Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 170 of 344
Found at i:56907180 original size:13 final size:13
Alignment explanation
Indices: 56907162--56907199 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
56907152 AAGTAATCAC
56907162 ACACGGGCGTGTT
1 ACACGGGCGTGTT
56907175 ACACGGGCGTGTT
1 ACACGGGCGTGTT
56907188 ACACGGGCGTGT
1 ACACGGGCGTGT
56907200 CCCTGCCGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.16, C:0.24, G:0.39, T:0.21
Consensus pattern (13 bp):
ACACGGGCGTGTT
Found at i:56914324 original size:16 final size:17
Alignment explanation
Indices: 56914292--56914329 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
56914282 CCTTCATTAA
56914292 GTTTTTAAGACTCATTT
1 GTTTTTAAGACTCATTT
* *
56914309 -TTTTTAAGATTTATTT
1 GTTTTTAAGACTCATTT
56914325 GTTTT
1 GTTTT
56914330 CCTTTTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.21, C:0.05, G:0.11, T:0.63
Consensus pattern (17 bp):
GTTTTTAAGACTCATTT
Found at i:56921475 original size:26 final size:26
Alignment explanation
Indices: 56921452--56921504 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
56921442 CTTATTTTCT
*
56921452 TCCTCATTTTTATCTATAACTTTTAA
1 TCCTCATTTTTATCAATAACTTTTAA
56921478 TCCTCATTTTTATCAATAACTTTTAA
1 TCCTCATTTTTATCAATAACTTTTAA
56921504 T
1 T
56921505 TTTCTTATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.00, T:0.53
Consensus pattern (26 bp):
TCCTCATTTTTATCAATAACTTTTAA
Found at i:56925583 original size:24 final size:24
Alignment explanation
Indices: 56925556--56925657 Score: 125
Period size: 24 Copynumber: 4.2 Consensus size: 24
56925546 CCATTAAGGT
* *
56925556 GTATTCTGTAAGTTCCTTTGTGAC
1 GTATTCTATAAGTGCCTTTGTGAC
* * *
56925580 GTATTCTATAAGTACCTTTCTGGC
1 GTATTCTATAAGTGCCTTTGTGAC
*
56925604 GTATTCTATAAGTGCCTTTGTGGC
1 GTATTCTATAAGTGCCTTTGTGAC
*
56925628 GTATTCTGTAAGTGCCTTTGT-AGC
1 GTATTCTATAAGTGCCTTTGTGA-C
56925652 GTATTC
1 GTATTC
56925658 GGGAATGCCT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
24 69 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.43
Consensus pattern (24 bp):
GTATTCTATAAGTGCCTTTGTGAC
Found at i:56925608 original size:48 final size:48
Alignment explanation
Indices: 56925556--56925657 Score: 141
Period size: 48 Copynumber: 2.1 Consensus size: 48
56925546 CCATTAAGGT
* * *
56925556 GTATTCTGTAAGTTCCTTTGTGACGTATTCTATAAGTACCTTTCTGGC
1 GTATTCTATAAGTGCCTTTGTGACGTATTCTATAAGTACCTTTCTAGC
* * * *
56925604 GTATTCTATAAGTGCCTTTGTGGCGTATTCTGTAAGTGCCTTTGTAGC
1 GTATTCTATAAGTGCCTTTGTGACGTATTCTATAAGTACCTTTCTAGC
56925652 GTATTC
1 GTATTC
56925658 GGGAATGCCT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.43
Consensus pattern (48 bp):
GTATTCTATAAGTGCCTTTGTGACGTATTCTATAAGTACCTTTCTAGC
Found at i:56927020 original size:16 final size:16
Alignment explanation
Indices: 56926999--56927032 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
56926989 AGAAATAGAA
56926999 GGCATGAAAAGAGGAG
1 GGCATGAAAAGAGGAG
56927015 GGCATGAAAAGAGGAG
1 GGCATGAAAAGAGGAG
56927031 GG
1 GG
56927033 GCTGGACCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.06, G:0.47, T:0.06
Consensus pattern (16 bp):
GGCATGAAAAGAGGAG
Found at i:56931902 original size:22 final size:22
Alignment explanation
Indices: 56931876--56931920 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
56931866 ATTATGTGTA
56931876 TTAATTCATAATATAA-TTAATT
1 TTAATT-ATAATATAATTTAATT
* *
56931898 TTAATTTTAATCTAATTTAATT
1 TTAATTATAATATAATTTAATT
56931920 T
1 T
56931921 GGGTTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTATAATATAATTTAATT
Found at i:56954025 original size:22 final size:23
Alignment explanation
Indices: 56953956--56954036 Score: 103
Period size: 23 Copynumber: 3.6 Consensus size: 23
56953946 TAGCTCATAT
56953956 GAGCTTACCGTTTCATCTCTTCAG
1 GAGCTTACCGTTTCATCTCTTC-G
* * *
56953980 G-GCTTACTGTTTTATCTCTACG
1 GAGCTTACCGTTTCATCTCTTCG
*
56954002 GAGCTTACCG-TTCAGCTCTTCG
1 GAGCTTACCGTTTCATCTCTTCG
56954024 GAGCTTACCGTTT
1 GAGCTTACCGTTT
56954037 ATCAGCTCAG
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
22 21 0.44
23 26 0.54
24 1 0.02
ACGTcount: A:0.15, C:0.27, G:0.20, T:0.38
Consensus pattern (23 bp):
GAGCTTACCGTTTCATCTCTTCG
Found at i:56954225 original size:9 final size:9
Alignment explanation
Indices: 56954213--56954267 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
56954203 TAATAGCTAT
56954213 ATGAATTAC
1 ATGAATTAC
56954222 ATGAATT--
1 ATGAATTAC
56954229 AT-AAGTTAC
1 ATGAA-TTAC
*
56954238 ATGATTTAC
1 ATGAATTAC
*
56954247 ATGAATTAT
1 ATGAATTAC
*
56954256 ATGACTTAC
1 ATGAATTAC
56954265 ATG
1 ATG
56954268 GATAATATGA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
6 2 0.05
7 4 0.11
9 30 0.81
10 1 0.03
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.38
Consensus pattern (9 bp):
ATGAATTAC
Found at i:56954264 original size:18 final size:18
Alignment explanation
Indices: 56954238--56954277 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
56954228 TATAAGTTAC
* *
56954238 ATGATTTACATGAATTAT
1 ATGACTTACATGAATAAT
*
56954256 ATGACTTACATGGATAAT
1 ATGACTTACATGAATAAT
56954274 ATGA
1 ATGA
56954278 TACATGAGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.40, C:0.07, G:0.15, T:0.38
Consensus pattern (18 bp):
ATGACTTACATGAATAAT
Found at i:56961521 original size:18 final size:18
Alignment explanation
Indices: 56961498--56961541 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
56961488 ATATAATAGC
56961498 TATATGATTTACATGAAT
1 TATATGATTTACATGAAT
* *
56961516 TATATGAATTACATGGAT
1 TATATGATTTACATGAAT
*
56961534 AATATGAT
1 TATATGAT
56961542 ACATGAGATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.41, C:0.05, G:0.14, T:0.41
Consensus pattern (18 bp):
TATATGATTTACATGAAT
Found at i:56963586 original size:20 final size:20
Alignment explanation
Indices: 56963558--56963616 Score: 64
Period size: 24 Copynumber: 2.7 Consensus size: 20
56963548 TCATGTTGAG
*
56963558 TAAAATGATGAAATAAGGGT
1 TAAATTGATGAAATAAGGGT
56963578 TAAATTGATAGATGAAATAAGGGT
1 TAAA-T--T-GATGAAATAAGGGT
56963602 TAAATTGATAGAAAT
1 TAAATTGAT-GAAAT
56963617 TCAAGTTAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
20 7 0.21
21 6 0.18
23 2 0.06
24 18 0.55
ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29
Consensus pattern (20 bp):
TAAATTGATGAAATAAGGGT
Found at i:56963596 original size:24 final size:24
Alignment explanation
Indices: 56963564--56963613 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
56963554 TGAGTAAAAT
56963564 GATGAAATAAGGGTTAAATTGATA
1 GATGAAATAAGGGTTAAATTGATA
56963588 GATGAAATAAGGGTTAAATTGATA
1 GATGAAATAAGGGTTAAATTGATA
56963612 GA
1 GA
56963614 AATTCAAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.00, G:0.26, T:0.28
Consensus pattern (24 bp):
GATGAAATAAGGGTTAAATTGATA
Found at i:56965921 original size:46 final size:46
Alignment explanation
Indices: 56965864--56966091 Score: 332
Period size: 46 Copynumber: 5.0 Consensus size: 46
56965854 AGTGTGCTCT
*
56965864 CTGAAATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
56965910 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
56965956 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
56966002 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
56966048 ATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATACTATGGCA
1 CTGACATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
56966092 TCATGTCGAA
Statistics
Matches: 170, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.01
46 169 0.99
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:56971408 original size:49 final size:48
Alignment explanation
Indices: 56971331--56971518 Score: 241
Period size: 49 Copynumber: 3.8 Consensus size: 48
56971321 TAGCCGAAAC
*
56971331 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* * * *
56971379 TAATCTGGTACACGTAGTAGCCTGTACTTAGTACTACACGTGTGATCACAA
1 T-ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAA
* * *
56971430 TTTTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* *
56971479 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 -TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
56971519 CGTGACCTCA
Statistics
Matches: 118, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
48 1 0.01
49 73 0.62
50 6 0.05
51 38 0.32
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (48 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
Found at i:56971452 original size:100 final size:100
Alignment explanation
Indices: 56971336--56971517 Score: 337
Period size: 100 Copynumber: 1.8 Consensus size: 100
56971326 GAAACTATCT
*
56971336 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
*
56971401 TGTACTTAGTACTACACGTGTGATCACAATTTTTG
66 TGCACTTAGTACTACACGTGTGATCACAATTTTTG
*
56971436 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
56971501 TGCACTTAGTACTACAC
66 TGCACTTAGTACTACAC
56971518 ACGTGACCTC
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACGTGTGATCACAATTTTTG
Found at i:56975068 original size:11 final size:10
Alignment explanation
Indices: 56975048--56975072 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
56975038 TGTGGTTTAT
56975048 AAAAATAAAA
1 AAAAATAAAA
56975058 AAAAATAAAA
1 AAAAATAAAA
56975068 AAAAA
1 AAAAA
56975073 CAACACTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (10 bp):
AAAAATAAAA
Found at i:56975680 original size:26 final size:24
Alignment explanation
Indices: 56975635--56975686 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
56975625 TATTTATTTT
*
56975635 ATTTTAAATATTAATAATTATAAAA
1 ATTTTAAATATAAATAATTA-AAAA
56975660 ATTTTAAAATATCAAAT-ATTAAAAA
1 ATTTT-AAATAT-AAATAATTAAAAA
56975685 AT
1 AT
56975687 AAAGAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 11 0.46
26 10 0.42
27 3 0.12
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
ATTTTAAATATAAATAATTAAAAA
Found at i:56982917 original size:18 final size:18
Alignment explanation
Indices: 56982894--56982939 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
56982884 GAGTTAAACG
*
56982894 AATCGAATTATTCGAGTT
1 AATCGAATTATTCGAGTC
*
56982912 AATCGAGTTATTCGAGTC
1 AATCGAATTATTCGAGTC
56982930 AACTCGAATT
1 AA-TCGAATT
56982940 TTTTTTTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 18 0.75
19 6 0.25
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (18 bp):
AATCGAATTATTCGAGTC
Found at i:56983265 original size:30 final size:29
Alignment explanation
Indices: 56983216--56983272 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
56983206 AACTTTTTAT
* *
56983216 TTTCTCCCTAAAATTTTACTCCCTTCCAC
1 TTTCCCCCCAAAATTTTACTCCCTTCCAC
*
56983245 TTTCCCCCCAAAACTTTTACTTCCTTCC
1 TTTCCCCCCAAAA-TTTTACTCCCTTCC
56983273 CATCCCACGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.19, C:0.40, G:0.00, T:0.40
Consensus pattern (29 bp):
TTTCCCCCCAAAATTTTACTCCCTTCCAC
Found at i:57004079 original size:51 final size:51
Alignment explanation
Indices: 57004003--57004106 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
57003993 TAATGAGTAG
*
57004003 GACCATGGATGAAAGGCTCTATGGCATCATATGATAGTATGTCATGATGGC
1 GACCATGGATGAAAGGCTCTATGGCATCATATGATAGTACGTCATGATGGC
57004054 GACCATGGATGAAAGGCTCTATGGCATCATATGATAGTACGTCATGATGGC
1 GACCATGGATGAAAGGCTCTATGGCATCATATGATAGTACGTCATGATGGC
57004105 GA
1 GA
57004107 ATCAGTGTAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (51 bp):
GACCATGGATGAAAGGCTCTATGGCATCATATGATAGTACGTCATGATGGC
Found at i:57007905 original size:39 final size:39
Alignment explanation
Indices: 57007748--57007917 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 39
57007738 GGACTAAGAT
* * *
57007748 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGTTACTAAA-TCCGGGTTATGTC
* * *
57007788 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
*
57007828 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * * *
57007868 CCGAAGGCATTGTGTGAGTTACTAAAACCAGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
57007907 CCGAAGGCATT
1 CCGAAGGCATT
57007918 TGAACGAGGA
Statistics
Matches: 116, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
39 37 0.32
40 75 0.65
41 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:57011560 original size:41 final size:41
Alignment explanation
Indices: 57011394--57011549 Score: 235
Period size: 41 Copynumber: 3.8 Consensus size: 41
57011384 TTTATCGTTA
* * * *
57011394 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
57011435 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
57011476 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
57011517 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
57011550 AAGAGCCGGT
Statistics
Matches: 107, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 102 0.95
42 2 0.02
43 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:57011820 original size:33 final size:32
Alignment explanation
Indices: 57011764--57011827 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
57011754 ATAGATATGT
57011764 ATATATATATATGTTGCATTCGGCATAGGTGG
1 ATATATATATATGTTGCATTCGGCATAGGTGG
* *
57011796 ATATATTTATGTGTATGCATTCGGCATAGGTG
1 ATATATATATATGT-TGCATTCGGCATAGGTG
57011828 AAAATAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (32 bp):
ATATATATATATGTTGCATTCGGCATAGGTGG
Found at i:57011844 original size:33 final size:33
Alignment explanation
Indices: 57011771--57011844 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
57011761 TGTATATATA
* * **
57011771 TATATGT-TGCATTCGGCATAGGTGGATATATT
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
57011803 TATGTGTATGCATTCGGCATAGGTGAAAATAAG
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
57011836 TGTATGTAT
1 TATATGTAT
57011845 CTATGCATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (33 bp):
TATATGTATGCATTCGGCATAGGTGAAAATAAG
Found at i:57019188 original size:41 final size:41
Alignment explanation
Indices: 57019022--57019177 Score: 226
Period size: 41 Copynumber: 3.8 Consensus size: 41
57019012 TTTATCGTTA
* * * *
57019022 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
57019063 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
57019104 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
* *
57019145 GTGACACATTTCGGACTATAAGTCTAGTAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
57019178 AAGAGCCGGT
Statistics
Matches: 106, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 101 0.95
42 2 0.02
43 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:57019448 original size:33 final size:32
Alignment explanation
Indices: 57019392--57019455 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
57019382 ATAGATATGT
57019392 ATATATATATATGTTGCATTCGGCATAGGTGG
1 ATATATATATATGTTGCATTCGGCATAGGTGG
* *
57019424 ATATATTTATGTGTATGCATTCGGCATAGGTG
1 ATATATATATATGT-TGCATTCGGCATAGGTG
57019456 AAAATAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (32 bp):
ATATATATATATGTTGCATTCGGCATAGGTGG
Found at i:57019472 original size:33 final size:33
Alignment explanation
Indices: 57019399--57019472 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
57019389 TGTATATATA
* * **
57019399 TATATGT-TGCATTCGGCATAGGTGGATATATT
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
57019431 TATGTGTATGCATTCGGCATAGGTGAAAATAAG
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
57019464 TGTATGTAT
1 TATATGTAT
57019473 CTATGCATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (33 bp):
TATATGTATGCATTCGGCATAGGTGAAAATAAG
Found at i:57020293 original size:40 final size:40
Alignment explanation
Indices: 57020223--57020420 Score: 258
Period size: 40 Copynumber: 5.0 Consensus size: 40
57020213 GGGTGTTACA
* *
57020223 GCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAG
1 GCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAG
* *
57020263 GCATTTGTGCGAGTTACTATATCCGAGCTAAGTCTCGAAG
1 GCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAG
* *
57020303 GCATTTGTGCTAGTTACTATATCCGGGCTAGGTCCCGAAG
1 GCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAG
* *
57020343 GCATTTGTGCGAGTTACTATAACTGGGCTAAGTCCCGAAG
1 GCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAG
* * *
57020383 ACATTTGAGCGAG-TAGCTATATCC-GGCTAAATCCCGAA
1 GCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAA
57020421 TGTACTTGGT
Statistics
Matches: 139, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 15 0.11
40 123 0.88
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
GCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAG
Found at i:57023630 original size:20 final size:21
Alignment explanation
Indices: 57023599--57023660 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 21
57023589 TGAATGCACA
*
57023599 CACGTGCCCCTGTTTGTACTT
1 CACGTACCCCTGTTTGTACTT
* *
57023620 CA-GTACCCCTGATTGTACAT
1 CACGTACCCCTGTTTGTACTT
* *
57023640 -ACGTGCCCCTGTTTATACTT
1 CACGTACCCCTGTTTGTACTT
57023660 C
1 C
57023661 GATAATTTCA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
19 1 0.03
20 29 0.91
21 2 0.06
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.35
Consensus pattern (21 bp):
CACGTACCCCTGTTTGTACTT
Found at i:57026764 original size:21 final size:21
Alignment explanation
Indices: 57026740--57026783 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
57026730 GAAAAATTAT
*
57026740 TAAAATATTTCTATT-TAAAAA
1 TAAAATATAT-TATTATAAAAA
*
57026761 TAAATTATATTATTATAAAAA
1 TAAAATATATTATTATAAAAA
57026782 TA
1 TA
57026784 TGTTTTTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
TAAAATATATTATTATAAAAA
Found at i:57035810 original size:6 final size:6
Alignment explanation
Indices: 57035801--57035864 Score: 128
Period size: 6 Copynumber: 10.7 Consensus size: 6
57035791 ATGGAGATGG
57035801 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
1 AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA AGGTCA
57035849 AGGTCA AGGTCA AGGT
1 AGGTCA AGGTCA AGGT
57035865 GGGACATAGA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 58 1.00
ACGTcount: A:0.33, C:0.16, G:0.34, T:0.17
Consensus pattern (6 bp):
AGGTCA
Found at i:57038655 original size:15 final size:15
Alignment explanation
Indices: 57038635--57038702 Score: 82
Period size: 16 Copynumber: 4.4 Consensus size: 15
57038625 TAAATAATTA
57038635 ATTTAACATTAAAAT
1 ATTTAACATTAAAAT
* *
57038650 ATTTAATATCAACAAT
1 ATTTAACATTAA-AAT
57038666 ATTTAACATTAAAAT
1 ATTTAACATTAAAAT
* *
57038681 ATTTAATATAAAAAAT
1 ATTTAACAT-TAAAAT
57038697 ATTTAA
1 ATTTAA
57038703 TAACATAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
15 21 0.47
16 24 0.53
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTTAACATTAAAAT
Found at i:57038668 original size:16 final size:16
Alignment explanation
Indices: 57038645--57038718 Score: 87
Period size: 16 Copynumber: 4.6 Consensus size: 16
57038635 ATTTAACATT
57038645 AAAATATTTAATATCA
1 AAAATATTTAATATCA
* * *
57038661 ACAATATTTAACAT-T
1 AAAATATTTAATATCA
*
57038676 AAAATATTTAATATAA
1 AAAATATTTAATATCA
*
57038692 AAAATATTTAATAACA
1 AAAATATTTAATATCA
57038708 TAAAATATTTA
1 -AAAATATTTA
57038719 TAAAATTATA
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
15 12 0.25
16 26 0.54
17 10 0.21
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (16 bp):
AAAATATTTAATATCA
Found at i:57038670 original size:31 final size:31
Alignment explanation
Indices: 57038635--57038702 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
57038625 TAAATAATTA
* *
57038635 ATTTAACATTAAAATATTTAATATCAACAAT
1 ATTTAACATTAAAATATTTAATATAAAAAAT
57038666 ATTTAACATTAAAATATTTAATATAAAAAAT
1 ATTTAACATTAAAATATTTAATATAAAAAAT
57038697 ATTTAA
1 ATTTAA
57038703 TAACATAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (31 bp):
ATTTAACATTAAAATATTTAATATAAAAAAT
Found at i:57038721 original size:16 final size:18
Alignment explanation
Indices: 57038638--57038735 Score: 81
Period size: 16 Copynumber: 5.9 Consensus size: 18
57038628 ATAATTAATT
57038638 TAACATTAAAATATTTAA
1 TAACATTAAAATATTTAA
* *
57038656 TATCA--ACAATA-TT--
1 TAACATTAAAATATTTAA
57038669 TAACATTAAAATATTTAA
1 TAACATTAAAATATTTAA
57038687 TATA-A--AAAATATTTAA
1 TA-ACATTAAAATATTTAA
57038703 TAACA-TAAAATATTT-A
1 TAACATTAAAATATTTAA
*
57038719 TAAAATTATAAATATTT
1 TAACATTA-AAATATTT
57038736 TTATAGAATT
Statistics
Matches: 65, Mismatches: 5, Indels: 20
0.72 0.06 0.22
Matches are distributed among these distances:
13 4 0.06
15 8 0.12
16 26 0.40
17 11 0.17
18 15 0.23
19 1 0.02
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (18 bp):
TAACATTAAAATATTTAA
Found at i:57046218 original size:27 final size:26
Alignment explanation
Indices: 57046132--57046275 Score: 171
Period size: 27 Copynumber: 5.4 Consensus size: 26
57046122 GAAAACTAAT
57046132 AACTGCCTTTGTGGTGTACTCTGAAAG
1 AACTGCCTTTGT-GTGTACTCTGAAAG
*
57046159 AATTGCCTTTGTGTGTACTCTGAAAG
1 AACTGCCTTTGTGTGTACTCTGAAAG
* * * * *
57046185 AATTGCCTTGGTGACGTTCTCTGAAGG
1 AACTGCCTTTGTG-TGTACTCTGAAAG
* *
57046212 AACTGCCTTTGTGGTGTACTTTGAAAT
1 AACTGCCTTTGT-GTGTACTCTGAAAG
*
57046239 AATTGCCTTTGTGGTGTACTCTGAAAG
1 AACTGCCTTTGT-GTGTACTCTGAAAG
57046266 AACTGCCTTT
1 AACTGCCTTT
57046276 ATGGCAAAAT
Statistics
Matches: 99, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
26 26 0.26
27 72 0.73
28 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (26 bp):
AACTGCCTTTGTGTGTACTCTGAAAG
Found at i:57046305 original size:80 final size:80
Alignment explanation
Indices: 57046132--57046336 Score: 211
Period size: 80 Copynumber: 2.5 Consensus size: 80
57046122 GAAAACTAAT
* * *
57046132 AACTGCCTTTGTGGTGTACTCTGAAAGAATTGCCTTTGTGTGTACTCTGAAAGAATTGCCTTGGT
1 AACTGCCTCTGTGGTGTACTCTGAAAGAATTGCCTTTGTGTGTACTCTGAAAGAACTGCCTTGAT
*** *
57046197 GACGTTCTCTGAAGG
66 GAAAATCTCTAAAGG
* * * *
57046212 AACTGCCTTTGTGGTGTACTTTGAAATAATTGCCTTTGTGGTGTACTCTGAAAGAACTGCCTTTA
1 AACTGCCTCTGTGGTGTACTCTGAAAGAATTGCCTTTGT-GTGTACTCTGAAAGAACTGCCTTGA
57046277 TGGCAAAATCT-TAAAGG
65 T-G-AAAATCTCTAAAGG
* **
57046294 AA-TG-CTCTGTGGTGTGA-TCTAAAAGAGGTGCCTTTGTTGTGTA
1 AACTGCCTCTGTGGTGT-ACTCTGAAAGAATTGCCTTTG-TGTGTA
57046337 TTTTGGGGGA
Statistics
Matches: 105, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
80 66 0.63
81 27 0.26
82 8 0.08
83 4 0.04
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (80 bp):
AACTGCCTCTGTGGTGTACTCTGAAAGAATTGCCTTTGTGTGTACTCTGAAAGAACTGCCTTGAT
GAAAATCTCTAAAGG
Found at i:57055342 original size:79 final size:80
Alignment explanation
Indices: 57055251--57055404 Score: 197
Period size: 79 Copynumber: 1.9 Consensus size: 80
57055241 AGCCCGGTTA
* * *
57055251 TAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCACAAA-GCCTTC
57055314 GGG-CTTAGCTCTGAAT
64 GGGACTTAGCTCTGAAT
* ** * *
57055330 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
57055395 GACTTAGCTC
66 GACTTAGCTC
57055405 GGACATCATT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
78 3 0.05
79 45 0.70
80 16 0.25
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.28
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCTCTGAAT
Found at i:57055344 original size:39 final size:40
Alignment explanation
Indices: 57055223--57055354 Score: 160
Period size: 40 Copynumber: 3.3 Consensus size: 40
57055213 GCTACTCGTT
* * *
57055223 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAAT-TAGTAACTCGCA
* *
57055263 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
* * * *
57055303 CAAATGCCTTCGGG-CTTAGCTCTGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
57055342 CAAATGCCTTCGG
1 CAAATGCCTTCGG
57055355 ATCTTAGTCC
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
39 33 0.40
40 47 0.57
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
Found at i:57062593 original size:39 final size:40
Alignment explanation
Indices: 57062472--57062652 Score: 167
Period size: 40 Copynumber: 4.5 Consensus size: 40
57062462 GCTACTCGTT
* *
57062472 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCTGGATT-TAGTAACTCGCA
* * *
57062512 CAATTGCCTTCGGGACTTA-ACTCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCT-GGATTTAGTAACTCGCA
* *
57062552 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCTGGATTTAGTAACTCGCA
* * * * *
57062591 CAAATGCCTTC-AGATCTTAGTCC-GGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCTGGATTTAGTAAC-TCGCA
57062632 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
57062653 CGGACATCAT
Statistics
Matches: 115, Mismatches: 18, Indels: 17
0.77 0.12 0.11
Matches are distributed among these distances:
38 1 0.01
39 32 0.28
40 68 0.59
41 14 0.12
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCTGGATTTAGTAACTCGCA
Found at i:57062617 original size:79 final size:81
Alignment explanation
Indices: 57062472--57062656 Score: 202
Period size: 79 Copynumber: 2.3 Consensus size: 81
57062462 GCTACTCGTT
* * * *
57062472 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACTCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAACTCGG
*
57062537 ATTTAGTAACTCA-CA
66 ATATAGTAACTCAGCA
* * *
57062552 CAAATGCCTTCGGG-CTTAGCCTGGA-ATTAGTATCTCGCACAAATGCCTTC-AGATCTT-AGTC
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGAGA-CTTAACT-
* * *
57062613 CGGATATGGTCACTTAGCA
63 CGGATATAGTAACTCAGCA
57062632 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57062657 CATCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
78 5 0.06
79 53 0.60
80 30 0.34
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAACTCGG
ATATAGTAACTCAGCA
Found at i:57065385 original size:47 final size:47
Alignment explanation
Indices: 57065331--57065735 Score: 693
Period size: 47 Copynumber: 8.6 Consensus size: 47
57065321 TATTTGAATA
57065331 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
57065378 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
57065425 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
57065474 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
57065521 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
57065568 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
57065615 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
57065662 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
57065709 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
57065736 TCCCGAAGGG
Statistics
Matches: 342, Mismatches: 14, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 297 0.87
49 45 0.13
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:57070469 original size:26 final size:26
Alignment explanation
Indices: 57070437--57070488 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
57070427 CATATTTGGC
57070437 CATAACA-AATATAAATTCTAACATTT
1 CATAACAGAATATAAATT-TAACATTT
**
57070463 CATAACAGCGTATAAATTTAACATTT
1 CATAACAGAATATAAATTTAACATTT
57070489 AATTACCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (26 bp):
CATAACAGAATATAAATTTAACATTT
Found at i:57071688 original size:28 final size:27
Alignment explanation
Indices: 57071645--57071751 Score: 74
Period size: 28 Copynumber: 3.7 Consensus size: 27
57071635 GAATTTAGTG
57071645 TTAAT-TGGGCCTTAGCCCATATCAGTA
1 TTAATCTGGGCC-TAGCCCATATCAGTA
*
57071672 TTAATCTGGGCCATAGCCC-TATTACAATA
1 TTAATCTGGGCC-TAGCCCATA-T-CAGTA
*
57071701 TCAGAGCATACTGGGCCTAGCCCATATCAGTA
1 T--TA--AT-CTGGGCCTAGCCCATATCAGTA
* *
57071733 TCAGTCTGGGCCGTAGCCC
1 TTAATCTGGGCC-TAGCCC
57071752 TATTACAAGT
Statistics
Matches: 64, Mismatches: 6, Indels: 19
0.72 0.07 0.21
Matches are distributed among these distances:
27 14 0.22
28 20 0.31
29 5 0.08
30 1 0.02
31 1 0.02
32 5 0.08
33 9 0.14
34 9 0.14
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (27 bp):
TTAATCTGGGCCTAGCCCATATCAGTA
Found at i:57071823 original size:19 final size:20
Alignment explanation
Indices: 57071780--57071835 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
57071770 ATTGGGTCTT
57071780 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
57071800 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
* *
57071819 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
57071836 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:57084711 original size:40 final size:40
Alignment explanation
Indices: 57084618--57084835 Score: 275
Period size: 40 Copynumber: 5.5 Consensus size: 40
57084608 AAGCCAAGTA
* * *
57084618 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
57084656 CCTTCGAGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
57084696 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
57084736 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
57084776 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
*
57084817 CCTTCGAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
57084836 TTATCATCCA
Statistics
Matches: 160, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
38 11 0.07
39 17 0.11
40 105 0.66
41 23 0.14
42 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:57095856 original size:39 final size:40
Alignment explanation
Indices: 57095737--57095913 Score: 193
Period size: 39 Copynumber: 4.5 Consensus size: 40
57095727 TTCGAATGAT
* *
57095737 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACTATA
* * * * *
57095778 ACCGGACTAAGATCCGAAGGCA-TTCTGCGAGTTG-CTATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACTATA
* *
57095817 TCTGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATA
* *
57095856 TCCGGGCTAAGTCCCGAA-GCATTTATGCTAGTGACTATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATA
57095895 TCCGGGCTAAGGA-CCGAAG
1 TCCGGGCTAA-GACCCGAAG
57095914 CCTTGTGCAA
Statistics
Matches: 111, Mismatches: 19, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
38 14 0.13
39 64 0.58
40 16 0.14
41 17 0.15
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATA
Found at i:57103723 original size:40 final size:41
Alignment explanation
Indices: 57103629--57103849 Score: 255
Period size: 40 Copynumber: 5.6 Consensus size: 41
57103619 TATTCGAATG
*
57103629 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTA-GTGACT
* * * *
57103670 ATAACCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
*
57103710 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
*
57103750 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * *
57103790 ATATCCGGGCTAAGA-CCCGAAGGC-CTTGTGCAAGT-AGTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGA-CT
57103829 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
57103850 ATTACTTGAG
Statistics
Matches: 156, Mismatches: 16, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
37 1 0.01
38 14 0.09
39 16 0.10
40 95 0.61
41 29 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:57110405 original size:47 final size:47
Alignment explanation
Indices: 57110342--57110640 Score: 383
Period size: 47 Copynumber: 6.4 Consensus size: 47
57110332 CCCTTCGGGA
* * *
57110342 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
57110389 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
57110436 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * **
57110483 CTTATCAC----AT-CACTTTCACATTCATCACGTTGGTCACTCAAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
**
57110525 CCCATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
57110572 CCTATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
57110621 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
57110641 GTACATCAAT
Statistics
Matches: 224, Mismatches: 21, Indels: 14
0.86 0.08 0.05
Matches are distributed among these distances:
42 33 0.15
43 2 0.01
46 2 0.01
47 141 0.63
49 46 0.21
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
Found at i:57110555 original size:89 final size:90
Alignment explanation
Indices: 57110345--57110640 Score: 319
Period size: 89 Copynumber: 3.2 Consensus size: 90
57110335 TTCGGGACTT
* *
57110345 ATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACTTT
1 ATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC----ATACACTTT
* ** **
57110410 CACATTCATCACATTGGCCATTAGGTCTT
62 CACATTCATCACATTGGCCATCAGACCCC
*
57110439 ATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT-CACTTTCACA
1 ATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACACTTTCACA
* *
57110503 TTCATCACGTTGGTCACTCA-ACCCC
66 TTCATCACATTGGCCA-TCAGACCCC
* * *
57110528 ATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCCTATCACATATATATATACT
1 ATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC------ATACACT
* *
57110593 TTCACATTCATCACATTGGCCACTC-GGCCCT
60 TTCACATTCATCACATTGGCCA-TCAGACCCC
*
57110624 ATCACATATATATACTT
1 ATCACATATATACACTT
57110641 GTACATCAAT
Statistics
Matches: 174, Mismatches: 19, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
89 74 0.43
90 4 0.02
94 49 0.28
95 2 0.01
96 45 0.26
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (90 bp):
ATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACACTTTCACA
TTCATCACATTGGCCATCAGACCCC
Found at i:57110604 original size:49 final size:49
Alignment explanation
Indices: 57110493--57110638 Score: 224
Period size: 49 Copynumber: 3.0 Consensus size: 49
57110483 CTTATCACAT
* * ** *
57110493 CACTTTCACATTCATCACGTTGGTCACTCAACCCCATCAC--ATATATA
1 CACTTTCACATTCATCACATTGGCCACTCGGCCCTATCACATATATATA
57110540 CACTTTCACATTCATCACATTGGCCACTCGGCCCTATCACATATATATA
1 CACTTTCACATTCATCACATTGGCCACTCGGCCCTATCACATATATATA
*
57110589 TACTTTCACATTCATCACATTGGCCACTCGGCCCTATCACATATATATA
1 CACTTTCACATTCATCACATTGGCCACTCGGCCCTATCACATATATATA
57110638 C
1 C
57110639 TTGTACATCA
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
47 35 0.39
49 55 0.61
ACGTcount: A:0.29, C:0.33, G:0.08, T:0.31
Consensus pattern (49 bp):
CACTTTCACATTCATCACATTGGCCACTCGGCCCTATCACATATATATA
Found at i:57123457 original size:27 final size:27
Alignment explanation
Indices: 57123435--57123487 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
57123425 ACCCCTAATT
*
57123435 GATAAAATGACTATTATGCCCCTGTGG
1 GATAAAATGACTATTATGCCCCTATGG
* *
57123462 GATAAAATGACTGTTATGCCCTTATG
1 GATAAAATGACTATTATGCCCCTATG
57123488 AGATGTATGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (27 bp):
GATAAAATGACTATTATGCCCCTATGG
Found at i:57124432 original size:35 final size:35
Alignment explanation
Indices: 57124386--57124457 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
57124376 TAAGAACAAT
* *
57124386 AAATAAAATTCCAAATTTGAAATCCCGAAAATTAC
1 AAATAAAATTCCAAATTTAAAATCCAGAAAATTAC
*
57124421 AAATAAAATTCCAAATTTAAAATCTAGAAAATTAC
1 AAATAAAATTCCAAATTTAAAATCCAGAAAATTAC
57124456 AA
1 AA
57124458 CGGCTTTACT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.56, C:0.14, G:0.04, T:0.26
Consensus pattern (35 bp):
AAATAAAATTCCAAATTTAAAATCCAGAAAATTAC
Found at i:57124778 original size:17 final size:18
Alignment explanation
Indices: 57124756--57124789 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
57124746 GGCGTTAACC
57124756 CATTAT-AGAATAAGAAA
1 CATTATCAGAATAAGAAA
*
57124773 CATTATCAGAATCAGAA
1 CATTATCAGAATAAGAA
57124790 TCAGGTGACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (18 bp):
CATTATCAGAATAAGAAA
Found at i:57124806 original size:25 final size:25
Alignment explanation
Indices: 57124777--57124864 Score: 133
Period size: 25 Copynumber: 3.6 Consensus size: 25
57124767 AAGAAACATT
57124777 ATCAGAATCAGAATCAGGTGACAGA
1 ATCAGAATCAGAATCAGGTGACAGA
*
57124802 ATCAGAATCAGAATTAGGTGACAGA
1 ATCAGAATCAGAATCAGGTGACAGA
* *
57124827 ATCAG-ATCAGTATCAGGTAACAGA
1 ATCAGAATCAGAATCAGGTGACAGA
*
57124851 ATCTGAATCAGAAT
1 ATCAGAATCAGAAT
57124865 GTGAATGCAA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
24 20 0.36
25 36 0.64
ACGTcount: A:0.43, C:0.15, G:0.22, T:0.20
Consensus pattern (25 bp):
ATCAGAATCAGAATCAGGTGACAGA
Found at i:57125131 original size:22 final size:22
Alignment explanation
Indices: 57125099--57125160 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
57125089 CCATAATAAC
*
57125099 GGCACACAGCCATAATCAGGTT
1 GGCACAAAGCCATAATCAGGTT
* *
57125121 GGCACAAAGCCATACGT-ATGTT
1 GGCACAAAGCCATA-ATCAGGTT
*
57125143 GGCGCAAAGCCATAATCA
1 GGCACAAAGCCATAATCA
57125161 AAATAATTGG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
21 1 0.03
22 31 0.94
23 1 0.03
ACGTcount: A:0.34, C:0.26, G:0.23, T:0.18
Consensus pattern (22 bp):
GGCACAAAGCCATAATCAGGTT
Found at i:57125694 original size:27 final size:28
Alignment explanation
Indices: 57125632--57125695 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 28
57125622 CAATCACTTG
*
57125632 CCCACAAGGGCAAAACAGTCATTTAACA
1 CCCACAAGGGCAAAACAGTAATTTAACA
* ** *
57125660 CCC-TAAGGGCAAAATGGTAATTTTAC-
1 CCCACAAGGGCAAAACAGTAATTTAACA
57125686 CCCACAAGGG
1 CCCACAAGGG
57125696 TATCTCGGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
26 3 0.10
27 23 0.79
28 3 0.10
ACGTcount: A:0.38, C:0.27, G:0.19, T:0.17
Consensus pattern (28 bp):
CCCACAAGGGCAAAACAGTAATTTAACA
Found at i:57125705 original size:27 final size:27
Alignment explanation
Indices: 57125675--57125782 Score: 144
Period size: 27 Copynumber: 4.0 Consensus size: 27
57125665 AGGGCAAAAT
* * *
57125675 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
57125702 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
57125729 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
57125756 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
57125783 AATAATTTTG
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:57125733 original size:54 final size:54
Alignment explanation
Indices: 57125675--57125791 Score: 162
Period size: 54 Copynumber: 2.2 Consensus size: 54
57125665 AGGGCAAAAT
** *
57125675 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCCACAAGGGTATCTCAATAATTCTACCCTACAGGGGTATTTC
* * *
57125729 GGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCCACAAGGGTATCTCAATAATTCTACCCTACAGGGGTATTTC
**
57125783 AATAATTTT
1 GGTAATTTT
57125792 GCAAATCGAA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (54 bp):
GGTAATTTTACCCCACAAGGGTATCTCAATAATTCTACCCTACAGGGGTATTTC
Found at i:57125869 original size:54 final size:53
Alignment explanation
Indices: 57125809--57125985 Score: 196
Period size: 54 Copynumber: 3.3 Consensus size: 53
57125799 GAAGGTAAAA
* * * *
57125809 CGGTAATTCTGTAAATCGGGGGTACTTTGGTAATTTAACAAGTCAAGGGTATTT
1 CGGTAATTTTGTAAATAGGGGGTATTTTGGTAATTT-ACAAATCAAGGGTATTT
* * *
57125863 CAGTAATTTTGTAAATTAGGGGG-ATTTTTGTAATTTTCTAAATCAAGGGTATTT
1 CGGTAATTTTGTAAA-TAGGGGGTATTTTGGTAATTTAC-AAATCAAGGGTATTT
** *
57125917 CGGTAATTTTCCAAATTA-GGGGTATTTTGGTAATTTTACAAATCGAGGGTATTT
1 CGGTAATTTTGTAAA-TAGGGGGTATTTTGGTAA-TTTACAAATCAAGGGTATTT
*
57125971 CGGTAATTTGGTAAA
1 CGGTAATTTTGTAAA
57125986 CTAAAGTATT
Statistics
Matches: 103, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
53 5 0.05
54 88 0.85
55 10 0.10
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.40
Consensus pattern (53 bp):
CGGTAATTTTGTAAATAGGGGGTATTTTGGTAATTTACAAATCAAGGGTATTT
Found at i:57125889 original size:27 final size:27
Alignment explanation
Indices: 57125855--57125979 Score: 128
Period size: 27 Copynumber: 4.6 Consensus size: 27
57125845 AACAAGTCAA
* *
57125855 GGGTATTTCAGTAATTTTGTAAATTAG
1 GGGTATTTCGGTAATTTTCTAAATTAG
* ** * *
57125882 GGGGATTTTTGTAATTTTCTAAATCAA
1 GGGTATTTCGGTAATTTTCTAAATTAG
*
57125909 GGGTATTTCGGTAATTTTCCAAATTAG
1 GGGTATTTCGGTAATTTTCTAAATTAG
* *
57125936 GGGTATTTTGGTAATTTTAC-AAA-TCG
1 GGGTATTTCGGTAATTTT-CTAAATTAG
57125962 AGGGTATTTCGGTAATTT
1 -GGGTATTTCGGTAATTT
57125980 GGTAAACTAA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.02
27 78 0.96
28 1 0.01
ACGTcount: A:0.27, C:0.07, G:0.22, T:0.43
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTCTAAATTAG
Found at i:57129340 original size:43 final size:43
Alignment explanation
Indices: 57129311--57129415 Score: 147
Period size: 43 Copynumber: 2.4 Consensus size: 43
57129301 TAGCCCATCT
57129311 ATGGTCTTACACAAAATCAAATAATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACAAAATCAAATAATGATGCCAATGTCCCAGAC
** ** * *
57129354 ATGGTCTTACACGTAATCTCATAATGATGCCAATGTTCTAGAC
1 ATGGTCTTACACAAAATCAAATAATGATGCCAATGTCCCAGAC
*
57129397 ATGGTCTTACACATAATCA
1 ATGGTCTTACACAAAATCA
57129416 CATCTCGTTA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACACAAAATCAAATAATGATGCCAATGTCCCAGAC
Found at i:57130098 original size:16 final size:16
Alignment explanation
Indices: 57130077--57130108 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
57130067 AACAAACTTA
*
57130077 AAAATTATGGCATGGG
1 AAAATTAGGGCATGGG
57130093 AAAATTAGGGCATGGG
1 AAAATTAGGGCATGGG
57130109 CTAGCTAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.06, G:0.34, T:0.22
Consensus pattern (16 bp):
AAAATTAGGGCATGGG
Found at i:57134986 original size:25 final size:25
Alignment explanation
Indices: 57134952--57135001 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
57134942 TTAAAAAAAA
*
57134952 TTCAACTTTTAAATGGTCACGCGGC
1 TTCAACTTTTAAATGGTCACACGGC
57134977 TTCAACTTTTAAATGGTCACACGGC
1 TTCAACTTTTAAATGGTCACACGGC
57135002 CTTAGACACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (25 bp):
TTCAACTTTTAAATGGTCACACGGC
Found at i:57137196 original size:15 final size:15
Alignment explanation
Indices: 57137176--57137205 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
57137166 GAGATTAGGC
57137176 CCTTTTTGCAAATTA
1 CCTTTTTGCAAATTA
57137191 CCTTTTTGCAAATTA
1 CCTTTTTGCAAATTA
57137206 AGCACACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.07, T:0.47
Consensus pattern (15 bp):
CCTTTTTGCAAATTA
Found at i:57140115 original size:28 final size:28
Alignment explanation
Indices: 57140052--57140174 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
57140042 ATATTAAGTC
*
57140052 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
57140079 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
57140107 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
57140135 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
57140164 CGCACACTTAG
1 CGCACACTTAG
57140175 CGCCAATCTC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.25
28 49 0.56
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:57141675 original size:23 final size:23
Alignment explanation
Indices: 57141618--57141675 Score: 55
Period size: 23 Copynumber: 2.5 Consensus size: 23
57141608 GGTAATAACC
*
57141618 CCTTTTTTTTTCTCTTTTATTAT
1 CCTTTCTTTTTCTCTTTTATTAT
** * *
57141641 CCTTAGTATTTCTTTTATTATT-T
1 CCTTTCTTTTTCTCTT-TTATTAT
57141664 CCTTTCTTTTTC
1 CCTTTCTTTTTC
57141676 ATAAAATAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 22 0.81
24 5 0.19
ACGTcount: A:0.10, C:0.19, G:0.02, T:0.69
Consensus pattern (23 bp):
CCTTTCTTTTTCTCTTTTATTAT
Found at i:57149906 original size:22 final size:22
Alignment explanation
Indices: 57149876--57149919 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
57149866 GAAAACAATA
*
57149876 AAAAATAATCAAAATTTATTAT
1 AAAAATAATCAAAATTCATTAT
* *
57149898 AAAATTAATTAAAATTCATTAT
1 AAAAATAATCAAAATTCATTAT
57149920 GTTAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAAATAATCAAAATTCATTAT
Found at i:57152054 original size:38 final size:38
Alignment explanation
Indices: 57152011--57152274 Score: 161
Period size: 38 Copynumber: 6.2 Consensus size: 38
57152001 TTTCAAATTA
57152011 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* *
57152049 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* * *
57152087 A-ATGAATAAATATATGTAACCCTGACATATCCACTTAGCACCACATT
1 ACATG--------TA--TAACCGTGGCATATCCACTTAGCACCACGTT
* * * *
57152134 ACATGTATCAATATGTGTAATCATGGTATATCCACTTAGCACCCCGTT
1 ACATG------TA----TAACCGTGGCATATCCACTTAGCACCACGTT
*
57152182 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
*
57152223 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
57152267 ACATGTAT
1 ACATGTAT
57152275 CAATATGTGT
Statistics
Matches: 182, Mismatches: 22, Indels: 44
0.73 0.09 0.18
Matches are distributed among these distances:
37 3 0.02
38 64 0.35
39 1 0.01
40 4 0.02
41 2 0.01
42 3 0.02
43 1 0.01
44 2 0.01
45 5 0.03
46 6 0.03
47 56 0.31
48 35 0.19
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:57152166 original size:48 final size:48
Alignment explanation
Indices: 57152051--57152322 Score: 325
Period size: 48 Copynumber: 5.9 Consensus size: 48
57152041 ACCACGTTAC
* * *
57152051 ATGTTTAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATAAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * ** *
57152098 ATATGTAACCCTGACATATCCACTTAGCACCACATTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * *
57152146 ATGTGTAATCATGGTATATCCACTTAGCACCCCGTTACATG------T
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
*
57152188 A----TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
57152231 ATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
*
57152279 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
57152323 AACCTTGGTA
Statistics
Matches: 190, Mismatches: 23, Indels: 23
0.81 0.10 0.10
Matches are distributed among these distances:
37 3 0.02
38 29 0.15
42 2 0.01
43 2 0.01
47 62 0.33
48 92 0.48
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (48 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:57152255 original size:85 final size:86
Alignment explanation
Indices: 57152113--57152274 Score: 254
Period size: 85 Copynumber: 1.9 Consensus size: 86
57152103 TAACCCTGAC
* * * * *
57152113 ATATCCACTTAGCACCACATTACATGTATCAATATGTGTAATCATGGTATATCCACTTAGCACCC
1 ATATCCACTTAGCACCACATTACATGAATCAATATATGTAACCATGGCATATCCACTTAGCACCA
57152178 CGTTACATGTATAACCGTGGT
66 CGTTACATGTATAACCGTGGT
* *
57152199 ATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCA
1 ATATCCACTTAGCACCACATTACATGAATCAATATATGTAACCATGGCATATCCACTTAGCACCA
57152263 CGTTACATGTAT
66 CGTTACATGTAT
57152275 CAATATGTGT
Statistics
Matches: 69, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
85 48 0.70
86 21 0.30
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (86 bp):
ATATCCACTTAGCACCACATTACATGAATCAATATATGTAACCATGGCATATCCACTTAGCACCA
CGTTACATGTATAACCGTGGT
Found at i:57152269 original size:133 final size:133
Alignment explanation
Indices: 57152028--57152352 Score: 542
Period size: 133 Copynumber: 2.4 Consensus size: 133
57152018 TAACCGTGGC
*
57152028 ATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATGAA
1 ATATCCACTTAGCACCACGTTACATGTATAACCGTGGTATATCCACTTAGCACCACGTTAATGAA
57152093 TAAATATATGTAACCCTGACATATCCACTTAGCACCACATTACATGTATCAATATGTGTAATCAT
66 TAAATATATGTAACCCTGACATATCCACTTAGCACCACATTACATGTATCAATATGTGTAATCAT
57152158 GGT
131 GGT
*
57152161 ATATCCACTTAGCACCCCGTTACATGTATAACCGTGGTATATCCACTTAGCACCACGTTAATGAA
1 ATATCCACTTAGCACCACGTTACATGTATAACCGTGGTATATCCACTTAGCACCACGTTAATGAA
* * * * *
57152226 TCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGT
66 TAAATATATGTAACCCTGACATATCCACTTAGCACCACATTACATGTATCAATATGTGTAATCAT
57152291 GGT
131 GGT
* * ** *
57152294 ATATCCACTTAGCACCACGTTACATGTATAACCTTGGTACATCTGCTTAGCACAACGTT
1 ATATCCACTTAGCACCACGTTACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
57152353 TTTTCATTCC
Statistics
Matches: 179, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
133 179 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (133 bp):
ATATCCACTTAGCACCACGTTACATGTATAACCGTGGTATATCCACTTAGCACCACGTTAATGAA
TAAATATATGTAACCCTGACATATCCACTTAGCACCACATTACATGTATCAATATGTGTAATCAT
GGT
Found at i:57155868 original size:18 final size:18
Alignment explanation
Indices: 57155845--57155896 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
57155835 GACTTGTATT
*
57155845 CTGTTTACTGATACTGCA
1 CTGTTTACTGTTACTGCA
*
57155863 CTGTTTACTGTTACTACA
1 CTGTTTACTGTTACTGCA
*
57155881 CTTTTTACTGTTACTG
1 CTGTTTACTGTTACTG
57155897 AATTTGGCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.46
Consensus pattern (18 bp):
CTGTTTACTGTTACTGCA
Found at i:57162201 original size:20 final size:21
Alignment explanation
Indices: 57162178--57162218 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
57162168 AATACATGAG
57162178 TATTTTGAA-GTTTGATGATA
1 TATTTTGAATGTTTGATGATA
*
57162198 TATTTTGAATGTTTGGTGATA
1 TATTTTGAATGTTTGATGATA
57162219 GTTATACAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (21 bp):
TATTTTGAATGTTTGATGATA
Found at i:57162884 original size:29 final size:28
Alignment explanation
Indices: 57162837--57162893 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 28
57162827 GTGAGTTACA
57162837 CTGATTTGGCTTCAGGCCATGAATATCAG
1 CTGATTTGGCTTCAGGCCAT-AATATCAG
*
57162866 CTGATTTGGCTTC-GAGCCATCATATCAG
1 CTGATTTGGCTTCAG-GCCATAATATCAG
57162894 TATTTCAGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 8 0.31
29 18 0.69
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGATTTGGCTTCAGGCCATAATATCAG
Found at i:57164379 original size:19 final size:18
Alignment explanation
Indices: 57164314--57164379 Score: 52
Period size: 19 Copynumber: 3.7 Consensus size: 18
57164304 TTATGGACAA
*
57164314 AATGTTTAATTGTGATTG
1 AATGTTTAAATGTGATTG
57164332 AATTGTTTATTAAT-TGATT-
1 AA-TGTTTA--AATGTGATTG
57164351 AAT-TTT--ATGTGAATTG
1 AATGTTTAAATGTG-ATTG
57164367 AATGTTTAAATGT
1 AATGTTTAAATGT
57164380 TTTATAAGTC
Statistics
Matches: 38, Mismatches: 1, Indels: 17
0.68 0.02 0.30
Matches are distributed among these distances:
13 2 0.05
14 2 0.05
15 3 0.08
16 3 0.08
17 6 0.16
18 3 0.08
19 12 0.32
20 5 0.13
21 2 0.05
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.52
Consensus pattern (18 bp):
AATGTTTAAATGTGATTG
Found at i:57165295 original size:16 final size:17
Alignment explanation
Indices: 57165258--57165295 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
57165248 TGTACGAGTT
57165258 TATATGCTGAAATTAAA
1 TATATGCTGAAATTAAA
*
57165275 T-TATG-TGAAATTATA
1 TATATGCTGAAATTAAA
57165290 TATATG
1 TATATG
57165296 AAAGTTGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 10 0.53
16 8 0.42
17 1 0.05
ACGTcount: A:0.42, C:0.03, G:0.13, T:0.42
Consensus pattern (17 bp):
TATATGCTGAAATTAAA
Found at i:57165578 original size:43 final size:41
Alignment explanation
Indices: 57165434--57165590 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 41
57165424 TATGCGTTCT
57165434 CATGTAAGACCACGTCT-GAGAC-GCTGGCATCGATCTATGATTA
1 CATGTAAGACCACGTCTAG-GACAG-TGGCATCGATCTA-GA-TA
* * * * *
57165477 CATGTAAGACCATGTCTGGGACA-TCGGTATCGTAT-TTGATT
1 CATGTAAGACCACGTCTAGGACAGT-GGCATCG-ATCTAGATA
*
57165518 CGTGTAAGACC-CTGTCTAGGACAGTGGCATCGATCTGAGATA
1 CATGTAAGACCAC-GTCTAGGACAGTGGCATCGATCT-AGATA
*
57165560 GCATGTAAGACCACGTCTAGGACATTGGCAT
1 -CATGTAAGACCACGTCTAGGACAGTGGCAT
57165591 TGTTTGATAT
Statistics
Matches: 92, Mismatches: 12, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
40 2 0.02
41 27 0.29
42 7 0.08
43 52 0.57
44 4 0.04
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (41 bp):
CATGTAAGACCACGTCTAGGACAGTGGCATCGATCTAGATA
Found at i:57166702 original size:29 final size:29
Alignment explanation
Indices: 57166670--57166727 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
57166660 TAATGGAGTA
57166670 AATGATGGATGTTATTAAGTTAAAATATG
1 AATGATGGATGTTATTAAGTTAAAATATG
*
57166699 AATGATGGATGTTATTGAGTTAAAATATG
1 AATGATGGATGTTATTAAGTTAAAATATG
57166728 TAAAGTATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.40, C:0.00, G:0.22, T:0.38
Consensus pattern (29 bp):
AATGATGGATGTTATTAAGTTAAAATATG
Found at i:57179276 original size:42 final size:42
Alignment explanation
Indices: 57179229--57179313 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
57179219 TTTTAACAAA
*
57179229 CAAAAATATCCATACTTTTATTTATTATTTTACCATTTTATC
1 CAAAAATATCCATACTTTTACTTATTATTTTACCATTTTATC
57179271 CAAAAATATCCATACTTTTACTTATTATTTTACCATTTTATC
1 CAAAAATATCCATACTTTTACTTATTATTTTACCATTTTATC
57179313 C
1 C
57179314 TTGAAAGTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.48
Consensus pattern (42 bp):
CAAAAATATCCATACTTTTACTTATTATTTTACCATTTTATC
Found at i:57180159 original size:199 final size:196
Alignment explanation
Indices: 57179822--57180187 Score: 678
Period size: 199 Copynumber: 1.9 Consensus size: 196
57179812 TTCATAATGG
57179822 GCATGGCTTTATTTTCATTCTGATATAATATATGGAGAAAGCCTTAGCTTTTTAGCTTTCAAACC
1 GCATGGCTTTATTTTCATTCTGATATAATATATGGAGAAAGCCTTAGCTTTTTAGCTTTCAAACC
57179887 AAACCCTATTTTTTTTGCTTCCCTTCTCTACTTCTTTGTTTGAATTTTTACAAGAAGTTATTATT
66 AAACCCTATTTTTTTTGCTTCCCTTCTCTACTTCTTTGTTTGAATTTTTACAAGAAGTTATTATT
57179952 ATGGTTGTTCAATCACAGCTGTATCCTGAAAACTTGGGTTTACTACCTTGGCCCATGTGTGCCTT
131 ATGGTTGTTCAATCACAGCTGTATCCTGAAAACTTGGGTTTACTACCTTGGCCCATGTGTGCCTT
57180017 T
196 T
57180018 GCATGGCTTTATTTTCATTCTGATATAAATATATGGAGAAAGCCTTAGCTTTTTAGCTTTCAAAC
1 GCATGGCTTTATTTTCATTCTGATAT-AATATATGGAGAAAGCCTTAGCTTTTTAGCTTTCAAAC
* *
57180083 CAAACCCCATTTTTTTTTTGCTTCCCTTCTCTGCTTCTTTGTTTGAATTTTTACAAGAAGTTATT
65 CAAA-CCC-TATTTTTTTTGCTTCCCTTCTCTACTTCTTTGTTTGAATTTTTACAAGAAGTTATT
*
57180148 ATTATGGTTGTTCAATCACAGTTGTATCCTGAAAACTTGG
128 ATTATGGTTGTTCAATCACAGCTGTATCCTGAAAACTTGG
57180188 ATGCCACCAA
Statistics
Matches: 164, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
196 26 0.16
197 42 0.26
198 3 0.02
199 93 0.57
ACGTcount: A:0.24, C:0.19, G:0.14, T:0.43
Consensus pattern (196 bp):
GCATGGCTTTATTTTCATTCTGATATAATATATGGAGAAAGCCTTAGCTTTTTAGCTTTCAAACC
AAACCCTATTTTTTTTGCTTCCCTTCTCTACTTCTTTGTTTGAATTTTTACAAGAAGTTATTATT
ATGGTTGTTCAATCACAGCTGTATCCTGAAAACTTGGGTTTACTACCTTGGCCCATGTGTGCCTT
T
Found at i:57183586 original size:30 final size:30
Alignment explanation
Indices: 57183552--57183612 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
57183542 TTCCTGAGCC
57183552 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * *
57183582 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
57183612 T
1 T
57183613 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.05, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:57189733 original size:58 final size:57
Alignment explanation
Indices: 57189671--57189788 Score: 132
Period size: 57 Copynumber: 2.1 Consensus size: 57
57189661 GCCCAGGTGA
* *
57189671 GTAATCCCAATATAATCCCTCTC-GAGTATATGTTACGAT-TAGGATTTAGCCTGGACTG
1 GTAATCCCAAT-TAA-CCCTCTCTGAGCATATGTTAC-ATAAAGGATTTAGCCTGGACTG
* * * * *
57189729 GTAATCCTAATTGAGCTTTTCTGAGCATATGTTACATAAAGGATTTAGCCTGGACTG
1 GTAATCCCAATTAACCCTCTCTGAGCATATGTTACATAAAGGATTTAGCCTGGACTG
57189786 GTA
1 GTA
57189789 GTCCTATAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
56 6 0.12
57 35 0.69
58 10 0.20
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (57 bp):
GTAATCCCAATTAACCCTCTCTGAGCATATGTTACATAAAGGATTTAGCCTGGACTG
Found at i:57193651 original size:27 final size:28
Alignment explanation
Indices: 57193614--57193753 Score: 175
Period size: 27 Copynumber: 5.2 Consensus size: 28
57193604 AGCATGGCTG
* * *
57193614 CCAGA-ACAGATA-ATGTGACAAAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
57193640 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
57193668 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
57193695 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
57193722 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
57193749 CCAGA
1 CCAGA
57193754 ACGCTTCCTC
Statistics
Matches: 105, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
26 5 0.05
27 84 0.80
28 16 0.15
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:57195409 original size:26 final size:26
Alignment explanation
Indices: 57195373--57195482 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
57195363 CATGAAATTC
57195373 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
57195399 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
57195425 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
57195451 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
57195477 TTATCA
1 TTATCA
57195483 ATTTGTACCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:57199107 original size:27 final size:26
Alignment explanation
Indices: 57199070--57199210 Score: 156
Period size: 27 Copynumber: 5.3 Consensus size: 26
57199060 AGCATGGCTG
* * *
57199070 CCAGAACAGATAATGTGACAAAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
57199096 CCAGATACAGATAATCTGGCAGAGCCA
1 CCAGA-ACAGATAATGTGGCAGAGCCA
57199123 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
** *
57199150 CCAGATTAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
57199177 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
57199204 CCAGAAC
1 CCAGAAC
57199211 GCTTCCTCCA
Statistics
Matches: 102, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
26 12 0.12
27 90 0.88
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:57199170 original size:54 final size:54
Alignment explanation
Indices: 57199070--57199208 Score: 174
Period size: 54 Copynumber: 2.6 Consensus size: 54
57199060 AGCATGGCTG
* *
57199070 CCAGAACAGATA-ATGTGACAAAGTCACCAGATACAGATAATCTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAAAGCCACCAGATACAGATAATCTGGCAGAGCCA
* * * *
57199123 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-TAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAAAGCCACCAGATACAGATA-ATCTGGCAGAGCCA
* * *
57199177 CCAGATCAGATATTTGTGGCATAGCCACCAGA
1 CCAGAACAGATATATGTGGCAAAGCCACCAGA
57199209 ACGCTTCCTC
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
53 17 0.23
54 58 0.77
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAAAGCCACCAGATACAGATAATCTGGCAGAGCCA
Found at i:57199340 original size:26 final size:27
Alignment explanation
Indices: 57199311--57199386 Score: 82
Period size: 26 Copynumber: 2.8 Consensus size: 27
57199301 CAAAATTAAC
* *
57199311 CCTAGGGGTATAATGGTAATTTTGC-A
1 CCTAGGGGTATAATAGTAATTTTCCAA
* *
57199337 CCTAAGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATAATAGTAATTTTCCA-A
* *
57199365 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATAATAGTAATTT
57199387 AGCTACTTTT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 21 0.52
28 19 0.47
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.36
Consensus pattern (27 bp):
CCTAGGGGTATAATAGTAATTTTCCAA
Found at i:57200863 original size:26 final size:26
Alignment explanation
Indices: 57200827--57200936 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
57200817 CATGAAATTC
57200827 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
57200853 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
57200879 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
57200905 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
57200931 TTATCA
1 TTATCA
57200937 ATTTGTACCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:57203243 original size:19 final size:19
Alignment explanation
Indices: 57203221--57203258 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
57203211 TGGTTAGTTC
57203221 CTAACCAGCTTAATTTGTA
1 CTAACCAGCTTAATTTGTA
57203240 CTAACCAGCTTAATTTGTA
1 CTAACCAGCTTAATTTGTA
57203259 ACCTAAGTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.37
Consensus pattern (19 bp):
CTAACCAGCTTAATTTGTA
Found at i:57204128 original size:42 final size:42
Alignment explanation
Indices: 57204062--57204172 Score: 125
Period size: 42 Copynumber: 2.6 Consensus size: 42
57204052 CCAGTTAGAT
* * * * * *
57204062 ATGATTCACTGAGGTTCCAAATATATTTCTTTGAACTTT-TGG
1 ATGATGCACTGAAGTGCCAGATATATTTCTTTAAAATTTCT-G
*
57204104 ATGATGCACTGAAGTGTCAGATATATTTCTTTAAAATTTCTG
1 ATGATGCACTGAAGTGCCAGATATATTTCTTTAAAATTTCTG
* *
57204146 ATGATGCATTGAGGTGCCAGATATATT
1 ATGATGCACTGAAGTGCCAGATATATT
57204173 ACTTCAGACT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 57 0.98
43 1 0.02
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.40
Consensus pattern (42 bp):
ATGATGCACTGAAGTGCCAGATATATTTCTTTAAAATTTCTG
Found at i:57205328 original size:74 final size:75
Alignment explanation
Indices: 57205207--57205355 Score: 210
Period size: 74 Copynumber: 2.0 Consensus size: 75
57205197 AAGAAAAATC
* * *
57205207 ATGATTATTCCATTATTAGTAGAAAAGGCAAATAAAAAGTTAGAAAAATGAAGTATGTT-TTTCC
1 ATGATTATTCCATTATTAATAGAAAAGACAAATAAAAAGTTAGAAAAATGAAGTATATTCTTTCC
57205271 AAAAGAATAT
66 AAAAGAATAT
* * ** * *
57205281 ATGATTATTCCCTTATTAATAGAGAAGACAAATGGAAAGTTAGAAAAATGAATTATATTCTTTCG
1 ATGATTATTCCATTATTAATAGAAAAGACAAATAAAAAGTTAGAAAAATGAAGTATATTCTTTCC
57205346 AAAAGAATAT
66 AAAAGAATAT
57205356 TAATTTTCAT
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
74 51 0.78
75 14 0.22
ACGTcount: A:0.46, C:0.07, G:0.15, T:0.32
Consensus pattern (75 bp):
ATGATTATTCCATTATTAATAGAAAAGACAAATAAAAAGTTAGAAAAATGAAGTATATTCTTTCC
AAAAGAATAT
Found at i:57205830 original size:281 final size:276
Alignment explanation
Indices: 57205331--57205891 Score: 813
Period size: 281 Copynumber: 2.0 Consensus size: 276
57205321 TAGAAAAATG
* * *
57205331 AATTATATTCTTTCGAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGAACGAAATTAATGAA
* * *
57205396 TATAATTGTCTATATTAATAAATTCAATAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAACTGTCTATATTAATAAATTCAATAAAATATATAAAATTAATATTTTATATGAATCAAATT
* * ** *
57205461 CATATATTAATTATATTATTTCCAAAATAATATTAATTTTTATCTCTTTTATATTTTGACCGAAA
131 CAAATATTAATTATATTATTTCCAAAAGAATATTAATTTCCATCTCTTTTATATTTTGACCAAAA
*
57205526 TCTATTAATATAACTGTTTATATTAATACATTTAGTAAAAATATATACAATTAATATTTTGTATG
196 TCTATTAATATAACTGTTTATATTAATAAATTTAGT-AAAATATATACAATTAATATTTTGTATG
* *
57205591 AATCAAGTTAATATTTT
260 AATCAAATTAATATATT
57205608 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTC-TTT-TATTTTGAACGAAATTAATGAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGAACGAAATTAATGAA
* ***
57205671 TATAACTGTTTATATTAATAAATTTGGTAAAATATATAAAATTAATATTTGTATTTTATATGAAT
66 TATAACTGTCTATATTAATAAATTCAATAAAATATATAAAATT-A-A----TATTTTATATGAAT
* * * *
57205736 CAAATTCAAATATTAATTATATTCTTTCCAAAAGATTATTAATTTCCATGTCTTTTATATTTTGG
125 CAAATTCAAATATTAATTATATTATTTCCAAAAGAATATTAATTTCCATCTCTTTTATATTTTGA
*
57205801 CCAAAAT-TAATTAATATAACTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTT
190 CCAAAATCT-ATTAATATAACTGTTTATATTAATAAATTTAGTAAAATATATACAATTAATATTT
*
57205865 TGTATGAATCAAATTCATATATT
254 TGTATGAATCAAATTAATATATT
57205888 AATT
1 AATT
57205892 TTATCTACGT
Statistics
Matches: 253, Mismatches: 24, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
275 57 0.23
276 4 0.02
277 38 0.15
280 47 0.19
281 107 0.42
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (276 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGAACGAAATTAATGAA
TATAACTGTCTATATTAATAAATTCAATAAAATATATAAAATTAATATTTTATATGAATCAAATT
CAAATATTAATTATATTATTTCCAAAAGAATATTAATTTCCATCTCTTTTATATTTTGACCAAAA
TCTATTAATATAACTGTTTATATTAATAAATTTAGTAAAATATATACAATTAATATTTTGTATGA
ATCAAATTAATATATT
Found at i:57217903 original size:138 final size:137
Alignment explanation
Indices: 57217655--57218346 Score: 1003
Period size: 138 Copynumber: 5.0 Consensus size: 137
57217645 TAGAAAAATA
* * * *
57217655 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTATTTTATATTTTGACTGAAATTAATTAA
1 AATTATATTCTTTCCAAAATAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * ** *
57217720 TATAGCTATTTATATTAATAAATTTATTAAAATATATACAATTAATATTTTGTATGAATCATATT
66 TATAACTGTTTATATTAATAAA-TTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
57217785 CATATATT
130 CATATATT
** * * *
57217793 AATTATATAATTTCCAAAATAATATTAATTTCTATGTCTTTTATATTTTGATCGAAACCT-ATTA
1 AATTATATTCTTTCCAAAATAATATTAATTTCCATGTCTTTTATATTTTGACCGAAA-TTAATTA
* *
57217857 ATATAACTATTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATCAAAT
65 ATATAACTGTTTATATTAATAAATT-GGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
* *
57217922 TAATATTTT
129 TCATATATT
** * *
57217931 AATTATATTCTTT-TGAAATAATATTAATTTCCATGTCTTTTATATTTTGAACGAAATTAATGAA
1 AATTATATTCTTTCCAAAATAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
57217995 TATAACTGTTTATATTAATAAAATTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAAT-AAATTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
* *
57218060 AAGATATT
130 CATATATT
* * * * *
57218068 AATTTTATTCTTTCCAAAAGATTATTAATTTCCAAGGC-TTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAATAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
*
57218132 TATAACTGTTTATATTAATAAATTTGGTAAAATATATGCAATTAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAA-TTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
57218197 CATATATT
130 CATATATT
* *
57218205 AATTATATTCTTTCCAAAATAATATTAATTTCCATATGTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAATAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* *
57218270 TATAACTGTTTTTATTAATAAATTCGGTAAAATATATACAATTAATATATTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAATT-GGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
57218335 CATATATT
130 CATATATT
57218343 AATT
1 AATT
57218347 GTAACGACCC
Statistics
Matches: 497, Mismatches: 49, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
136 4 0.01
137 243 0.49
138 249 0.50
139 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.46
Consensus pattern (137 bp):
AATTATATTCTTTCCAAAATAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAACTGTTTATATTAATAAATTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTC
ATATATT
Found at i:57218026 original size:137 final size:138
Alignment explanation
Indices: 57217655--57218346 Score: 982
Period size: 137 Copynumber: 5.0 Consensus size: 138
57217645 TAGAAAAATA
* * *
57217655 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTATTTTATATTTTG-ACTGAAATTAATTA
1 AATTATATTCTTTCCAAAATAATATTAATTTCCATGTCTTTTATATTTTGAAC-GAAATTAATTA
* * * ** *
57217719 ATATAGCTATTTATATTAATAAATTTATTAAAATATATACAATTAATATTTTGTATGAATCATAT
65 ATATAACTGTTTATATTAATAAAATTGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
57217784 TCATATATT
130 TCATATATT
** * * *
57217793 AATTATATAATTTCCAAAATAATATTAATTTCTATGTCTTTTATATTTTGATCGAAACCT-ATTA
1 AATTATATTCTTTCCAAAATAATATTAATTTCCATGTCTTTTATATTTTGAACGAAA-TTAATTA
* *
57217857 ATATAACTATTTATATTAAT-AAATTCGATAAAATATATACAATTAATATTTTGTATGAATCAAA
65 ATATAACTGTTTATATTAATAAAATT-GGTAAAATATATACAATTAATATTTTGTATGAATCAAA
* *
57217921 TTAATATTTT
129 TTCATATATT
** *
57217931 AATTATATTCTTT-TGAAATAATATTAATTTCCATGTCTTTTATATTTTGAACGAAATTAATGAA
1 AATTATATTCTTTCCAAAATAATATTAATTTCCATGTCTTTTATATTTTGAACGAAATTAATTAA
57217995 TATAACTGTTTATATTAATAAAATTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAAATTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
* *
57218060 AAGATATT
131 CATATATT
* * * * * *
57218068 AATTTTATTCTTTCCAAAAGATTATTAATTTCCAAGGC-TTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAATAATATTAATTTCCATGTCTTTTATATTTTGAACGAAATTAATTAA
* *
57218132 TATAACTGTTTATATTAATAAATTTGGTAAAATATATGCAATTAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAAATTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
57218197 CATATATT
131 CATATATT
* * *
57218205 AATTATATTCTTTCCAAAATAATATTAATTTCCATATGTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAATAATATTAATTTCCATGTCTTTTATATTTTGAACGAAATTAATTAA
* *
57218270 TATAACTGTTTTTATTAAT-AAATTCGGTAAAATATATACAATTAATATATTGTATGAATCAAAT
66 TATAACTGTTTATATTAATAAAATT-GGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
57218334 TCATATATT
130 TCATATATT
57218343 AATT
1 AATT
57218347 GTAACGACCC
Statistics
Matches: 495, Mismatches: 51, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
136 1 0.00
137 250 0.51
138 242 0.49
139 2 0.00
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.46
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAATAATATTAATTTCCATGTCTTTTATATTTTGAACGAAATTAATTAA
TATAACTGTTTATATTAATAAAATTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:57218227 original size:275 final size:276
Alignment explanation
Indices: 57217655--57218346 Score: 1007
Period size: 275 Copynumber: 2.5 Consensus size: 276
57217645 TAGAAAAATA
* *
57217655 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTATTTTATATTTTG-ACTGAAATTAATTA
1 AATTATATTCTTTCCAAAATAATATTAATTTCCATGTATTTTATATTTTGAAC-GAAATTAATTA
* * * ** *
57217719 ATATAGCTATTTATATTAATAAATTTATTAAAATATATACAATTAATATTTTGTATGAATCATAT
65 ATATAACTGTTTATATTAATAAAATTGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
* * * * *
57217784 TCATATATTAATTATATAATTTCCAAAATAATATTAATTTCTATGTCTTTTATATTTTGATCGAA
130 TCATATATTAATTATATAATTTCCAAAAGAATATTAATTTCCAAGGCTTTTATATTTTGACCGAA
57217849 ACCTATTAATATAACTATTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATG
195 ACCTATTAATATAACTATTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATG
*
57217914 AATCAAATTAATATTTT
260 AATCAAATTAATATATT
** * *
57217931 AATTATATTCTTT-TGAAATAATATTAATTTCCATGTCTTTTATATTTTGAACGAAATTAATGAA
1 AATTATATTCTTTCCAAAATAATATTAATTTCCATGTATTTTATATTTTGAACGAAATTAATTAA
57217995 TATAACTGTTTATATTAATAAAATTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAAATTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
* * * ** *
57218060 AAGATATTAATTTTATTCTTTCCAAAAGATTATTAATTTCCAAGGC-TTTATATTTTGACCGAAA
131 CATATATTAATTATATAATTTCCAAAAGAATATTAATTTCCAAGGCTTTTATATTTTGACCGAAA
* * * * *
57218124 -TTAATTAATATAACTGTTTATATTAATAAATTTGGTAAAATATATGCAATTAATATTTTGTATG
196 CCT-ATTAATATAACTATTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATG
*
57218188 AATCAAATTCATATATT
260 AATCAAATTAATATATT
* * *
57218205 AATTATATTCTTTCCAAAATAATATTAATTTCCATATGTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAATAATATTAATTTCCATGTATTTTATATTTTGAACGAAATTAATTAA
* *
57218270 TATAACTGTTTTTATTAAT-AAATTCGGTAAAATATATACAATTAATATATTGTATGAATCAAAT
66 TATAACTGTTTATATTAATAAAATT-GGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
57218334 TCATATATTAATT
130 TCATATATTAATT
57218347 GTAACGACCC
Statistics
Matches: 372, Mismatches: 40, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
273 1 0.00
274 107 0.29
275 249 0.67
276 15 0.04
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.46
Consensus pattern (276 bp):
AATTATATTCTTTCCAAAATAATATTAATTTCCATGTATTTTATATTTTGAACGAAATTAATTAA
TATAACTGTTTATATTAATAAAATTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATTAATTATATAATTTCCAAAAGAATATTAATTTCCAAGGCTTTTATATTTTGACCGAAA
CCTATTAATATAACTATTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGA
ATCAAATTAATATATT
Found at i:57218638 original size:19 final size:22
Alignment explanation
Indices: 57218596--57218643 Score: 66
Period size: 19 Copynumber: 2.3 Consensus size: 22
57218586 GATGATTACA
57218596 TATATATATATATGTTAACTTAT
1 TATATATATATATGTTAAC-TAT
57218619 TATATAT-TATATGTT-A-TAT
1 TATATATATATATGTTAACTAT
57218638 TATATA
1 TATATA
57218644 ATAATAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.36
21 1 0.04
22 8 0.32
23 7 0.28
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (22 bp):
TATATATATATATGTTAACTAT
Found at i:57223226 original size:52 final size:52
Alignment explanation
Indices: 57223148--57223252 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
57223138 AAAATTTTTG
*
57223148 AGTTATGTTGATTTGACGTATAGTATTCACCTATGTGGTACACCATTGACGT
1 AGTTATGTTGATTTGACATATAGTATTCACCTATGTGGTACACCATTGACGT
57223200 AGTTATGTTGATTTGACATATAGTATTCACCTATGTGGTACACCATTGACGT
1 AGTTATGTTGATTTGACATATAGTATTCACCTATGTGGTACACCATTGACGT
57223252 A
1 A
57223253 CTAAGTCTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (52 bp):
AGTTATGTTGATTTGACATATAGTATTCACCTATGTGGTACACCATTGACGT
Found at i:57228040 original size:80 final size:79
Alignment explanation
Indices: 57227956--57228127 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 79
57227946 GGACTAAGAT
* *
57227956 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCAAAGG-CATTGTGCGAGATACT
* *
57228020 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
57228036 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCAAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCAAAGGCATTGTGCGAGATACTAA
*
57228101 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
57228115 CCGAAGGCATTTG
1 CCGAAGGCATTTG
57228128 AACGAGGAGC
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 38 0.49
80 37 0.47
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCAAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:57228107 original size:39 final size:39
Alignment explanation
Indices: 57227956--57228125 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 39
57227946 GGACTAAGAT
* * *
57227956 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGTTACTAAA-TCCGGGTTATGTC
* * *
57227996 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
*
57228036 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * * *
57228076 CCAAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
57228115 CCGAAGGCATT
1 CCGAAGGCATT
57228126 TGAACGAGGA
Statistics
Matches: 115, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 37 0.32
40 74 0.64
41 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:57231620 original size:9 final size:9
Alignment explanation
Indices: 57231608--57231632 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
57231598 CTCTTTTTGG
57231608 CCACCACAA
1 CCACCACAA
57231617 CCACCACAA
1 CCACCACAA
57231626 CCACCAC
1 CCACCAC
57231633 CCTCTTCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.40, C:0.60, G:0.00, T:0.00
Consensus pattern (9 bp):
CCACCACAA
Found at i:57235483 original size:48 final size:48
Alignment explanation
Indices: 57235412--57235826 Score: 392
Period size: 48 Copynumber: 8.6 Consensus size: 48
57235402 TGTGCTAGCA
57235412 TAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAGTG
***** * * * *
57235460 TAAGACCATGTCTGGGACATGGCATCGGTGTTGA-TATGTGTGCTATTG
1 TAAGACCATGTCTGGGACATGGCATC-GACCACATTATGAGAGCCAGTG
* *
57235508 TAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAGTG
*** * * *
57235556 TAAGACCATGTCTGGGACATGGCATCGACGTTGA-TATGTGTGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGAC-CACATTATGAGAGCCAGTG
* *
57235604 TAAGACCATGTCTGGGACATGGCCTCGGCCACATTATGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAGTG
* * * * *
57235652 TAAGACCATGTCTGGGATATGGCATCGGCCTCAATATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAGTG
* * * * * **
57235700 TAAGACCATGTTTGGAACATGGCATC-A--ACATTGTTTTATGTGTTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACCACA-T-TATGA-GAGCCAGTG
* * * *
57235748 TAAGACCATGTCTAGGACATGTCATCAGCACC-GATGTATGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATC-G-ACCACAT-TATGAGAGCCAGTG
*
57235798 TAAGACCATGTCCGGGACATGGCATCGAC
1 TAAGACCATGTCTGGGACATGGCATCGAC
57235827 ATTTTACCCT
Statistics
Matches: 291, Mismatches: 64, Indels: 24
0.77 0.17 0.06
Matches are distributed among these distances:
45 2 0.01
47 5 0.02
48 243 0.84
49 4 0.01
50 30 0.10
51 6 0.02
52 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAGTG
Found at i:57235557 original size:96 final size:96
Alignment explanation
Indices: 57235393--57235725 Score: 522
Period size: 96 Copynumber: 3.5 Consensus size: 96
57235383 AAGACATTTG
** *
57235393 GTTGATATGTGTGCTAGCATAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAG
*
57235458 TGTAAGACCATGTCTGGGACATGGCATCGGT
66 TGTAAGACCATGTCTGGGACATGGCATCGGC
* *
57235489 GTTGATATGTGTGCTATTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAG
*
57235554 TGTAAGACCATGTCTGGGACATGGCATCGAC
66 TGTAAGACCATGTCTGGGACATGGCATCGGC
*
57235585 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCCTCGGCCACATTATGAGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAG
*
57235650 TGTAAGACCATGTCTGGGATATGGCATCGGC
66 TGTAAGACCATGTCTGGGACATGGCATCGGC
* ** * * * *
57235681 CTCAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATC
57235726 AACATTGTTT
Statistics
Matches: 217, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 217 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (96 bp):
GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAG
TGTAAGACCATGTCTGGGACATGGCATCGGC
Found at i:57235674 original size:144 final size:142
Alignment explanation
Indices: 57235412--57235824 Score: 468
Period size: 144 Copynumber: 2.9 Consensus size: 142
57235402 TGTGCTAGCA
*** * * *
57235412 TAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCGACTTGA-TATGTGTGCTAGTGTAAGACCATGTCTGGGA
*** * * * *
57235477 CATGGCATCGG-TGTTGATATGTGTGCTATTGTAAGACCATGTTTGGGACATGGCATCGGCCACA
65 CATGGCATCGGCACAT--TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACA
*
57235541 TTATGAGAGCCAGTG
128 ATATGAGAGCCAGTG
57235556 TAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCGAC-TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
* * * *
57235621 CATGGCCTCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCCTCAA
65 CATGGCATCGG-CACATTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAA
*
57235686 TATGTGAGCCAGTG
129 TATGAGAGCCAGTG
* * * * * * * *
57235700 TAAGACCATGTTTGGAACATGGCATCAACATTGTTTTATGTGTTAGTGTAAGACCATGTCTAGGA
1 TAAGACCATGTCTGGGACATGGCATCGAC-TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGA
* * *
57235765 CATGTCATCAGCACCGATGTATGAGAGCTAGTGTAAGACCATGTCCGGGACATGGCATCG
65 CATGGCATCGGCA-C-AT-TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
57235825 ACATTTTACC
Statistics
Matches: 229, Mismatches: 34, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
143 2 0.01
144 185 0.81
145 3 0.01
146 39 0.17
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (142 bp):
TAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGAC
ATGGCATCGGCACATTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATA
TGAGAGCCAGTG
Found at i:57235748 original size:96 final size:94
Alignment explanation
Indices: 57235397--57235822 Score: 442
Period size: 96 Copynumber: 4.4 Consensus size: 94
57235387 CATTTGGTTG
* **
57235397 ATATGTGTGCTAGCATAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAGTGTA
1 ATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT-G-CCACATTATGAGAGCCAGTGTA
** **
57235462 AGACCATGTCTGGGACATGGCATCGGTGTTG
64 AGACCATGTCTGGGACATGGCATCGGCCTCA
* * *
57235493 ATATGTGTGCTATTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTA
1 ATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT--GCCACATTATGAGAGCCAGTGTA
* * **
57235558 AGACCATGTCTGGGACATGGCATCGACGTTG
64 AGACCATGTCTGGGACATGGCATCGGCCTCA
* *
57235589 ATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCCTCGGCCACATTATGAGAGCCAGTGTA
1 ATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT--GCCACATTATGAGAGCCAGTGTA
*
57235654 AGACCATGTCTGGGATATGGCATCGGCCTCA
64 AGACCATGTCTGGGACATGGCATCGGCCTCA
* * * * * * * **
57235685 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT-CAACATTGTTTTATGTGTTAGTGT
1 ATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATGCCACA-T-TATGA-GAGCCAGTGT
* * *
57235749 AAGACCATGTCTAGGACATGTCATCAGCAC-CGA
63 AAGACCATGTCTGGGACATGGCATCGGC-CTC-A
* * *
57235782 TGTATGAGAGCTAGTGTAAGACCATGTCCGGGACATGGCAT
1 -ATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
57235823 CGACATTTTA
Statistics
Matches: 287, Mismatches: 36, Indels: 12
0.86 0.11 0.04
Matches are distributed among these distances:
93 4 0.01
94 1 0.00
95 3 0.01
96 242 0.84
97 3 0.01
98 34 0.12
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (94 bp):
ATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATGCCACATTATGAGAGCCAGTGTAAG
ACCATGTCTGGGACATGGCATCGGCCTCA
Found at i:57235818 original size:98 final size:96
Alignment explanation
Indices: 57235648--57235829 Score: 231
Period size: 98 Copynumber: 1.9 Consensus size: 96
57235638 TATGAGAGCC
* * * * **
57235648 AGTGTAAGACCATGTCTGGGATATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTAGGACATGGCATCAGCCTCAATATGAGAGCCAGTGTAAGACCATGTCC
57235713 GGAACATGGCATCAACATTGTTTTATGTGTT
66 GGAACATGGCATCAACATTGTTTTATGTGTT
* * *
57235744 AGTGTAAGACCATGTCTAGGACATGTCATCAGCAC-CGATGTATGAGAGCTAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTAGGACATGGCATCAGC-CTC-A-ATATGAGAGCCAGTGTAAGACCATG
* *
57235808 TCCGGGACATGGCATCGACATT
63 TCCGGAACATGGCATCAACATT
57235830 TTACCCTTTT
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
96 30 0.42
97 2 0.03
98 40 0.56
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCAGCCTCAATATGAGAGCCAGTGTAAGACCATGTCC
GGAACATGGCATCAACATTGTTTTATGTGTT
Found at i:57238163 original size:18 final size:18
Alignment explanation
Indices: 57238142--57238177 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
57238132 ATCTTAGGTT
57238142 TATTTGCACTTTTAGCCC
1 TATTTGCACTTTTAGCCC
57238160 TATTTGCACTTTTAGCCC
1 TATTTGCACTTTTAGCCC
57238178 ATCTCTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.28, G:0.11, T:0.44
Consensus pattern (18 bp):
TATTTGCACTTTTAGCCC
Found at i:57240824 original size:33 final size:32
Alignment explanation
Indices: 57240775--57240838 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
57240765 CTCGCTGCAA
* *
57240775 TCTGGTGGCTTCGCCACACATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
57240808 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
57240839 GTGACTTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:57240852 original size:27 final size:26
Alignment explanation
Indices: 57240800--57240859 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
57240790 ACACATATAT
*
57240800 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
57240826 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
57240853 ATATCTG
1 ATATCTG
57240860 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:57255101 original size:21 final size:21
Alignment explanation
Indices: 57255077--57255144 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 21
57255067 AGCACGAGCA
*
57255077 TGTCCCAGGGTCACACGGGCG
1 TGTCCCAGGGCCACACGGGCG
*
57255098 TGTCCCTTA-GGCCACACGGGTG
1 TGTCCC--AGGGCCACACGGGCG
**
57255120 TGTCCTTTGGGCCACACGGGCG
1 TGTCC-CAGGGCCACACGGGCG
57255142 TGT
1 TGT
57255145 GACCCTGTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
21 6 0.16
22 31 0.82
23 1 0.03
ACGTcount: A:0.12, C:0.31, G:0.35, T:0.22
Consensus pattern (21 bp):
TGTCCCAGGGCCACACGGGCG
Found at i:57255115 original size:22 final size:22
Alignment explanation
Indices: 57255088--57255144 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 22
57255078 GTCCCAGGGT
57255088 CACACGGGCGTGTCCCTTAGGC
1 CACACGGGCGTGTCCCTTAGGC
* * *
57255110 CACACGGGTGTGTCCTTTGGGC
1 CACACGGGCGTGTCCCTTAGGC
57255132 CACACGGGCGTGT
1 CACACGGGCGTGT
57255145 GACCCTGTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.12, C:0.32, G:0.35, T:0.21
Consensus pattern (22 bp):
CACACGGGCGTGTCCCTTAGGC
Found at i:57259253 original size:27 final size:27
Alignment explanation
Indices: 57259223--57259400 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
57259213 ATATTGAGTC
* * * *
57259223 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
57259250 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
57259277 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
57259305 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
57259332 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
57259359 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
57259386 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57259401 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:57259362 original size:82 final size:81
Alignment explanation
Indices: 57259244--57259399 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
57259234 TGCTATATAA
* *
57259244 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
57259309 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
57259326 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
57259390 CACTTAGTGC
65 CACTTAGTGC
57259400 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:57273157 original size:25 final size:25
Alignment explanation
Indices: 57273075--57273167 Score: 114
Period size: 25 Copynumber: 3.7 Consensus size: 25
57273065 TCATGTACAT
* *
57273075 GTATGCTAATACGAGCTGCAAATCG
1 GTATGCTCACACGAGCTGCAAATCG
* * *
57273100 GTATGCTCACTCGAGCTGTAGATCG
1 GTATGCTCACACGAGCTGCAAATCG
* *
57273125 GTATGCTCTCACGAGCTACAAATCG
1 GTATGCTCACACGAGCTGCAAATCG
*
57273150 GTATGCTCACACAAGCTG
1 GTATGCTCACACGAGCTG
57273168 TGGGTTGGAA
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 55 1.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGCAAATCG
Found at i:57274113 original size:14 final size:15
Alignment explanation
Indices: 57274094--57274122 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
57274084 TGAAAGCTTA
57274094 ATTTTGTT-TTATTT
1 ATTTTGTTATTATTT
57274108 ATTTTGTTATTATTT
1 ATTTTGTTATTATTT
57274123 GCTAAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.76
Consensus pattern (15 bp):
ATTTTGTTATTATTT
Found at i:57275273 original size:52 final size:52
Alignment explanation
Indices: 57275217--57275320 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
57275207 TTTGCATGTT
*
57275217 CTTAAAGATCTATCATTAGAGAATAAATCAAACCATTTTCATTCTCAAAATA
1 CTTAAAGATCTATCATCAGAGAATAAATCAAACCATTTTCATTCTCAAAATA
57275269 CTTAAAGATCTATCATCAGAGAATAAATCAAACCATTTTCATTCTCAAAATA
1 CTTAAAGATCTATCATCAGAGAATAAATCAAACCATTTTCATTCTCAAAATA
57275321 TTCTCTCAAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.32
Consensus pattern (52 bp):
CTTAAAGATCTATCATCAGAGAATAAATCAAACCATTTTCATTCTCAAAATA
Found at i:57275310 original size:26 final size:26
Alignment explanation
Indices: 57275229--57275310 Score: 60
Period size: 26 Copynumber: 3.2 Consensus size: 26
57275219 TAAAGATCTA
*
57275229 TCATTAGAGAATAAATCAAACCATTT
1 TCATCAGAGAATAAATCAAACCATTT
** * * * * *
57275255 TCATTCTCAAAAT-ACTTAAA-GATCTA
1 TCA-TCAGAGAATAAATCAAACCAT-TT
57275281 TCATCAGAGAATAAATCAAACCATTT
1 TCATCAGAGAATAAATCAAACCATTT
57275307 TCAT
1 TCAT
57275311 TCTCAAAATA
Statistics
Matches: 37, Mismatches: 15, Indels: 8
0.62 0.25 0.13
Matches are distributed among these distances:
25 8 0.22
26 22 0.59
27 7 0.19
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.32
Consensus pattern (26 bp):
TCATCAGAGAATAAATCAAACCATTT
Found at i:57281629 original size:27 final size:26
Alignment explanation
Indices: 57281596--57281983 Score: 481
Period size: 27 Copynumber: 14.4 Consensus size: 26
57281586 AGTCATTATA
*
57281596 GTCATTTTATCCTACAGGGCCATTACG
1 GTCATTTTACCCTACAGGG-CATTACG
*
57281623 GTTATTTTACCCTACAAGGGCATTACG
1 GTCATTTTACCCTAC-AGGGCATTACG
* *
57281650 GTCATTTTACCCTATAGGGGCATTATG
1 GTCATTTTACCCTACA-GGGCATTACG
57281677 GT-ATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACA-GGGCATTACG
*
57281703 GTCATTTTACCCTATAGGGTCATTACG
1 GTCATTTTACCCTACAGGG-CATTACG
*
57281730 GTCATTTTACCCTATAGGGTCATTACG
1 GTCATTTTACCCTACAGGG-CATTACG
*
57281757 GTCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACA-GGGCATTACG
*
57281784 ATCATTTTACCCTACAAGGGCATTACG
1 GTCATTTTACCCTAC-AGGGCATTACG
* *
57281811 ATCATTTTACCCTACAAGGGCATTACA
1 GTCATTTTACCCTAC-AGGGCATTACG
* * *
57281838 ATCATTTTACCCAATAGGAGCATTACG
1 GTCATTTTACCCTACAGG-GCATTACG
* *
57281865 GTCATTTTACACTACATGGGTATTACG
1 GTCATTTTACCCTACA-GGGCATTACG
*
57281892 GTCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACA-GGGCATTACG
57281919 GTCATTTTACCCTACAGGGTCATTACG
1 GTCATTTTACCCTACAGGG-CATTACG
*
57281946 GTCATTTTACCCTACAGGGTTATTACG
1 GTCATTTTACCCTACAGGG-CATTACG
*
57281973 ATCATTTTACC
1 GTCATTTTACC
57281984 TATTTTGGGG
Statistics
Matches: 326, Mismatches: 26, Indels: 18
0.88 0.07 0.05
Matches are distributed among these distances:
26 34 0.10
27 282 0.87
28 10 0.03
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (26 bp):
GTCATTTTACCCTACAGGGCATTACG
Found at i:57282252 original size:19 final size:19
Alignment explanation
Indices: 57282217--57282254 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
57282207 GTGTGGAGCC
*
57282217 CACGAGCCCATTGGGCCCA
1 CACGAGCCCATCGGGCCCA
57282236 CACG-GCCCATCGAGGCCCA
1 CACGAGCCCATCG-GGCCCA
57282255 AAACAACCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.21, C:0.45, G:0.26, T:0.08
Consensus pattern (19 bp):
CACGAGCCCATCGGGCCCA
Done.