Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 152 of 344
Found at i:50716090 original size:29 final size:30
Alignment explanation
Indices: 50716051--50716129 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
50716041 CTTAATAATC
50716051 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
50716081 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
50716110 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
50716130 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:50724084 original size:29 final size:29
Alignment explanation
Indices: 50724021--50724088 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
50724011 TAATCAACCG
50724021 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
50724050 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
50724079 CGCACACTTA
1 CGCACACTTA
50724089 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:50724200 original size:173 final size:174
Alignment explanation
Indices: 50723910--50724236 Score: 593
Period size: 173 Copynumber: 1.9 Consensus size: 174
50723900 AACTCAAGGT
* *
50723910 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
50723975 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
50724040 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
50724084 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCA-CCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
50724148 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
50724213 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
50724237 TGTACAATTT
Statistics
Matches: 147, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
173 106 0.72
174 41 0.28
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:50724228 original size:29 final size:30
Alignment explanation
Indices: 50724189--50724267 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
50724179 CTTAATAATC
50724189 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
50724219 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
50724248 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
50724268 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:50732052 original size:40 final size:40
Alignment explanation
Indices: 50731817--50732038 Score: 272
Period size: 40 Copynumber: 5.5 Consensus size: 40
50731807 ATGATGTCCA
* * * *
50731817 GGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAATCCG
* *
50731857 GACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAATCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
50731897 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* *
50731937 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* *
50731977 GGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
*
50732017 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
50732039 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 153 0.93
41 10 0.06
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:50736192 original size:64 final size:64
Alignment explanation
Indices: 50736011--50736193 Score: 181
Period size: 64 Copynumber: 2.8 Consensus size: 64
50736001 TATAGTTCAG
* * * * * * * *
50736011 CTCTCTTGTAC-ACATGGTGAACGCTTAGTACCACCCATGTGACCTAGCCA-ATTTATCTCGTAG
1 CTCTCTTGT-CTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATATATCCCGTAC
* * * * *
50736074 CTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCCCGT
1 CTCTCTTGTCTACATGGTG---TACACATAGTACCACCCATGCGACCTAGCTACATATATCCCGT
50736139 AC
63 AC
* *
50736141 CTTTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 CTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACAT
50736194 CATAATGTCT
Statistics
Matches: 96, Mismatches: 19, Indels: 9
0.77 0.15 0.07
Matches are distributed among these distances:
62 1 0.01
63 17 0.18
64 28 0.29
66 22 0.23
67 28 0.29
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (64 bp):
CTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATATATCCCGTAC
Found at i:50737125 original size:20 final size:20
Alignment explanation
Indices: 50737096--50737137 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
50737086 TACTTATGAC
*
50737096 TATTAGGTATTTTTACCGAT
1 TATTAAGTATTTTTACCGAT
50737116 TATTAAGTATTTTTACCGAT
1 TATTAAGTATTTTTACCGAT
50737136 TA
1 TA
50737138 AGCCCTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TATTAAGTATTTTTACCGAT
Found at i:50740345 original size:46 final size:46
Alignment explanation
Indices: 50740289--50740417 Score: 206
Period size: 46 Copynumber: 2.8 Consensus size: 46
50740279 TGGTTGAGCA
*
50740289 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCG-ACTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC-G
*
50740335 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
50740381 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50740418 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
46 75 0.97
47 2 0.03
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:50742687 original size:21 final size:21
Alignment explanation
Indices: 50742661--50742700 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
50742651 GGTGGGGTTA
* *
50742661 CCAGTCTAGGCTAAATCCCCG
1 CCAGTCCAGGATAAATCCCCG
50742682 CCAGTCCAGGATAAATCCC
1 CCAGTCCAGGATAAATCCC
50742701 TTATAGTCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.38, G:0.17, T:0.17
Consensus pattern (21 bp):
CCAGTCCAGGATAAATCCCCG
Found at i:50745551 original size:42 final size:43
Alignment explanation
Indices: 50745426--50745681 Score: 178
Period size: 43 Copynumber: 6.0 Consensus size: 43
50745416 CCACTATAAT
* *
50745426 ACATGACCTTTAGCGGTGCTTCTCCCATAAACG-TCGCTAAAGA
1 ACATGACCTTTAGCGGCGCTTTTCCCATAAACGCT-GCTAAAGA
* * * * **
50745469 ACATGACCTTTAGCAGCGCTTTTCCTAAAAACACCACTAAAGA
1 ACATGACCTTTAGCGGCGCTTTTCCCATAAACGCTGCTAAAGA
* *
50745512 ACATGACC-TTAGCGGCACTTTTCCCATAAATGCTGCTAAAGA
1 ACATGACCTTTAGCGGCGCTTTTCCCATAAACGCTGCTAAAGA
* * * * * * ** *
50745554 GCATGACCTTGAGCAGCG-ATTTCCCACAAACACCACTCAAGA
1 ACATGACCTTTAGCGGCGCTTTTCCCATAAACGCTGCTAAAGA
* ** ** * * * *
50745596 GCATGACCTTTATAGGAACTTTTCCTAAAAACGCCGCTAAAAA
1 ACATGACCTTTAGCGGCGCTTTTCCCATAAACGCTGCTAAAGA
* * * *
50745639 ACATGACCTTTAGTGGC-ATTGTCCCCACAAACGCTGCTAAAGA
1 ACATGACCTTTAGCGGCGCTT-TTCCCATAAACGCTGCTAAAGA
50745682 CCATATCAAA
Statistics
Matches: 159, Mismatches: 50, Indels: 8
0.73 0.23 0.04
Matches are distributed among these distances:
42 64 0.40
43 95 0.60
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (43 bp):
ACATGACCTTTAGCGGCGCTTTTCCCATAAACGCTGCTAAAGA
Found at i:50745553 original size:85 final size:85
Alignment explanation
Indices: 50745409--50745651 Score: 258
Period size: 85 Copynumber: 2.9 Consensus size: 85
50745399 GTTTATGTGG
* * ** *
50745409 AAAAACGCCACTATAA-TACATGACCTTTAGCGGTGCTTCTCCCATAAACG-TCGCTAAAGAACA
1 AAAAACACCACTA-AAGAACATGACCTTTAGCGGAACTTTTCCCATAAACGCT-GCTAAAGAACA
* *
50745472 TGACCTTTAGCAGCGCTTTTCCT
64 TGACCTTTAGCAGCG-ATTTCCC
* * *
50745495 AAAAACACCACTAAAGAACATGACC-TTAGCGGCACTTTTCCCATAAATGCTGCTAAAGAGCATG
1 AAAAACACCACTAAAGAACATGACCTTTAGCGGAACTTTTCCCATAAACGCTGCTAAAGAACATG
*
50745559 ACCTTGAGCAGCGATTTCCC
66 ACCTTTAGCAGCGATTTCCC
* * * ** * * * *
50745579 ACAAACACCACTCAAGAGCATGACCTTTATAGGAACTTTTCCTAAAAACGCCGCTAAAAAACATG
1 AAAAACACCACTAAAGAACATGACCTTTAGCGGAACTTTTCCCATAAACGCTGCTAAAGAACATG
50745644 ACCTTTAG
66 ACCTTTAG
50745652 TGGCATTGTC
Statistics
Matches: 131, Mismatches: 23, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
84 27 0.21
85 83 0.63
86 21 0.16
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (85 bp):
AAAAACACCACTAAAGAACATGACCTTTAGCGGAACTTTTCCCATAAACGCTGCTAAAGAACATG
ACCTTTAGCAGCGATTTCCC
Found at i:50746320 original size:22 final size:22
Alignment explanation
Indices: 50746294--50746336 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
50746284 AATATTAAAG
50746294 ACCGGAAGAGATAAAAAGAAAC
1 ACCGGAAGAGATAAAAAGAAAC
*
50746316 ACCGGAAGAGATAAGAAGAAA
1 ACCGGAAGAGATAAAAAGAAA
50746337 GTAGTATCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.58, C:0.12, G:0.26, T:0.05
Consensus pattern (22 bp):
ACCGGAAGAGATAAAAAGAAAC
Found at i:50748881 original size:22 final size:24
Alignment explanation
Indices: 50748836--50748883 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
50748826 TAATCTTTAA
50748836 TATATAATTATATCTATTATAATT
1 TATATAATTATATCTATTATAATT
50748860 TATAT-ATTA-ATCT-TTATCAATT
1 TATATAATTATATCTATTAT-AATT
50748882 TA
1 TA
50748884 GCATAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 4 0.17
24 5 0.22
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (24 bp):
TATATAATTATATCTATTATAATT
Found at i:50756661 original size:22 final size:22
Alignment explanation
Indices: 50756634--50756708 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
50756624 CATGTGTATG
50756634 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
50756656 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
50756681 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
50756703 TGTGAT
1 TGTGAT
50756709 GGATGTGGAA
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 14 0.37
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:50756723 original size:47 final size:47
Alignment explanation
Indices: 50756446--50756715 Score: 479
Period size: 47 Copynumber: 5.7 Consensus size: 47
50756436 AGTATATATA
* *
50756446 TGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
50756493 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
50756540 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
50756587 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
* *
50756634 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATG
*
50756681 TGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
50756716 GAAGTGTATA
Statistics
Matches: 217, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
46 1 0.00
47 216 1.00
ACGTcount: A:0.29, C:0.10, G:0.33, T:0.27
Consensus pattern (47 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
Found at i:50756732 original size:141 final size:140
Alignment explanation
Indices: 50756435--50756736 Score: 473
Period size: 141 Copynumber: 2.1 Consensus size: 140
50756425 ATTGATGTAC
* * *
50756435 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATA
1 AAGTGTATA-ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATA
* *
50756500 AGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGT
65 AGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGT
50756565 GATGAATGTGA
130 GATGAATGTGA
*
50756576 ACATGTGTAT-GTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGAT
1 A-A-GTGTATAATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGAT
50756640 AAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAAT
64 AAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAAT
* *
50756704 GTGATGGATGTGG
128 GTGATGAATGTGA
50756717 AAGTGTATAAATGTGATAAG
1 AAGTGTAT-AATGTGATAAG
50756737 TCCCGAAGGG
Statistics
Matches: 147, Mismatches: 9, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
139 6 0.04
140 2 0.01
141 133 0.90
142 1 0.01
143 5 0.03
ACGTcount: A:0.31, C:0.09, G:0.32, T:0.28
Consensus pattern (140 bp):
AAGTGTATAATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAA
GGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTG
ATGAATGTGA
Found at i:50759228 original size:38 final size:38
Alignment explanation
Indices: 50759164--50759238 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
50759154 AATCCGAGTT
*
50759164 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
50759202 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
50759239 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:50759634 original size:198 final size:197
Alignment explanation
Indices: 50759292--50759650 Score: 583
Period size: 198 Copynumber: 1.8 Consensus size: 197
50759282 AGGTCTCGAC
*
50759292 GATGATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGA
1 GATGATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGA
* ** *
50759357 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGG
66 GCATTCGTGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGTGATATATCCGG
*
50759422 GCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTACCGGGCTAAGTCCGAAGAGCATTCATGCTA
131 GCTAAGTCCCGAAGAGCAATCATGCTAGTGATGTACCGGGCTAAGTCCGAAGAGCATTCATGCTA
50759487 GT
196 GT
* *
50759489 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAG
1 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAG
* * * *
50759554 AGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
65 AGCATTCGTGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGTGATATATCCG
* *
50759619 GGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
130 GGCTAAGTCCCGAAGAGCAATCATGCTAGTGA
50759651 CGTGTATTCG
Statistics
Matches: 147, Mismatches: 14, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
197 4 0.03
198 143 0.97
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (197 bp):
GATGATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGA
GCATTCGTGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGTGATATATCCGG
GCTAAGTCCCGAAGAGCAATCATGCTAGTGATGTACCGGGCTAAGTCCGAAGAGCATTCATGCTA
GT
Found at i:50759649 original size:40 final size:40
Alignment explanation
Indices: 50759292--50759637 Score: 545
Period size: 40 Copynumber: 8.7 Consensus size: 40
50759282 AGGTCTCGAC
50759292 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
50759331 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
50759371 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
50759411 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
50759451 GATGTA-CCGGGCTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
50759489 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
50759529 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** *
50759569 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
50759609 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
50759638 ATCATGCTGG
Statistics
Matches: 286, Mismatches: 18, Indels: 5
0.93 0.06 0.02
Matches are distributed among these distances:
38 27 0.09
39 26 0.09
40 233 0.81
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:50763277 original size:47 final size:47
Alignment explanation
Indices: 50763000--50763269 Score: 470
Period size: 47 Copynumber: 5.7 Consensus size: 47
50762990 AGTATATATA
* *
50763000 TGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
50763047 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
*
50763094 TGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
50763141 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
* *
50763188 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATG
*
50763235 TGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
50763270 GAAGTGTATA
Statistics
Matches: 215, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
46 1 0.00
47 214 1.00
ACGTcount: A:0.29, C:0.10, G:0.33, T:0.28
Consensus pattern (47 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
Found at i:50763286 original size:141 final size:140
Alignment explanation
Indices: 50762989--50763290 Score: 464
Period size: 141 Copynumber: 2.1 Consensus size: 140
50762979 ATTGATGTAC
* * *
50762989 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATA
1 AAGTGTATA-ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATA
* * *
50763054 AGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGTCGAATGGCCAATGT
65 AGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGT
50763119 GATGAATGTGA
130 GATGAATGTGA
*
50763130 ACATGTGTAT-GTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGAT
1 A-A-GTGTATAATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGAT
50763194 AAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAAT
64 AAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAAT
* *
50763258 GTGATGGATGTGG
128 GTGATGAATGTGA
50763271 AAGTGTATAAATGTGATAAG
1 AAGTGTAT-AATGTGATAAG
50763291 TCCCGAAGGG
Statistics
Matches: 146, Mismatches: 10, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
139 6 0.04
140 2 0.01
141 132 0.90
142 1 0.01
143 5 0.03
ACGTcount: A:0.31, C:0.09, G:0.32, T:0.28
Consensus pattern (140 bp):
AAGTGTATAATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAA
GGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTG
ATGAATGTGA
Found at i:50767923 original size:40 final size:40
Alignment explanation
Indices: 50767841--50768006 Score: 210
Period size: 40 Copynumber: 4.2 Consensus size: 40
50767831 CGTTTGGATA
* * * *
50767841 AAAAACGCCGCTATAGATCGAGCACTAGCGACGATTTT-G
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTCG
50767880 AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTCG
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTCG
* * * *
50767920 AAAAATGCCACTATAGATCGAGTATTAGTGGCGCTTTTCA
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTCG
* * *
50767960 AAAAATGCCGCTATA-AGTCGACCATTAGCGGCGGTTTTTG
1 AAAAATGCCGCTATAGA-TCGAGCATTAGCGGCGCTTTTCG
50768000 AAAAATG
1 AAAAATG
50768007 AAGCAAAAAA
Statistics
Matches: 110, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 35 0.32
40 75 0.68
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (40 bp):
AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTCG
Found at i:50768111 original size:40 final size:40
Alignment explanation
Indices: 50768056--50768159 Score: 118
Period size: 40 Copynumber: 2.6 Consensus size: 40
50768046 GCTGTAGTGA
* * * *
50768056 CATTAGCAGTGCTTTTTGAAAAACGCCACTATAGATTAAG
1 CATTAGCGGTGCTTTTTAAAAAACGCCACTATAGATCAAC
** * *
50768096 CATTAGCGGTGCTTTTTAAAAAACGCCGTTATAGGTCGAC
1 CATTAGCGGTGCTTTTTAAAAAACGCCACTATAGATCAAC
*
50768136 CATTAGCGGCGCTTTTTTAAAAAA
1 CATTAGCGGTGC-TTTTTAAAAAA
50768160 GCCGCAAAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
40 43 0.80
41 11 0.20
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (40 bp):
CATTAGCGGTGCTTTTTAAAAAACGCCACTATAGATCAAC
Found at i:50768189 original size:154 final size:155
Alignment explanation
Indices: 50767902--50768273 Score: 485
Period size: 154 Copynumber: 2.4 Consensus size: 155
50767892 ATAGATCGAG
* * * * *
50767902 CATTAGCGGCGCTTTTCGAAAAATGCCACTATAGATCGAGTATTAGTGGCGCTTTTCAAAAAATG
1 CATTAGCGGCGCTTTTTGAAAAATGCCACTATAGATCAAGCATTAGCGGCGCTTTTCAAAAAACG
* * *
50767967 CCGCTATAAGTCGACCATTAGCGGCGGTTTTTGAAAAATGAAGCAAAAAAATTAAGCACAACGTC
66 CCGCTATAAGTCGACCATTAGCGGCGCTTTTTGAAAAAAGAAGCAAAAAAATTAAGCACAACGCC
50768032 GTCGTTTTATGTT-AGCTGTAGTGA
131 GTCGTTTTATGTTGAGCTGTAGTGA
* * * * * *
50768056 CATTAGCAGTGCTTTTTGAAAAACGCCACTATAGATTAAGCATTAGCGGTGCTTTTTAAAAAACG
1 CATTAGCGGCGCTTTTTGAAAAATGCCACTATAGATCAAGCATTAGCGGCGCTTTTCAAAAAACG
* * * ** *
50768121 CCGTTATAGGTCGACCATTAGCGGCGCTTTTTTAAAAAAGCCGCAAAAAAATTAAGCATAACGCC
66 CCGCTATAAGTCGACCATTAGCGGCGCTTTTTGAAAAAAGAAGCAAAAAAATTAAGCACAACGCC
* *
50768186 GTCGTTTTATGTTGAGCTTTAGTGG
131 GTCGTTTTATGTTGAGCTGTAGTGA
* * * * *
50768211 CATTAGCGGCGCTTTTTGGAAAATGCCGCTATAGATCGAGCTTTAGCGTCGCTTTATCAAAAA
1 CATTAGCGGCGCTTTTTGAAAAATGCCACTATAGATCAAGCATTAGCGGCGCTTT-TCAAAAA
50768274 CACCGTAAAA
Statistics
Matches: 183, Mismatches: 33, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
154 123 0.67
155 54 0.30
156 6 0.03
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (155 bp):
CATTAGCGGCGCTTTTTGAAAAATGCCACTATAGATCAAGCATTAGCGGCGCTTTTCAAAAAACG
CCGCTATAAGTCGACCATTAGCGGCGCTTTTTGAAAAAAGAAGCAAAAAAATTAAGCACAACGCC
GTCGTTTTATGTTGAGCTGTAGTGA
Found at i:50768345 original size:21 final size:21
Alignment explanation
Indices: 50768320--50768360 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
50768310 TAACTTGTTT
50768320 ATTTA-TATTAATTGAAATACA
1 ATTTATTATTAATT-AAATACA
*
50768341 ATTTATTTTTAATTAAATAC
1 ATTTATTATTAATTAAATAC
50768361 TTAAATTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (21 bp):
ATTTATTATTAATTAAATACA
Found at i:50768535 original size:14 final size:14
Alignment explanation
Indices: 50768516--50768565 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
50768506 TTAATTATCA
50768516 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
* *
50768530 TTATAGTTTAAGAT
1 TTATAGTTTAGGGT
* *
50768544 GTATGGTTTAGGGT
1 TTATAGTTTAGGGT
50768558 TTA-AGTTT
1 TTATAGTTT
50768566 TAGGAGTTAC
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
13 4 0.14
14 24 0.86
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:50768622 original size:14 final size:14
Alignment explanation
Indices: 50768595--50768658 Score: 56
Period size: 14 Copynumber: 4.5 Consensus size: 14
50768585 GTTTATATAT
50768595 GGATTATGGGTTTAG
1 GGATTAT-GGTTTAG
*
50768610 GGATTATGGTTTAT
1 GGATTATGGTTTAG
* * *
50768624 GGTTTAAGGGTTAG
1 GGATTATGGTTTAG
* *
50768638 GGTTTAAGGTTTAG
1 GGATTATGGTTTAG
*
50768652 GGGTTAT
1 GGATTAT
50768659 ATATTGGTTA
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
14 34 0.83
15 7 0.17
ACGTcount: A:0.20, C:0.00, G:0.38, T:0.42
Consensus pattern (14 bp):
GGATTATGGTTTAG
Found at i:50768626 original size:7 final size:7
Alignment explanation
Indices: 50768592--50768721 Score: 50
Period size: 7 Copynumber: 18.7 Consensus size: 7
50768582 AAGGTTTATA
*
50768592 TATGGAT
1 TATGGTT
50768599 TATGGGTT
1 TAT-GGTT
* *
50768607 TAGGGAT
1 TATGGTT
50768614 TATGGTT
1 TATGGTT
50768621 TATGGTT
1 TATGGTT
* *
50768628 TAAGGGT
1 TATGGTT
*
50768635 TAGGGTT
1 TATGGTT
*
50768642 TAAGGTT
1 TATGGTT
* *
50768649 TAGGGGT
1 TATGGTT
* *
50768656 TAT-ATA
1 TATGGTT
50768662 T-TGG-T
1 TATGGTT
* *
50768667 TAAGGGT
1 TATGGTT
*
50768674 TAGGGGTT
1 TA-TGGTT
*
50768682 TAGGGTT
1 TATGGTT
*
50768689 TATGATT
1 TATGGTT
*
50768696 TATGTTT
1 TATGGTT
*
50768703 TATGATT
1 TATGGTT
*
50768710 TAAGGTT
1 TATGGTT
50768717 TATGG
1 TATGG
50768722 GGATAGGAGA
Statistics
Matches: 90, Mismatches: 28, Indels: 10
0.70 0.22 0.08
Matches are distributed among these distances:
5 2 0.02
6 3 0.03
7 75 0.83
8 10 0.11
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.45
Consensus pattern (7 bp):
TATGGTT
Found at i:50768629 original size:21 final size:20
Alignment explanation
Indices: 50768592--50768658 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 20
50768582 AAGGTTTATA
*
50768592 TATGGATTATGGGTTTAGGGAT
1 TATGGTTTAT-GGTTTAGGG-T
50768614 TATGGTTTATGGTTTAAGGGT
1 TATGGTTTATGGTTT-AGGGT
* *
50768635 TAGGGTTTAAGGTTTAGGGGT
1 TATGGTTTATGGTTTA-GGGT
50768656 TAT
1 TAT
50768659 ATATTGGTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
20 1 0.03
21 25 0.64
22 13 0.33
ACGTcount: A:0.21, C:0.00, G:0.36, T:0.43
Consensus pattern (20 bp):
TATGGTTTATGGTTTAGGGT
Found at i:50769821 original size:20 final size:21
Alignment explanation
Indices: 50769776--50769830 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
50769766 TAAAAATTAC
* *
50769776 AAAAATCTTCAAAATAAAATT
1 AAAAATCTTAAAAATAAAAAT
*
50769797 TAAAAT-TTAAAAATAAAAAT
1 AAAAATCTTAAAAATAAAAAT
*
50769817 AAAAAAACTTAAAA
1 -AAAAATCTTAAAA
50769831 TTTTAATATT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
20 12 0.44
21 9 0.33
22 6 0.22
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.25
Consensus pattern (21 bp):
AAAAATCTTAAAAATAAAAAT
Found at i:50770057 original size:41 final size:41
Alignment explanation
Indices: 50769973--50770071 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
50769963 GAAAAAAATC
* **
50769973 AAAA-TTTAGCAATAGTGACGTTTTTGGGTAAAAAGCCACA
1 AAAAGTTTAGCTATAGTGACGTTTTTGCATAAAAAGCCACA
*
50770013 AAAAGTTTAGCTATAGTGACGTTTTT-CATAAAAA-CGCAGTA
1 AAAAGTTTAGCTATAGTGACGTTTTTGCATAAAAAGC-CA-CA
*
50770054 AAAAGTTGAGCTATAGTG
1 AAAAGTTTAGCTATAGTG
50770072 GCGCTTCCAA
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
39 1 0.02
40 12 0.24
41 38 0.75
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.29
Consensus pattern (41 bp):
AAAAGTTTAGCTATAGTGACGTTTTTGCATAAAAAGCCACA
Found at i:50770185 original size:11 final size:11
Alignment explanation
Indices: 50770171--50770195 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
50770161 CGTTACTCCC
50770171 TCTTCTTCTCA
1 TCTTCTTCTCA
50770182 TCTTCTTCTCA
1 TCTTCTTCTCA
50770193 TCT
1 TCT
50770196 CATTTTACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.36, G:0.00, T:0.56
Consensus pattern (11 bp):
TCTTCTTCTCA
Found at i:50774306 original size:43 final size:43
Alignment explanation
Indices: 50774245--50774399 Score: 202
Period size: 43 Copynumber: 3.6 Consensus size: 43
50774235 TATACTTTTC
* * * * *
50774245 AAAGGTCATATTTTTTAGCGGCGTTTGTAGAAAAAGAGCCGCT
1 AAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT
* *
50774288 AAAGGCCATGTTCTTTAGCAGCGTTTGTGGGAAAAGCGCCGCT
1 AAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT
* **
50774331 AAAGGTTATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCAACT
1 AAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT
* *
50774374 AAAGATCATGTTCTATAGCGGCGTTT
1 AAAGGTCATGTTCTTTAGCGGCGTTT
50774400 TTTTACATAA
Statistics
Matches: 97, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 97 1.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
AAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT
Found at i:50781208 original size:17 final size:18
Alignment explanation
Indices: 50781186--50781224 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
50781176 TGCGATGGCT
50781186 TGATATCG-ATGGATATA
1 TGATATCGTATGGATATA
* *
50781203 TGATATCGTATGTATATT
1 TGATATCGTATGGATATA
50781221 TGAT
1 TGAT
50781225 GGATGAACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.44
Consensus pattern (18 bp):
TGATATCGTATGGATATA
Found at i:50784416 original size:82 final size:81
Alignment explanation
Indices: 50784313--50784501 Score: 254
Period size: 82 Copynumber: 2.3 Consensus size: 81
50784303 ATTACCGTTG
* * * *
50784313 TTGCTTTACCTTTAGCAGCGTTTATGAGAAAAACGTTGCTATTACTTTACCTTTTGCAGCATTTA
1 TTGCTTTACCTTTTGCGGCGTTTATGAGAAAAACGTTGCTATTACTTTACCCTTTG-AGCAATTA
*
50784378 TGAG-AAAATGCCGCTA
65 TGAGAAAAACGCCGCTA
* * * *
50784394 TTGCTTTTACCTTTTGCGGCGTTTATGAGAAAAATGTTGCTATTGCTTTACCCTTTGTGGAATTA
1 TTGC-TTTACCTTTTGCGGCGTTTATGAGAAAAACGTTGCTATTACTTTACCCTTTGAGCAATTA
*
50784459 TGAGAAAAACGCTGCTA
65 TGAGAAAAACGCCGCTA
*
50784476 TTGCTTTACCTTTTGTGGCGTTTATG
1 TTGCTTTACCTTTTGCGGCGTTTATG
50784502 CAAAAAAGCA
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
81 34 0.36
82 61 0.64
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40
Consensus pattern (81 bp):
TTGCTTTACCTTTTGCGGCGTTTATGAGAAAAACGTTGCTATTACTTTACCCTTTGAGCAATTAT
GAGAAAAACGCCGCTA
Found at i:50784475 original size:40 final size:40
Alignment explanation
Indices: 50784333--50784493 Score: 180
Period size: 40 Copynumber: 4.0 Consensus size: 40
50784323 TTTAGCAGCG
* * * *
50784333 TTTATGAGAAAAACGTTGCTATTACTTTACCTTTTGCAGCA
1 TTTATGAGAAAAACGCTGCTATTGCTTTACCTTTTG-TGGA
* * * *
50784374 TTTATGAG-AAAATGCCGCTATTGCTTTTACCTTTTGCGGCG
1 TTTATGAGAAAAACGCTGCTATTGC-TTTACCTTTTGTGG-A
* * *
50784415 TTTATGAGAAAAATGTTGCTATTGCTTTACCCTTTGTGGA
1 TTTATGAGAAAAACGCTGCTATTGCTTTACCTTTTGTGGA
*
50784455 ATTATGAGAAAAACGCTGCTATTGCTTTACCTTTTGTGG
1 TTTATGAGAAAAACGCTGCTATTGCTTTACCTTTTGTGG
50784494 CGTTTATGCA
Statistics
Matches: 101, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
40 48 0.48
41 39 0.39
42 14 0.14
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (40 bp):
TTTATGAGAAAAACGCTGCTATTGCTTTACCTTTTGTGGA
Found at i:50784507 original size:40 final size:41
Alignment explanation
Indices: 50784313--50784501 Score: 220
Period size: 41 Copynumber: 4.6 Consensus size: 41
50784303 ATTACCGTTG
* * *
50784313 TTGCTTTACCTTTAGCAGCGTTTATGAGAAAAACGTTGCTA
1 TTGCTTTACCTTTTGCGGCGTTTATGAGAAAAACGCTGCTA
* * * * *
50784354 TTACTTTACCTTTTGCAGCATTTATGAG-AAAATGCCGCTA
1 TTGCTTTACCTTTTGCGGCGTTTATGAGAAAAACGCTGCTA
* *
50784394 TTGCTTTTACCTTTTGCGGCGTTTATGAGAAAAATGTTGCTA
1 TTGC-TTTACCTTTTGCGGCGTTTATGAGAAAAACGCTGCTA
* * **
50784436 TTGCTTTACCCTTTGTGG-AATTATGAGAAAAACGCTGCTA
1 TTGCTTTACCTTTTGCGGCGTTTATGAGAAAAACGCTGCTA
*
50784476 TTGCTTTACCTTTTGTGGCGTTTATG
1 TTGCTTTACCTTTTGCGGCGTTTATG
50784502 CAAAAAAGCA
Statistics
Matches: 125, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
40 47 0.38
41 64 0.51
42 14 0.11
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40
Consensus pattern (41 bp):
TTGCTTTACCTTTTGCGGCGTTTATGAGAAAAACGCTGCTA
Found at i:50792530 original size:22 final size:22
Alignment explanation
Indices: 50792503--50792622 Score: 65
Period size: 22 Copynumber: 5.4 Consensus size: 22
50792493 CATGCATTTG
50792503 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
50792525 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
50792548 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
***
50792572 -GTGATGAA-TATGAACAT-GC-AA
1 TGTGAT-AAGGCCG-A-ATGGCCAA
50792593 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
50792615 TGTGATAA
1 TGTGATAA
50792623 ATGTGAACAT
Statistics
Matches: 72, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
20 2 0.03
21 13 0.18
22 30 0.42
23 10 0.14
24 8 0.11
25 9 0.12
ACGTcount: A:0.34, C:0.13, G:0.29, T:0.23
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:50792617 original size:137 final size:138
Alignment explanation
Indices: 50792461--50792717 Score: 417
Period size: 137 Copynumber: 1.9 Consensus size: 138
50792451 ATATATGAGC
* * * *
50792461 TAAGGCCGAATGACAAATGTGATGAATGTGAACATGCATTTGTGTGATAAGGCCGAATGGCCAAT
1 TAAGGCCGAATGACAAATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAAT
* * *
50792526 GTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAA-GTGATGAATATGAACATG
66 GTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAATATGAACATG
50792590 CAATGTGA
131 CAATGTGA
* * *
50792598 TAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAAT
1 TAAGGCCGAATGACAAATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAAT
50792663 GTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAA
66 GTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAA
50792718 CGTGGAAGTG
Statistics
Matches: 109, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
137 101 0.93
138 8 0.07
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.25
Consensus pattern (138 bp):
TAAGGCCGAATGACAAATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAAT
GTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAATATGAACATG
CAATGTGA
Found at i:50792667 original size:22 final size:21
Alignment explanation
Indices: 50792590--50792714 Score: 65
Period size: 22 Copynumber: 5.4 Consensus size: 21
50792580 TATGAACATG
*
50792590 CAATGTGATAAGGCCGAATGGC
1 CAATGTGATAAGG-TGAATGGC
*
50792612 CAATGTGATAAATGTGAACAT-GC
1 CAATGTGAT-AAGGTG-A-ATGGC
*
50792635 ATATATGTGATAAGGTAGAATGGC
1 -CA-ATGTGATAAGGT-GAATGGC
*
50792659 CAATGTGATAAATGTGAACAT-GC
1 CAATGTGAT-AAGGTG-A-ATGGC
* *
50792682 ATATATGTGATAAGGCAGAATGGC
1 -CA-ATGTGATAAGG-TGAATGGC
50792706 CAATGTGAT
1 CAATGTGAT
50792715 GAACGTGGAA
Statistics
Matches: 79, Mismatches: 10, Indels: 28
0.68 0.09 0.24
Matches are distributed among these distances:
22 25 0.32
23 19 0.24
24 19 0.24
25 16 0.20
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.26
Consensus pattern (21 bp):
CAATGTGATAAGGTGAATGGC
Found at i:50792737 original size:47 final size:47
Alignment explanation
Indices: 50792430--50792717 Score: 395
Period size: 47 Copynumber: 6.2 Consensus size: 47
50792420 TTAGGATTTT
* ** * * * * *
50792430 ATGTGATGGATGTGAATGTGTATATATGAGCTAAGGCCGAATGACAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
50792477 ATGTGATGAATGTGAACATGCATTTGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
50792524 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
50792571 A-GTGATGAATATGAACATGC--A-ATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* **
50792614 ATGTGATAAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
50792661 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
50792708 ATGTGATGAA
1 ATGTGATGAA
50792718 CGTGGAAGTG
Statistics
Matches: 218, Mismatches: 19, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
43 22 0.10
44 18 0.08
46 19 0.09
47 159 0.73
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:50792784 original size:46 final size:46
Alignment explanation
Indices: 50792731--50792821 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
50792721 GGAAGTGTAT
* * *
50792731 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* * *
50792777 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
50792822 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.07, G:0.32, T:0.27
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:50801134 original size:9 final size:9
Alignment explanation
Indices: 50801120--50801146 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
50801110 AAATGGTATA
50801120 GATTAAATT
1 GATTAAATT
50801129 GATTAAATT
1 GATTAAATT
50801138 GATTAAATT
1 GATTAAATT
50801147 AAGTTTTGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (9 bp):
GATTAAATT
Found at i:50802202 original size:23 final size:23
Alignment explanation
Indices: 50802173--50802225 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
50802163 GTTCAATTAT
50802173 ATGTTCATGAACATATTTGTTTA
1 ATGTTCATGAACATATTTGTTTA
*
50802196 ATGTTCATGAACATGTTTGTTTA
1 ATGTTCATGAACATATTTGTTTA
50802219 ATGTTCA
1 ATGTTCA
50802226 CAAATATGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.47
Consensus pattern (23 bp):
ATGTTCATGAACATATTTGTTTA
Found at i:50802234 original size:23 final size:23
Alignment explanation
Indices: 50802173--50802242 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
50802163 GTTCAATTAT
** *
50802173 ATGTTCATGAACATATTTGTTTA
1 ATGTTCACAAACATGTTTGTTTA
**
50802196 ATGTTCATGAACATGTTTGTTTA
1 ATGTTCACAAACATGTTTGTTTA
* *
50802219 ATGTTCACAAATATGTTCGTTTA
1 ATGTTCACAAACATGTTTGTTTA
50802242 A
1 A
50802243 CTTAAACAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.30, C:0.10, G:0.14, T:0.46
Consensus pattern (23 bp):
ATGTTCACAAACATGTTTGTTTA
Found at i:50811686 original size:23 final size:23
Alignment explanation
Indices: 50811660--50811705 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
50811650 TTTAGTACTA
50811660 TGGTGCTCCTGAAA-CTAGCACTT
1 TGGTGCTCCT-AAATCTAGCACTT
*
50811683 TGGTGCTCCTAAATTTAGCACTT
1 TGGTGCTCCTAAATCTAGCACTT
50811706 ACGTGCTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (23 bp):
TGGTGCTCCTAAATCTAGCACTT
Found at i:50811711 original size:23 final size:23
Alignment explanation
Indices: 50811662--50811713 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
50811652 TAGTACTATG
**
50811662 GTGCTCCTGAAACTAGCACTTTG
1 GTGCTCCTGAAACTAGCACTTAC
*
50811685 GTGCTCCT-AAATTTAGCACTTAC
1 GTGCTCCTGAAA-CTAGCACTTAC
50811708 GTGCTC
1 GTGCTC
50811714 TTGTATTTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 3 0.12
23 22 0.88
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (23 bp):
GTGCTCCTGAAACTAGCACTTAC
Found at i:50826571 original size:166 final size:166
Alignment explanation
Indices: 50826297--50826629 Score: 621
Period size: 166 Copynumber: 2.0 Consensus size: 166
50826287 TTTGTTGGCT
* *
50826297 ATACTGACAGTGACTGGACTTGCTCGATGGATGACATGAAGAGCACCTCAAGGTATGTTTTCACC
1 ATACTGACAATGACTGGACTGGCTCGATGGATGACATGAAGAGCACCTCAAGGTATGTTTTCACC
*
50826362 CTTGGCTCAGCCATTTTTTGTTAGAGCTCGAAGAAACAAAATGTAGTTGCTTAGTCAACTGCTGA
66 CTTGGCTCAGCCATTTTTTGTTAGAGCTCAAAGAAACAAAATGTAGTTGCTTAGTCAACTGCTGA
50826427 GGCAGAGTATGTAGCAGCAGCTGGAGCTGTTAACCA
131 GGCAGAGTATGTAGCAGCAGCTGGAGCTGTTAACCA
*
50826463 ATACTGACAATGACTGGGCTGGCTCGATGGATGACATGAAGAGCACCTCAAGGTATGTTTTCACC
1 ATACTGACAATGACTGGACTGGCTCGATGGATGACATGAAGAGCACCTCAAGGTATGTTTTCACC
*
50826528 CTTGGCTCAGCCATTTTTTGTTAGAGCTCAAAGAAACAAAATGTAGTTTCTTAGTCAACTGCTGA
66 CTTGGCTCAGCCATTTTTTGTTAGAGCTCAAAGAAACAAAATGTAGTTGCTTAGTCAACTGCTGA
50826593 GGCAGAGTATGTAGCAGCAGCTGGAGCTGTTAACCA
131 GGCAGAGTATGTAGCAGCAGCTGGAGCTGTTAACCA
50826629 A
1 A
50826630 GCTGTGTGGC
Statistics
Matches: 162, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
166 162 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (166 bp):
ATACTGACAATGACTGGACTGGCTCGATGGATGACATGAAGAGCACCTCAAGGTATGTTTTCACC
CTTGGCTCAGCCATTTTTTGTTAGAGCTCAAAGAAACAAAATGTAGTTGCTTAGTCAACTGCTGA
GGCAGAGTATGTAGCAGCAGCTGGAGCTGTTAACCA
Found at i:50840203 original size:27 final size:26
Alignment explanation
Indices: 50840166--50840280 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
50840156 AGCATGGCTG
* *
50840166 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
50840192 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
50840220 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
50840247 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
50840274 CCAGAAC
1 CCAGAAC
50840281 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:50840225 original size:54 final size:54
Alignment explanation
Indices: 50840166--50840280 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
50840156 AGCATGGCTG
*
50840166 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
50840220 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
50840274 CCAGAAC
1 CCAGAAC
50840281 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:50841905 original size:26 final size:26
Alignment explanation
Indices: 50841867--50841950 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
50841857 CATGAAATTC
* *
50841867 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
50841893 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
50841919 TTATCATTGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
50841945 TTATCA
1 TTATCA
50841951 ATTTGTACCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.36
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:50845342 original size:27 final size:27
Alignment explanation
Indices: 50845311--50845488 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
50845301 TAAATTGTAC
50845311 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
50845338 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50845364 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
50845392 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
50845420 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50845447 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50845474 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50845489 GACTCAATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50845425 original size:82 final size:81
Alignment explanation
Indices: 50845312--50845467 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
50845302 AAATTGTACA
*
50845312 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
50845376 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50845393 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
50845458 TGCGAGTTGA
65 TGCGAATTGA
50845468 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50845479 original size:82 final size:81
Alignment explanation
Indices: 50845308--50845488 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
50845298 GATTAAATTG
*
50845308 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
50845373 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
50845389 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
50845453 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50845471 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50845489 GACTCAATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50849693 original size:37 final size:37
Alignment explanation
Indices: 50849633--50849708 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
50849623 TATTACGAAA
* * *
50849633 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
50849670 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
50849707 TC
1 TC
50849709 CTTAGAACTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:50850005 original size:49 final size:47
Alignment explanation
Indices: 50849829--50850171 Score: 497
Period size: 47 Copynumber: 7.2 Consensus size: 47
50849819 CCCTTCGGGA
* * * * * *
50849829 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
50849876 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
50849923 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50849970 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50850019 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50850066 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50850114 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50850163 CTTATCACA
1 CTTATCACA
50850172 ATTTAGAATT
Statistics
Matches: 267, Mismatches: 24, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
47 133 0.50
48 44 0.16
49 90 0.34
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50850139 original size:144 final size:143
Alignment explanation
Indices: 50849829--50850171 Score: 546
Period size: 144 Copynumber: 2.4 Consensus size: 143
50849819 CCCTTCGGGA
* * * * * * * *
50849829 CTTATCACAT-T-TATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATAC
* *
50849892 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAAGCCCTATCACACATATACACTTTCACATTCATCACA
50849957 TCGGCCATTAAGC
131 TCGGCCATTAAGC
*
50849970 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATAC
*
50850035 ACTTTCACATTCATCACATCGGCCATTAAGCCCTATTCACATATATACACTTTCACATTCATCAC
66 ACTTTCACATTCATCACATCGGCCATTAAGCCCTA-TCACACATATACACTTTCACATTCATCAC
*
50850100 ATCGGCCATTAGGC
130 ATCGGCCATTAAGC
50850114 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
50850172 ATTTAGAATT
Statistics
Matches: 185, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
141 10 0.05
142 1 0.01
143 77 0.42
144 97 0.52
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATAC
ACTTTCACATTCATCACATCGGCCATTAAGCCCTATCACACATATACACTTTCACATTCATCACA
TCGGCCATTAAGC
Found at i:50851857 original size:39 final size:39
Alignment explanation
Indices: 50851803--50851880 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
50851793 CTCTCCCTAA
*
50851803 ATCCAAATTCGGCATATTGAACAACCCAAATGCTAACCT
1 ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
*
50851842 ATCCAAGTTCGGCATATTCAACAACCCAAATGCTAACCT
1 ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
50851881 CAACGTTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.37, C:0.29, G:0.10, T:0.23
Consensus pattern (39 bp):
ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
Found at i:50858457 original size:16 final size:17
Alignment explanation
Indices: 50858438--50858494 Score: 66
Period size: 16 Copynumber: 3.5 Consensus size: 17
50858428 TAATAAGATT
50858438 TAATATTAAT-TTAATA
1 TAATATTAATATTAATA
* *
50858454 TAATATTTATCTTAATA
1 TAATATTAATATTAATA
*
50858471 -AATATT-ATATTAATT
1 TAATATTAATATTAATA
50858486 TAATATTAA
1 TAATATTAA
50858495 AGTTATTAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
15 7 0.20
16 21 0.60
17 7 0.20
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (17 bp):
TAATATTAATATTAATA
Found at i:50858480 original size:21 final size:20
Alignment explanation
Indices: 50858420--50858490 Score: 60
Period size: 21 Copynumber: 3.6 Consensus size: 20
50858410 ATAAACATTC
* *
50858420 TATTATTTTAATAAGATTTAA
1 TATTAATTTAATAA-ATATAA
50858441 TATTAA-TT--T-AATATAA
1 TATTAATTTAATAAATATAA
* *
50858457 TATTTATCTTAATAAATATTA
1 TATTAAT-TTAATAAATATAA
50858478 TATTAATTTAATA
1 TATTAATTTAATA
50858491 TTAAAGTTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
16 10 0.25
17 1 0.03
18 3 0.08
20 9 0.22
21 17 0.43
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (20 bp):
TATTAATTTAATAAATATAA
Found at i:50858488 original size:5 final size:6
Alignment explanation
Indices: 50858437--50858494 Score: 56
Period size: 5 Copynumber: 10.7 Consensus size: 6
50858427 TTAATAAGAT
* *
50858437 TTAATA TTAAT- TTAATA -TAATA TTTATC TTAATA --AATA TT-ATA
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA
50858480 TTAAT- TTAATA TTAA
1 TTAATA TTAATA TTAA
50858495 AGTTATTAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
4 4 0.10
5 20 0.48
6 18 0.43
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (6 bp):
TTAATA
Found at i:50860486 original size:20 final size:20
Alignment explanation
Indices: 50860453--50860496 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
50860443 CTCAATTATA
*
50860453 TCATATTAGCCATGATCCAT
1 TCATATTAGCCATGAGCCAT
*
50860473 TCAT-TTAGCACATGCGCCAT
1 TCATATTAGC-CATGAGCCAT
50860493 TCAT
1 TCAT
50860497 CACACATCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.34
Consensus pattern (20 bp):
TCATATTAGCCATGAGCCAT
Found at i:50875417 original size:93 final size:93
Alignment explanation
Indices: 50875258--50875428 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
50875248 GCCCATAAGT
*
50875258 GAACTCGGACTCAAATCAATGAGCTCGAGCATTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTCGAGCATTCACATCCATAAGTGAACTCGGACTCAACTCAA
50875323 CGAGTTTAGATGCCTAGTTACATTTCAC
66 CGAGTTTAGATGCCTAGTTACATTTCAC
* * *
50875351 GAACTCGGACTCAACTCAACGAGTTCG-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAAATCAACGAGCTCGAG-CATTCACATCCATAAGTGAACTCGGACTCAACTCA
*
50875415 ACGAGTTTGGATGC
65 ACGAGTTTAGATGC
50875429 TTAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAAATCAACGAGCTCGAGCATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTTAGATGCCTAGTTACATTTCAC
Found at i:50875418 original size:46 final size:46
Alignment explanation
Indices: 50875250--50875421 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
50875240 TGTAACCCGC
* * *
50875250 CCATAAGTGAACTCGGACTCAAATCAATGAGCTC-GAGCATTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCACAT
* *
50875296 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCG--GAC-A-TTCACAT
* * * *
50875346 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
50875389 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
50875422 TGGATGCTTA
Statistics
Matches: 102, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 57 0.56
47 24 0.24
48 2 0.02
49 1 0.01
50 6 0.06
51 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:50875444 original size:46 final size:46
Alignment explanation
Indices: 50875253--50875444 Score: 134
Period size: 46 Copynumber: 4.2 Consensus size: 46
50875243 AACCCGCCCA
* * * *
50875253 TAAGTGAACTCGGACTCAAATCAATGAG-CTCGA-GCATT-CACATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGC-TTAC-CATCC
* *
50875298 ATAAGTGAACTCGGACTCAACTCAACGAGTTTAGATGCCTAGTTA-CAT-T
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTTGGATG-C---TTACCATCC
* * *
50875347 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA--CATT-CGCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGC-TTAC-CATCC
50875391 ATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTTAACCATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTT-ACCATCC
50875439 T-AGTGA
1 TAAGTGA
50875445 CATGTCACTT
Statistics
Matches: 116, Mismatches: 15, Indels: 30
0.72 0.09 0.19
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 59 0.51
47 33 0.28
48 9 0.08
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTTACCATCC
Found at i:50875881 original size:30 final size:30
Alignment explanation
Indices: 50875847--50875906 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
50875837 ATTTAATACG
50875847 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
50875877 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
50875907 GACTCAGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:50877768 original size:20 final size:21
Alignment explanation
Indices: 50877743--50877782 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
50877733 CCTACAGTTT
50877743 TGAAAATTTTCAT-TGTTTTC
1 TGAAAATTTTCATATGTTTTC
*
50877763 TGAAAATTTTTATATGTTTT
1 TGAAAATTTTCATATGTTTT
50877783 TGATTTAGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.28, C:0.05, G:0.10, T:0.57
Consensus pattern (21 bp):
TGAAAATTTTCATATGTTTTC
Found at i:50884854 original size:28 final size:28
Alignment explanation
Indices: 50884819--50884883 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
50884809 ATTTACTAGA
*
50884819 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
50884847 ATGCCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
50884875 ATACCCCTA
1 ATACCCCTA
50884884 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:50885090 original size:29 final size:28
Alignment explanation
Indices: 50884989--50885079 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
50884979 AGGAAGCGTC
50884989 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
50885017 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
50885045 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
50885074 CTGGTG
1 CTGGTG
50885080 ACTCTGTCAC
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:50885104 original size:56 final size:55
Alignment explanation
Indices: 50884989--50885104 Score: 137
Period size: 56 Copynumber: 2.1 Consensus size: 55
50884979 AGGAAGCGTC
* *
50884989 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCAC-AATTATCTGTT
* * *
50885045 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACAATTATCTGT-T
50885101 CTGG
1 CTGG
50885105 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
55 9 0.17
56 29 0.56
57 14 0.27
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACAATTATCTGTT
Found at i:50895247 original size:50 final size:49
Alignment explanation
Indices: 50895078--50895305 Score: 166
Period size: 48 Copynumber: 4.7 Consensus size: 49
50895068 GGTATAGTGT
* * * * * * *
50895078 CGATGCCATGTCCCAGGCATGGTCTTACATTGGCTCATC--CATCAAGTC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCGAAACCGAGGC
*
50895126 C-ATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAACCGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAACCGAGGC
* * * * *
50895174 CGATGCCATGTCCTATACATGGTCTTACACT-AGCTCTCAGATATCC-ATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATC-GA-AACCGAGGC
* * * * *
50895224 CGATGCCCTGTCCCAGACGTGGTCTTACACTGAC-ACCTCTATA-C-ATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTA--TCGAAACCGAGGC
* *
50895272 AGATGTCATGTCCCAGACATGGTCTTACACTGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC
50895306 ACATCTCGTA
Statistics
Matches: 145, Mismatches: 26, Indels: 18
0.77 0.14 0.10
Matches are distributed among these distances:
46 3 0.02
47 30 0.21
48 42 0.29
49 31 0.21
50 33 0.23
51 6 0.04
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAACCGAGGC
Found at i:50895375 original size:46 final size:44
Alignment explanation
Indices: 50895222--50895486 Score: 142
Period size: 46 Copynumber: 5.7 Consensus size: 44
50895212 AGATATCCAT
* * * *
50895222 GCCGATGCCCTGTCCCAGACGTGGTCTTACACTGACACCTCT-ATACA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACACATCTCGT--A
*
50895269 TGCAGATGTCATGTCCCAGACATGGTCTTACACTGACACATCTCGTA
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACACATCTCGTA
* * * *
50895316 GCCAATGCGTGTCCCAGACATGTTTTACACTGGCTTACATCTCG-A
1 GCCGATGCATGTCCCAGACATGTCTTACACTGAC--ACATCTCGTA
* * * * * *
50895361 GACCGATGCATGTCCTAGACATGTCTCACACTAGCTCTCGTCTC-AA
1 G-CCGATGCATGTCCCAGACATGTCTTACACT-G-ACACATCTCGTA
** * * * *
50895407 TGGTGATGCCATGTCCCAGACATGGTCTTACATTGGATCTCATAAT-GTG
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACT-GA-CACAT-CTCGTA
*
50895456 GCTGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
50895487 AGCACAAAAA
Statistics
Matches: 172, Mismatches: 32, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
44 11 0.06
45 15 0.09
46 57 0.33
47 30 0.17
48 57 0.33
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACACATCTCGTA
Found at i:50895430 original size:47 final size:45
Alignment explanation
Indices: 50895365--50895489 Score: 128
Period size: 47 Copynumber: 2.7 Consensus size: 45
50895355 TCTCGAGACC
* * *
50895365 GATGCATGTCCTAGACATGTCTCACACTAGCTCTCGTCTCAA-TGG-T
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTC--AT-AAGTGGCT
* * *
50895411 GATGCCATGTCCCAGACATGGTCTTACATTGGATCTCATAATGTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAA-GTGGCT
50895459 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
50895490 ACAAAAATAA
Statistics
Matches: 65, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
45 2 0.03
46 15 0.23
47 30 0.46
48 18 0.28
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAGTGGCT
Found at i:50896756 original size:43 final size:42
Alignment explanation
Indices: 50896691--50896777 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 42
50896681 TGTTACAGGT
* *
50896691 ATCGTATTTGATTTCATGTAAGACC-CTGTCTGGGATAGTGGC
1 ATCGTATTTGATTACATGTAAGACCAC-GTCTGGGACAGTGGC
*
50896733 ATCGATATTTGATTACATGTAAGACCACGTCTGGGACATTGGC
1 ATCG-TATTTGATTACATGTAAGACCACGTCTGGGACAGTGGC
50896776 AT
1 AT
50896778 TGTACGAGCT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
42 4 0.10
43 35 0.88
44 1 0.03
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (42 bp):
ATCGTATTTGATTACATGTAAGACCACGTCTGGGACAGTGGC
Found at i:50905776 original size:9 final size:9
Alignment explanation
Indices: 50905762--50905787 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
50905752 ATGTATATAT
50905762 TTGAAATAC
1 TTGAAATAC
50905771 TTGAAATAC
1 TTGAAATAC
50905780 TTGAAATA
1 TTGAAATA
50905788 TGAATGTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.35
Consensus pattern (9 bp):
TTGAAATAC
Found at i:50905954 original size:23 final size:23
Alignment explanation
Indices: 50905917--50906063 Score: 111
Period size: 23 Copynumber: 6.3 Consensus size: 23
50905907 TCACCACAAC
** *
50905917 TCAGCTCATTGGAGCTTACCGAT
1 TCAGCTCATAAGAGCTTACCGTT
* *
50905940 TCAGCTCGTAAGAGCTTACTGTT
1 TCAGCTCATAAGAGCTTACCGTT
**
50905963 TCAGCTCATTGGAGCTTACCGTT
1 TCAGCTCATAAGAGCTTACCGTT
*
50905986 TCAGCTTGA-AAGAGCTTA-C-TAT
1 TCAGC-TCATAAGAGCTTACCGT-T
* *
50906008 TCAGCTCATTAGAGTTTACCGTT
1 TCAGCTCATAAGAGCTTACCGTT
* * * *
50906031 TTAGCTCATTAGAGCCTACTGTCT
1 TCAGCTCATAAGAGCTTACCGT-T
50906055 ATCAGCTCA
1 -TCAGCTCA
50906064 AGAGAAGCTT
Statistics
Matches: 97, Mismatches: 20, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
21 3 0.03
22 14 0.14
23 69 0.71
24 4 0.04
25 7 0.07
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (23 bp):
TCAGCTCATAAGAGCTTACCGTT
Found at i:50905970 original size:46 final size:46
Alignment explanation
Indices: 50905917--50906063 Score: 179
Period size: 46 Copynumber: 3.2 Consensus size: 46
50905907 TCACCACAAC
*
50905917 TCAGCTCATTGGAGCTTACCGATTCAGCTCGTAAGAGCTTACTGTT
1 TCAGCTCATTGGAGCTTACCGTTTCAGCTCGTAAGAGCTTACTGTT
* * *
50905963 TCAGCTCATTGGAGCTTACCGTTTCAGCTTGAAAGAGCTTACT-AT
1 TCAGCTCATTGGAGCTTACCGTTTCAGCTCGTAAGAGCTTACTGTT
* * * * * *
50906008 TCAGCTCATTAGAGTTTACCGTTTTAGCTCATTAGAGCCTACTGTCT
1 TCAGCTCATTGGAGCTTACCGTTTCAGCTCGTAAGAGCTTACTGT-T
50906055 ATCAGCTCA
1 -TCAGCTCA
50906064 AGAGAAGCTT
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
45 36 0.42
46 40 0.47
47 1 0.01
48 8 0.09
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (46 bp):
TCAGCTCATTGGAGCTTACCGTTTCAGCTCGTAAGAGCTTACTGTT
Found at i:50915786 original size:29 final size:29
Alignment explanation
Indices: 50915744--50915800 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
50915734 TTTATATGCT
*
50915744 TAGAAATCTTAATGAGTATATTTTTGATA
1 TAGAAACCTTAATGAGTATATTTTTGATA
50915773 TAGAAACCTTAATGAGTATATTTTTGAT
1 TAGAAACCTTAATGAGTATATTTTTGAT
50915801 TGGAATAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.37, C:0.05, G:0.14, T:0.44
Consensus pattern (29 bp):
TAGAAACCTTAATGAGTATATTTTTGATA
Found at i:50924533 original size:40 final size:40
Alignment explanation
Indices: 50924351--50924573 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
50924341 TCCTCGTTCA
* * * * *
50924351 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
50924390 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
50924430 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
50924470 AATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
50924510 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
50924550 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
50924574 CAGCATTCAA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 37 0.23
40 116 0.72
41 8 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:50924582 original size:41 final size:41
Alignment explanation
Indices: 50924505--50924582 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
50924495 TTAATATCTC
* * *
50924505 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
50924546 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
50924583 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:50932292 original size:40 final size:40
Alignment explanation
Indices: 50932194--50932362 Score: 223
Period size: 40 Copynumber: 4.2 Consensus size: 40
50932184 TCCTCGTTCA
* * * * *
50932194 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCAGATTTAATAACTCGCACG
* *
50932233 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCAGATTTAATAACTCGCACG
*
50932273 AATGCCTTCGGGACTTAACCCAGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCAGATTTAATAACTCGCACG
* * *
50932313 AATGCCTTCGGGACTTAACCCAGATTTAATATCTCGCACA
1 AATGCCTTCGGGACATAACCCAGATTTAATAACTCGCACG
*
50932353 AAGGCCTTCG
1 AATGCCTTCG
50932363 AATCTTAGTC
Statistics
Matches: 118, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 34 0.29
40 84 0.71
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCAGATTTAATAACTCGCACG
Found at i:50947550 original size:15 final size:15
Alignment explanation
Indices: 50947532--50947564 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
50947522 GAAGCCCAGA
50947532 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
50947547 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
50947562 ATA
1 ATA
50947565 CGAGAATCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.18
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:50950644 original size:51 final size:49
Alignment explanation
Indices: 50950549--50950726 Score: 216
Period size: 51 Copynumber: 3.6 Consensus size: 49
50950539 CTAGTACGCA
*
50950549 TAGTAGCCTGCACTTACTACTACACA--TGAACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGAA-CAATTATCCGGTACACG
* * * * *
50950597 TAGTAGCCTGCACTTAGTACTACACGCGTGATAGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-ACAA-TTATCCGGTACACG
* * *
50950648 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGAACAATTATCCGGTACACG
**
50950697 TAGTAGTTTGCACTTAGTACTACACACGTG
1 TAGTAGCCTGCACTTAGTACTACACACGTG
50950727 GCCTCACAAT
Statistics
Matches: 108, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
48 24 0.22
49 37 0.34
50 7 0.06
51 40 0.37
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGAACAATTATCCGGTACACG
Found at i:50950674 original size:99 final size:100
Alignment explanation
Indices: 50950542--50950726 Score: 318
Period size: 100 Copynumber: 1.9 Consensus size: 100
50950532 AGGCTATCTA
50950542 GTACGCATAGTAGCCTGCACTTACTACTACACATG-AACCAATTATCCGGTACACGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTACTACTACACATGCAACCAATTATCCGGTACACGTAGTAGCCT
*
50950606 GCACTTAGTACTACACGCGTGATAGAAGTTATCGG
66 GCACTTAGTACTACACACGTGATAGAAGTTATCGG
* * **
50950641 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGTTT
1 GTACGCATAGTAGCCTGCACTTACTACTACACATGCAACCAATTATCCGGTACACGTAGTAGCCT
50950706 GCACTTAGTACTACACACGTG
66 GCACTTAGTACTACACACGTG
50950727 GCCTCACAAT
Statistics
Matches: 80, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
99 34 0.43
100 46 0.57
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (100 bp):
GTACGCATAGTAGCCTGCACTTACTACTACACATGCAACCAATTATCCGGTACACGTAGTAGCCT
GCACTTAGTACTACACACGTGATAGAAGTTATCGG
Found at i:50957890 original size:41 final size:40
Alignment explanation
Indices: 50957843--50958090 Score: 210
Period size: 41 Copynumber: 6.1 Consensus size: 40
50957833 CGGAGTGTAA
* *
50957843 AGGGCACGTATTTGTAATTCAAGGGTACCAAAGTACAAAC
1 AGGGCACGTATGTGAAATTCAAGGGTACCAAAGTACAAAC
* ***
50957883 AGCGGCACGTATATGAAATTCAAGGGTATTGAAGTACAAAC
1 AG-GGCACGTATGTGAAATTCAAGGGTACCAAAGTACAAAC
* *
50957924 AGGGACACGCATGTGAAATTCAAGGGTACCAAAGTACAAAT
1 AGGG-CACGTATGTGAAATTCAAGGGTACCAAAGTACAAAC
* * *
50957965 AGGGGCACGTATGTGCAATTCAAAGGTACCGAAGTACAAAC
1 A-GGGCACGTATGTGAAATTCAAGGGTACCAAAGTACAAAC
** * * * * * * *
50958006 ACATGTACATATGTGCAATTTAGGGGTACCGAAGTACAAAT
1 A-GGGCACGTATGTGAAATTCAAGGGTACCAAAGTACAAAC
* * ** *
50958047 AGGGGCATGTATGT-ACAATTCAGGGGTACTGAAGTGCAAAC
1 A-GGGCACGTATGTGA-AATTCAAGGGTACCAAAGTACAAAC
50958088 AGG
1 AGG
50958091 TAATCACATA
Statistics
Matches: 168, Mismatches: 36, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
40 6 0.04
41 159 0.95
42 3 0.02
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21
Consensus pattern (40 bp):
AGGGCACGTATGTGAAATTCAAGGGTACCAAAGTACAAAC
Found at i:50957999 original size:82 final size:80
Alignment explanation
Indices: 50957858--50958090 Score: 268
Period size: 82 Copynumber: 2.9 Consensus size: 80
50957848 ACGTATTTGT
* * * * *
50957858 AATTCAAGGGTACCAAAGTACAAACAGCGGCACGTATATGAAATTCAAGGGTATTGAAGTACAAA
1 AATTCAAGGGTACCAAAGTACAAATAGGGGCACGTATGTGCAATTCAAGGGTACTGAAGTACAAA
50957923 CAGGGACACGCATGTGA
66 CAGGGACA--CATGTGA
* *
50957940 AATTCAAGGGTACCAAAGTACAAATAGGGGCACGTATGTGCAATTCAAAGGTACCGAAGTACAAA
1 AATTCAAGGGTACCAAAGTACAAATAGGGGCACGTATGTGCAATTCAAGGGTACTGAAGTAC-AA
* * * *
50958005 CACATGTACATATGTGC
65 -ACAGGGACACATGTGA
* * * * * * *
50958022 AATTTAGGGGTACCGAAGTACAAATAGGGGCATGTATGTACAATTCAGGGGTACTGAAGTGCAAA
1 AATTCAAGGGTACCAAAGTACAAATAGGGGCACGTATGTGCAATTCAAGGGTACTGAAGTACAAA
50958087 CAGG
66 CAGG
50958091 TAATCACATA
Statistics
Matches: 128, Mismatches: 21, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
80 4 0.03
81 2 0.02
82 113 0.88
83 2 0.02
84 7 0.05
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.20
Consensus pattern (80 bp):
AATTCAAGGGTACCAAAGTACAAATAGGGGCACGTATGTGCAATTCAAGGGTACTGAAGTACAAA
CAGGGACACATGTGA
Found at i:50959918 original size:19 final size:19
Alignment explanation
Indices: 50959894--50959931 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
50959884 AAATGGGATA
50959894 GAGTGAAGATGGATTTTGT
1 GAGTGAAGATGGATTTTGT
*
50959913 GAGTGACGATGGATTTTGT
1 GAGTGAAGATGGATTTTGT
50959932 TTCGAGTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.03, G:0.37, T:0.37
Consensus pattern (19 bp):
GAGTGAAGATGGATTTTGT
Found at i:50962306 original size:44 final size:42
Alignment explanation
Indices: 50962233--50962372 Score: 131
Period size: 44 Copynumber: 3.3 Consensus size: 42
50962223 ATGTGTTTTT
* ** **
50962233 GTGTAAGACCATGCCTAGGATGTTGGCATCG-ACTTATGATTTAC
1 GTGTAAGACCATGCCTGGGACATCAGCATCGTA-TT-TGATTT-C
50962277 GTGTAAGACCATGCCTGGGACATCAGCATCGTATTTGATTTC
1 GTGTAAGACCATGCCTGGGACATCAGCATCGTATTTGATTTC
* * * *
50962319 GTGTAAGACCCTGTCTGGGACAGT-GGCATCGATATTTGATTAC
1 GTGTAAGACCATGCCTGGGACA-TCAGCATCG-TATTTGATTTC
*
50962362 ATGTAAGACCA
1 GTGTAAGACCA
50962373 CGTCTAGGAT
Statistics
Matches: 82, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
42 27 0.33
43 26 0.32
44 28 0.34
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATGCCTGGGACATCAGCATCGTATTTGATTTC
Found at i:50962355 original size:43 final size:42
Alignment explanation
Indices: 50962219--50962372 Score: 141
Period size: 43 Copynumber: 3.6 Consensus size: 42
50962209 ACATAGAATC
* * * * **
50962219 CGATATGTGTTTTTGTGTAAGACCATGCCTAGGATGTTGGCAT
1 CGATATTTGATTTCGTGTAAGACCATGCCTGGGA-CATGGCAT
* *
50962262 CGACT-TATGATTTACGTGTAAGACCATGCCTGGGACATCAGCAT
1 CGA-TATTTGATTT-CGTGTAAGACCATGCCTGGGACAT-GGCAT
* *
50962306 CG-TATTTGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCAT
1 CGATATTTGATTTCGTGTAAGACCATGCCTGGGACA-TGGCAT
* *
50962348 CGATATTTGATTACATGTAAGACCA
1 CGATATTTGATTTCGTGTAAGACCA
50962373 CGTCTAGGAT
Statistics
Matches: 91, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
42 28 0.31
43 37 0.41
44 26 0.29
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
CGATATTTGATTTCGTGTAAGACCATGCCTGGGACATGGCAT
Found at i:50962389 original size:43 final size:43
Alignment explanation
Indices: 50962233--50962390 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 43
50962223 ATGTGTTTTT
* *
50962233 GTGTAAGACCATGCCTAGGATGTTGGCATCGACT-TATGATTTAC
1 GTGTAAGACCACGCCTAGGATGTTGGCATCGA-TATTTGA-TTAC
* * ** ** *
50962277 GTGTAAGACCATGCCTGGGACATCAGCATCG-TATTTGATTTC
1 GTGTAAGACCACGCCTAGGATGTTGGCATCGATATTTGATTAC
* * *
50962319 GTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTAC
1 GTGTAAGACCAC-GCCTAGGA-TGTTGGCATCGATATTTGATTAC
* *
50962362 ATGTAAGACCACGTCTAGGATGTTGGCAT
1 GTGTAAGACCACGCCTAGGATGTTGGCAT
50962391 TGTACTGGCT
Statistics
Matches: 91, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
42 28 0.31
43 36 0.40
44 27 0.30
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCACGCCTAGGATGTTGGCATCGATATTTGATTAC
Found at i:50965250 original size:24 final size:24
Alignment explanation
Indices: 50965190--50965255 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
50965180 TATGACCCAT
*
50965190 AGCTCGTGAGAGCATACCGATTAT
1 AGCTCGTGAGAGCATACCGATTAC
* *
50965214 AGATTC-TGAGAGCATACTGATTAC
1 AG-CTCGTGAGAGCATACCGATTAC
*
50965238 AGCTCGTGTGAGCATACC
1 AGCTCGTGAGAGCATACC
50965256 TGTACAGGAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
23 2 0.06
24 30 0.88
25 2 0.06
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AGCTCGTGAGAGCATACCGATTAC
Found at i:50967571 original size:40 final size:40
Alignment explanation
Indices: 50967420--50967564 Score: 154
Period size: 40 Copynumber: 3.6 Consensus size: 40
50967410 TGAATGATGT
* * *
50967420 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
* * *
50967459 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
*
50967500 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-A
*
50967540 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
50967565 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 3 0.03
40 75 0.85
41 10 0.11
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:50967583 original size:80 final size:80
Alignment explanation
Indices: 50967419--50967570 Score: 191
Period size: 80 Copynumber: 1.9 Consensus size: 80
50967409 TTGAATGATG
* *
50967419 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
50967484 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
50967499 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
50967562 TTGAACGAG
64 TTGAACGAG
50967571 TAGCTATATC
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
79 1 0.02
80 53 0.87
81 7 0.11
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:50976772 original size:44 final size:43
Alignment explanation
Indices: 50976705--50976835 Score: 160
Period size: 44 Copynumber: 3.0 Consensus size: 43
50976695 GTTGGTATTA
* *
50976705 ATCT-AAATTTTTGTGTAAGACCGTGTCTAGGACATAGGCATCG
1 ATCTGAAA-TTTTGTGTAAGACCGTGTCTGGGACACAGGCATCG
*
50976748 ATTTGAAATTTTCGTGTAAGACCGTGTCTGGGACACAGGCATCG
1 ATCTGAAATTTT-GTGTAAGACCGTGTCTGGGACACAGGCATCG
* * *
50976792 TATCTG--ATTTTGTATAAGACCTTGTCTGGGACAGAGGCATCG
1 -ATCTGAAATTTTGTGTAAGACCGTGTCTGGGACACAGGCATCG
50976834 AT
1 AT
50976836 ATAGAATTAC
Statistics
Matches: 78, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
41 2 0.03
42 28 0.36
43 12 0.15
44 32 0.41
45 4 0.05
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
ATCTGAAATTTTGTGTAAGACCGTGTCTGGGACACAGGCATCG
Found at i:50978882 original size:24 final size:24
Alignment explanation
Indices: 50978834--50978898 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
50978824 ATTCCAACCC
* **
50978834 ATAGCTTGTGAGAGCATACTGATT
1 ATAGCTCGTGAGAGCATACCAATT
*
50978858 ATAGCTCGTGAGAGCTTACCAATT
1 ATAGCTCGTGAGAGCATACCAATT
* *
50978882 ACAGCTCGTGTGAGCAT
1 ATAGCTCGTGAGAGCAT
50978899 TCATCTATAG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (24 bp):
ATAGCTCGTGAGAGCATACCAATT
Found at i:50980976 original size:27 final size:27
Alignment explanation
Indices: 50980946--50981124 Score: 268
Period size: 27 Copynumber: 6.6 Consensus size: 27
50980936 ATATTAAGTC
* *
50980946 CGCACACTCAGTGCTATATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
50980973 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
50981001 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
50981028 CGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
50981055 CGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
50981082 CGCACACTTAGTGCTACATAGTCCAACT
1 CGCACACTTAGTGCTACATAGT-CAACT
50981110 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50981125 GTACAATTTA
Statistics
Matches: 142, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
27 97 0.68
28 45 0.32
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:50981113 original size:82 final size:82
Alignment explanation
Indices: 50980946--50981123 Score: 268
Period size: 82 Copynumber: 2.2 Consensus size: 82
50980936 ATATTAAGTC
* * * *
50980946 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCAACATAGTCAACTCGCACACTTAGTGCAACATAATCAAACTCGCACACTTA
*
50981011 GTGCTACATAGTCAATT
66 GTGCTACATAGTCAACT
* * *
50981028 CGCACACTTAGTGCAACATAGTCAATTCGCACACTTAGTGCAACATAGTC-AATTCGCACACTTA
1 CGCACACTTAGTGCAACATAGTCAACTCGCACACTTAGTGCAACATAATCAAACTCGCACACTTA
50981092 GTGCTACATAGTCCAACT
66 GTGCTACATAGT-CAACT
50981110 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50981124 TGTACAATTT
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
81 25 0.29
82 62 0.71
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (82 bp):
CGCACACTTAGTGCAACATAGTCAACTCGCACACTTAGTGCAACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAACT
Found at i:50989132 original size:27 final size:27
Alignment explanation
Indices: 50989102--50989279 Score: 268
Period size: 27 Copynumber: 6.6 Consensus size: 27
50989092 ATATTAAGTC
* *
50989102 CGCACACTCAGTGCTATATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
50989129 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
50989157 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
*
50989184 CGCACACTTAGTGC-ACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
50989210 CGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
50989237 CGCACACTTAGTGCTACATAGTCCAACT
1 CGCACACTTAGTGCTACATAGT-CAACT
50989265 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50989280 GTACAATTTA
Statistics
Matches: 141, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
26 26 0.18
27 70 0.50
28 45 0.32
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:50989170 original size:55 final size:54
Alignment explanation
Indices: 50989102--50989279 Score: 277
Period size: 55 Copynumber: 3.3 Consensus size: 54
50989092 ATATTAAGTC
* * * *
50989102 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGTC-AACT
*
50989157 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGC-ACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGTCAACT
*
50989210 CGCACACTTAGTGCAACATAGTCAATTCGCACACTTAGTGCTACATAGTCCAACT
1 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGT-CAACT
50989265 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50989280 GTACAATTTA
Statistics
Matches: 113, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
53 43 0.38
54 14 0.12
55 56 0.50
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGTCAACT
Found at i:50989807 original size:21 final size:21
Alignment explanation
Indices: 50989775--50989817 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
50989765 TTGGTCATCA
*
50989775 TTTTGTCATTCA-ACACATTT
1 TTTTGTCATTCATAAACATTT
*
50989795 TTTTTTCACTTCATAAACATTT
1 TTTTGTCA-TTCATAAACATTT
50989817 T
1 T
50989818 GACCGTATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 4 0.21
22 8 0.42
ACGTcount: A:0.26, C:0.19, G:0.02, T:0.53
Consensus pattern (21 bp):
TTTTGTCATTCATAAACATTT
Found at i:50992093 original size:46 final size:46
Alignment explanation
Indices: 50992043--50992168 Score: 180
Period size: 46 Copynumber: 2.7 Consensus size: 46
50992033 TGGTTGAGCA
* * *
50992043 TCCGAATTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
50992089 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
50992135 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
50992169 GGGACGGTTA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:50992429 original size:19 final size:20
Alignment explanation
Indices: 50992392--50992429 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
50992382 ATAAGGTGGT
50992392 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
50992412 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
50992430 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:50998813 original size:19 final size:20
Alignment explanation
Indices: 50998776--50998813 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
50998766 ATAAGGTGGT
50998776 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
50998796 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
50998814 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:51012739 original size:64 final size:64
Alignment explanation
Indices: 51012638--51012766 Score: 249
Period size: 64 Copynumber: 2.0 Consensus size: 64
51012628 TATGGATAAG
*
51012638 AAAGTCAAGTCAGAGGTCCTACAACCCCTCCCCCTTACCAAAGTGGTACTTATAATGGAATTTC
1 AAAGTCAAGTCAGAAGTCCTACAACCCCTCCCCCTTACCAAAGTGGTACTTATAATGGAATTTC
51012702 AAAGTCAAGTCAGAAGTCCTACAACCCCTCCCCCTTACCAAAGTGGTACTTATAATGGAATTTC
1 AAAGTCAAGTCAGAAGTCCTACAACCCCTCCCCCTTACCAAAGTGGTACTTATAATGGAATTTC
51012766 A
1 A
51012767 TGAGATTTGT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.25
Consensus pattern (64 bp):
AAAGTCAAGTCAGAAGTCCTACAACCCCTCCCCCTTACCAAAGTGGTACTTATAATGGAATTTC
Found at i:51013569 original size:30 final size:28
Alignment explanation
Indices: 51013535--51013590 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 28
51013525 CATAGTATCG
51013535 TATCTTTGG-TTTCTTTATTCTGGATTTCTC
1 TATC-TTGGATTTCTTTATT-TGG-TTTCTC
51013565 TATCTTGGATTTCTTTATTTGGTTTC
1 TATCTTGGATTTCTTTATTTGGTTTC
51013591 CTTGTTATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 4 0.16
29 7 0.28
30 14 0.56
ACGTcount: A:0.11, C:0.14, G:0.14, T:0.61
Consensus pattern (28 bp):
TATCTTGGATTTCTTTATTTGGTTTCTC
Found at i:51013573 original size:15 final size:14
Alignment explanation
Indices: 51013539--51013590 Score: 54
Period size: 15 Copynumber: 3.7 Consensus size: 14
51013529 GTATCGTATC
*
51013539 TTTGG-TTTCTTTA
1 TTTGGATTTCTCTA
51013552 TTCTGGATTTCTCTA
1 TT-TGGATTTCTCTA
*
51013567 TCTTGGATTTCTTTA
1 T-TTGGATTTCTCTA
51013582 TTTGG-TTTC
1 TTTGGATTTC
51013591 CTTGTTATCT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
13 6 0.18
14 7 0.21
15 20 0.59
16 1 0.03
ACGTcount: A:0.10, C:0.13, G:0.15, T:0.62
Consensus pattern (14 bp):
TTTGGATTTCTCTA
Found at i:51015999 original size:45 final size:46
Alignment explanation
Indices: 51015950--51016120 Score: 192
Period size: 45 Copynumber: 3.7 Consensus size: 46
51015940 TGGTTGAGCA
51015950 TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
51015995 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
51016040 CATCCGAACTCGTTGAGTT-AGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
51016087 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
51016121 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 11, Indels: 21
0.76 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 39 0.38
46 34 0.33
47 20 0.19
49 3 0.03
50 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51016104 original size:92 final size:92
Alignment explanation
Indices: 51015947--51016115 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
51015937 GGATGGTTGA
* *
51015947 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
51016012 GAGTCCGAGTTCGTGAAATGTAACTAG
66 GAGTCCGAGTTCGTGAAATGTAACTAG
*
51016039 GCATCCGAACTCGTTGAGTT-AGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51016103 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
51016116 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 3 0.04
92 70 0.96
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:51019093 original size:15 final size:15
Alignment explanation
Indices: 51019070--51019114 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
51019060 GTATCGTATC
*
51019070 TTGGGTTTCTTTATT
1 TTGGATTTCTTTATT
* *
51019085 TTGGATTTCTCTATC
1 TTGGATTTCTTTATT
51019100 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
51019115 CGATTTCCTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.11, C:0.11, G:0.16, T:0.62
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:51021572 original size:46 final size:46
Alignment explanation
Indices: 51021520--51021692 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 46
51021510 TGGTTGAGCA
51021520 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * * * * *
51021566 TTCGAACTCGTTAAGTTGAGTCCGAGTTC-GTGA--AATGT-AACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* * * *
51021611 CATCCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
51021659 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTA
51021693 GGGGCGGGTT
Statistics
Matches: 100, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 56 0.56
47 26 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:51021676 original size:93 final size:93
Alignment explanation
Indices: 51021517--51021687 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
51021507 GGATGGTTGA
* * ** *
51021517 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTTCGAACTCGTTAAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTAAGT
51021582 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * *
51021610 GCATCCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTAAGT
51021675 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
51021688 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTAAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:51025185 original size:68 final size:67
Alignment explanation
Indices: 51025038--51025193 Score: 154
Period size: 68 Copynumber: 2.3 Consensus size: 67
51025028 AGCCGATTTG
* * * * *
51025038 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACAT-G-ATCACACATGCGACCTAGCTACACT
*
51025103 TATC
64 TATA
* *
51025107 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATCCCAT-ATCACACATGTGACCTAGCTACTA
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACATGATCACACATGCGACCTAGCTAC-A
51025170 CTTAGTA
62 CTTA-TA
*
51025177 TCTCGTAGCTTTCTTGT
1 TCTCGTAGCTCTCTTGT
51025194 ACACATGATG
Statistics
Matches: 73, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
68 33 0.45
69 7 0.10
70 5 0.07
71 28 0.38
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (67 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACATGATCACACATGCGACCTAGCTACACTTA
TA
Found at i:51031423 original size:41 final size:39
Alignment explanation
Indices: 51031366--51031536 Score: 171
Period size: 41 Copynumber: 4.2 Consensus size: 39
51031356 ATCTGAGTGT
51031366 AAACAGGGGCACATATATGCAATTTAGAGGTATCGAAGTAC
1 AAACAGGGGCACATATATGCAATTTAG-GGTA-CGAAGTAC
*
51031407 AAACAGGGGTACATATATGCAATTTAGGGATACCGAAGTAC
1 AAACAGGGGCACATATATGCAATTTAGGG-TA-CGAAGTAC
* * * *
51031448 AAACAAGGGCACGTATGTGCAATTTAGGGGTACTAAAGTAC
1 AAACAGGGGCACATATATGCAATTTA-GGGTAC-GAAGTAC
** * * * *
51031489 AAACAGGGGCATGTATGTGCGATTCAGGGGTACCAAAGTAC
1 AAACAGGGGCACATATATGCAATTTA-GGGTA-CGAAGTAC
51031530 AAACAGG
1 AAACAGG
51031537 TAATCACAAA
Statistics
Matches: 115, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
40 3 0.03
41 108 0.94
42 4 0.03
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.20
Consensus pattern (39 bp):
AAACAGGGGCACATATATGCAATTTAGGGTACGAAGTAC
Found at i:51031528 original size:82 final size:82
Alignment explanation
Indices: 51031366--51031534 Score: 205
Period size: 82 Copynumber: 2.1 Consensus size: 82
51031356 ATCTGAGTGT
* * *
51031366 AAACAGGGGCACATATATGCAATTTAGAGGTATCGAAGTACAAACAGGGGTACATATATGCAATT
1 AAACAAGGGCACATATATGCAATTTAGAGGTATCAAAGTACAAACAGGGGCACATATATGCAATT
* *
51031431 TAGGGATACCGAAGTAC
66 CAGGGATACCAAAGTAC
* * * ** * *
51031448 AAACAAGGGCACGTATGTGCAATTTAGGGGTA-CTAAAGTACAAACAGGGGCATGTATGTGCGAT
1 AAACAAGGGCACATATATGCAATTTAGAGGTATC-AAAGTACAAACAGGGGCACATATATGCAAT
*
51031512 TCAGGGGTACCAAAGTAC
65 TCAGGGATACCAAAGTAC
51031530 AAACA
1 AAACA
51031535 GGTAATCACA
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 1 0.01
82 72 0.99
ACGTcount: A:0.38, C:0.15, G:0.26, T:0.21
Consensus pattern (82 bp):
AAACAAGGGCACATATATGCAATTTAGAGGTATCAAAGTACAAACAGGGGCACATATATGCAATT
CAGGGATACCAAAGTAC
Found at i:51039598 original size:24 final size:23
Alignment explanation
Indices: 51039521--51039636 Score: 164
Period size: 23 Copynumber: 5.0 Consensus size: 23
51039511 AAGAAGTGAA
51039521 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
51039543 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
51039566 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
51039589 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
*
51039613 CAAAGAGGC-TAGGCCTCCAGTTAT
1 -AAAG-GGCTTATGCC-CCAGTTAT
51039637 ATGATAAAGT
Statistics
Matches: 86, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
22 12 0.14
23 33 0.38
24 30 0.35
25 11 0.13
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:51039605 original size:47 final size:47
Alignment explanation
Indices: 51039521--51039636 Score: 166
Period size: 47 Copynumber: 2.5 Consensus size: 47
51039511 AAGAAGTGAA
51039521 AAAGGGCTTATG-CCCAGTTATTAAAGGGCTTATGCCCCAGTTATT-
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTC
*
51039566 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATTC
1 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATTC
*
51039614 AAAGAGGC-TAGGCCTCCAGTTAT
1 AAAG-GGCTTATGCC-CCAGTTAT
51039637 ATGATAAAGT
Statistics
Matches: 64, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
45 12 0.19
46 10 0.16
47 22 0.34
48 9 0.14
49 11 0.17
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTC
Found at i:51039865 original size:31 final size:31
Alignment explanation
Indices: 51039830--51039893 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
51039820 CGTTTACAGT
51039830 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
51039861 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
51039892 AA
1 AA
51039894 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:51047472 original size:20 final size:20
Alignment explanation
Indices: 51047447--51047514 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
51047437 GATTTTGATA
*
51047447 AACATGGTATGTATGATATG
1 AACATGATATGTATGATATG
*
51047467 AACATGACATGTATGATATG
1 AACATGATATGTATGATATG
*
51047487 CACATGATATGTATGATATG
1 AACATGATATGTATGATATG
*
51047507 CACATGAT
1 AACATGAT
51047515 GTAATCATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.32
Consensus pattern (20 bp):
AACATGATATGTATGATATG
Found at i:51047620 original size:24 final size:24
Alignment explanation
Indices: 51047564--51047658 Score: 122
Period size: 24 Copynumber: 4.0 Consensus size: 24
51047554 GAGGAAGTGA
51047564 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
51047588 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
51047611 AAAAGGGCTTTTGGCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
51047635 CAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
51047659 ATGATAAAGC
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
23 23 0.37
24 28 0.45
25 11 0.18
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:51047633 original size:47 final size:49
Alignment explanation
Indices: 51047564--51047658 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
51047554 GAGGAAGTGA
*
51047564 AAAAGGGCTTATGCCCCAGTTATT-AAAG-GGCTTATGCC-CCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTCAAAGAGGC-TAGGCCTCCAGTTATT
* *
51047611 AAAAGGGCTTTTGGCCCAGTTATTCAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATTCAAAGAGGCTAGGCCTCCAGTTAT
51047659 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
47 22 0.52
48 9 0.21
49 11 0.26
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTATTCAAAGAGGCTAGGCCTCCAGTTATT
Done.