCCGTGTGCCAAGTCTGTGTGCTAGGCCATGTCAAACCTATAGGGTATACTGACTTATG
1 CACACGCCCGTGTGCCAAGTCTGTGCGCTAGGCCATGCCAAACCTATAGGGTATACTGACTTATG
50592577 CCACATGGCCAAGT
66 CCACATGGCCAAGT
* * * *
50592591 CACACGCCCGTGTGCCAGGTC-GTGCGCTAGGTCGTGCCAAACCTGTAGGGTATACTGACTTATG
1 CACACGCCCGTGTGCCAAGTCTGTGCGCTAGGCCATGCCAAACCTATAGGGTATACTGACTTATG
50592655 CCACATGGCCAAGT
66 CCACATGGCCAAGT
50592669 CACACGCCCGTGTG
1 CACACGCCCGTGTG
50592683 TGAGGCCATG
Statistics
Matches: 85, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
78 66 0.78
79 19 0.22
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (79 bp):
CACACGCCCGTGTGCCAAGTCTGTGCGCTAGGCCATGCCAAACCTATAGGGTATACTGACTTATG
CCACATGGCCAAGT
Found at i:50601401 original size:40 final size:39
Alignment explanation
Indices: 50601357--50601461 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
50601347 AGTGACCATA
*
50601357 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
50601397 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
50601435 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
50601462 AACGAGTAGT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:50601418 original size:39 final size:40
Alignment explanation
Indices: 50601320--50601461 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
50601310 AATGATGTCT
* * *
50601320 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACC
* *
50601360 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACC
*
50601400 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
*
50601439 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
50601462 AACGAGTAGT
Statistics
Matches: 88, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
39 34 0.39
40 43 0.49
41 10 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
Found at i:50601755 original size:47 final size:47
Alignment explanation
Indices: 50601686--50601900 Score: 340
Period size: 47 Copynumber: 4.6 Consensus size: 47
50601676 AAGGGTTGGT
50601686 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
50601733 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50601780 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
50601827 AATGTGAAAGTGTATATATGTAACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
50601874 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
50601901 TCCCGAAGGG
Statistics
Matches: 154, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 154 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:50611610 original size:12 final size:12
Alignment explanation
Indices: 50611590--50611650 Score: 77
Period size: 12 Copynumber: 5.1 Consensus size: 12
50611580 TTTTTCTCTC
* *
50611590 TCAAACTCTTGT
1 TCAATCTCTTTT
50611602 TCAATCTCTTTT
1 TCAATCTCTTTT
*
50611614 TCAATTTCTTTT
1 TCAATCTCTTTT
*
50611626 TCAATCTCATTT
1 TCAATCTCTTTT
*
50611638 TCACTCTCTTTT
1 TCAATCTCTTTT
50611650 T
1 T
50611651 GTTCTTTTTC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 42 1.00
ACGTcount: A:0.18, C:0.25, G:0.02, T:0.56
Consensus pattern (12 bp):
TCAATCTCTTTT
Found at i:50611622 original size:36 final size:36
Alignment explanation
Indices: 50611582--50611650 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
50611572 TCAACTTCTT
50611582 TTTCTCTCTCAAACTC-TTGTTCAATCTCTTTTTCAA
1 TTTCTCTCTCAAACTCATT-TTCAATCTCTTTTTCAA
* * * *
50611618 TTTCTTTTTCAATCTCATTTTCACTCTCTTTTT
1 TTTCTCTCTCAAACTCATTTTCAATCTCTTTTT
50611651 GTTCTTTTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
36 26 0.93
37 2 0.07
ACGTcount: A:0.16, C:0.26, G:0.01, T:0.57
Consensus pattern (36 bp):
TTTCTCTCTCAAACTCATTTTCAATCTCTTTTTCAA
Found at i:50612701 original size:11 final size:12
Alignment explanation
Indices: 50612685--50612752 Score: 68
Period size: 12 Copynumber: 5.5 Consensus size: 12
50612675 AACACACTTA
50612685 TTTTTTCGAA-T
1 TTTTTTCGAACT
*
50612696 TTTTTTTGAACT
1 TTTTTTCGAACT
50612708 TTTTTTCGAAACT
1 TTTTTTCG-AACT
*
50612721 CTTTTTT-TAACTT
1 -TTTTTTCGAAC-T
50612734 TTTTTTCGAAACT
1 TTTTTTCG-AACT
50612747 TTTTTT
1 TTTTTT
50612753 TTAACTTACT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
11 9 0.19
12 17 0.36
13 12 0.26
14 9 0.19
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.65
Consensus pattern (12 bp):
TTTTTTCGAACT
Found at i:50612702 original size:12 final size:13
Alignment explanation
Indices: 50612680--50612753 Score: 77
Period size: 11 Copynumber: 5.8 Consensus size: 13
50612670 AATTTAACAC
50612680 ACTTATTTTTTCGA
1 ACTT-TTTTTTCGA
50612694 A-TTTTTTTT-GA
1 ACTTTTTTTTCGA
50612705 AC-TTTTTTTCGAA
1 ACTTTTTTTTCG-A
50612718 ACTCTTTTTTT--A
1 ACT-TTTTTTTCGA
50612730 ACTTTTTTTTCGAA
1 ACTTTTTTTTCG-A
50612744 ACTTTTTTTT
1 ACTTTTTTTT
50612754 TAACTTACTT
Statistics
Matches: 52, Mismatches: 0, Indels: 16
0.76 0.00 0.24
Matches are distributed among these distances:
11 17 0.33
12 11 0.21
13 5 0.10
14 12 0.23
15 7 0.13
ACGTcount: A:0.19, C:0.12, G:0.05, T:0.64
Consensus pattern (13 bp):
ACTTTTTTTTCGA
Found at i:50612736 original size:26 final size:25
Alignment explanation
Indices: 50612680--50612759 Score: 103
Period size: 26 Copynumber: 3.2 Consensus size: 25
50612670 AATTTAACAC
50612680 ACTTATTTTTTCG-AA-TTTTTTTTGA
1 ACTT-TTTTTTCGAAACTTTTTTTT-A
50612705 AC-TTTTTTTCGAAACTCTTTTTTTA
1 ACTTTTTTTTCGAAACT-TTTTTTTA
50612730 ACTTTTTTTTCGAAACTTTTTTTTTA
1 ACTTTTTTTTCGAAAC-TTTTTTTTA
50612756 ACTT
1 ACTT
50612760 ACTTGATGAG
Statistics
Matches: 50, Mismatches: 0, Indels: 9
0.85 0.00 0.15
Matches are distributed among these distances:
23 8 0.16
24 3 0.06
25 6 0.12
26 32 0.64
27 1 0.02
ACGTcount: A:0.20, C:0.12, G:0.05, T:0.62
Consensus pattern (25 bp):
ACTTTTTTTTCGAAACTTTTTTTTA
Found at i:50612758 original size:12 final size:12
Alignment explanation
Indices: 50612695--50612759 Score: 60
Period size: 14 Copynumber: 5.2 Consensus size: 12
50612685 TTTTTTCGAA
*
50612695 TTTTTTTTGAAC
1 TTTTTTTTAAAC
*
50612707 TTTTTTTCGAAAC
1 TTTTTTT-TAAAC
50612720 TCTTTTTTT-AAC
1 T-TTTTTTTAAAC
50612732 TTTTTTTTCGAAAC
1 TTTTTTTT--AAAC
*
50612746 TTTTTTTTTAAC
1 TTTTTTTTAAAC
50612758 TT
1 TT
50612760 ACTTGATGAG
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
11 7 0.16
12 16 0.36
13 4 0.09
14 17 0.39
ACGTcount: A:0.18, C:0.12, G:0.05, T:0.65
Consensus pattern (12 bp):
TTTTTTTTAAAC
Found at i:50628728 original size:9 final size:9
Alignment explanation
Indices: 50628714--50628742 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
50628704 GAATGCACCA
50628714 AAGGAGCTT
1 AAGGAGCTT
50628723 AAGGAGCTT
1 AAGGAGCTT
50628732 AAGGAGCTT
1 AAGGAGCTT
50628741 AA
1 AA
50628743 AGCGCAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.38, C:0.10, G:0.31, T:0.21
Consensus pattern (9 bp):
AAGGAGCTT
Found at i:50630762 original size:93 final size:93
Alignment explanation
Indices: 50630651--50630823 Score: 258
Period size: 93 Copynumber: 1.9 Consensus size: 93
50630641 CGCCCATAAG
*
50630651 CGAACTCAGACTCAACTCAACAAGCTC-GAGCGTTCACATCCACAAGTGAACTCAGACTCAACTC
1 CGAACTCAGACTCAACTCAACAAGCTCGGA-CATTCACATCCACAAGTGAACTCAGACTCAACTC
50630715 AACGAGCTAGGATGCCTAGTTACATCTCT
65 AACGAGCTAGGATGCCTAGTTACATCTCT
* * * * *
50630744 CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACAAGCTCGGACATTCACATCCACAAGTGAACTCAGACTCAACTCA
* *
50630809 ACGAGTTCGGATGCC
66 ACGAGCTAGGATGCC
50630824 CAAATATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
93 69 0.97
94 2 0.03
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.20
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACAAGCTCGGACATTCACATCCACAAGTGAACTCAGACTCAACTCA
ACGAGCTAGGATGCCTAGTTACATCTCT
Found at i:50635481 original size:5 final size:5
Alignment explanation
Indices: 50635471--50635495 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
50635461 TATTGGGGTT
50635471 GACAG GACAG GACAG GACAG GACAG
1 GACAG GACAG GACAG GACAG GACAG
50635496 AAATGAGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.40, T:0.00
Consensus pattern (5 bp):
GACAG
Found at i:50647673 original size:46 final size:46
Alignment explanation
Indices: 50647623--50647751 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
50647613 TGGTTGAGCA
* *
50647623 TCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
50647669 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
50647715 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50647752 GCGCGTTACA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:50653138 original size:46 final size:46
Alignment explanation
Indices: 50653086--50653213 Score: 193
Period size: 46 Copynumber: 2.8 Consensus size: 46
50653076 GGTTGAGCAT
* * *
50653086 CCGAACTCGTTGAATTGAGTCTGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
* * *
50653132 CTGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
*
50653178 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
50653214 GCGGGTTACA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
Found at i:50659429 original size:5 final size:5
Alignment explanation
Indices: 50659419--50659483 Score: 112
Period size: 5 Copynumber: 12.6 Consensus size: 5
50659409 CTGTGTGTTC
50659419 TTTAT TTTAT TTTATTT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTA--T TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
50659471 TTTAT TTTAT TTT
1 TTTAT TTTAT TTT
50659484 CACAAATTGG
Statistics
Matches: 58, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
5 53 0.91
7 5 0.09
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:50664109 original size:25 final size:25
Alignment explanation
Indices: 50664079--50664136 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
50664069 TTAACTACAT
50664079 GTATTTAATTCAATCAATTAATTTA
1 GTATTTAATTCAATCAATTAATTTA
* * *
50664104 GTATTTAGTTCCATTAATTAATTTA
1 GTATTTAATTCAATCAATTAATTTA
50664129 GT-TTTAAT
1 GTATTTAAT
50664137 CAAATTATAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 5 0.17
25 24 0.83
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (25 bp):
GTATTTAATTCAATCAATTAATTTA
Found at i:50665066 original size:40 final size:40
Alignment explanation
Indices: 50664987--50665066 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 40
50664977 CGGCGTTTAC
* * **
50664987 AAAAAAACGCCGCTAAAGGTCGACCTATAGCAGTGTTTTT
1 AAAAAAACACCGCTAAAAGTCGACCTATAGCAGCATTTTT
* * *
50665027 AAAAAAGCACCGCTAAAAGTCGACCTATGGCCGCATTTTT
1 AAAAAAACACCGCTAAAAGTCGACCTATAGCAGCATTTTT
50665067 CTCAAACGCC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.24
Consensus pattern (40 bp):
AAAAAAACACCGCTAAAAGTCGACCTATAGCAGCATTTTT
Found at i:50665276 original size:38 final size:37
Alignment explanation
Indices: 50665233--50665345 Score: 111
Period size: 38 Copynumber: 2.9 Consensus size: 37
50665223 CTTTGAGATT
* * *
50665233 TAGTGGCATTAGCGGCG-TTTTTCAAAAAGCGCCGCTAA
1 TAGTGGCATTAGCAGCGCTTTGT-AAAAAACGCCGC-AA
50665271 TAGTGGCATTAGCAGCGCTTTGTAAAAAACGCCGCAA
1 TAGTGGCATTAGCAGCGCTTTGTAAAAAACGCCGCAA
* * * *
50665308 TAGATTGAGTATTAGCAGCGCTTTTTGATAAACGCCGC
1 TAG--TG-GCATTAGCAGCGCTTTGTAAAAAACGCCGC
50665346 TAAAGCTCGA
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
37 5 0.08
38 27 0.42
39 6 0.09
40 26 0.41
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (37 bp):
TAGTGGCATTAGCAGCGCTTTGTAAAAAACGCCGCAA
Found at i:50666041 original size:22 final size:22
Alignment explanation
Indices: 50666012--50666065 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
50666002 CTTAAATCTC
*
50666012 AAAC-CTTAAA-CTATAAGCCCT
1 AAACTCTTAAATC-ATAAACCCT
50666033 AAACTCTTAAATCATAAACCCT
1 AAACTCTTAAATCATAAACCCT
*
50666055 AAAATCTTAAA
1 AAACTCTTAAA
50666066 AATAAATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 4 0.14
22 24 0.83
23 1 0.03
ACGTcount: A:0.48, C:0.24, G:0.02, T:0.26
Consensus pattern (22 bp):
AAACTCTTAAATCATAAACCCT
Found at i:50666556 original size:42 final size:42
Alignment explanation
Indices: 50666509--50666679 Score: 279
Period size: 42 Copynumber: 4.1 Consensus size: 42
50666499 TCAAGGTTTA
** * *
50666509 GGGTATTGGGTTTAGAATTTAGTTTATAAGGTTTAGGGTATT
1 GGGTATTGGGTTTAGGGTTTAGTCTATAGGGTTTAGGGTATT
50666551 GGGTATTGGGTTTAGGGTTTAGTCTATAGGGTTTAGGGTATT
1 GGGTATTGGGTTTAGGGTTTAGTCTATAGGGTTTAGGGTATT
*
50666593 GGGTATTTGGTTTAGGGTTTAGTCTATAGGGTTTAGGGTATT
1 GGGTATTGGGTTTAGGGTTTAGTCTATAGGGTTTAGGGTATT
* *
50666635 AGGTATTTGGTTTAGGGTTTAGTCTATAGGGTTTAGGGTATT
1 GGGTATTGGGTTTAGGGTTTAGTCTATAGGGTTTAGGGTATT
50666677 GGG
1 GGG
50666680 GTTTAGTGTA
Statistics
Matches: 122, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 122 1.00
ACGTcount: A:0.19, C:0.02, G:0.36, T:0.44
Consensus pattern (42 bp):
GGGTATTGGGTTTAGGGTTTAGTCTATAGGGTTTAGGGTATT
Found at i:50666562 original size:21 final size:21
Alignment explanation
Indices: 50666533--50666679 Score: 129
Period size: 21 Copynumber: 7.0 Consensus size: 21
50666523 GAATTTAGTT
*
50666533 TATAAGGTTTAGGGTATTGGG
1 TATAGGGTTTAGGGTATTGGG
* **
50666554 TATTGGGTTTAGGGT-TTAGTC
1 TATAGGGTTTAGGGTATT-GGG
50666575 TATAGGGTTTAGGGTATTGGG
1 TATAGGGTTTAGGGTATTGGG
** **
50666596 TATTTGGTTTAGGGT-TTAGTC
1 TATAGGGTTTAGGGTATT-GGG
*
50666617 TATAGGGTTTAGGGTATTAGG
1 TATAGGGTTTAGGGTATTGGG
** **
50666638 TATTTGGTTTAGGGT-TTAGTC
1 TATAGGGTTTAGGGTATT-GGG
50666659 TATAGGGTTTAGGGTATTGGG
1 TATAGGGTTTAGGGTATTGGG
50666680 GTTTAGTGTA
Statistics
Matches: 95, Mismatches: 25, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
20 6 0.06
21 83 0.87
22 6 0.06
ACGTcount: A:0.18, C:0.02, G:0.36, T:0.44
Consensus pattern (21 bp):
TATAGGGTTTAGGGTATTGGG
Found at i:50667081 original size:83 final size:82
Alignment explanation
Indices: 50666850--50667208 Score: 287
Period size: 84 Copynumber: 4.3 Consensus size: 82
50666840 AGTGGCACGG
* * * * **
50666850 TTAGTGGCGCTTAT-TAAAAAACGCCAC-AAAAATATGATTAAA-AGAATGAAAACGGCGTCATT
1 TTAGTGGCGC-TATCTTATAAACGCCACTAAAAATATGA-GAAACCGAATGAAAACTACGTCATT
* * * *
50666912 CTACTTGGAGGGACAGTGGAG
64 TTATTTGGCGGG--AGTGGAA
* ** * * ** * *
50666933 TTAGTGGCACTAGGTCATAAACGCCACTAAAAGTATGAGAAATTGTATTG-AAACGT-CGTCGTT
1 TTAGTGGCGCTATCTTATAAACGCCACTAAAAATATGAGAAACCG-AATGAAAAC-TACGTCATT
* *
50666996 TTATTTCGCGGGTAGTGGAT
64 TTATTTGGCGGG-AGTGGAA
50667016 TTAGTGGCGCTATCTTATAAACGCCACTAAAAATATGAGAAACCGAATGAAAACTACGTCATTTT
1 TTAGTGGCGCTATCTTATAAACGCCACTAAAAATATGAGAAACCGAATGAAAACTACGTCATTTT
* * *
50667081 ATGTGGCGCGATTTAGGAA
66 ATTTGGCGGGA-GT-GGAA
* * *
50667100 TTAGTGGCGCTATCGTATAAACGCCACTAAGAATATGAGAAACCGAATGAAAACTACGTCGTTTT
1 TTAGTGGCGCTATCTTATAAACGCCACTAAAAATATGAGAAACCGAATGAAAACTACGTCATTTT
* * **
50667165 ATGTGGCACGGTTTAGGAA
66 ATTTGGC-GGGAGT-GGAA
* *
50667184 TTAGTGGCGCTATCCTAGAAACGCC
1 TTAGTGGCGCTATCTTATAAACGCC
50667209 GCAAAAAAAC
Statistics
Matches: 228, Mismatches: 38, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
82 7 0.03
83 87 0.38
84 130 0.57
85 4 0.02
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.27
Consensus pattern (82 bp):
TTAGTGGCGCTATCTTATAAACGCCACTAAAAATATGAGAAACCGAATGAAAACTACGTCATTTT
ATTTGGCGGGAGTGGAA
Found at i:50667135 original size:84 final size:84
Alignment explanation
Indices: 50667016--50667208 Score: 323
Period size: 84 Copynumber: 2.3 Consensus size: 84
50667006 GGTAGTGGAT
*
50667016 TTAGTGGCGCTATCTTATAAACGCCACTAAAAATATGAGAAACCGAATGAAAACTACGTCATTTT
1 TTAGTGGCGCTATCCTATAAACGCCACTAAAAATATGAGAAACCGAATGAAAACTACGTCATTTT
*
50667081 ATGTGGCGCGATTTAGGAA
66 ATGTGGCACGATTTAGGAA
* * *
50667100 TTAGTGGCGCTATCGTATAAACGCCACTAAGAATATGAGAAACCGAATGAAAACTACGTCGTTTT
1 TTAGTGGCGCTATCCTATAAACGCCACTAAAAATATGAGAAACCGAATGAAAACTACGTCATTTT
*
50667165 ATGTGGCACGGTTTAGGAA
66 ATGTGGCACGATTTAGGAA
*
50667184 TTAGTGGCGCTATCCTAGAAACGCC
1 TTAGTGGCGCTATCCTATAAACGCC
50667209 GCAAAAAAAC
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 102 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.26
Consensus pattern (84 bp):
TTAGTGGCGCTATCCTATAAACGCCACTAAAAATATGAGAAACCGAATGAAAACTACGTCATTTT
ATGTGGCACGATTTAGGAA
Found at i:50667588 original size:16 final size:16
Alignment explanation
Indices: 50667567--50667599 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
50667557 GGAATGCAGA
50667567 TTTCTGTTGTTAATGC
1 TTTCTGTTGTTAATGC
50667583 TTTCTGTTGTTAATGC
1 TTTCTGTTGTTAATGC
50667599 T
1 T
50667600 CAGCACTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.18, T:0.58
Consensus pattern (16 bp):
TTTCTGTTGTTAATGC
Found at i:50681535 original size:40 final size:40
Alignment explanation
Indices: 50681498--50681722 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
50681488 GCTACTCGTT
* *
50681498 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
50681538 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
50681577 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
50681617 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
50681657 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-AACTCGCA
*
50681698 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
50681723 CATCATTCAA
Statistics
Matches: 169, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
39 37 0.22
40 120 0.71
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:50681663 original size:80 final size:79
Alignment explanation
Indices: 50681465--50681722 Score: 265
Period size: 80 Copynumber: 3.3 Consensus size: 79
50681455 AAATCACGTA
* * * * *
50681465 CCTTCGGAATTTAA-CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATA
1 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGTACAAATGCCTTCGGGACATAACCCGGTTATA
50681528 GTAACTCGCACAATG
65 GTAACTCGCACAATG
* *
50681543 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT-TA
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGGACATAACCCGG-TTATA
50681607 GTAACTCGCACAAATG
65 GTAACTCGCAC-AATG
** * ** *
50681623 CCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTACAAATGCCTTC-GGATCTTAGTCCGGATAT
1 CCTTCGGGA-CTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGGA-CATAACCCGGTTAT
* * * *
50681686 GGTCACCTAGCACAAAG
64 AGT-AACTCGCACAATG
*
50681703 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
50681723 CATCATTCAA
Statistics
Matches: 153, Mismatches: 18, Indels: 16
0.82 0.10 0.09
Matches are distributed among these distances:
78 13 0.08
79 57 0.37
80 73 0.48
81 10 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGGACATAACCCGGTTATAG
TAACTCGCACAATG
Found at i:50690104 original size:6 final size:6
Alignment explanation
Indices: 50690079--50690153 Score: 60
Period size: 6 Copynumber: 11.8 Consensus size: 6
50690069 GGTGTTAAAG
** **
50690079 AAAGCAA AAAGAGA ATAAGAA AAAGAA AAATGAA ATTGAA AAAGAA AGTGAA
1 AAAG-AA AAAGA-A A-AAGAA AAAGAA AAA-GAA AAAGAA AAAGAA AAAGAA
* *
50690131 AAAGAA AAAGAG AAGGAA AAAGA
1 AAAGAA AAAGAA AAAGAA AAAGA
50690154 GATCGAGATC
Statistics
Matches: 53, Mismatches: 12, Indels: 7
0.74 0.17 0.10
Matches are distributed among these distances:
6 37 0.70
7 12 0.23
8 4 0.08
ACGTcount: A:0.71, C:0.01, G:0.21, T:0.07
Consensus pattern (6 bp):
AAAGAA
Found at i:50715945 original size:29 final size:29
Alignment explanation
Indices: 50715882--50715949 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
50715872 TAATCAACCG
50715882 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
50715911 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
50715940 CGCACACTTA
1 CGCACACTTA
50715950 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:50716062 original size:174 final size:174
Alignment explanation
Indices: 50715771--50716098 Score: 584
Period size: 174 Copynumber: 1.9 Consensus size: 174
50715761 AACTCAAGGT
* *
50715771 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
50715836 GAAAATAGATATTGGGTTCGCACACATAGTACTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATAGATATTGGGTTCGCACACATAGTACTTAATAATCAACCACGCACACTTAGTGCCATGC
50715901 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
50715945 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* * *
50716010 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATAGATATTGGGTTCGCACACATAGTACTTAATAATCAACCACGCACACTTAGTGCCATGC
*
50716075 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
50716099 TGTACAATTT
Statistics
Matches: 146, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 146 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATAGATATTGGGTTCGCACACATAGTACTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Done.