Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 155 of 344
Found at i:51610251 original size:5 final size:5
Alignment explanation
Indices: 51610241--51610267 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
51610231 ATGAAATAAT
51610241 AAACA AAACA AAACA AAACA AAACA AA
1 AAACA AAACA AAACA AAACA AAACA AA
51610268 TAAAATCTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.19, G:0.00, T:0.00
Consensus pattern (5 bp):
AAACA
Found at i:51612958 original size:28 final size:28
Alignment explanation
Indices: 51612904--51612959 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
51612894 CTAATGCCTC
***
51612904 AATTATTAATACCATTATTATTTAATTT
1 AATTATTAATACCATTATTAACAAATTT
* *
51612932 AATTATTATTATCATTATTAACAAATTT
1 AATTATTAATACCATTATTAACAAATTT
51612960 TTTATTTTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (28 bp):
AATTATTAATACCATTATTAACAAATTT
Found at i:51622790 original size:27 final size:28
Alignment explanation
Indices: 51622753--51622892 Score: 175
Period size: 27 Copynumber: 5.2 Consensus size: 28
51622743 AGCATGGCTG
* *
51622753 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
51622779 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
51622807 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
51622834 CCAGAT-CAGATATTTGTGGTAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
51622861 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
51622888 CCAGA
1 CCAGA
51622893 ACGCTTCCTT
Statistics
Matches: 104, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
26 5 0.05
27 82 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:51624548 original size:26 final size:26
Alignment explanation
Indices: 51624512--51624621 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
51624502 CATGAAATTC
51624512 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
51624538 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
51624564 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
51624590 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
51624616 TTATCA
1 TTATCA
51624622 ATTTGTACCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:51629367 original size:21 final size:21
Alignment explanation
Indices: 51629343--51629382 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
51629333 TCACACAGGC
*
51629343 GTGTGCCTTAGTCACACGGTT
1 GTGTGCCTTAGCCACACGGTT
**
51629364 GTGTTTCTTAGCCACACGG
1 GTGTGCCTTAGCCACACGG
51629383 GCATGTAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.15, C:0.25, G:0.28, T:0.33
Consensus pattern (21 bp):
GTGTGCCTTAGCCACACGGTT
Found at i:51632986 original size:40 final size:40
Alignment explanation
Indices: 51632895--51633064 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
51632885 TCCTCGTTCA
* * * * *
51632895 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
51632934 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
51632974 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
51633014 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
51633054 AAGGCCTTCGG
1 AATGCCTTCGG
51633065 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:51644270 original size:49 final size:49
Alignment explanation
Indices: 51644196--51644339 Score: 180
Period size: 51 Copynumber: 2.9 Consensus size: 49
51644186 GCCGAAGCTA
* *
51644196 TCTGGTACGCATAGTAGCCTACACTTAGTACTACAAATGCGACCAATAG
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAG
* * * * * **
51644245 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATAG
*
51644296 TCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
51644340 TCACAATAGA
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
49 37 0.47
50 2 0.03
51 40 0.51
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAG
Found at i:51649429 original size:41 final size:41
Alignment explanation
Indices: 51649384--51649529 Score: 204
Period size: 41 Copynumber: 3.6 Consensus size: 41
51649374 AAATCCTAGT
* * * *
51649384 ATAATACACCGGCACAGAGCCTGCTAGGCAATAGGCCTGAA
1 ATAATACACCGGCATAAAGCCTGCTAGCCAATAAGCCTGAA
51649425 ATAATACACCGGCATAAAGCCTGCTAGCCAATAAGCCT-AA
1 ATAATACACCGGCATAAAGCCTGCTAGCCAATAAGCCTGAA
* *
51649465 TATAATTCACCGGCATAAAGCCTGCTAGCCAATAAGCCTGAT
1 -ATAATACACCGGCATAAAGCCTGCTAGCCAATAAGCCTGAA
* *
51649507 ATAATTCACCGACATAAAGCCTG
1 ATAATACACCGGCATAAAGCCTG
51649530 AATATCATTG
Statistics
Matches: 96, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
40 2 0.02
41 93 0.97
42 1 0.01
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.19
Consensus pattern (41 bp):
ATAATACACCGGCATAAAGCCTGCTAGCCAATAAGCCTGAA
Found at i:51664696 original size:27 final size:27
Alignment explanation
Indices: 51664666--51664765 Score: 107
Period size: 27 Copynumber: 3.7 Consensus size: 27
51664656 CTGATTGATG
*
51664666 AAAATGA-TAATTTTGCCCTTATGTGGT
1 AAAATGACT-ATTTTGCCCTTATATGGT
51664693 AAAATGACTATTTTGCCCTTATATGGT
1 AAAATGACTATTTTGCCCTTATATGGT
** *
51664720 AAAAT-ACTGA-AATGCCCTTACATGGT
1 AAAATGACT-ATTTTGCCCTTATATGGT
*
51664746 AAATTGACTATTTTGTCCCT
1 AAAATGACTATTTTG-CCCT
51664766 ATGTGATATA
Statistics
Matches: 61, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
26 21 0.34
27 35 0.57
28 5 0.08
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (27 bp):
AAAATGACTATTTTGCCCTTATATGGT
Found at i:51665107 original size:18 final size:18
Alignment explanation
Indices: 51665084--51665118 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51665074 ATTACATATC
51665084 TGCACTAATTACTGTTAT
1 TGCACTAATTACTGTTAT
**
51665102 TGCACTGGTTACTGTTA
1 TGCACTAATTACTGTTA
51665119 CTACAATAGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (18 bp):
TGCACTAATTACTGTTAT
Found at i:51670695 original size:26 final size:26
Alignment explanation
Indices: 51670659--51670721 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
51670649 ATAGATAACA
*
51670659 AAAGCCTTTGTGGCGCAATATGAAAG
1 AAAGCCTTTGTGGCGCAATACGAAAG
* *
51670685 AAAGTCTTTGTGGCGTAATACGAAAG
1 AAAGCCTTTGTGGCGCAATACGAAAG
*
51670711 AATGCCTTTGT
1 AAAGCCTTTGT
51670722 AGAAAACTCC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
AAAGCCTTTGTGGCGCAATACGAAAG
Found at i:51677134 original size:28 final size:28
Alignment explanation
Indices: 51677102--51677161 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
51677092 ACCTCGAAGA
* *
51677102 ATAAGTAAGAAAATTCGTATCATTGTTG
1 ATAAGTAAGAAAATTCATATCATTATTG
*
51677130 ATAAGTAAGGAAATTCATATCATTATTG
1 ATAAGTAAGAAAATTCATATCATTATTG
51677158 ATAA
1 ATAA
51677162 ATATTGGTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.43, C:0.07, G:0.15, T:0.35
Consensus pattern (28 bp):
ATAAGTAAGAAAATTCATATCATTATTG
Found at i:51682220 original size:25 final size:25
Alignment explanation
Indices: 51682118--51682222 Score: 72
Period size: 25 Copynumber: 4.1 Consensus size: 25
51682108 CGTAATTTGA
*
51682118 AAGAAAGCTTTTGTGGCGTAATATT
1 AAGAAAGCTTTTGTGGCATAATATT
* *
51682143 AAAGAATGTTTTTGTGGCA-AACTCCA-T
1 -AAGAAAGCTTTTGTGGCATAA-T--ATT
* * * *
51682170 AAGGAACGCCTTTATGGCACT-TTATT
1 AA-GAAAGCTTTTGTGGCA-TAATATT
51682196 AAGAAAGCTTTTGTGGCATAATATT
1 AAGAAAGCTTTTGTGGCATAATATT
51682221 AA
1 AA
51682223 AGAATGTTTT
Statistics
Matches: 59, Mismatches: 12, Indels: 17
0.67 0.14 0.19
Matches are distributed among these distances:
24 1 0.02
25 22 0.37
26 21 0.36
27 14 0.24
28 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.34
Consensus pattern (25 bp):
AAGAAAGCTTTTGTGGCATAATATT
Found at i:51682239 original size:26 final size:26
Alignment explanation
Indices: 51682090--51682226 Score: 88
Period size: 26 Copynumber: 5.3 Consensus size: 26
51682080 ACACAATAGA
* *
51682090 TAAAGTAAGCCTTTT-TGGCGTAAT-T
1 TAAAGAAAG-CTTTTGTGGCATAATAT
*
51682115 TGAAAGAAAGCTTTTGTGGCGTAATAT
1 T-AAAGAAAGCTTTTGTGGCATAATAT
* *
51682142 TAAAGAATGTTTTTGTGGCA-AACTCCA-
1 TAAAGAAAGCTTTTGTGGCATAA-T--AT
* * * * *
51682169 TAAGGAACGCCTTTATGGCACT-TTAT
1 TAAAGAAAGCTTTTGTGGCA-TAATAT
51682195 T-AAGAAAGCTTTTGTGGCATAATAT
1 TAAAGAAAGCTTTTGTGGCATAATAT
51682220 TAAAGAA
1 TAAAGAA
51682227 TGTTTTTATG
Statistics
Matches: 86, Mismatches: 15, Indels: 21
0.70 0.12 0.17
Matches are distributed among these distances:
24 1 0.01
25 27 0.31
26 39 0.45
27 18 0.21
28 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (26 bp):
TAAAGAAAGCTTTTGTGGCATAATAT
Found at i:51682247 original size:78 final size:78
Alignment explanation
Indices: 51682118--51682278 Score: 304
Period size: 78 Copynumber: 2.1 Consensus size: 78
51682108 CGTAATTTGA
* *
51682118 AAGAAAGCTTTTGTGGCGTAATATTAAAGAATGTTTTTGTGGCAAACTCCATAAGGAACGCCTTT
1 AAGAAAGCTTTTGTGGCATAATATTAAAGAATGTTTTTATGGCAAACTCCATAAGGAACGCCTTT
51682183 ATGGCACTTTATT
66 ATGGCACTTTATT
51682196 AAGAAAGCTTTTGTGGCATAATATTAAAGAATGTTTTTATGGCAAACTCCATAAGGAACGCCTTT
1 AAGAAAGCTTTTGTGGCATAATATTAAAGAATGTTTTTATGGCAAACTCCATAAGGAACGCCTTT
51682261 ATGGCACTTTATT
66 ATGGCACTTTATT
51682274 AAGAA
1 AAGAA
51682279 CCGCCCTTGT
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 81 1.00
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.34
Consensus pattern (78 bp):
AAGAAAGCTTTTGTGGCATAATATTAAAGAATGTTTTTATGGCAAACTCCATAAGGAACGCCTTT
ATGGCACTTTATT
Found at i:51683997 original size:50 final size:50
Alignment explanation
Indices: 51683920--51684057 Score: 224
Period size: 50 Copynumber: 2.7 Consensus size: 50
51683910 TTAATTTAAA
* * *
51683920 GATGCAAACCTTAACTAACATGGGAGTTACATAATGGATA-TCATTATTTAT
1 GATGCATA-CTTAACTAACATGAGAGTTACATAATGCA-AGTCATTATTTAT
51683971 GATGCATACTTAACTAACATGAGAGTTACATAATGCAAGTCATTATTTAT
1 GATGCATACTTAACTAACATGAGAGTTACATAATGCAAGTCATTATTTAT
51684021 GATGCATACTTAACTAACATGAGAGTTACATAATGCA
1 GATGCATACTTAACTAACATGAGAGTTACATAATGCA
51684058 TGAACACATA
Statistics
Matches: 83, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
49 1 0.01
50 75 0.90
51 7 0.08
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.32
Consensus pattern (50 bp):
GATGCATACTTAACTAACATGAGAGTTACATAATGCAAGTCATTATTTAT
Found at i:51692438 original size:42 final size:42
Alignment explanation
Indices: 51692324--51692475 Score: 180
Period size: 42 Copynumber: 3.6 Consensus size: 42
51692314 ATACCAATGT
* * *
51692324 CATATCCCAGATATGATCTTACATGTAATCTCATATCGATGC
1 CATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
* * * *
51692366 CAATAGCCTAGCTATGGTCTTACACGAAATCTCACATCGATGC
1 C-ATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
* * *
51692409 CATATCCCAGATATGGTCTTACACAAAATCTCATA-CTAAGGC
1 CATATCCCAGATATGGTCTTACACGAAATCTCATATC-GATGC
*
51692451 CATATCTCAGATATGGTCTTACACG
1 CATATCCCAGATATGGTCTTACACG
51692476 TAGTCTTAGT
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
41 1 0.01
42 56 0.61
43 35 0.38
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.29
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
Found at i:51696845 original size:13 final size:14
Alignment explanation
Indices: 51696822--51696851 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
51696812 AGGAGAGAAT
51696822 GATGAATGATGAGG
1 GATGAATGATGAGG
51696836 GATG-ATGATGAGG
1 GATGAATGATGAGG
51696849 GAT
1 GAT
51696852 AAGTAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.33, C:0.00, G:0.43, T:0.23
Consensus pattern (14 bp):
GATGAATGATGAGG
Found at i:51701609 original size:42 final size:42
Alignment explanation
Indices: 51701509--51701656 Score: 179
Period size: 42 Copynumber: 3.5 Consensus size: 42
51701499 CCAAGCCATC
*** *
51701509 TCCTAGATATGGTCTTACATGTAATCTCGTATCGATGCCAATA
1 TCCTAGATATGGTCTTACACAAAATCTCATATCGATG-CAATA
* *
51701552 GCCTAGCTATGGTCTTACACAAAATCTCATATCGATGCAATA
1 TCCTAGATATGGTCTTACACAAAATCTCATATCGATGCAATA
* * *
51701594 TCCTAGATATTGTCTTACACAAAATCTCATATTGATGCCATA
1 TCCTAGATATGGTCTTACACAAAATCTCATATCGATGCAATA
* * *
51701636 TCCCAAACATGGTCTTACACA
1 TCCTAGATATGGTCTTACACA
51701657 TAGTCTCAGT
Statistics
Matches: 90, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 59 0.66
43 31 0.34
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (42 bp):
TCCTAGATATGGTCTTACACAAAATCTCATATCGATGCAATA
Found at i:51704700 original size:19 final size:20
Alignment explanation
Indices: 51704676--51704713 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
51704666 GGTACCACCA
51704676 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
51704695 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
51704714 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:51706213 original size:26 final size:26
Alignment explanation
Indices: 51706177--51706272 Score: 174
Period size: 26 Copynumber: 3.7 Consensus size: 26
51706167 GGATATTACA
51706177 TGGGGCATAAGCCCTTTTCAATAAAC
1 TGGGGCATAAGCCCTTTTCAATAAAC
**
51706203 TGGGGCATAAGCCCTTTTCGGTAAAC
1 TGGGGCATAAGCCCTTTTCAATAAAC
51706229 TGGGGCATAAGCCCTTTTCAATAAAC
1 TGGGGCATAAGCCCTTTTCAATAAAC
51706255 TGGGGCATAAGCCCTTTT
1 TGGGGCATAAGCCCTTTT
51706273 GCACTTCCTC
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 66 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
TGGGGCATAAGCCCTTTTCAATAAAC
Found at i:51707162 original size:27 final size:27
Alignment explanation
Indices: 51707071--51707154 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
51707061 AGGGCATATT
* * *
51707071 GTCATTTTACCATACAAGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
51707098 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
*
51707125 GTCACTTTACCCTATAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
51707152 GTC
1 GTC
51707155 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:51707329 original size:27 final size:26
Alignment explanation
Indices: 51707278--51707511 Score: 173
Period size: 27 Copynumber: 8.7 Consensus size: 26
51707268 TAGAAAGTCA
** *
51707278 AGGGTATTTCT-GTAATTTTGTAAATT
1 AGGGTATTT-TGGTAATTTTACAAACT
* * *
51707304 AGGGATATTTTGTTAATTTTAGAAATT
1 AGGG-TATTTTGGTAATTTTACAAACT
* * * *
51707331 GAGGGTGTTTCGGTAATTTCACAAACC
1 -AGGGTATTTTGGTAATTTTACAAACT
*
51707358 AGTGGTATTTTGGTAACTTTACAAACT
1 AG-GGTATTTTGGTAATTTTACAAACT
*
51707385 AGGGGTATTTTGGTAATTTTACAAACC
1 A-GGGTATTTTGGTAATTTTACAAACT
* * * *
51707412 AGTGGTATTTTAGCAATTTTACAGACC
1 AG-GGTATTTTGGTAATTTTACAAACT
** *
51707439 AGGGTATTTTGGTAATTTTACTGATT
1 AGGGTATTTTGGTAATTTTACAAACT
* ** *
51707465 GAGGATATTTTGGTAATTTTGTAAACCA
1 -AGGGTATTTTGGTAATTTTACAAA-CT
*
51707493 AGGGTATTTTAGTAATTTT
1 AGGGTATTTTGGTAATTTT
51707512 GTAAATCAAT
Statistics
Matches: 166, Mismatches: 34, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
26 27 0.16
27 134 0.81
28 5 0.03
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACT
Found at i:51707476 original size:80 final size:81
Alignment explanation
Indices: 51707303--51707511 Score: 208
Period size: 80 Copynumber: 2.6 Consensus size: 81
51707293 TTTTGTAAAT
* * *** * ** * *
51707303 TAGGGATATTTTGTTAATTTTAGAAATTGAGGGTGTTTCGGTAATTTCACAAACCAGTGGTATTT
1 TAGGGATATTTTGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACCAGTGGTATTT
51707368 TGGTAACTTTACAAAC
66 TGGTAACTTTACAAAC
* *
51707384 TAGGGGTATTTTGGTAATTTTACAAACC-AGTGGTATTTTAGCAATTTTACAGACCAG-GGTATT
1 TAGGGATATTTTGGTAATTTTACAAACCAAG-GGTATTTTAGCAATTTTACAAACCAGTGGTATT
* **
51707447 TTGGTAATTTTACTGA-
65 TTGGTAACTTTACAAAC
* ** *
51707463 TTGAGGATATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 TAG-GGATATTTTGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTT
51707512 GTAAATCAAT
Statistics
Matches: 106, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
79 2 0.02
80 59 0.56
81 45 0.42
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.42
Consensus pattern (81 bp):
TAGGGATATTTTGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACCAGTGGTATTT
TGGTAACTTTACAAAC
Found at i:51707512 original size:27 final size:27
Alignment explanation
Indices: 51707216--51707552 Score: 118
Period size: 27 Copynumber: 12.4 Consensus size: 27
51707206 GTAAATCTAC
*
51707216 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
51707243 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTT-TAGTAATTTTGT
*
51707269 AGAAAGTCAAGGGTATTTCT-GTAATTTTGT
1 --AAA-CCAAGGGTATTT-TAGTAATTTTGT
**
51707299 AAA-TTAGGGATATTTT-GTTAATTTTAG-
1 AAACCAAGGG-TATTTTAG-TAATTTT-GT
*** * ** ***
51707326 AAATTGAGGGTGTTTCGGTAATTTCAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * **
51707353 AAACC-AGTGGTATTTTGGTAACTTTAC
1 AAACCAAG-GGTATTTTAGTAATTTTGT
* * * **
51707380 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
* **
51707407 AAACC-AGTGGTATTTTAGCAATTTTAC
1 AAACCAAG-GGTATTTTAGTAATTTTGT
* * *
51707434 AGACC-AGGGTATTTTGGTAATTTTACT
1 AAACCAAGGGTATTTTAGTAATTTT-GT
* *** * *
51707461 -GATTGAGGATATTTTGGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
51707487 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * **** *
51707514 AAATCAATGGTAAAACAGTAATTCTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
51707541 AAATCAAGGGTA
1 AAACCAAGGGTA
51707553 AAATAGTAAT
Statistics
Matches: 245, Mismatches: 47, Indels: 36
0.75 0.14 0.11
Matches are distributed among these distances:
26 28 0.11
27 182 0.74
28 15 0.06
29 19 0.08
30 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:51707578 original size:81 final size:81
Alignment explanation
Indices: 51707493--51707673 Score: 245
Period size: 81 Copynumber: 2.2 Consensus size: 81
51707483 TTGTAAACCA
* * * * *
51707493 AGGGTATTTTAGTAATTTTGTAAATCAATGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATA
1 AGGGTAATTTGGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACA
51707558 GTAATTCTATAAATCG
66 GTAATTCTATAAATCG
** * * *
51707574 AGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
1 AGGGTAATTTGGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACA
*
51707639 GTAATTCTGTAAATCG
66 GTAATTCTATAAATCG
* *
51707655 GGGGTACTTTGGTAATTTT
1 AGGGTAATTTGGTAATTTT
51707674 ACAAGTCGAG
Statistics
Matches: 84, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 84 1.00
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.33
Consensus pattern (81 bp):
AGGGTAATTTGGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACA
GTAATTCTATAAATCG
Found at i:51707660 original size:27 final size:27
Alignment explanation
Indices: 51707477--51707653 Score: 228
Period size: 27 Copynumber: 6.6 Consensus size: 27
51707467 GGATATTTTG
* * ***
51707477 GTAATTTTGTAAACCAAGGGTATTTTA
1 GTAATTCTGTAAATCAAGGGTAAAATA
* * *
51707504 GTAATTTTGTAAATCAATGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAATA
51707531 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCAAGGGTAAAATA
* * *
51707558 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCAAGGGTAAAATA
51707585 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCAAGGGTAAAATA
* * *
51707612 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAATA
51707639 GTAATTCTGTAAATC
1 GTAATTCTGTAAATC
51707654 GGGGGTACTT
Statistics
Matches: 131, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 131 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.32
Consensus pattern (27 bp):
GTAATTCTGTAAATCAAGGGTAAAATA
Found at i:51707683 original size:54 final size:54
Alignment explanation
Indices: 51707477--51707653 Score: 255
Period size: 54 Copynumber: 3.3 Consensus size: 54
51707467 GGATATTTTG
* * *** * * * *
51707477 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCAATGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
**
51707531 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
51707585 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
51707639 GTAATTCTGTAAATC
1 GTAATTCTGTAAATC
51707654 GGGGGTACTT
Statistics
Matches: 110, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 110 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.32
Consensus pattern (54 bp):
GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
Found at i:51712583 original size:29 final size:29
Alignment explanation
Indices: 51712518--51712633 Score: 171
Period size: 29 Copynumber: 4.0 Consensus size: 29
51712508 ACATACATGT
* * *
51712518 ATATGGCCTACTAGGCCC-AATCTCATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
51712546 ATATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
* *
51712575 GTATCGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
51712604 ATATGGCTCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
51712633 A
1 A
51712634 AATACATGCT
Statistics
Matches: 79, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 16 0.20
29 63 0.80
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:51731222 original size:23 final size:22
Alignment explanation
Indices: 51731190--51731246 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 22
51731180 CTTGTGGAAG
51731190 AAACAAAACAGA-TTGCAAGGGA
1 AAACAAAACAGATTTGCAA-GGA
*
51731212 AAATAAGAACAGATTTGCAAGGA
1 AAACAA-AACAGATTTGCAAGGA
51731235 AAACAAAACAGA
1 AAACAAAACAGA
51731247 ATTGAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 11 0.35
23 14 0.45
24 6 0.19
ACGTcount: A:0.58, C:0.12, G:0.19, T:0.11
Consensus pattern (22 bp):
AAACAAAACAGATTTGCAAGGA
Found at i:51744270 original size:88 final size:88
Alignment explanation
Indices: 51744121--51744969 Score: 1110
Period size: 88 Copynumber: 9.7 Consensus size: 88
51744111 CGAATTTGGG
** * * * *
51744121 AGATCGAAGCTACAAATCTCTTCTCCCTGAAATAACATTTGAGCGACTTGAAGCCACAATTCGTA
1 AGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCACTGGAGCGGCTCGAAGCCACAATTCGTA
**
51744186 TCTCCTTGAAGTTCCAGTAGAGT
66 TCTCCTTGAAGTTCCAGCGGAGT
* *
51744209 AGATCGAAGCTACAAATCTCTTCTCCCTAAAATGGCACTGGAGCAGCTCGAAGCCACAATTCGTA
1 AGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCACTGGAGCGGCTCGAAGCCACAATTCGTA
* *
51744274 TCTCTTTGAAGTTCTAGCGGAGT
66 TCTCCTTGAAGTTCCAGCGGAGT
* * * *
51744297 AGACCGCAGCTACAAATCTCTTCTCCCTGAAATGGCACTGAAGCAGCTCGAAGCCACAATTCGTA
1 AGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCACTGGAGCGGCTCGAAGCCACAATTCGTA
* **
51744362 TCTCCTTGAAGTTTCAGTAGAGT
66 TCTCCTTGAAGTTCCAGCGGAGT
* * * *
51744385 AGATCGAAGCTACAAATCTCTTCTCCCTAAAATGGCACTGGAGCGGCTCAAAGCCATAATTTGTA
1 AGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCACTGGAGCGGCTCGAAGCCACAATTCGTA
*
51744450 TCTCCTTAAAGTT-CAGCGGAGT
66 TCTCCTTGAAGTTCCAGCGGAGT
* * * * *
51744472 AGATCGAAGCTACAGATCTCTTTTCCCTGAAATGGCACTAGAACGGCTCGAAGCCACAATTTGTA
1 AGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCACTGGAGCGGCTCGAAGCCACAATTCGTA
* **
51744537 TCTCCTTAAAGTTTTAGCGGAGT
66 TCTCCTTGAAGTTCCAGCGGAGT
* * * * *
51744560 AGATCGAAGCTACAAATCTCTTCTCCCTGGAATGGAATTGGAGCGGCTTGAAGCCATAATTCGTA
1 AGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCACTGGAGCGGCTCGAAGCCACAATTCGTA
* * *
51744625 TCTCCTTAAAGTTTCAGCAGAGT
66 TCTCCTTGAAGTTCCAGCGGAGT
* ** * *
51744648 AGATCGAAGCTACAAATCTCTTCTCCCTAAAATGGCACTGGAATGGCTCAAAGCCATAATTCGTA
1 AGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCACTGGAGCGGCTCGAAGCCACAATTCGTA
** *
51744713 TCTATTTGAAGTTTCAGCGGAGT
66 TCTCCTTGAAGTTCCAGCGGAGT
* *
51744736 AGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCATTGGAGCGACTCGAAGCCACAATTCGTA
1 AGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCACTGGAGCGGCTCGAAGCCACAATTCGTA
*
51744801 TCTCCTTGAAGTTCCAGCAGAGT
66 TCTCCTTGAAGTTCCAGCGGAGT
* * * *
51744824 AGATCGAAGCTATAAATCTCTTCTCCCTAAAATGACACTGGAGCATG-TCGAAGCCACAATTCGT
1 AGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCACTGGAGC-GGCTCGAAGCCACAATTCGT
* *
51744888 ATCTCTTTGAAGTTCTAGCGGAGT
65 ATCTCCTTGAAGTTCCAGCGGAGT
* * * * *
51744912 AGATCGCAGCTACAAATCTCTTCTCCCTGAAATAGCATTGGAGC-GATTGAAGCCACAA
1 AGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCACTGGAGCGGCTCGAAGCCACAA
51744970 ACCTTATCTC
Statistics
Matches: 667, Mismatches: 91, Indels: 7
0.87 0.12 0.01
Matches are distributed among these distances:
86 1 0.00
87 89 0.13
88 577 0.87
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (88 bp):
AGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCACTGGAGCGGCTCGAAGCCACAATTCGTA
TCTCCTTGAAGTTCCAGCGGAGT
Found at i:51744831 original size:44 final size:44
Alignment explanation
Indices: 51744170--51744926 Score: 215
Period size: 44 Copynumber: 17.2 Consensus size: 44
51744160 TGAGCGACTT
* **
51744170 GAAGCCACAATTCGTATCTCCTTGAAGTTCCAGTAGAGTAGATC
1 GAAGCCACAATTCGTATCTCCTTGAAGTTGCAGCGGAGTAGATC
* * * * * * *
51744214 GAAGCTACAAATCTC-T-TCTCCCTAAAATGGCA-CTGGAGCAGCTC
1 GAAGCCAC-AAT-TCGTATCTCCTTGAAGTTGCAGC-GGAGTAGATC
* *
51744258 GAAGCCACAATTCGTATCTCTTTGAAGTT-CTAGCGGAGTAGACC
1 GAAGCCACAATTCGTATCTCCTTGAAGTTGC-AGCGGAGTAGATC
* * * * * * * *
51744302 GCAGCTACAAATCTC-T-TCTCCCTGAAATGGCA-CTGAAGCAGCTC
1 GAAGCCAC-AAT-TCGTATCTCCTTGAAGTTGCAGC-GGAGTAGATC
* **
51744346 GAAGCCACAATTCGTATCTCCTTGAAGTTTCAGTAGAGTAGATC
1 GAAGCCACAATTCGTATCTCCTTGAAGTTGCAGCGGAGTAGATC
* * * * * ** *
51744390 GAAGCTACAAATCTC-T-TCTCCCTAAAATGGCA-CTGGAGCGGCTC
1 GAAGCCAC-AAT-TCGTATCTCCTTGAAGTTGCAGC-GGAGTAGATC
* * * *
51744434 AAAGCCATAATTTGTATCTCCTTAAAGTT-CAGCGGAGTAGATC
1 GAAGCCACAATTCGTATCTCCTTGAAGTTGCAGCGGAGTAGATC
* * * * * * * *
51744477 GAAGCTACAGATCTC-T-TTTCCCTGAAATGGCA-C-TAGAACGGCTC
1 GAAGCCACA-AT-TCGTATCTCCTTGAAGTTGCAGCGGAGTA--GATC
* * **
51744521 GAAGCCACAATTTGTATCTCCTTAAAGTTTTAGCGGAGTAGATC
1 GAAGCCACAATTCGTATCTCCTTGAAGTTGCAGCGGAGTAGATC
* * * * ** ** * *
51744565 GAAGCTACAAATCTC-T-TCTCCCTGGAA-TGGAATTGGAGCGGCTT
1 GAAGCCAC-AAT-TCGTATCT-CCTTGAAGTTGCAGCGGAGTAGATC
* * * *
51744609 GAAGCCATAATTCGTATCTCCTTAAAGTTTCAGCAGAGTAGATC
1 GAAGCCACAATTCGTATCTCCTTGAAGTTGCAGCGGAGTAGATC
* * * * * * * *
51744653 GAAGCTACAAATCTC-T-TCTCCCTAAAATGGCA-CTGGAATGGCTC
1 GAAGCCAC-AAT-TCGTATCTCCTTGAAGTTGCAGC-GGAGTAGATC
* * ** *
51744697 AAAGCCATAATTCGTATCTATTTGAAGTTTCAGCGGAGTAGATC
1 GAAGCCACAATTCGTATCTCCTTGAAGTTGCAGCGGAGTAGATC
* * * * ** *
51744741 GAAGCTACAAATCTC-T-TCTCCCTGAAATGGCATTGGAG-CGACTC
1 GAAGCCAC-AAT-TCGTATCTCCTTGAAGTTGCAGCGGAGTAGA-TC
* *
51744785 GAAGCCACAATTCGTATCTCCTTGAAGTTCCAGCAGAGTAGATC
1 GAAGCCACAATTCGTATCTCCTTGAAGTTGCAGCGGAGTAGATC
* * * ** *
51744829 GAAGCTATAAATCTC-T-TCTCCCT-AAAATGACA-CTGGAGCATG-TC
1 GAAGCCA-CAAT-TCGTATCTCCTTGAAGTTG-CAGC-GGAGTA-GATC
*
51744873 GAAGCCACAATTCGTATCTCTTTGAAGTT-CTAGCGGAGTAGATC
1 GAAGCCACAATTCGTATCTCCTTGAAGTTGC-AGCGGAGTAGATC
* *
51744917 GCAGCTACAA
1 GAAGCCACAA
51744927 ATCTCTTCTC
Statistics
Matches: 482, Mismatches: 173, Indels: 116
0.63 0.22 0.15
Matches are distributed among these distances:
42 17 0.04
43 71 0.15
44 333 0.69
45 45 0.09
46 16 0.03
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (44 bp):
GAAGCCACAATTCGTATCTCCTTGAAGTTGCAGCGGAGTAGATC
Found at i:51744969 original size:439 final size:439
Alignment explanation
Indices: 51744121--51744948 Score: 1286
Period size: 439 Copynumber: 1.9 Consensus size: 439
51744111 CGAATTTGGG
*
51744121 AGATCGAAGCTACAAATCTCTTCTCCCTGAAATAACATTTGAGCGACTTGAAGCCACAATTCGTA
1 AGATCGAAGCTACAAATCTCTTCTCCCTGAAATAACATTGGAGCGACTTGAAGCCACAATTCGTA
* *
51744186 TCTCCTTGAAGTTCCAGTAGAGTAGATCGAAGCTACAAATCTCTTCTCCCTAAAATGGCACTGGA
66 TCTCCTTAAAGTTCCAGCAGAGTAGATCGAAGCTACAAATCTCTTCTCCCTAAAATGGCACTGGA
* * * *
51744251 GCAGCTCGAAGCCACAATTCGTATCTCTTTGAAGTTCTAGCGGAGTAGACCGCAGCTACAAATCT
131 ACAGCTCAAAGCCACAATTCGTATCTATTTGAAGTTCTAGCGGAGTAGACCGAAGCTACAAATCT
* *
51744316 CTTCTCCCTGAAATGGCACTGAAGCAGCTCGAAGCCACAATTCGTATCTCCTTGAAGTTTCAGTA
196 CTTCTCCCTGAAATGGCACTGAAGCAGCTCGAAGCCACAATTCGTATCTCCTTGAAGTTCCAGCA
* *
51744381 GAGTAGATCGAAGCTACAAATCTCTTCTCCCTAAAATGGCACTGGAGCGGCTCAAAGCCATAATT
261 GAGTAGATCGAAGCTACAAATCTCTTCTCCCTAAAATGACACTGGAGCGGCTCAAAGCCACAATT
* * * *
51744446 TGTATCTCCTTAAAGTTCAGCGGAGTAGATCGAAGCTACAGATCTCTTTTCCCTGAAATGGCACT
326 CGTATCTCCTTAAAGTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATAGCACT
*
51744511 AGAACGGCTCGAAGCCACAATTTGTATCTCCTTAAAGTTTTAGCGGAGT
391 AGAACGGATCGAAGCCACAATTTGTATCTCCTTAAAGTTTTAGCGGAGT
* * * *
51744560 AGATCGAAGCTACAAATCTCTTCTCCCTGGAATGGA-ATTGGAGCGGCTTGAAGCCATAATTCGT
1 AGATCGAAGCTACAAATCTCTTCTCCCTGAAAT-AACATTGGAGCGACTTGAAGCCACAATTCGT
*
51744624 ATCTCCTTAAAGTTTCAGCAGAGTAGATCGAAGCTACAAATCTCTTCTCCCTAAAATGGCACTGG
65 ATCTCCTTAAAGTTCCAGCAGAGTAGATCGAAGCTACAAATCTCTTCTCCCTAAAATGGCACTGG
** * *
51744689 AATGGCTCAAAGCCATAATTCGTATCTATTTGAAGTT-TCAGCGGAGTAGATCGAAGCTACAAAT
130 AACAGCTCAAAGCCACAATTCGTATCTATTTGAAGTTCT-AGCGGAGTAGACCGAAGCTACAAAT
* *
51744753 CTCTTCTCCCTGAAATGGCATTGGAGC-GACTCGAAGCCACAATTCGTATCTCCTTGAAGTTCCA
194 CTCTTCTCCCTGAAATGGCACTGAAGCAG-CTCGAAGCCACAATTCGTATCTCCTTGAAGTTCCA
* * *
51744817 GCAGAGTAGATCGAAGCTATAAATCTCTTCTCCCTAAAATGACACTGGAGCATG-TCGAAGCCAC
258 GCAGAGTAGATCGAAGCTACAAATCTCTTCTCCCTAAAATGACACTGGAGC-GGCTCAAAGCCAC
* * *
51744881 AATTCGTATCTCTTTGAAGTTCTAGCGGAGTAGATCGCAGCTACAAATCTCTTCTCCCTGAAATA
322 AATTCGTATCTCCTTAAAGTTC-AGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATA
51744946 GCA
386 GCA
51744949 TTGGAGCGAT
Statistics
Matches: 352, Mismatches: 32, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
438 2 0.01
439 307 0.87
440 43 0.12
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (439 bp):
AGATCGAAGCTACAAATCTCTTCTCCCTGAAATAACATTGGAGCGACTTGAAGCCACAATTCGTA
TCTCCTTAAAGTTCCAGCAGAGTAGATCGAAGCTACAAATCTCTTCTCCCTAAAATGGCACTGGA
ACAGCTCAAAGCCACAATTCGTATCTATTTGAAGTTCTAGCGGAGTAGACCGAAGCTACAAATCT
CTTCTCCCTGAAATGGCACTGAAGCAGCTCGAAGCCACAATTCGTATCTCCTTGAAGTTCCAGCA
GAGTAGATCGAAGCTACAAATCTCTTCTCCCTAAAATGACACTGGAGCGGCTCAAAGCCACAATT
CGTATCTCCTTAAAGTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATAGCACT
AGAACGGATCGAAGCCACAATTTGTATCTCCTTAAAGTTTTAGCGGAGT
Found at i:51745110 original size:45 final size:46
Alignment explanation
Indices: 51745061--51745356 Score: 148
Period size: 45 Copynumber: 6.6 Consensus size: 46
51745051 GATAGCAAAT
* *
51745061 CTTATCTCTCTGAAATTGCAGTAGAGCAGAGTTAAAGCTA-TAAAC
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGAGTTAAAGCTACTAAAC
* * * ** * **
51745106 CTTATCCCCCTGAAGTGGCAGT-GAG--GTAGGTAGAATTTACGAGTC
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAG-AGTTA-AAGCTACTAAAC
* * * * * * *
51745151 C-TATCTCCTTAAAGTTGCAGTAAAGCCGA-TTGAAGATAGC-AAAT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGAGTTAAAGCTA-CTAAAC
* * *
51745195 CTTATCTCTCTGAAGTTGCAGTAGAGCAGAGTTAAAACTA-TAAAT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGAGTTAAAGCTACTAAAC
* * * * * * ***
51745240 CTTATCCCCCTGAAGTTGCAGTGGGGCAG-GTTGAAGTTACCAGTT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGAGTTAAAGCTACTAAAC
* * * * **
51745285 CTTATC-CCTCTGAAGTTGCAGTGGGGCA-AGTTGAAGTTAC-AAGT
1 CTTATCTCC-CTGAAGTTGCAGTAGAGCAGAGTTAAAGCTACTAAAC
*
51745329 CTTATCTCCCTGAAGTTGCAGTGGAGCA
1 CTTATCTCCCTGAAGTTGCAGTAGAGCA
51745357 AACTGAAGAA
Statistics
Matches: 194, Mismatches: 43, Indels: 29
0.73 0.16 0.11
Matches are distributed among these distances:
42 1 0.01
43 4 0.02
44 64 0.33
45 117 0.60
46 7 0.04
47 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (46 bp):
CTTATCTCCCTGAAGTTGCAGTAGAGCAGAGTTAAAGCTACTAAAC
Found at i:51745332 original size:134 final size:136
Alignment explanation
Indices: 51744968--51745356 Score: 461
Period size: 134 Copynumber: 2.9 Consensus size: 136
51744958 TTGAAGCCAC
* * *
51744968 AAACCTTATCTCCCTAAAGTTGCAGTGAAGCAGGTTGAAGTTA-CA-TGTCTTATCTCC-CTGAA
1 AAACCTTATCCCCCTGAAGTTGCAGTGAGGCAGGTTGAAGTTACCAGT-TCTTATCTCCTCTGAA
* * * ** *
51745030 GTTGTAATGGAGAAAACTGAAGATAGCAAATCTTATCTCTCTGAAATTGCAGTAGAGCAGAGTTA
65 GTTGCAGTGGAGCAAGTTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAGTTA
*
51745095 AAGCTAT
130 AAACTAT
* * * * * * *
51745102 AAACCTTATCCCCCTGAAGTGGCAGTGAGGTAGGTAGAATTTACGAG-TCCTATCTCCT-TAAAG
1 AAACCTTATCCCCCTGAAGTTGCAGTGAGGCAGGTTGAAGTTACCAGTTCTTATCTCCTCTGAAG
** *
51745165 TTGCAGTAAAGC-CGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAGTTA
66 TTGCAGTGGAGCAAG-TTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAGTTA
51745229 AAACTAT
130 AAACTAT
* *
51745236 AAATCTTATCCCCCTGAAGTTGCAGTGGGGCAGGTTGAAGTTACCAGTTCTTATC-CCTCTGAAG
1 AAACCTTATCCCCCTGAAGTTGCAGTGAGGCAGGTTGAAGTTACCAGTTCTTATCTCCTCTGAAG
* * * * *
51745300 TTGCAGTGGGGCAAGTTGAAGTTA-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA
66 TTGCAGTGGAGCAAGTTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCA
51745357 AACTGAAGAA
Statistics
Matches: 211, Mismatches: 37, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
134 182 0.86
135 28 0.13
136 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (136 bp):
AAACCTTATCCCCCTGAAGTTGCAGTGAGGCAGGTTGAAGTTACCAGTTCTTATCTCCTCTGAAG
TTGCAGTGGAGCAAGTTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAGTTAA
AACTAT
Found at i:51745364 original size:89 final size:90
Alignment explanation
Indices: 51745194--51745364 Score: 218
Period size: 89 Copynumber: 1.9 Consensus size: 90
51745184 AGATAGCAAA
* *
51745194 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGAGTTAAAACTATAAATCTTATCCCCCTGAAGTTGC
1 TCTTATCCCTCTGAAGTTGCAGTAGAGCAGAGTTAAAACTACAAATCTTATCCCCCTGAAGTTGC
* ***
51745259 AGTGGGGCAGGTTGAAGTTACCAGT
66 AGTGGAGCAAACTGAAGTTACCAGT
* * * ** * *
51745284 TCTTATCCCTCTGAAGTTGCAGTGGGGCA-AGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGC
1 TCTTATCCCTCTGAAGTTGCAGTAGAGCAGAGTTAAAACTACAAATCTTATCCCCCTGAAGTTGC
51745348 AGTGGAGCAAACTGAAG
66 AGTGGAGCAAACTGAAG
51745365 AAAGTAGATC
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
89 42 0.62
90 26 0.38
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (90 bp):
TCTTATCCCTCTGAAGTTGCAGTAGAGCAGAGTTAAAACTACAAATCTTATCCCCCTGAAGTTGC
AGTGGAGCAAACTGAAGTTACCAGT
Found at i:51745376 original size:134 final size:135
Alignment explanation
Indices: 51744972--51745402 Score: 385
Period size: 134 Copynumber: 3.2 Consensus size: 135
51744962 AGCCACAAAC
* *
51744972 CTTATCTCCCTAAAGTTGCAGTGAAGCAGGTTGAAGTTA-CA-TGTCTTATCTCC-CTGAAGTTG
1 CTTATCCCCCTGAAGTTGCAGTGAAGCAGGTTGAAGTTACCAGT-TCTTATCTCCTCTGAAGTTG
* * * ** * ** *
51745034 TAATGGAGAAAACTGAAGATAGCAAATCTTATCTCTCTGAAATTGCAGTAGAGCAGAGTTAAAGC
65 CAGTGGAGCAAGTTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCA-AACTAAAGA
* *
51745099 TATAAAC
129 AATAAAT
* * * * * * * *
51745106 CTTATCCCCCTGAAGTGGCAGTGAGGTAGGTAGAATTTACGAG-TCCTATCTCCT-TAAAGTTGC
1 CTTATCCCCCTGAAGTTGCAGTGAAGCAGGTTGAAGTTACCAGTTCTTATCTCCTCTGAAGTTGC
** * **
51745169 AGTAAAGC-CGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAGTTAAA-A
66 AGTGGAGCAAG-TTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCA-AACTAAAGA
*
51745232 CTATAAAT
129 -AATAAAT
**
51745240 CTTATCCCCCTGAAGTTGCAGTGGGGCAGGTTGAAGTTACCAGTTCTTATC-CCTCTGAAGTTGC
1 CTTATCCCCCTGAAGTTGCAGTGAAGCAGGTTGAAGTTACCAGTTCTTATCTCCTCTGAAGTTGC
* * * * * *
51745304 AGTGGGGCAAGTTGAAGTTA-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGAAA
66 AGTGGAGCAAGTTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAAACTAAAGAAA
*
51745368 GTAGAT
131 -TAAAT
* * * *
51745374 CTTATCTCCTTGAAGTTGCAATGGAGCAG
1 CTTATCCCCCTGAAGTTGCAGTGAAGCAG
51745403 ATCAAACTAT
Statistics
Matches: 241, Mismatches: 46, Indels: 20
0.79 0.15 0.07
Matches are distributed among these distances:
133 5 0.02
134 207 0.86
135 28 0.12
136 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (135 bp):
CTTATCCCCCTGAAGTTGCAGTGAAGCAGGTTGAAGTTACCAGTTCTTATCTCCTCTGAAGTTGC
AGTGGAGCAAGTTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAAACTAAAGAAA
TAAAT
Found at i:51745392 original size:45 final size:44
Alignment explanation
Indices: 51745239--51745401 Score: 130
Period size: 45 Copynumber: 3.7 Consensus size: 44
51745229 AAACTATAAA
* * * *** ** *
51745239 TCTTATCCCCCTGAAGTTGCAGTGGGGCAGGTTGAAGTTACCAG
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCAAACTGAAGAAACAAG
* ** **
51745283 TTCTTATC-CCTCTGAAGTTGCAGTGGGGCAAGTTGAAGTTACAAG
1 -TCTTATCTCCT-TGAAGTTGCAGTGGAGCAAACTGAAGAAACAAG
* **
51745328 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGAAAGTAG
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCAAACTGAAGAAACAAG
*
51745372 ATCTTATCTCCTTGAAGTTGCAATGGAGCA
1 -TCTTATCTCCTTGAAGTTGCAGTGGAGCA
51745402 GATCAAACTA
Statistics
Matches: 102, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
44 35 0.34
45 67 0.66
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCTTGAAGTTGCAGTGGAGCAAACTGAAGAAACAAG
Found at i:51745958 original size:14 final size:15
Alignment explanation
Indices: 51745934--51745966 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
51745924 ATGCAACACG
*
51745934 CAAACGAAGAAGAAA
1 CAAACGAAGAAAAAA
51745949 CAAA-GAAGAAAAAA
1 CAAACGAAGAAAAAA
51745963 CAAA
1 CAAA
51745967 AAAAGAAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.73, C:0.12, G:0.15, T:0.00
Consensus pattern (15 bp):
CAAACGAAGAAAAAA
Found at i:51746955 original size:3 final size:3
Alignment explanation
Indices: 51746947--51747012 Score: 132
Period size: 3 Copynumber: 22.0 Consensus size: 3
51746937 ATTAATCCTC
51746947 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
51746995 TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA
51747013 ATTTTTTTTA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:51747117 original size:27 final size:26
Alignment explanation
Indices: 51747087--51747162 Score: 77
Period size: 27 Copynumber: 2.8 Consensus size: 26
51747077 TTTATTTAAA
*
51747087 CTTTATTAGTTTTTATTGTTATTATTT
1 CTTTATTA-TTTTTATTGTTATTAATT
51747114 CTTTATTATTTGTTCACTTGATTATTAATT
1 CTTTATTATTT-TT-A-TTG-TTATTAATT
51747144 -TTT-TTATTTTTATT-TTATT
1 CTTTATTATTTTTATTGTTATT
51747163 TTTTTATTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
23 5 0.11
25 2 0.05
26 4 0.09
27 12 0.27
28 7 0.16
29 6 0.14
30 8 0.18
ACGTcount: A:0.20, C:0.05, G:0.05, T:0.70
Consensus pattern (26 bp):
CTTTATTATTTTTATTGTTATTAATT
Found at i:51747166 original size:13 final size:13
Alignment explanation
Indices: 51747150--51747174 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51747140 AATTTTTTTA
51747150 TTTTTATTTTATT
1 TTTTTATTTTATT
51747163 TTTTTATTTTAT
1 TTTTTATTTTAT
51747175 AATCGATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTATTTTATT
Found at i:51752873 original size:49 final size:49
Alignment explanation
Indices: 51752732--51753136 Score: 662
Period size: 49 Copynumber: 8.4 Consensus size: 49
51752722 ATTTTGTTAC
*
51752732 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCAAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
51752781 GATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
51752828 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
*
51752877 GATGAATGTGAAAGTGTATGTATATGTGGTAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
*
51752926 GATGAATGTGAAAGTGTATGTATATGTGGTAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
*
51752975 GATGAATGTGAAAGTGTATGTATATGTGGTAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
*
51753024 GATGAATGTGAAAGTGTATG--TATGTGATAAGGCCAAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
* * * *
51753071 GATGAATGTGAAA--GTATATATATATGATAAGGCCGAATGGTCAATGG
1 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
*
51753118 GATAGAA-GTGGAAGTGTAT
1 GAT-GAATGTGAAAGTGTAT
51753137 AACTGTGATA
Statistics
Matches: 339, Mismatches: 10, Indels: 14
0.93 0.03 0.04
Matches are distributed among these distances:
45 4 0.01
47 115 0.34
48 3 0.01
49 217 0.64
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (49 bp):
GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
Found at i:51755004 original size:40 final size:40
Alignment explanation
Indices: 51754940--51755216 Score: 457
Period size: 40 Copynumber: 7.0 Consensus size: 40
51754930 AAGTTCAGTA
*
51754940 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
*
51754980 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
* *
51755020 TGATGTATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTGG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
*
51755060 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
*
51755100 TGAGGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
* *
51755140 TGATATATCCGGGCTAAGTCCCGAAGAGCACTCGTGCTGG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
* *
51755180 TGATGTATCCAGGCTAAGCCCCGAAG-GCATTCGTGCT
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
51755217 TGGACAAAAT
Statistics
Matches: 224, Mismatches: 13, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
39 10 0.04
40 214 0.96
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.26
Consensus pattern (40 bp):
TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
Found at i:51755512 original size:25 final size:25
Alignment explanation
Indices: 51755462--51755512 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
51755452 TGTGTGACAA
* *
51755462 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
51755487 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
51755512 C
1 C
51755513 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:51759359 original size:22 final size:22
Alignment explanation
Indices: 51759331--51759408 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
51759321 AAGTGTATGT
51759331 ATGTGATAAGGCTGAATGGCCA
1 ATGTGATAAGGCTGAATGGCCA
* * *
51759353 ATGTGATGAATG-TGAAAGTGCATGTA
1 ATGTGAT-AAGGCTGAATG-GC---CA
*
51759379 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCTGAATGGCCA
51759402 ATGTGAT
1 ATGTGAT
51759409 GAATGTGAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 14
0.67 0.11 0.22
Matches are distributed among these distances:
22 19 0.45
23 6 0.14
26 6 0.14
27 11 0.26
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCTGAATGGCCA
Found at i:51759425 original size:96 final size:95
Alignment explanation
Indices: 51759263--51759518 Score: 410
Period size: 96 Copynumber: 2.7 Consensus size: 95
51759253 ATTTTGTTAC
51759263 GATGAATGTGAAAGTG-TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
1 GATGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
*
51759327 ATGTATGTGATAAGGCTGAATGGCCAATGT
66 ATGTATGTGATAAGGCCGAATGGCCAATGT
*
51759357 GATGAATGTGAAAGTGCATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
51759422 TATGTATGTGATAAGGCCGAATGGCCAATGT
65 TATGTATGTGATAAGGCCGAATGGCCAATGT
* * * * *
51759453 GATGAAAGTGAAAGT-ATATATATATGATAAGGCCGAATGGTCAATGGGATGGAA-GTGGAAGTG
1 GATGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGAT-GAATGTGAAAGTG
51759516 TAT
65 TAT
51759519 AACTGTGATA
Statistics
Matches: 151, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
94 58 0.38
95 3 0.02
96 90 0.60
ACGTcount: A:0.34, C:0.07, G:0.31, T:0.27
Consensus pattern (95 bp):
GATGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
ATGTATGTGATAAGGCCGAATGGCCAATGT
Found at i:51759528 original size:47 final size:47
Alignment explanation
Indices: 51759263--51759530 Score: 396
Period size: 47 Copynumber: 5.7 Consensus size: 47
51759253 ATTTTGTTAC
51759263 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
51759310 GATGAATGTGAAAGTGTATGTATGTGATAAGGCTGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
*
51759357 GATGAATGTGAAAGTGCATGTATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGT
*
51759406 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * * * *
51759453 GATGAAAGTGAAAGTATATATATATGATAAGGCCGAATGGTCAATGG
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
*
51759500 GATGGAA-GTGGAAGTGTATA-ACTGTGATAAG
1 GAT-GAATGTGAAAGTGTATATA-TGTGATAAG
51759531 TCCTGAAGGA
Statistics
Matches: 201, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
46 1 0.00
47 153 0.76
48 3 0.01
49 44 0.22
ACGTcount: A:0.34, C:0.07, G:0.31, T:0.27
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:51762953 original size:27 final size:27
Alignment explanation
Indices: 51762912--51762974 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
51762902 TGGATAAGTT
*
51762912 GTAGAATTATCGAAATACCCCTATAGG
1 GTAGAATTATCGAAATACACCTATAGG
* *
51762939 GTAGAATTATTGAAATACACCTGTAGG
1 GTAGAATTATCGAAATACACCTATAGG
51762966 GTAGAATTA
1 GTAGAATTA
51762975 CCAAGATACC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.29
Consensus pattern (27 bp):
GTAGAATTATCGAAATACACCTATAGG
Found at i:51762983 original size:27 final size:26
Alignment explanation
Indices: 51762912--51763001 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 26
51762902 TGGATAAGTT
* *
51762912 GTAGAATTATCGAAATACCCCTATAGG
1 GTAGAATTATCCAAATA-CCCTGTAGG
**
51762939 GTAGAATTATTGAAATACACCTGTAGG
1 GTAGAATTATCCAAATAC-CCTGTAGG
*
51762966 GTAGAATTA-CCAAGATACCTTTGTAGG
1 GTAGAATTATCCAA-ATACC-CTGTAGG
*
51762993 GTAAAATTA
1 GTAGAATTA
51763002 CCATTTTGCC
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
26 4 0.07
27 50 0.93
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (26 bp):
GTAGAATTATCCAAATACCCTGTAGG
Found at i:51777381 original size:26 final size:26
Alignment explanation
Indices: 51777352--51777415 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 26
51777342 ATGGTATGAT
*
51777352 TGAAAATGATTTATTGATGTTAGATC
1 TGAAAATGATTGATTGATGTTAGATC
51777378 TGAAAAT-A--GATTGATGTTAGATC
1 TGAAAATGATTGATTGATGTTAGATC
*
51777401 TTAAAATAGATTGAT
1 TGAAAAT-GATTGAT
51777416 GTAATGATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
23 20 0.62
25 2 0.06
26 7 0.22
27 3 0.09
ACGTcount: A:0.39, C:0.03, G:0.19, T:0.39
Consensus pattern (26 bp):
TGAAAATGATTGATTGATGTTAGATC
Found at i:51777393 original size:23 final size:23
Alignment explanation
Indices: 51777364--51777417 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
51777354 AAAATGATTT
51777364 ATTGATGTTAGATCTGAAAATAG
1 ATTGATGTTAGATCTGAAAATAG
*
51777387 ATTGATGTTAGATCTTAAAATAG
1 ATTGATGTTAGATCTGAAAATAG
51777410 ATTGATGT
1 ATTGATGT
51777418 AATGATTATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.37, C:0.04, G:0.20, T:0.39
Consensus pattern (23 bp):
ATTGATGTTAGATCTGAAAATAG
Found at i:51782898 original size:31 final size:31
Alignment explanation
Indices: 51782863--51782921 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
51782853 ATGCTTATAT
* *
51782863 CAATTCAGCAATATGTCAAATATATACACAC
1 CAATTCAGCAATATGTAAAACATATACACAC
* *
51782894 CAATTCAGTAATATTTAAAACATATACA
1 CAATTCAGCAATATGTAAAACATATACA
51782922 TTTGAATTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.47, C:0.19, G:0.05, T:0.29
Consensus pattern (31 bp):
CAATTCAGCAATATGTAAAACATATACACAC
Found at i:51786667 original size:45 final size:45
Alignment explanation
Indices: 51786560--51786779 Score: 279
Period size: 45 Copynumber: 5.0 Consensus size: 45
51786550 CCCGAATTCA
* * * *
51786560 TCACCGGCATT-TCGCCTGCTAGGCTCGAA-GCTCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* * *
51786602 TTACCGGCATTATAGGCTGCTAGGCTCGAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
51786647 -CAACCGGCATTATAGCCTGCTAAGCTCAAAGGCCTGAATAGTATC
1 TC-ACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
51786692 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
51786737 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCAAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
51786780 CCGTACGATA
Statistics
Matches: 156, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
42 10 0.06
43 16 0.10
44 4 0.03
45 124 0.79
46 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:51791170 original size:27 final size:26
Alignment explanation
Indices: 51791092--51791230 Score: 154
Period size: 27 Copynumber: 5.2 Consensus size: 26
51791082 AGCATGGCTG
* * *
51791092 CCAGAACAGATAATATGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
51791118 CCAGATACAAATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
51791146 CCAGAACAGATATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
51791173 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
51791200 CTAGATCAGATAATTGTGGC-GTAGCCA
1 CCAGAACAGATAA-TGTGGCAG-AGCCA
51791227 CCAG
1 CCAG
51791231 GACGCTTCCT
Statistics
Matches: 98, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
26 7 0.07
27 75 0.77
28 16 0.16
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:51791673 original size:8 final size:8
Alignment explanation
Indices: 51791647--51791676 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
51791637 CAAAATACCA
51791647 GCTTTTCG
1 GCTTTTCG
*
51791655 GCATTTCG
1 GCTTTTCG
51791663 GCTTTTCG
1 GCTTTTCG
51791671 GCTTTT
1 GCTTTT
51791677 GCCGATCTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.23, G:0.23, T:0.50
Consensus pattern (8 bp):
GCTTTTCG
Found at i:51792436 original size:16 final size:16
Alignment explanation
Indices: 51792415--51792445 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51792405 GGCTAAAAGA
51792415 AAAAGAAAAGATGAGC
1 AAAAGAAAAGATGAGC
*
51792431 AAAAGAAGAGATGAG
1 AAAAGAAAAGATGAG
51792446 TAGAGAATTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.03, G:0.29, T:0.06
Consensus pattern (16 bp):
AAAAGAAAAGATGAGC
Found at i:51799261 original size:46 final size:46
Alignment explanation
Indices: 51799211--51799378 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 46
51799201 TGGTTGAGCA
* * *
51799211 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACG
* * * *
51799257 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAA--A--CG
* * *
51799304 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACG
* *
51799350 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
51799379 GTTTATGGGC
Statistics
Matches: 101, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 56 0.55
47 28 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACG
Found at i:51799367 original size:93 final size:93
Alignment explanation
Indices: 51799208--51799380 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
51799198 GGATGGTTGA
* * ***
51799208 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACACCCGAACTCGTTGAGT
51799273 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
51799301 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACACCCGAACTCGTTGAGT
51799366 TGAGTCCGAGTTCGT
66 TGAGTCCGAGTTCGT
51799381 TTATGGGCGG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51802335 original size:15 final size:15
Alignment explanation
Indices: 51802315--51802370 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
51802305 GTATCTTGGG
51802315 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
51802330 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
51802345 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
51802360 TTTCCTTATTC
1 TTTCTTTATTC
51802371 GGTTTCCTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
14 2 0.06
15 32 0.89
16 2 0.06
ACGTcount: A:0.12, C:0.18, G:0.11, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:51804819 original size:46 final size:46
Alignment explanation
Indices: 51804769--51804944 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
51804759 TGGTTGAGCA
* *
51804769 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
51804815 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
51804862 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
51804908 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51804945 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 28 0.26
48 3 0.03
50 6 0.06
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:51804925 original size:93 final size:93
Alignment explanation
Indices: 51804766--51804937 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
51804756 GGATGGTTGA
* * *
51804766 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
51804831 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
51804859 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
51804924 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
51804938 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51806927 original size:26 final size:26
Alignment explanation
Indices: 51806898--51807008 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
51806888 AGCATGGCTG
* *
51806898 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
51806924 CCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
51806952 CC-GAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
51806978 CTAGATCAGATAATTGTGGC-GTAGCCA
1 CCAGAACAGATAA-TGTGGCAG-AGCCA
51807005 CCAG
1 CCAG
51807009 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
26 26 0.36
27 34 0.47
28 12 0.17
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:51806989 original size:53 final size:53
Alignment explanation
Indices: 51806901--51807006 Score: 135
Period size: 53 Copynumber: 2.0 Consensus size: 53
51806891 ATGGCTGCCA
* *
51806901 GAACAGATAATGTGACAGAGTCACCAGATATAGATAATCGTGGCAG-AGCCACC
1 GAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGC-GTAGCCACC
* * *
51806954 GAACAGATATATGTGGCAGAGCCACTAGAT-CAGATAATTGTGGCGTAGCCACC
1 GAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCGTAGCCACC
51807007 AGGACGCTTC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
52 1 0.02
53 28 0.61
54 17 0.37
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (53 bp):
GAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCGTAGCCACC
Found at i:51809331 original size:43 final size:43
Alignment explanation
Indices: 51809296--51809414 Score: 143
Period size: 41 Copynumber: 2.8 Consensus size: 43
51809286 ATCGATTTGA
* *
51809296 GATTACATGTAAGACCATGTCTGAGATATTGGCATC-ATATTT
1 GATTACATATAAGACCATGTCTGGGATATTGGCATCGATATTT
** * * *
51809338 GATT-TTTTTAAGACCTTGTCTGGGATAGTGGCATCGATATTT
1 GATTACATATAAGACCATGTCTGGGATATTGGCATCGATATTT
* *
51809380 GATTACATATAAGACCACGTCTGGGATGTTGGCAT
1 GATTACATATAAGACCATGTCTGGGATATTGGCAT
51809415 TGTATGAGCT
Statistics
Matches: 62, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
41 25 0.40
42 14 0.23
43 23 0.37
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (43 bp):
GATTACATATAAGACCATGTCTGGGATATTGGCATCGATATTT
Found at i:51810040 original size:32 final size:32
Alignment explanation
Indices: 51809999--51810061 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
51809989 ATATGGTCAC
*
51809999 TATAATGTGTTCATGAATGTCTAATAGAATTA
1 TATAATGTGTTCATGAATGGCTAATAGAATTA
51810031 TATAATGTGTTCATGAATGGCTAATAGAATT
1 TATAATGTGTTCATGAATGGCTAATAGAATT
51810062 GGTCATTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.06, G:0.17, T:0.40
Consensus pattern (32 bp):
TATAATGTGTTCATGAATGGCTAATAGAATTA
Found at i:51813022 original size:40 final size:40
Alignment explanation
Indices: 51812928--51813110 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
51812918 AATGATGTCT
* * * *
51812928 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC
* * *
51812968 GGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTAAATCT
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
51813008 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
51813048 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
* *
51813088 GGGCTATGTTCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
51813111 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 115 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:51813117 original size:80 final size:79
Alignment explanation
Indices: 51812978--51813143 Score: 201
Period size: 80 Copynumber: 2.1 Consensus size: 79
51812968 GGACTAAGAT
* * * **
51812978 CCGAAGGCATTTGTGTGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
*
51813042 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
* *
51813058 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTTCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
* *
51813122 ATATCCGGTTAAATT
65 AAATCCGGTTAAATC
51813137 CCGAAGG
1 CCGAAGG
51813144 TACGTGATTT
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
79 16 0.22
80 56 0.76
81 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:51815161 original size:13 final size:13
Alignment explanation
Indices: 51815143--51815167 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51815133 TATGTGATAT
51815143 GTGTGAAAATTTC
1 GTGTGAAAATTTC
51815156 GTGTGAAAATTT
1 GTGTGAAAATTT
51815168 TATCATTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:51817001 original size:27 final size:26
Alignment explanation
Indices: 51816914--51816999 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 26
51816904 AGCATGGTTG
* * *
51816914 CCAGAACAGATATTGTGACAGCGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
51816940 CCAGATACAGATATTGTAGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
51816967 CCAGAATAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
51816994 CCAGAA
1 CCAGAA
51817000 TACTTCCTCC
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 11 0.21
27 41 0.79
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:51825287 original size:45 final size:45
Alignment explanation
Indices: 51825223--51825322 Score: 164
Period size: 45 Copynumber: 2.2 Consensus size: 45
51825213 AAAGATTATT
* *
51825223 AACATGTCCCATAAGTGTAGCATAAATCTAAGCACTCTCTACACC
1 AACATGTCCAATAAGTGTAGCATAAATCTAAGCACTCTCCACACC
*
51825268 AACATGTCTAATAAGTGTAGCATAAATCTAAGCACTCTCCACACC
1 AACATGTCCAATAAGTGTAGCATAAATCTAAGCACTCTCCACACC
*
51825313 AACATATCCA
1 AACATGTCCA
51825323 TTGAATGGAG
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 50 1.00
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.24
Consensus pattern (45 bp):
AACATGTCCAATAAGTGTAGCATAAATCTAAGCACTCTCCACACC
Found at i:51826329 original size:16 final size:16
Alignment explanation
Indices: 51826310--51826340 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
51826300 ACAAATTTCA
51826310 ATGGGTCAAAATATCC
1 ATGGGTCAAAATATCC
51826326 ATGGGTCAAAATATC
1 ATGGGTCAAAATATC
51826341 GAAGTAACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (16 bp):
ATGGGTCAAAATATCC
Found at i:51844119 original size:47 final size:47
Alignment explanation
Indices: 51844005--51844581 Score: 895
Period size: 47 Copynumber: 12.1 Consensus size: 47
51843995 GAAATGATAG
51844005 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
51844054 TAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51844101 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA--TG-T--GA
51844153 TAAGGCCTAA-GAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATG-GCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
51844202 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
51844249 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51844296 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51844343 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51844390 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51844437 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51844484 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
51844531 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51844578 TAAG
1 TAAG
51844582 TCCCGAAGGG
Statistics
Matches: 492, Mismatches: 27, Indels: 20
0.91 0.05 0.04
Matches are distributed among these distances:
47 372 0.76
49 73 0.15
50 2 0.00
51 1 0.00
52 38 0.08
54 6 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:51844756 original size:37 final size:37
Alignment explanation
Indices: 51844700--51844778 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
51844690 CCGAGCTCTA
* *
51844700 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
51844737 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51844774 AAGAC
1 AAGAC
51844779 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51848724 original size:47 final size:47
Alignment explanation
Indices: 51848648--51848754 Score: 142
Period size: 47 Copynumber: 2.3 Consensus size: 47
51848638 CTTCGGGACT
* * * *
51848648 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
51848695 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
51848742 TATCACATATATA
1 TATCACATATATA
51848755 TATACACTTT
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
Found at i:51861716 original size:40 final size:40
Alignment explanation
Indices: 51861611--51861828 Score: 300
Period size: 40 Copynumber: 5.5 Consensus size: 40
51861601 AGATTGATAA
* **
51861611 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
51861651 TCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51861690 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
51861730 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
51861770 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
51861810 CTGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
51861829 TATTCGAGTG
Statistics
Matches: 162, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 33 0.20
40 128 0.79
41 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51861853 original size:120 final size:119
Alignment explanation
Indices: 51861611--51861836 Score: 335
Period size: 120 Copynumber: 1.9 Consensus size: 119
51861601 AGATTGATAA
* * *
51861611 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTAATTTCGGGCTAAGCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGT
* * *
51861676 GCGAGTTACCATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAGTT
66 CCGAGTTACCATATCCGGGCTAAGTCCCGAAGGCATTCGAGCTAGTTACTAGTT
* *
51861730 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAG-CCCGAAGGCATTTG
* * * *
51861795 TCCGAGTTACTATATCTGGGCTATGTCCCGAAGGTATTCGAG
65 TCCGAGTTACCATATCCGGGCTAAGTCCCGAAGGCATTCGAG
51861837 TGAGTAGCTG
Statistics
Matches: 94, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
119 45 0.48
120 49 0.52
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGT
CCGAGTTACCATATCCGGGCTAAGTCCCGAAGGCATTCGAGCTAGTTACTAGTT
Found at i:51866555 original size:16 final size:17
Alignment explanation
Indices: 51866526--51866558 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
51866516 TTGCTGGGGA
51866526 CCTTGGCTTCGGTTTTT
1 CCTTGGCTTCGGTTTTT
*
51866543 CCTT-GCTTTGGTTTTT
1 CCTTGGCTTCGGTTTTT
51866559 TTTTTCTCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.00, C:0.21, G:0.21, T:0.58
Consensus pattern (17 bp):
CCTTGGCTTCGGTTTTT
Found at i:51867967 original size:27 final size:27
Alignment explanation
Indices: 51867927--51867987 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
51867917 CCCAAAATAT
* *
51867927 GTAAAATGATCGTAATATCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
*
51867954 GTAAAATGACCGTAATACCCCTGTATG
1 GTAAAATGACCGTAATACCCCTGTAGG
51867981 GTAAAAT
1 GTAAAAT
51867988 AACGATTATG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAGG
Found at i:51880008 original size:48 final size:48
Alignment explanation
Indices: 51879956--51880238 Score: 476
Period size: 48 Copynumber: 5.8 Consensus size: 48
51879946 CAAGATAAAT
*
51879956 ATATATATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
51880004 ATATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAG
1 ATATA--TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
51880054 ACATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
51880102 ATATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 --ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
51880152 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
51880200 ACATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
51880239 GTATCACCCC
Statistics
Matches: 222, Mismatches: 9, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
48 132 0.59
50 90 0.41
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:51880116 original size:98 final size:98
Alignment explanation
Indices: 51879958--51880238 Score: 494
Period size: 98 Copynumber: 2.9 Consensus size: 98
51879948 AGATAAATAT
*
51879958 ATATATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATATGTATATGTGGTAA
1 ATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATATGTATATGTGGTAA
*
51880023 AGTCGAATGGCTAATGTGAAATATGTATGAGAC
66 AGCCGAATGGCTAATGTGAAATATGTATGAGAC
* *
51880056 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATATATATATGTGGTAA
1 ATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATATGTATATGTGGTAA
*
51880121 AGCCGAATGGCTAATGTGAAATATGTATGAGAT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGAC
*
51880154 ATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG--ACATGTATATGTGGTAA
1 ATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATATGTATATGTGGTAA
51880217 AGCCGAATGGCTAATGTGAAAT
66 AGCCGAATGGCTAATGTGAAAT
51880239 GTATCACCCC
Statistics
Matches: 175, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
96 37 0.21
98 138 0.79
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (98 bp):
ATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTATGAGAC
Found at i:51881643 original size:40 final size:40
Alignment explanation
Indices: 51881613--51881795 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
51881603 GCTACTCGTT
*
51881613 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
51881653 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
** *
51881693 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * * *
51881732 CAAATTCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
51881773 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
51881796 AACATCATTC
Statistics
Matches: 120, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
38 3 0.03
39 28 0.23
40 73 0.61
41 16 0.13
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:51881730 original size:79 final size:82
Alignment explanation
Indices: 51881613--51881797 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
51881603 GCTACTCGTT
* **
51881613 CAAATGCCTTCGGGACATAGCCCG-GTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGAAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
51881676 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
51881693 CAAATGCCTTCGGG-CTTAGCCCGAAAT-TAGTATCTCGCACAAATTCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGAAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
51881756 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
51881773 CAAA-GCCTTCGGGACTTAGCCCGAA
1 CAAATGCCTTCGGGACTTAGCCCGAA
51881798 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGAAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:51889892 original size:79 final size:82
Alignment explanation
Indices: 51889781--51889965 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
51889771 GCTACTCGTT
* *
51889781 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
51889844 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
51889861 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
51889924 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
51889941 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51889966 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:51889965 original size:40 final size:40
Alignment explanation
Indices: 51889762--51889965 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
51889752 CGAAATTTAA
** *
51889762 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51889802 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51889842 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51889881 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
51889921 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
51889961 CCGGA
1 CCGGA
51889966 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51891838 original size:48 final size:48
Alignment explanation
Indices: 51891766--51892210 Score: 709
Period size: 48 Copynumber: 9.4 Consensus size: 48
51891756 GGCTGTCACA
* *
51891766 TGAAATATGTATGAGAGATATATATGTGGTAAAGCCGAATGGCTAATG
1 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
51891814 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
51891862 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATA
1 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* * *
51891910 TTAAATATGTATGAGATA--TATATATGGTAAAGCCGAATGGCTAATC
1 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
51891956 TGAAATATGTATGAGATA--TATATGTGGTAAAGCCGAATGGCTAATG
1 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
51892002 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATA
1 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* *
51892050 TGAAATATGTATGATATATGTATATGTGGTAAAGCCGAATGGCTAATA
1 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* * *
51892098 TGAAATATTTATGAGATATATATATGTGGTAAATCCGAATGGCTAATG
1 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* *
51892146 TGAAATATGTATGAGAGATGTATATTTGGTAAAGCCGAATGGCTAATG
1 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* * *
51892194 AGCAATATGTAGGAGAT
1 TGAAATATGTATGAGAT
51892211 GTGTGTATAT
Statistics
Matches: 370, Mismatches: 25, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
46 87 0.24
48 283 0.76
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (48 bp):
TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
Found at i:51892097 original size:188 final size:190
Alignment explanation
Indices: 51891766--51892210 Score: 750
Period size: 188 Copynumber: 2.3 Consensus size: 190
51891756 GGCTGTCACA
51891766 TGAAATATGTATGAGAGATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 TGAAATATGTAT-AGAGATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
51891831 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
65 ATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTATATGTGGTAAAG
*
51891896 CCGAATGGCTAATATTAAATATGTATGAGATATATATA-TGGTAAAGCCGAATGGCTAATC
130 CCGAATGGCTAATATGAAATATGTATGAGATATATATAGTGGTAAAGCCGAATGGCTAATC
51891956 TGAAATATGTAT-GAGATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATA
1 TGAAATATGTATAGAGATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATA
*
51892020 TGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGATATATGTATATGTGGTAAAGC
66 TGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTATATGTGGTAAAGC
* * *
51892085 CGAATGGCTAATATGAAATATTTATGAGATATATATATGTGGTAAATCCGAATGGCTAATG
131 CGAATGGCTAATATGAAATATGTATGAGATATATATA-GTGGTAAAGCCGAATGGCTAATC
* * * * *
51892146 TGAAATATGTATGAGAGATGTATATTTGGTAAAGCCGAATGGCTAATGAGCAATATGTAGGAGAT
1 TGAAATATGTAT-AGAGATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
51892211 GTGTGTATAT
Statistics
Matches: 240, Mismatches: 11, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
188 150 0.62
190 44 0.18
192 46 0.19
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (190 bp):
TGAAATATGTATAGAGATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATA
TGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTATATGTGGTAAAGC
CGAATGGCTAATATGAAATATGTATGAGATATATATAGTGGTAAAGCCGAATGGCTAATC
Found at i:51893654 original size:40 final size:40
Alignment explanation
Indices: 51893599--51893693 Score: 181
Period size: 40 Copynumber: 2.4 Consensus size: 40
51893589 ATTGAGAGTT
51893599 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
51893639 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
51893679 ATATATCCGGGCTAA
1 ATATATCCGGGCTAA
51893694 ACCTCAAAGG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:51893781 original size:28 final size:28
Alignment explanation
Indices: 51893750--51893831 Score: 92
Period size: 29 Copynumber: 2.9 Consensus size: 28
51893740 GCTCTTCAAC
* *
51893750 TGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGCACTATGTGTGCGAGATCAGTAAT
* **
51893778 TGAGGCACTATGTGTGCGAGTTCTTTAAT
1 TGA-GCACTATGTGTGCGAGATCAGTAAT
* *
51893807 CGAGCACTATGTGTGCGAAATCAGT
1 TGAGCACTATGTGTGCGAGATCAGT
51893832 CAGTGGGCAC
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
28 21 0.49
29 22 0.51
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (28 bp):
TGAGCACTATGTGTGCGAGATCAGTAAT
Found at i:51893812 original size:57 final size:57
Alignment explanation
Indices: 51893723--51893852 Score: 149
Period size: 57 Copynumber: 2.3 Consensus size: 57
51893713 TGGAATTATA
* *
51893723 AGGCACTGTGTGTGCAAGCTCTTCAACTGAGCACTATGTGTGCCAGATCAGTAGTTG
1 AGGCACTATGTGTGCAAGCTCTTCAACTGAGCACTATGTGTGCCAAATCAGTAGTTG
* * * *
51893780 AGGCACTATGTGTGCGAGTTCTTTAA-TCGAGCACTATGTGTGCGAAATCAGTCAG-TG
1 AGGCACTATGTGTGCAAGCTCTTCAACT-GAGCACTATGTGTGCCAAATCAGT-AGTTG
* *
51893837 -GGCACTGTGTATGCAA
1 AGGCACTATGTGTGCAA
51893853 AGTGTGTTTC
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
56 14 0.23
57 46 0.74
58 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (57 bp):
AGGCACTATGTGTGCAAGCTCTTCAACTGAGCACTATGTGTGCCAAATCAGTAGTTG
Found at i:51893841 original size:28 final size:27
Alignment explanation
Indices: 51893753--51893842 Score: 81
Period size: 28 Copynumber: 3.2 Consensus size: 27
51893743 CTTCAACTGA
*
51893753 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATCAGTAG-TG-G
* ** * *
51893782 GCACTATGTGTGCGAGTTCTTTAATCGA
1 GCACTATGTGTGCGAGATCAGTAGT-GG
*
51893810 GCACTATGTGTGCGAAATCAGTCAGTGG
1 GCACTATGTGTGCGAGATCAGT-AGTGG
51893838 GCACT
1 GCACT
51893843 GTGTATGCAA
Statistics
Matches: 47, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
28 25 0.53
29 22 0.47
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTATGTGTGCGAGATCAGTAGTGG
Found at i:51897315 original size:48 final size:48
Alignment explanation
Indices: 51897263--51897742 Score: 761
Period size: 48 Copynumber: 10.0 Consensus size: 48
51897253 CAAGATAAAT
*
51897263 ATATATATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
51897311 ATATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATA--TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
51897361 ACATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
51897409 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
51897457 --ATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
51897503 --ATATATATGTGGTAAAGCCGAATGGCTAATGTGAAAGATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
51897549 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
51897597 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
51897645 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * * * *
51897693 AGATGTATATTTGGTAAAGCCGAATGGCTAATGAGCAATATGTAGGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
51897741 AT
1 AT
51897743 GTGTGTATAT
Statistics
Matches: 406, Mismatches: 22, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
46 90 0.22
48 271 0.67
50 45 0.11
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:51897687 original size:236 final size:238
Alignment explanation
Indices: 51897265--51897742 Score: 809
Period size: 236 Copynumber: 2.0 Consensus size: 238
51897255 AGATAAATAT
* *
51897265 ATATATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATATGTATATGTGGTAA
1 ATATATATGTGGTAAAGCCGAATGGCTAATGTGAAAGATGTATGAGA-ATATGTATATGTGGTAA
* *
51897330 AGCCGAATGGCTAATGTGAAATATGTATGAGACATGTATATGTGGTAAAGCCGAATGGCTAATGT
65 AGCCGAATGGCTAATATGAAATATGTATGAGACATGTATATGTGGTAAAGCCGAATGGCTAATAT
51897395 GAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTAT-GAGAT
130 GAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATAGAGAT
*
51897459 ATATATGTGGTAAAGCCGAATGGCTAAT-ATGAAATATGTATGAG
195 ATATATGTGGTAAAGCCGAATGGCTAATGA-GAAATATGTAGGAG
51897503 ATATATATGTGGTAAAGCCGAATGGCTAATGTGAAAGATGTATGAG-ATATGTATATGTGGTAAA
1 ATATATATGTGGTAAAGCCGAATGGCTAATGTGAAAGATGTATGAGAATATGTATATGTGGTAAA
*
51897567 GCCGAATGGCTAATATGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATG
66 GCCGAATGGCTAATATGAAATATGTATGAGACATGTATATGTGGTAAAGCCGAATGGCTAATATG
* *
51897632 AAATATGTATGAGATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAGAGAT
131 AAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTAT-AGAGAT
* * *
51897697 GTATATTTGGTAAAGCCGAATGGCTAATGAGCAATATGTAGGAG
195 ATATATGTGGTAAAGCCGAATGGCTAATGAGAAATATGTAGGAG
51897741 AT
1 AT
51897743 GTGTGTATAT
Statistics
Matches: 226, Mismatches: 11, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
236 136 0.60
238 89 0.39
239 1 0.00
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.31
Consensus pattern (238 bp):
ATATATATGTGGTAAAGCCGAATGGCTAATGTGAAAGATGTATGAGAATATGTATATGTGGTAAA
GCCGAATGGCTAATATGAAATATGTATGAGACATGTATATGTGGTAAAGCCGAATGGCTAATATG
AAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATAGAGATA
TATATGTGGTAAAGCCGAATGGCTAATGAGAAATATGTAGGAG
Found at i:51901071 original size:56 final size:56
Alignment explanation
Indices: 51900985--51901090 Score: 194
Period size: 56 Copynumber: 1.9 Consensus size: 56
51900975 ACAAGGGATG
51900985 ATGGGAAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGAAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* *
51901041 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATA
1 ATGGGAAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATA
51901091 GACATGTTGT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.46, C:0.08, G:0.22, T:0.25
Consensus pattern (56 bp):
ATGGGAAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:51901098 original size:30 final size:30
Alignment explanation
Indices: 51901062--51901120 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
51901052 ATGTCATGAA
*
51901062 ACATGTTGTGTTAATGGAAGAATAAAATAG
1 ACATGTTGTGTTAATCGAAGAATAAAATAG
51901092 ACATGTTGTGTTAATCGAAGAATAAAATA
1 ACATGTTGTGTTAATCGAAGAATAAAATA
51901121 AGAAGCATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.44, C:0.05, G:0.20, T:0.31
Consensus pattern (30 bp):
ACATGTTGTGTTAATCGAAGAATAAAATAG
Found at i:51901151 original size:86 final size:86
Alignment explanation
Indices: 51901006--51901176 Score: 315
Period size: 86 Copynumber: 2.0 Consensus size: 86
51900996 ATGTCATGAA
* *
51901006 ACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAAACATGTCATGAAACATGTTGT
1 ACATGTTGTGTTAATCGAAAAATAAAATAAGAAGCATGGGCAAAACATGCCATGAAACATGTTGT
51901071 GTTAATGGAAGAATAAAATAG
66 GTTAATGGAAGAATAAAATAG
*
51901092 ACATGTTGTGTTAATCGAAGAATAAAATAAGAAGCATGGGCAAAACATGCCATGAAACATGTTGT
1 ACATGTTGTGTTAATCGAAAAATAAAATAAGAAGCATGGGCAAAACATGCCATGAAACATGTTGT
51901157 GTTAATGGAAGAATAAAATA
66 GTTAATGGAAGAATAAAATA
51901177 AGAAGCATGG
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
86 82 1.00
ACGTcount: A:0.45, C:0.08, G:0.22, T:0.25
Consensus pattern (86 bp):
ACATGTTGTGTTAATCGAAAAATAAAATAAGAAGCATGGGCAAAACATGCCATGAAACATGTTGT
GTTAATGGAAGAATAAAATAG
Found at i:51902556 original size:40 final size:40
Alignment explanation
Indices: 51902318--51902542 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
51902308 TCGAATGATG
* * * *
51902318 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
51902358 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51902398 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51902437 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51902477 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51902518 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51902543 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51917438 original size:56 final size:56
Alignment explanation
Indices: 51917348--51917523 Score: 325
Period size: 56 Copynumber: 3.1 Consensus size: 56
51917338 ACAAGGGATG
* *
51917348 ATGGGCAAAACATGTCATGAAACATGTTGCGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
51917404 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
*
51917460 ATTGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
51917516 ATGGGCAA
1 ATGGGCAA
51917524 TAAACTAATA
Statistics
Matches: 116, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 116 1.00
ACGTcount: A:0.45, C:0.10, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:51918882 original size:80 final size:78
Alignment explanation
Indices: 51918690--51918907 Score: 244
Period size: 80 Copynumber: 2.7 Consensus size: 78
51918680 AAGTGACCAT
* * * *
51918690 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCAT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTAAATCC-GGTTAAGTCCCGAAGCCAT
51918753 TGGTGCGAGTTACTAA
63 TGGTGCGAGTTACTAA
*
51918769 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGAGTTAAGTCCCGAAGCCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAATCCG-GTTAAGTCCCGAAGCCATT
*
51918834 TGTGCGAGTTACTATA
64 GGTGCGAGTTACTA-A
* ** * * *
51918850 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTAAATCCGGTTAAGTCCCGAAG
51918908 GTACGTGATT
Statistics
Matches: 120, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.02
79 57 0.47
80 59 0.49
81 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (78 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAATCCGGTTAAGTCCCGAAGCCATTGG
TGCGAGTTACTAA
Found at i:51918889 original size:40 final size:40
Alignment explanation
Indices: 51918653--51918875 Score: 274
Period size: 40 Copynumber: 5.6 Consensus size: 40
51918643 GAATGATGTT
* * * *
51918653 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATC
* * *
51918693 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
51918733 CGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
51918772 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
* * *
51918812 CGAGTTAAGTCCCGAAGCCATTTGTGCGAGTTACTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
*
51918852 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
51918876 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 34 0.21
40 115 0.72
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:51921759 original size:26 final size:26
Alignment explanation
Indices: 51921729--51921780 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
51921719 CACACAAGTG
* *
51921729 AGTCATTTACGCACGAAGGGCAAAAT
1 AGTCATTAACACACGAAGGGCAAAAT
* *
51921755 AGTCATTAACACCCTAAGGGCAAAAT
1 AGTCATTAACACACGAAGGGCAAAAT
51921781 GGAAATTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.19
Consensus pattern (26 bp):
AGTCATTAACACACGAAGGGCAAAAT
Found at i:51921814 original size:27 final size:27
Alignment explanation
Indices: 51921784--51921980 Score: 250
Period size: 27 Copynumber: 7.3 Consensus size: 27
51921774 GCAAAATGGA
* * * **
51921784 AATTTTACCCCACAAGGGTATCTCATT
1 AATTCTACCCTACAAGGGTATTTCGGT
51921811 AATTCTACCCTACAAGGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTCGGT
*
51921838 ATTTCTACCCTACAAGGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTCGGT
* *
51921865 AATTCTATCCTACAGGGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTCGGT
* **
51921892 AATTCTACCCTACAGGGGTATTTCAAT
1 AATTCTACCCTACAAGGGTATTTCGGT
*
51921919 AATTCTACCCTACAGGGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTCGGT
* * * *
51921946 AATTCTACCTTATAGGGGTATTTTGGT
1 AATTCTACCCTACAAGGGTATTTCGGT
51921973 AATTCTAC
1 AATTCTAC
51921981 AACTTATCCA
Statistics
Matches: 153, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 153 1.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
AATTCTACCCTACAAGGGTATTTCGGT
Found at i:51924318 original size:24 final size:24
Alignment explanation
Indices: 51924235--51924320 Score: 82
Period size: 24 Copynumber: 3.5 Consensus size: 24
51924225 AAGAAATTTC
* * * *
51924235 AGCACTATGTGTGCGAGGTTATGC
1 AGCACTATGTGTGCAAGATTACGT
* *
51924259 AGCACTATGTGTGCAAAAACTACGT
1 AGCACTATGTGTGC-AAGATTACGT
* * *
51924284 GGCACTCTGTGTGCAAGATTACAT
1 AGCACTATGTGTGCAAGATTACGT
51924308 AGCACTATGTGTG
1 AGCACTATGTGTG
51924321 TGAGGAAACG
Statistics
Matches: 48, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
24 32 0.67
25 16 0.33
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (24 bp):
AGCACTATGTGTGCAAGATTACGT
Found at i:51927508 original size:27 final size:26
Alignment explanation
Indices: 51927491--51927560 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 26
51927481 ATATTAAGTC
*
51927491 CGCACACTCAGTGTTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
51927518 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
51927546 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
51927561 GTACAATTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:51927554 original size:28 final size:28
Alignment explanation
Indices: 51927491--51927588 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
51927481 ATATTAAGTC
* *
51927491 CGCACACTCAGTGTTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
51927518 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
51927546 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
51927575 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51927589 CAATCTCATG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 21 0.33
28 23 0.37
29 19 0.30
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51939392 original size:28 final size:28
Alignment explanation
Indices: 51939360--51939487 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
51939350 ATAGTAAGTC
*
51939360 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
51939388 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
51939417 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
51939445 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
51939474 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51939488 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51939450 original size:57 final size:57
Alignment explanation
Indices: 51939359--51939487 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
51939349 TATAGTAAGT
*
51939359 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
51939416 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
51939473 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
51939488 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:51944174 original size:27 final size:26
Alignment explanation
Indices: 51944127--51944180 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
51944117 TCACACAAGT
*
51944127 TAGTCATTTACACACGAGGGGCAAAA
1 TAGTCATTTACACACGAGGGGAAAAA
* *
51944153 TAGTCATTTAACACCCTAGGGGAAAAA
1 TAGTCATTT-ACACACGAGGGGAAAAA
51944180 T
1 T
51944181 GGAAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (26 bp):
TAGTCATTTACACACGAGGGGAAAAA
Found at i:51944214 original size:27 final size:27
Alignment explanation
Indices: 51944184--51944351 Score: 203
Period size: 27 Copynumber: 6.2 Consensus size: 27
51944174 GAAAAATGGA
* * * *
51944184 AATTTTACCCCACAAGGGTATCTCGAT
1 AATTCTACCCTACAGGGGTATTTCGAT
* *
51944211 AATTCTACCCTATAGGGGTATTTCGGT
1 AATTCTACCCTACAGGGGTATTTCGAT
* * *
51944238 ATTTCTACCCTACAAGGGTATTTC-AGC
1 AATTCTACCCTACAGGGGTATTTCGA-T
* *
51944265 AATTCTATCCTACAGGGGTATTTCGGT
1 AATTCTACCCTACAGGGGTATTTCGAT
*
51944292 AATTCTACCCTACAGGGGTATTTCAAT
1 AATTCTACCCTACAGGGGTATTTCGAT
*
51944319 AATTCTACCCTACAGGGGTATTTCGGT
1 AATTCTACCCTACAGGGGTATTTCGAT
51944346 AATTCT
1 AATTCT
51944352 CCAACTTACC
Statistics
Matches: 118, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.35
Consensus pattern (27 bp):
AATTCTACCCTACAGGGGTATTTCGAT
Found at i:51944247 original size:54 final size:53
Alignment explanation
Indices: 51944184--51944351 Score: 237
Period size: 54 Copynumber: 3.1 Consensus size: 53
51944174 GAAAAATGGA
* * * *
51944184 AATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTATAGGGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTC-ATAATTCTACCCTACAGGGGTATTTCGGT
* * *
51944238 ATTTCTACCCTACAAGGGTATTTCAGCAATTCTATCCTACAGGGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTCA-TAATTCTACCCTACAGGGGTATTTCGGT
*
51944292 AATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTC-ATAATTCTACCCTACAGGGGTATTTCGGT
51944346 AATTCT
1 AATTCT
51944352 CCAACTTACC
Statistics
Matches: 101, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
53 1 0.01
54 99 0.98
55 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.35
Consensus pattern (53 bp):
AATTCTACCCTACAAGGGTATTTCATAATTCTACCCTACAGGGGTATTTCGGT
Found at i:51944302 original size:81 final size:81
Alignment explanation
Indices: 51944199--51944351 Score: 225
Period size: 81 Copynumber: 1.9 Consensus size: 81
51944189 TACCCCACAA
* ** *
51944199 GGGTATCTCGATAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAG
1 GGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCAG
51944264 CAATTCTATCCTACAG
66 CAATTCTATCCTACAG
* * * *
51944280 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGG
1 GGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCAG
*
51944345 TAATTCT
66 CAATTCT
51944352 CCAACTTACC
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (81 bp):
GGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCAG
CAATTCTATCCTACAG
Found at i:51948561 original size:39 final size:39
Alignment explanation
Indices: 51948517--51948592 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
51948507 AATTATATTA
*
51948517 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATAC
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCAGATACATAC
*
51948556 CCAGCACGAAGCCTGCGGGACTTTAGCCCAGATACAT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCAGATACAT
51948593 TTCTAGTGTC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.28, C:0.33, G:0.24, T:0.16
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGACTTTAGCCCAGATACATAC
Found at i:51958270 original size:47 final size:47
Alignment explanation
Indices: 51958170--51958499 Score: 507
Period size: 47 Copynumber: 6.9 Consensus size: 47
51958160 TAGTATCGCG
*
51958170 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
51958219 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
51958266 TAATGGCCGATGTGATGAATGCGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
51958313 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
* *
51958362 TGATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
51958409 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
51958456 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51958500 TCCCGAAGGG
Statistics
Matches: 260, Mismatches: 19, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
47 187 0.72
49 73 0.28
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:51958281 original size:22 final size:22
Alignment explanation
Indices: 51958253--51958328 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
51958243 AAGTGTATAT
51958253 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* ** ****
51958275 ATGTGATGAATGCGAAAGTGTATAT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
51958300 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
51958322 ATGTGAT
1 ATGTGAT
51958329 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:51958348 original size:96 final size:94
Alignment explanation
Indices: 51958170--51958499 Score: 507
Period size: 96 Copynumber: 3.5 Consensus size: 94
51958160 TAGTATCGCG
*
51958170 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
51958235 GAATGTGAAAGTGTATATATGTGATAAGGCC
64 GAATGTGAAAGTGTATATATGTGATAAGGCC
*
51958266 TAATGGCCGATGTGATGAATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51958331 ATGTGAAAGTGTATATATATGTGATAAGGCT
66 ATGTGAAAGTG--TATATATGTGATAAGGCC
* *
51958362 TGATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
51958427 ATGTGAAAGTGTATATATGTGACAGGGCC
66 ATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
51958456 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51958500 TCCCGAAGGG
Statistics
Matches: 215, Mismatches: 17, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
94 97 0.45
96 118 0.55
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (94 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:51958428 original size:143 final size:143
Alignment explanation
Indices: 51958170--51958499 Score: 538
Period size: 143 Copynumber: 2.3 Consensus size: 143
51958160 TAGTATCGCG
* *
51958170 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
51958235 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGTATAT
66 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGTATAT
*
51958300 ATGTGATAAGGCC
131 ATGTGACAAGGCC
* *
51958313 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTGATAGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
*
51958378 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGTATAT
*
51958443 ATGTGACAGGGCC
131 ATGTGACAAGGCC
* * * * *
51958456 GAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
51958500 TCCCGAAGGG
Statistics
Matches: 175, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
141 10 0.06
142 1 0.01
143 164 0.94
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (143 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGTATAT
ATGTGACAAGGCC
Found at i:51958674 original size:37 final size:37
Alignment explanation
Indices: 51958618--51958696 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
51958608 CCGAGCTCTA
* *
51958618 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
51958655 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51958692 AAGAC
1 AAGAC
51958697 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51960780 original size:10 final size:10
Alignment explanation
Indices: 51960752--51960810 Score: 66
Period size: 10 Copynumber: 5.9 Consensus size: 10
51960742 AATTTTAGCT
*
51960752 TTTATCTTCA
1 TTTATCTTTA
51960762 TTTATCTTTA
1 TTTATCTTTA
*
51960772 ATTATCTTTA
1 TTTATCTTTA
* *
51960782 ATTATATTTA
1 TTTATCTTTA
51960792 TTTAT-TTGTA
1 TTTATCTT-TA
51960802 TTTATCTTT
1 TTTATCTTT
51960811 TACAATTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.66
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:51964589 original size:15 final size:16
Alignment explanation
Indices: 51964569--51964608 Score: 64
Period size: 15 Copynumber: 2.5 Consensus size: 16
51964559 CCCAATTTTG
51964569 TTTTATTTATATAT-T
1 TTTTATTTATATATAT
51964584 TTTTATTTATATATAT
1 TTTTATTTATATATAT
51964600 TTTCTATTT
1 TTT-TATTT
51964609 TCTTTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 14 0.61
16 4 0.17
17 5 0.22
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTATTTATATATAT
Found at i:51965574 original size:100 final size:100
Alignment explanation
Indices: 51965412--51965591 Score: 263
Period size: 100 Copynumber: 1.8 Consensus size: 100
51965402 TGTTGGACTG
* * * * *
51965412 AGTAACCGGGGTGGGGTGCTTGGCTGTCATCTCTCTTCACGTCAAAAGTTTCGACATGTTCTTAA
1 AGTAACCAGGGTGGGGTGCTTGGCTGTCATCTCTCTTCACATCAAAAGGTTCAACATATTCTTAA
*
51965477 G-AAAAATATAAAAAAATTAGGAGTATGCTGGGCTA
66 GCAAAAA-AGAAAAAAATTAGGAGTATGCTGGGCTA
* * *
51965512 AGTAACCAGGGTGGGGTGTTTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCAATATATTCTTAA
1 AGTAACCAGGGTGGGGTGCTTGGCTGTCATCTCTCTTCACATCAAAAGGTTCAACATATTCTTAA
51965577 GCAAAAAAGAAAAAA
66 GCAAAAAAGAAAAAA
51965592 GAGAAAAAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
100 65 0.93
101 5 0.07
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.28
Consensus pattern (100 bp):
AGTAACCAGGGTGGGGTGCTTGGCTGTCATCTCTCTTCACATCAAAAGGTTCAACATATTCTTAA
GCAAAAAAGAAAAAAATTAGGAGTATGCTGGGCTA
Done.