Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 180 of 344
Found at i:60231017 original size:49 final size:47
Alignment explanation
Indices: 60230957--60231458 Score: 756
Period size: 47 Copynumber: 10.6 Consensus size: 47
60230947 GATAATTGTG
* *
60230957 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
60231004 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
60231051 ATATGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
60231098 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
60231147 ATATGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGA
60231194 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGA
60231243 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
60231292 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
60231339 ATGTGGAAA-TGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGT-GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
60231386 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
60231433 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
60231459 TCCCGAAGGG
Statistics
Matches: 419, Mismatches: 28, Indels: 16
0.90 0.06 0.03
Matches are distributed among these distances:
46 6 0.01
47 271 0.65
48 4 0.01
49 136 0.32
50 2 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:60231144 original size:96 final size:94
Alignment explanation
Indices: 60230957--60231458 Score: 756
Period size: 96 Copynumber: 5.3 Consensus size: 94
60230947 GATAATTGTG
* *
60230957 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
60231022 GTGATAAGGCCTAATAGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
* * *
60231051 ATATGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAC
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT--
60231116 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
60231147 ATATGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 ATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATAT-
60231211 CATGTGATAAGGCCTAATGGCCGATGTGATGA
64 -ATGTGATAAGGCCTAATGGCCGATGTGATGA
60231243 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
60231308 ATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
60231339 ATGTGGAAA-TGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 ATGT-GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * *
60231403 TGTGACAGGGCCGAGTGGCCAACGTGATGG
65 TGTGATAAGGCCTAATGGCCGATGTGATGA
*
60231433 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
60231459 TCCCGAAGGG
Statistics
Matches: 379, Mismatches: 21, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
93 4 0.01
94 146 0.39
95 1 0.00
96 179 0.47
97 4 0.01
98 43 0.11
99 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:60233278 original size:43 final size:42
Alignment explanation
Indices: 60233218--60233331 Score: 110
Period size: 41 Copynumber: 2.7 Consensus size: 42
60233208 ATATCAAACA
* * * *
60233218 ATGCCAAC-GTCCCAGACATGGTCTTACATTCTATCTCATAT-CG
1 ATGCCAACTGTCCTAGACATGGTCTTACA--CGA-ATCAAATGCG
*
60233261 ATGCC-ACTGTCCTAGACAGGGTCTTACACGAATCAAATGCG
1 ATGCCAACTGTCCTAGACATGGTCTTACACGAATCAAATGCG
* *
60233302 AAGCCGA-TGTCCTAGACATGGTCTTACACG
1 ATGCCAACTGTCCTAGACATGGTCTTACACG
60233332 TAACCATATA
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
40 5 0.08
41 30 0.49
42 3 0.05
43 23 0.38
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAACTGTCCTAGACATGGTCTTACACGAATCAAATGCG
Found at i:60236021 original size:12 final size:12
Alignment explanation
Indices: 60236004--60236029 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
60235994 CATTCCGAAG
60236004 TATATATATACA
1 TATATATATACA
60236016 TATATATATACA
1 TATATATATACA
60236028 TA
1 TA
60236030 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:60236541 original size:27 final size:27
Alignment explanation
Indices: 60236510--60236687 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60236500 TAAATTGTAC
60236510 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60236537 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60236563 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60236591 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60236619 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60236646 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60236673 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60236688 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60236624 original size:82 final size:81
Alignment explanation
Indices: 60236511--60236666 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60236501 AAATTGTACA
* *
60236511 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
60236575 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60236592 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60236657 TGCGAGTTGA
65 TGCGAATTGA
60236667 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60236678 original size:82 final size:81
Alignment explanation
Indices: 60236507--60236687 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
60236497 GATTAAATTG
* *
60236507 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60236572 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60236588 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60236652 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60236670 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60236688 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60248239 original size:85 final size:84
Alignment explanation
Indices: 60248120--60248327 Score: 299
Period size: 85 Copynumber: 2.4 Consensus size: 84
60248110 GAATTATAGT
* * *
60248120 TTACATGTAAGACCACATCTGGGACGTTGACATTGTACTTGATTTCGTGTAAGACCCTGTCTAGG
1 TTACATGTAAGACCACGTCT-GGACGTTGGCATTGTACTTGATTTCGTGTAAAACCCTGTCTAGG
60248185 ACACTGGCATCAATATTTGA
65 ACACTGGCATCAATATTTGA
* ** *
60248205 TTACATGTAAGAACACGTCTAGGACGTTGGCATTGTACTTGATTTCGTGTAAAACTGTGTCTGGG
1 TTACATGTAAGACCACGTCT-GGACGTTGGCATTGTACTTGATTTCGTGTAAAACCCTGTCTAGG
* * *
60248270 ATAGTGGCATCGATATTTGA
65 ACACTGGCATCAATATTTGA
60248290 TTACATGTAAGACCACGTCTGGCACGTTGGCATTGTAC
1 TTACATGTAAGACCACGTCTGG-ACGTTGGCATTGTAC
60248328 AAGCTTTCTG
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
84 2 0.02
85 108 0.98
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (84 bp):
TTACATGTAAGACCACGTCTGGACGTTGGCATTGTACTTGATTTCGTGTAAAACCCTGTCTAGGA
CACTGGCATCAATATTTGA
Found at i:60248310 original size:43 final size:43
Alignment explanation
Indices: 60248081--60248322 Score: 197
Period size: 43 Copynumber: 5.7 Consensus size: 43
60248071 TGTATTTTCG
* *
60248081 TGTAAGACCACATCTGGGACGTTGGCATCGA-ATTATAGTTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT-T-GATTACA
* * * * * *
60248125 TGTAAGACCACATCTGGGACGTTGACATTG-TACTTGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
* ** *
60248167 TGTAAGACC-CTGTCTAGGACACTGGCATCAATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACGTTGGCATCGATATTTGATTACA
* * * * * *
60248210 TGTAAGAACACGTCTAGGACGTTGGCATTG-TACTTGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
* *** *
60248252 TGTAAAACTGTGTCTGGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCACGTCTGGGA-CGTTGGCATCGATATTTGATTACA
*
60248295 TGTAAGACCACGTCTGGCACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
60248323 TGTACAAGCT
Statistics
Matches: 150, Mismatches: 41, Indels: 15
0.73 0.20 0.07
Matches are distributed among these distances:
41 1 0.01
42 55 0.37
43 63 0.42
44 31 0.21
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:60249163 original size:12 final size:12
Alignment explanation
Indices: 60249146--60249171 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
60249136 GGTGGCAAGT
60249146 TGGCCTTGTAAA
1 TGGCCTTGTAAA
60249158 TGGCCTTGTAAA
1 TGGCCTTGTAAA
60249170 TG
1 TG
60249172 ACATGGGCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (12 bp):
TGGCCTTGTAAA
Found at i:60253723 original size:47 final size:46
Alignment explanation
Indices: 60253655--60253829 Score: 178
Period size: 47 Copynumber: 3.7 Consensus size: 46
60253645 ACAACTCTTA
* * *
60253655 GCCGATGCGTGTCCCGGACATGTCTTACATTGGCTA-TCATCGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTACTCATC-TCG-G
* * *
60253702 GCCGGTGCATGTCCCAGACATGTCTTACACTGG-TACTCGTCTCTGT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTACTCATCTC-GG
* * *
60253748 GCCGATGCCATGTCCCAAACATGGTCTTATACTGGC-ACTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTACTCAT-CTCG-G
60253796 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
60253830 ACACAAGAAA
Statistics
Matches: 107, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
46 22 0.21
47 61 0.57
48 23 0.21
49 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.24, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTACTCATCTCGG
Found at i:60262952 original size:13 final size:13
Alignment explanation
Indices: 60262936--60262960 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60262926 GGCCTACACA
60262936 CATGCCCGTGTGC
1 CATGCCCGTGTGC
60262949 CATGCCCGTGTG
1 CATGCCCGTGTG
60262961 GAAAAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.36, G:0.32, T:0.24
Consensus pattern (13 bp):
CATGCCCGTGTGC
Found at i:60263727 original size:44 final size:46
Alignment explanation
Indices: 60263670--60263791 Score: 151
Period size: 44 Copynumber: 2.7 Consensus size: 46
60263660 GTATATACGT
*
60263670 GCTGATGCATGTCCCAGACATGTCTTACACTAG-TA-CAAC-TCTTA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTATCAACGTC-GA
* * *
60263714 GCTGATGCGTGTCCCAGACACGTCTTACACTAGCTATCATCGTCGA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTATCAACGTCGA
* *
60263760 GGTCGATGCATGTCCCCGACATGTCTTACACT
1 GCT-GATGCATGTCCCAGACATGTCTTACACT
60263792 GGCACTTGTC
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
44 31 0.47
45 2 0.03
46 6 0.09
47 27 0.41
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTATCAACGTCGA
Found at i:60271591 original size:40 final size:40
Alignment explanation
Indices: 60271536--60271710 Score: 296
Period size: 40 Copynumber: 4.4 Consensus size: 40
60271526 TGTGTGCATA
*
60271536 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAC
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
60271576 GCATTTGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
60271616 GCATTCGTGCGGGTTATTATAATCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
60271656 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
60271696 GCATTTGTGCTGGTT
1 GCATTCGTGCGGGTT
60271711 GTTACATCCG
Statistics
Matches: 126, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 126 1.00
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:60279790 original size:40 final size:40
Alignment explanation
Indices: 60279684--60279819 Score: 227
Period size: 40 Copynumber: 3.4 Consensus size: 40
60279674 TATGTGCATA
*
60279684 GCATTCGTACGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
60279724 GCATTCGTGCGGGGTTTTTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGC-GGGTTATTATAACCGGGTTAAGTCCCGAAG
*
60279765 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
60279805 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
60279820 GTTACATCCG
Statistics
Matches: 90, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 51 0.57
41 39 0.43
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:60287856 original size:41 final size:40
Alignment explanation
Indices: 60287792--60287887 Score: 165
Period size: 41 Copynumber: 2.4 Consensus size: 40
60287782 TATGTGCATA
60287792 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
60287832 GCATTCGTGCGGGGTTTTTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGC-GGGTTATTATAACCGGGTTAAGTCCCGAAG
*
60287873 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
60287888 GTTACATCCG
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
40 14 0.26
41 39 0.74
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:60294266 original size:90 final size:90
Alignment explanation
Indices: 60294106--60294276 Score: 236
Period size: 90 Copynumber: 1.9 Consensus size: 90
60294096 ACACCAAGTA
*
60294106 TGGTGCCAAAGCCATGTCCCAGACATGGTCTTACATGGAACCACACATCGATGCCATATCCCAAA
1 TGGTGCCAAAGCCATGTCCCAGACATGGTCTTACACGGAACCACACATCGATGCCATATCCCAAA
*
60294171 TATGGTCTTATACGAAGTCTCAAAT
66 CATGGTCTTATACGAAGTCTCAAAT
* * * * * * * *
60294196 TGGTGCCGACGCCATGTCCCAGACATGTTCTTATACCGG-ACCTCATATCGATGCCATGTCCCAG
1 TGGTGCCAAAGCCATGTCCCAGACATGGTCTTACA-CGGAACCACACATCGATGCCATATCCCAA
60294260 ACATGGTCTTATACGAA
65 ACATGGTCTTATACGAA
60294277 ATCACTTGCC
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
90 68 0.97
91 2 0.03
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (90 bp):
TGGTGCCAAAGCCATGTCCCAGACATGGTCTTACACGGAACCACACATCGATGCCATATCCCAAA
CATGGTCTTATACGAAGTCTCAAAT
Found at i:60294290 original size:42 final size:44
Alignment explanation
Indices: 60294199--60294291 Score: 106
Period size: 42 Copynumber: 2.2 Consensus size: 44
60294189 CTCAAATTGG
* * **
60294199 TGCCGACGCCATGTCCCAGACATGTTCTTATACCGGACCTCATA
1 TGCCGATGCCATGTCCCAGACATGGTCTTATACCGGAAATCATA
60294243 T--CGATGCCATGTCCCAGACATGGTCTTATA-C-GAAATCACT-
1 TGCCGATGCCATGTCCCAGACATGGTCTTATACCGGAAATCA-TA
60294283 TGCCGATGC
1 TGCCGATGC
60294292 TGAAGCCATA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
40 6 0.14
41 2 0.05
42 33 0.79
44 1 0.02
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (44 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTATACCGGAAATCATA
Found at i:60294862 original size:16 final size:16
Alignment explanation
Indices: 60294841--60294873 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
60294831 TTTTTATCAC
60294841 TCAATTTAGACCTTTT
1 TCAATTTAGACCTTTT
*
60294857 TCAATTTAGTCCTTTT
1 TCAATTTAGACCTTTT
60294873 T
1 T
60294874 AGGTGTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.18, G:0.06, T:0.55
Consensus pattern (16 bp):
TCAATTTAGACCTTTT
Found at i:60301691 original size:46 final size:46
Alignment explanation
Indices: 60301624--60301796 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
60301614 AACCCGCCCC
* * *
60301624 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
* *
60301670 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GAC--GTTCGCATCCA
* * *
60301718 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
*
60301763 TAAGTGAACTCGGACTCAACTCGACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
60301797 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 58 0.55
47 27 0.25
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
Found at i:60301737 original size:93 final size:93
Alignment explanation
Indices: 60301629--60301799 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
60301619 GCCCCTAAGT
* *
60301629 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60301694 CGAGTTCAGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* * *
60301722 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCGA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
60301787 CGAGTTCGGATGC
66 CGAGTTCAGATGC
60301800 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:60302246 original size:30 final size:30
Alignment explanation
Indices: 60302212--60302271 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
60302202 ATTTAATACG
60302212 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* *
60302242 AACTTTTGCAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
60302272 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.35
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:60316792 original size:53 final size:54
Alignment explanation
Indices: 60316709--60316931 Score: 204
Period size: 53 Copynumber: 4.2 Consensus size: 54
60316699 AGGATGCACG
** * *
60316709 GGTA-CCTTTCCTT-TTTAACTTACCATTGCCACGTCTTGACATGGTCTTACGT
1 GGTATCCTTTCCTTATAGAACTTACCATTGCCATGTCTTGACATGGTCTTACAT
* * *
60316761 GGTATCCTTTCCTTAT-GAACTCACCATTGCCATGCCTTGGCATGGTCTTACAT
1 GGTATCCTTTCCTTATAGAACTTACCATTGCCATGTCTTGACATGGTCTTACAT
* ** * *
60316814 GGGAT-CTTTGCCTTATAGTAGTTTATCATTGCCATGTCTTGACATGGCCTTACAT
1 GGTATCCTTT-CCTTATAG-AACTTACCATTGCCATGTCTTGACATGGTCTTACAT
* * * * * * * *
60316869 GATTTCCTTGCCTTGTCGAACTTACCAATGCCATG-CGTTGGCATGGTCTTACTT
1 GGTATCCTTTCCTTATAGAACTTACCATTGCCATGTC-TTGACATGGTCTTACAT
60316923 GGTATCCTT
1 GGTATCCTT
60316932 AAACCCTAAT
Statistics
Matches: 135, Mismatches: 29, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
52 8 0.06
53 51 0.38
54 36 0.27
55 37 0.27
56 3 0.02
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.39
Consensus pattern (54 bp):
GGTATCCTTTCCTTATAGAACTTACCATTGCCATGTCTTGACATGGTCTTACAT
Found at i:60319893 original size:18 final size:18
Alignment explanation
Indices: 60319851--60319893 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
60319841 GCCCATTCCG
* *
60319851 AAGTATATATATATACAT
1 AAGTATGTATATATACAC
60319869 ATA-TATGTATATATACAC
1 A-AGTATGTATATATACAC
60319887 AAGTATG
1 AAGTATG
60319894 CCCATTCGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (18 bp):
AAGTATGTATATATACAC
Found at i:60320401 original size:27 final size:27
Alignment explanation
Indices: 60320370--60320546 Score: 203
Period size: 27 Copynumber: 6.5 Consensus size: 27
60320360 TAAATTGTAC
60320370 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60320397 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60320423 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60320451 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60320479 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60320506 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60320533 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
60320547 AGACTCAATA
Statistics
Matches: 128, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60320484 original size:82 final size:81
Alignment explanation
Indices: 60320371--60320526 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60320361 AAATTGTACA
* *
60320371 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
60320435 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60320452 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60320517 TGCGAGTTGA
65 TGCGAATTGA
60320527 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60320538 original size:82 final size:81
Alignment explanation
Indices: 60320367--60320546 Score: 227
Period size: 82 Copynumber: 2.2 Consensus size: 81
60320357 GATTAAATTG
* *
60320367 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60320432 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60320448 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60320512 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60320530 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
60320547 AGACTCAATA
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60327924 original size:18 final size:18
Alignment explanation
Indices: 60327883--60327918 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
60327873 CATTCCGAAG
* *
60327883 TATATATATATATACATA
1 TATATGTATATATACACA
60327901 TATATGTATATATACACA
1 TATATGTATATATACACA
60327919 AGTATGCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (18 bp):
TATATGTATATATACACA
Found at i:60328462 original size:53 final size:55
Alignment explanation
Indices: 60328402--60328527 Score: 168
Period size: 53 Copynumber: 2.3 Consensus size: 55
60328392 TAAATTGTAC
* *
60328402 AGCACTAAGTGTGCGATTTGACTATG-TGCACTAAGTGTGCGA-AATGAATATG-
1 AGCACTAAGTGTGCGATTTGACCATGCGGCACTAAGTGTGCGAGAATGAATATGT
* ** *
60328454 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGCGATTTGACCATGCGGCACTAAGTGTGCGAGAATGAATATGT
60328510 AGCACTAAGTGTGCGATT
1 AGCACTAAGTGTGCGATT
60328528 GATTCGTAGC
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
52 1 0.02
53 23 0.37
54 15 0.24
55 23 0.37
56 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACCATGCGGCACTAAGTGTGCGAGAATGAATATGT
Found at i:60328466 original size:27 final size:26
Alignment explanation
Indices: 60328403--60328554 Score: 159
Period size: 27 Copynumber: 5.8 Consensus size: 26
60328393 AAATTGTACA
*
60328403 GCACTAAGTGTGCGATTTGACTATGT
1 GCACTAAGTGTGCGAATTGACTATGT
* *
60328429 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATG-T
* *
60328456 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATG-T
*
60328483 GCACTAAGTGTGCGAGTTTGACTATGT
1 GCACTAAGTGTGCGA-ATTGACTATGT
60328510 AGCACTAAGTGTGCG-ATTGA-T-TCGT
1 -GCACTAAGTGTGCGAATTGACTAT-GT
*
60328535 AGCACT-AGTGTGCGAGTTGA
1 -GCACTAAGTGTGCGAATTGA
60328555 TTATATAGCA
Statistics
Matches: 108, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
24 9 0.08
25 13 0.12
26 26 0.24
27 38 0.35
28 22 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGAATTGACTATGT
Found at i:60328572 original size:26 final size:26
Alignment explanation
Indices: 60328402--60328574 Score: 122
Period size: 26 Copynumber: 6.5 Consensus size: 26
60328392 TAAATTGTAC
* *
60328402 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACT-AGTGTGCGAGTTGATTATGT
** *
60328429 -GCACTAAGTGTGCGAAATGAATATG-
1 AGCACT-AGTGTGCGAGTTGATTATGT
* ** *
60328454 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACT-AGTGTGCGAGTTGATTATGT
* *
60328482 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACT-AGTGTGCGAG-TTGATTATGT
*
60328510 AGCACTAAGTGTGCGA-TTGATT-CGT
1 AGCACT-AGTGTGCGAGTTGATTATGT
*
60328535 AGCACTAGTGTGCGAGTTGATTATAT
1 AGCACTAGTGTGCGAGTTGATTATGT
60328561 AGCACT-GATGTGCG
1 AGCACTAG-TGTGCG
60328575 GACTCAATAT
Statistics
Matches: 124, Mismatches: 15, Indels: 15
0.81 0.10 0.10
Matches are distributed among these distances:
24 9 0.07
25 15 0.12
26 40 0.32
27 37 0.30
28 23 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAGTGTGCGAGTTGATTATGT
Found at i:60344754 original size:16 final size:18
Alignment explanation
Indices: 60344728--60344760 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
60344718 AAAGTTGAGT
60344728 TCTACATGTTA-GAGATG
1 TCTACATGTTATGAGATG
60344745 TCTA-ATGTTATGAGAT
1 TCTACATGTTATGAGAT
60344761 TTTAAATTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (18 bp):
TCTACATGTTATGAGATG
Found at i:60345404 original size:30 final size:30
Alignment explanation
Indices: 60345346--60345404 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
60345336 TTTACAAGCC
* * *
60345346 TAGGGGTCAAAGTACAAATATGTGAAAGTT
1 TAGGGGTCAAAATACAAATATATAAAAGTT
*
60345376 TAGGGGTCAAAATACAAATTTATAAAAGT
1 TAGGGGTCAAAATACAAATATATAAAAGT
60345405 ATGATTTGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.27
Consensus pattern (30 bp):
TAGGGGTCAAAATACAAATATATAAAAGTT
Found at i:60346098 original size:50 final size:50
Alignment explanation
Indices: 60346035--60346521 Score: 427
Period size: 50 Copynumber: 9.7 Consensus size: 50
60346025 AAGACAACTT
* *
60346035 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGT
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
* * * * * * ** * *
60346085 TAGGTCGCATGTGTAGTACTAAATGCCGGCTACTATGCGTACCCGATAGTT
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTG-A
* * * * * * * *
60346136 TCGATCACGTGTGTAGTGCTAAGTGCAAGCTACTACGTGTATCAGATGGT
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
*
60346186 TAGGTCACGTGTGCAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
* * * * ** *
60346236 TAGGTCACATGTGTAGTATTAAGTGCAGGCTACTATGCGTACC-CGTTAA
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
* ** * * * *
60346285 CTTCGACCACGTGTGTAGTACTAAGTGCAGGCTATTATGTGTATCAAATGGA
1 --TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
* * * * * *
60346337 TAAGTCACGTGTGTAGTACGAATTGTAGGCTACTACATCTACCAAATTGA
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
** * * * * *
60346387 TAGGTTGCATGTGTAGTACTAAGTGCAGGCTATTATGTGTATCAAATGGA
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
* * * * * *
60346437 TAAGTCACGTGTGTAGTACGAATTGTAGGCTACTACATCTACCAAATTGA
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
** *
60346487 TAGGTTGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
60346522 TGCGTGTGAC
Statistics
Matches: 337, Mismatches: 96, Indels: 8
0.76 0.22 0.02
Matches are distributed among these distances:
49 3 0.01
50 260 0.77
51 72 0.21
52 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (50 bp):
TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
Found at i:60346217 original size:101 final size:101
Alignment explanation
Indices: 60346039--60346220 Score: 283
Period size: 101 Copynumber: 1.8 Consensus size: 101
60346029 CAACTTTAGG
* * * *
60346039 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATGGTTAGGTCACATGTGCAGTAC
*
60346104 TAAATGCCGGCTACTATGCGTACCCGATAGTTTCGA
66 TAAATGCAGGCTACTATGCGTACCCGATAGTTTCGA
* * *
60346140 TCACGTGTGTAGTGCTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGCAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATGGTTAGGTCACATGTGCAGTAC
*
60346205 TAAGTGCAGGCTACTA
66 TAAATGCAGGCTACTA
60346221 CGTGTACCAA
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATGGTTAGGTCACATGTGCAGTAC
TAAATGCAGGCTACTATGCGTACCCGATAGTTTCGA
Found at i:60346309 original size:151 final size:151
Alignment explanation
Indices: 60346034--60346423 Score: 555
Period size: 151 Copynumber: 2.6 Consensus size: 151
60346024 TAAGACAACT
* *
60346034 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGT
* * ** * *
60346099 AGTACTAAATGCCGGCTACTATGCGTACCCGATAGTTTCGATCACGTGTGTAGTGCTAAGTGCAA
66 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGACCACGTGTGTAGTACTAAGTGCAA
*
60346164 GCTACTACGTGTATCAGATGG
131 GCTACTACGTGTATCAAATGG
* *
60346185 TTAGGTCACGTGTGCAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCACATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGT
* * *
60346250 AGTATTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGACCACGTGTGTAGTACTAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGACCACGTGTGTAGTACTAAGTGCAA
* *
60346315 GCTATTATGTGTATCAAATGG
131 GCTACTACGTGTATCAAATGG
* * * * * * * *
60346336 ATAAGTCACGTGTGTAGTACGAATTGTAGGCTACTACATCTACCAAATTGATAGGTTGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGT
*
60346401 AGTACTAAGTGCAGGCTATTATG
66 AGTACTAAGTGCAGGCTACTATG
60346424 TGTATCAAAT
Statistics
Matches: 211, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
151 211 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (151 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGT
AGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGACCACGTGTGTAGTACTAAGTGCAA
GCTACTACGTGTATCAAATGG
Found at i:60349105 original size:49 final size:47
Alignment explanation
Indices: 60349045--60349354 Score: 512
Period size: 47 Copynumber: 6.5 Consensus size: 47
60349035 GATAATTGTG
* * * *
60349045 ATGTGAATGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
60349092 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
60349139 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
60349188 ATGTGAAAGTGTATATATGTGGTAAGGCCGAATGGCCCATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
60349235 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
60349284 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
60349331 ATGTGAAAGTGTATATATGTGATA
1 ATGTGAAAGTGTATATATGTGATA
60349355 TGTATATATG
Statistics
Matches: 248, Mismatches: 11, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
47 157 0.63
49 91 0.37
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:60349112 original size:96 final size:96
Alignment explanation
Indices: 60349045--60349512 Score: 577
Period size: 96 Copynumber: 4.8 Consensus size: 96
60349035 GATAATTGTG
* *
60349045 ATGTG-AA-TGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
60349108 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCGTAATGGCCAATGTGATGA
60349139 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
60349204 ATGTGGTAAGGCCG-AATGGCCCATGTGATGA
66 ATGTGATAAGG-CGTAATGGCCAATGTGATGA
60349235 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
60349300 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCGTAATGGCCAATGTGATGA
*
60349331 ATGTGAAAGTGTATATATGTGATATGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
1 A--T----GTG-A-A-A-GTG-TA--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* * *
60349396 TGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
53 TGAAAGTGTATATATGTGATAAGGCGTAATGGCCAATGTGATGA
* * * * * * * * *
60349440 ATGTGAAAGTG--TATATATGTCACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
60349503 ATGTGATAAG
66 ATGTGATAAG
60349513 TCCCGAAGGG
Statistics
Matches: 334, Mismatches: 23, Indels: 34
0.85 0.06 0.09
Matches are distributed among these distances:
94 56 0.17
95 3 0.01
96 171 0.51
97 1 0.00
98 1 0.00
99 3 0.01
100 1 0.00
101 1 0.00
102 4 0.01
103 4 0.01
104 1 0.00
105 1 0.00
106 3 0.01
107 3 0.01
109 81 0.24
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCGTAATGGCCAATGTGATGA
Found at i:60349360 original size:15 final size:15
Alignment explanation
Indices: 60349340--60349369 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
60349330 AATGTGAAAG
60349340 TGTATATATGTGATA
1 TGTATATATGTGATA
60349355 TGTATATATGTGATA
1 TGTATATATGTGATA
60349370 AGGCCTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (15 bp):
TGTATATATGTGATA
Found at i:60349361 original size:62 final size:63
Alignment explanation
Indices: 60349284--60349415 Score: 248
Period size: 62 Copynumber: 2.1 Consensus size: 63
60349274 GATGTGATGA
*
60349284 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
60349347 ATGTGATA-TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
60349409 ATGTGAT
1 ATGTGAT
60349416 GAGGCCTAAT
Statistics
Matches: 68, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 61 0.90
63 7 0.10
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (63 bp):
ATGTGATAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:60349373 original size:109 final size:109
Alignment explanation
Indices: 60349248--60349459 Score: 397
Period size: 109 Copynumber: 1.9 Consensus size: 109
60349238 TGAAAGTGTA
*
60349248 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
60349313 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATATG
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATATG
*
60349357 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCC
1 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
60349422 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
60349460 CACAGGGCCG
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
109 100 1.00
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.32
Consensus pattern (109 bp):
TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATATG
Found at i:60349397 original size:31 final size:31
Alignment explanation
Indices: 60349300--60349398 Score: 100
Period size: 31 Copynumber: 3.2 Consensus size: 31
60349290 AAGTGTATAT
60349300 ATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGATAAGGCCTAATAGCCGATGTGATGA
* *
60349331 ATGTGA-AAGTG--TATATATG-TGATATGTAT-A
1 ATGTGATAAG-GCCTA-ATA-GCCGATGTG-ATGA
60349361 TATGTGATAAGGCCTAATAGCCGATGTGATGA
1 -ATGTGATAAGGCCTAATAGCCGATGTGATGA
60349393 ATGTGA
1 ATGTGA
60349399 AAGTGTATAT
Statistics
Matches: 54, Mismatches: 4, Indels: 20
0.69 0.05 0.26
Matches are distributed among these distances:
29 2 0.04
30 12 0.22
31 26 0.48
32 12 0.22
33 2 0.04
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31
Consensus pattern (31 bp):
ATGTGATAAGGCCTAATAGCCGATGTGATGA
Found at i:60349415 original size:47 final size:47
Alignment explanation
Indices: 60349347--60349512 Score: 217
Period size: 47 Copynumber: 3.6 Consensus size: 47
60349337 AAGTGTATAT
* *
60349347 ATGTGATA-TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
60349393 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
60349440 ATGTGAAAGTGTATATATGTCACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
60349487 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
60349513 TCCCGAAGGG
Statistics
Matches: 103, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
46 7 0.07
47 96 0.93
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:60349484 original size:156 final size:158
Alignment explanation
Indices: 60349187--60349510 Score: 481
Period size: 156 Copynumber: 2.1 Consensus size: 158
60349177 CGATGTGATG
* * *
60349187 AATGTGAAAGTGTATATATGTGGTAAGGCCGAATGGCCCATGTGATGAATGTGAAAGTGTATATA
1 AATGTGATAGTGTATATATGTGATAAGGCCGAATAGCCCATGTGATGAATGTGAAAGTG-ATATA
* * *
60349252 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
65 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTCACAAGGCCGAAT
* *
60349317 AGCCGATGTGATGAATGTGAAAGTGTATA
130 AGCCAACGTGATGAATGTGAAAGTGTATA
* * *
60349346 TATGTGATA-TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATAT
1 AATGTGATAGTGTATATATGTGATAAGGCCGAATAGCCCATGTGATGAATGTGAAAGTGATATAT
* * * *
60349409 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTCACAGGGCCGAGTG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTCACAAGGCCGAATA
*
60349474 GCCAACGTGATGGATGTGAAAGTGTATA
131 GCCAACGTGATGAATGTGAAAGTGTATA
60349502 AATGTGATA
1 AATGTGATA
60349511 AGTCCCGAAG
Statistics
Matches: 148, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
156 96 0.65
158 45 0.30
159 7 0.05
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (158 bp):
AATGTGATAGTGTATATATGTGATAAGGCCGAATAGCCCATGTGATGAATGTGAAAGTGATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTCACAAGGCCGAATA
GCCAACGTGATGAATGTGAAAGTGTATA
Found at i:60351300 original size:16 final size:16
Alignment explanation
Indices: 60351279--60351310 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
60351269 AGAGTAGAGT
60351279 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
60351295 AAGTGAAATTCTGTAA
1 AAGTGAAATTATGTAA
60351311 TAAAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.19, T:0.31
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:60354333 original size:19 final size:20
Alignment explanation
Indices: 60354288--60354331 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
60354278 AGTCGTGATT
60354288 GAGGGAAAAACAAAGTTTAC
1 GAGGGAAAAACAAAGTTTAC
60354308 GAGGGAAAAACAAAGTTTAC
1 GAGGGAAAAACAAAGTTTAC
60354328 GAGG
1 GAGG
60354332 AATAGGCTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.48, C:0.09, G:0.30, T:0.14
Consensus pattern (20 bp):
GAGGGAAAAACAAAGTTTAC
Found at i:60355304 original size:36 final size:36
Alignment explanation
Indices: 60355255--60355326 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
60355245 GTGGCATGTA
60355255 TAGCTATTAGAATGGCTAATCAGGTTTATAAATGAT
1 TAGCTATTAGAATGGCTAATCAGGTTTATAAATGAT
* * *
60355291 TAGCTATTGGAATGGCTAATTAGGTTTATATATGAT
1 TAGCTATTAGAATGGCTAATCAGGTTTATAAATGAT
60355327 AACATGTATG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.07, G:0.21, T:0.39
Consensus pattern (36 bp):
TAGCTATTAGAATGGCTAATCAGGTTTATAAATGAT
Found at i:60369246 original size:34 final size:33
Alignment explanation
Indices: 60369198--60369261 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
60369188 GCATATCTGT
*
60369198 ACTGTACTGTTACTGAAATGGGCTT-AGGCCGAC
1 ACTGTACTGATACTGAAATGGG-TTAAGGCCGAC
*
60369231 ACTGATACTGATACTGTAATGGGTTAAGGCC
1 ACTG-TACTGATACTGAAATGGGTTAAGGCC
60369262 CTGACTGAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
33 6 0.22
34 21 0.78
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (33 bp):
ACTGTACTGATACTGAAATGGGTTAAGGCCGAC
Found at i:60371991 original size:27 final size:26
Alignment explanation
Indices: 60371931--60372038 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
60371921 TGGCTGCCAT
* *
60371931 AACAGATAATGTGACAGAGTCACCAG
1 AACAGATAATGTGGCAGAGCCACCAG
*
60371957 ATATAGATAATCGTGGCAGAGCCACCAG
1 A-ACAGATAAT-GTGGCAGAGCCACCAG
60371985 AACAGATATATGTGGCAGAGCCACCAG
1 AACAGATA-ATGTGGCAGAGCCACCAG
* * *
60372012 ATCAGATAATTTTGGCATAGCCACCAG
1 AACAGATAA-TGTGGCAGAGCCACCAG
60372039 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 2 0.03
27 52 0.73
28 17 0.24
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
AACAGATAATGTGGCAGAGCCACCAG
Found at i:60372028 original size:54 final size:54
Alignment explanation
Indices: 60371931--60372038 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
60371921 TGGCTGCCAT
* *
60371931 AACAGATAATGTGACAGAGTCACCAGATATAGATAATCGTGGCAGAGCCACCAG
1 AACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAG
* ** *
60371985 AACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTTTGGCATAGCCACCAG
1 AACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAG
60372039 GACGCTTCCT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 29 0.62
55 18 0.38
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (54 bp):
AACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAG
Found at i:60379142 original size:27 final size:26
Alignment explanation
Indices: 60379098--60379149 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60379088 CTCGTTACAA
*
60379098 TCTGGTGTCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60379125 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60379150 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.19, T:0.37
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60381596 original size:27 final size:26
Alignment explanation
Indices: 60381552--60381603 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60381542 CTCGCTGCAA
*
60381552 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60381579 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60381604 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60384371 original size:24 final size:24
Alignment explanation
Indices: 60384344--60384415 Score: 117
Period size: 24 Copynumber: 3.0 Consensus size: 24
60384334 CAGAATCAAA
60384344 ATTTATTAGCATAATTTATTTGAC
1 ATTTATTAGCATAATTTATTTGAC
* * *
60384368 ATTTATTAGTATAATATATTTAAC
1 ATTTATTAGCATAATTTATTTGAC
60384392 ATTTATTAGCATAATTTATTTGAC
1 ATTTATTAGCATAATTTATTTGAC
60384416 CTACGAATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (24 bp):
ATTTATTAGCATAATTTATTTGAC
Found at i:60391856 original size:87 final size:87
Alignment explanation
Indices: 60391710--60391870 Score: 243
Period size: 87 Copynumber: 1.9 Consensus size: 87
60391700 CCTACCTAAT
* *** *
60391710 TTTTGCACATGGAAAATCCTAAAATAGATAACCTTATTTTGTGTGAATATGTTTAATTTTAGGTG
1 TTTTGCACATGGAAAATCCTAAAATAGATAAACTTATTCAATGTGAATATGTTTAATTTTAGATG
*
60391775 TTTAATTTTTTGCACATTAAGG
66 TTCAATTTTTTGCACATTAAGG
*
60391797 TTTTGCACATGGAAAATCCTAAACTAGATAAACTTATTCAATGTGAAGT-TGTTTAATTTTAGAT
1 TTTTGCACATGGAAAATCCTAAAATAGATAAACTTATTCAATGTGAA-TATGTTTAATTTTAGAT
60391861 GTTCAATTTT
65 GTTCAATTTT
60391871 CACCCAACGA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
87 65 0.98
88 1 0.02
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.43
Consensus pattern (87 bp):
TTTTGCACATGGAAAATCCTAAAATAGATAAACTTATTCAATGTGAATATGTTTAATTTTAGATG
TTCAATTTTTTGCACATTAAGG
Found at i:60393049 original size:20 final size:20
Alignment explanation
Indices: 60393013--60393058 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
60393003 TGCCATTACA
*
60393013 AAAAAAAAAGATCAAAAGAT
1 AAAAAAAAAGATAAAAAGAT
*
60393033 AAAAAAAAAGCA-AAAAAGTT
1 AAAAAAAAAG-ATAAAAAGAT
60393053 AAAAAA
1 AAAAAA
60393059 GAATGCTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 22 0.96
21 1 0.04
ACGTcount: A:0.78, C:0.04, G:0.09, T:0.09
Consensus pattern (20 bp):
AAAAAAAAAGATAAAAAGAT
Found at i:60397012 original size:27 final size:27
Alignment explanation
Indices: 60396973--60397150 Score: 191
Period size: 27 Copynumber: 6.6 Consensus size: 27
60396963 ATTTTGAGCC
* * *
60396973 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
60397000 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
60397027 CGCACACTTAGTGCTACATAGTCAACCT
1 CGCACACTTAGTGCTACATAGTCAA-CT
* *
60397055 CGCACACTTAGTGCCT-CATGGTCAATT
1 CGCACACTTAGTG-CTACATAGTCAACT
* **
60397082 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
60397109 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAGTC-AACT
60397136 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60397151 GTACAATTTA
Statistics
Matches: 130, Mismatches: 15, Indels: 12
0.83 0.10 0.08
Matches are distributed among these distances:
26 1 0.01
27 103 0.79
28 24 0.18
29 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:60397112 original size:82 final size:81
Alignment explanation
Indices: 60396994--60397149 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
60396984 TGCTATATAA
* *
60396994 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTC-AACCTCGC
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAA--TCGC
60397058 ACACTTAGTGCCTCATGG
64 ACACTTAGTGCCTCATGG
* * **
60397076 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
60397140 CACTTAGTGC
65 CACTTAGTGC
60397150 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 16 0.24
82 48 0.73
83 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCTCATGG
Found at i:60405122 original size:27 final size:27
Alignment explanation
Indices: 60405083--60405260 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
60405073 TATTTGAGCC
* * *
60405083 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
60405110 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
60405137 CGCACACTTAGTGCTACATAGTCAACCT
1 CGCACACTTAGTGCTACATAGTCAA-CT
** * *
60405165 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
60405192 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
60405219 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAGTC-AACT
*
60405246 CACACACTTAGTGCT
1 CGCACACTTAGTGCT
60405261 GTACAATTTA
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 103 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:60405222 original size:82 final size:81
Alignment explanation
Indices: 60405104--60405259 Score: 208
Period size: 82 Copynumber: 1.9 Consensus size: 81
60405094 TGCTATATAA
* * *
60405104 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTC-AACCTCGC
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAA--TCAC
60405168 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
60405186 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCACA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCACA
60405250 CACTTAGTGC
65 CACTTAGTGC
60405260 TGTACAATTT
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
81 15 0.23
82 48 0.74
83 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCACAC
ACTTAGTGCCGCATGG
Found at i:60407097 original size:40 final size:39
Alignment explanation
Indices: 60407052--60407204 Score: 175
Period size: 40 Copynumber: 3.8 Consensus size: 39
60407042 GGATTTTAAA
*
60407052 ACTCGCACGAATGCCTTCGGGACTTAACCCGGAATTAGT
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGAATTAGT
* *
60407091 ATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATTAAT
1 A-CTCGCACAAATGCCTTCGGGACTTAACCCGGAATTAGT
** *
60407131 AACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGT
1 -ACTCGCACAAATGCCTTCGGGA-CTTAACCCGGAATTAGT
* *
60407171 CACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 -AC-TCGCACAAATGCCTTCGGGACTTAACCCGGA
60407205 CAGCATTCAA
Statistics
Matches: 98, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
39 4 0.04
40 82 0.84
41 12 0.12
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGAATTAGT
Found at i:60407170 original size:80 final size:80
Alignment explanation
Indices: 60407037--60407204 Score: 209
Period size: 80 Copynumber: 2.1 Consensus size: 80
60407027 GGGTTGTCAC
* * *
60407037 AACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGAATTAGT-A-TCTCGCAC
1 AACCCGGATATTAAAACTCGCACAAATGCCTTCGGGACTTAACCCGGAATTAGTCACT-TAGCAC
60407100 AAAGGCCTTCGGGACTT
65 AAA-GCCTTCGGGACTT
** *
60407117 AACCCGGA-ATTAATAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 AACCCGGATATTAA-AACTCGCACAAATGCCTTCGGGA-CTTAACCCGGAATTAGTCACTTAGCA
60407180 CAAAGCCTTCGGGACTT
64 CAAAGCCTTCGGGACTT
*
60407197 AGCCCGGA
1 AACCCGGA
60407205 CAGCATTCAA
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
79 7 0.09
80 60 0.78
81 9 0.12
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
AACCCGGATATTAAAACTCGCACAAATGCCTTCGGGACTTAACCCGGAATTAGTCACTTAGCACA
AAGCCTTCGGGACTT
Found at i:60415024 original size:40 final size:38
Alignment explanation
Indices: 60414970--60415115 Score: 152
Period size: 40 Copynumber: 3.7 Consensus size: 38
60414960 AGTAACTCAT
*
60414970 ACAATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGC
1 ACAAAGCCTTCGGGACTTAACCCGGAATTAGTA-CTCGC
*
60415009 ACAAAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGC
1 ACAAA-GCCTTCGGGACTTAACCCGGAATTAGT-ACTCGC
** *
60415049 ACAAATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGC
1 ACAAA-GCCTTCGGGA-CTTAACCCGGAAT-TAGT-AC-TCGC
*
60415090 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
60415116 CAGCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
39 9 0.10
40 70 0.77
41 12 0.13
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (38 bp):
ACAAAGCCTTCGGGACTTAACCCGGAATTAGTACTCGC
Found at i:60415034 original size:79 final size:79
Alignment explanation
Indices: 60414936--60415115 Score: 183
Period size: 80 Copynumber: 2.3 Consensus size: 79
60414926 TCGTTCAAGT
* * *
60414936 GCCTTCAGGACATAGCCCGG-TTATAGTAACTCATAC-AATGCCTTCGGGA-CTTAACCCGGA-A
1 GCCTTCGGGACTTAGCCCGGATTA-A-TAACTCACACAAATGCCTTC-GGATCTTAACCCGGATA
*
60414997 TTAGT-A-TCTCGCACAAA
63 -TAGTCACT-TAGCACAAA
* * **
60415014 GGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATAT
1 -GCCTTCGGGACTTAGCCCGG-ATTAATAACTCACACAAATGCCTTCGGATCTTAACCCGGATAT
60415079 AGTCACTTAGCACAAA
64 AGTCACTTAGCACAAA
60415095 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
60415116 CAGCATTCAA
Statistics
Matches: 85, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
79 29 0.34
80 42 0.49
81 13 0.15
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGACTTAGCCCGGATTAATAACTCACACAAATGCCTTCGGATCTTAACCCGGATATAG
TCACTTAGCACAAA
Found at i:60418727 original size:28 final size:28
Alignment explanation
Indices: 60418662--60418787 Score: 209
Period size: 28 Copynumber: 4.5 Consensus size: 28
60418652 ATATTAAGTC
* *
60418662 CGCACACTCAGTGCTATATAATCAA-CT
1 CGCACACTTAGTGCTACATAATCAAGCT
60418689 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
60418717 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
* *
60418745 CGTACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAGCT
60418773 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60418788 GTACAATTTA
Statistics
Matches: 93, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
27 23 0.25
28 70 0.75
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAGCT
Found at i:60433297 original size:41 final size:41
Alignment explanation
Indices: 60433230--60433486 Score: 291
Period size: 41 Copynumber: 6.2 Consensus size: 41
60433220 AATTCAAAAA
* * * *
60433230 AGACGTTTAGCGGCGTTTCTCTAAAAACGCCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
** *
60433271 AGACTTTTTACGGCGTTTTTCCAAAAACGCTGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
* * * *
60433312 AGACTTTTTGCGACGTTTTCCCAAAAACGCCGCTAATACTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
* * *
60433353 AGACTTTTGGCGACGTTTTCCCAAAAACGCCGCTAATACTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
** *
60433394 AGACTTTTGGCGGCGTTTTTATAAAAACGTCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
* * * *
60433435 AGACCTTTGGTGGCGTTTTGGT-AAAAAACGCCGCTAACGCTC
1 AGACTTTTGGCGGCGTTTT--TCCAAAAACGCCGCTAATGCTC
*
60433477 AGACCTTTGG
1 AGACTTTTGG
60433487 AAACGCCGCT
Statistics
Matches: 191, Mismatches: 23, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
41 163 0.85
42 27 0.14
43 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (41 bp):
AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
Found at i:60433498 original size:27 final size:27
Alignment explanation
Indices: 60433460--60433513 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
60433450 TTTTGGTAAA
60433460 AAACGCCGCTAACGCTCAGACCTTTGG
1 AAACGCCGCTAACGCTCAGACCTTTGG
* *
60433487 AAACGCCGCTAATGCTCAGACTTTTGG
1 AAACGCCGCTAACGCTCAGACCTTTGG
60433514 TGGCGTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (27 bp):
AAACGCCGCTAACGCTCAGACCTTTGG
Found at i:60433529 original size:69 final size:68
Alignment explanation
Indices: 60433418--60433554 Score: 202
Period size: 69 Copynumber: 2.0 Consensus size: 68
60433408 GTTTTTATAA
* *
60433418 AAACGTCGCTAATGCTCAGACCTTTGGTGGCGTTTTGGTAAAAAACGCCGCTAACGCTCAGACCT
1 AAACGCCGCTAATGCTCAGACCTTTGGTGGCGTTTTGCT-AAAAACGCCGCTAACGCTCAGACCT
60433483 TTGG
65 TTGG
* * * * *
60433487 AAACGCCGCTAATGCTCAGACTTTTGGTGGCGTTTTTCTAAAAATGCCGCTAATGCTCAGACTTT
1 AAACGCCGCTAATGCTCAGACCTTTGGTGGCGTTTTGCTAAAAACGCCGCTAACGCTCAGACCTT
60433552 TGG
66 TGG
60433555 CGGCGTTTTT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
68 26 0.43
69 35 0.57
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.29
Consensus pattern (68 bp):
AAACGCCGCTAATGCTCAGACCTTTGGTGGCGTTTTGCTAAAAACGCCGCTAACGCTCAGACCTT
TGG
Found at i:60433612 original size:151 final size:150
Alignment explanation
Indices: 60433336--60433621 Score: 376
Period size: 151 Copynumber: 1.9 Consensus size: 150
60433326 GTTTTCCCAA
60433336 AAACGCCGCTAATACTCAGACTTTTGGCGACGTTTTCCCAAAAACGCCGCTAATACTCAGACTTT
1 AAACGCCGCTAATACTCAGACTTTTGGCGACGTTTTCCCAAAAACGCCGCTAATACTCAGACTTT
* * * **
60433401 TGGCGGCGTTTTTATAAAAACGTCGCTAATGCTCAGACCTTTGGTGGCGTTTTGGTAAAAAACGC
66 TGGCGGCGTTTTTAGAAAAACGCCGCGAATGCTCAGACCTTTGACGGCGTTTTGGT-AAAAACGC
60433466 CGCTAACGCTCAGACCTTTGG
130 CGCTAACGCTCAGACCTTTGG
* * * * * * *
60433487 AAACGCCGCTAATGCTCAGACTTTTGGTGGCGTTTTTCTAAAAATGCCGCTAATGCTCAGACTTT
1 AAACGCCGCTAATACTCAGACTTTTGGCGACGTTTTCCCAAAAACGCCGCTAATACTCAGACTTT
* * * * * * *
60433552 TGGCGGCGTTTTTGGAAAAATGCCGCGAATTCTCGGACTTTTTACGGCGTTTCTTG-AAAAACGC
66 TGGCGGCGTTTTTAGAAAAACGCCGCGAATGCTCAGACCTTTGACGGCGTTT-TGGTAAAAACGC
60433616 CGCTAA
130 CGCTAA
60433622 TTCTCGGACT
Statistics
Matches: 115, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
150 14 0.12
151 99 0.86
152 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (150 bp):
AAACGCCGCTAATACTCAGACTTTTGGCGACGTTTTCCCAAAAACGCCGCTAATACTCAGACTTT
TGGCGGCGTTTTTAGAAAAACGCCGCGAATGCTCAGACCTTTGACGGCGTTTTGGTAAAAACGCC
GCTAACGCTCAGACCTTTGG
Found at i:60433644 original size:192 final size:192
Alignment explanation
Indices: 60433295--60433645 Score: 470
Period size: 192 Copynumber: 1.8 Consensus size: 192
60433285 GTTTTTCCAA
* *
60433295 AAACGCTGCTAATGCTCAGACTTTTTGCGACGTTTTCCCAAAAACGCCGCTAATACTCAGACTTT
1 AAACGCCGCTAATGCTCAGACTTTTGGCGACGTTTTCCCAAAAACGCCGCTAATACTCAGACTTT
* * * *
60433360 TGGCGACGTTTTCCCAAAAACGCCGCTAATACTCAGACTTTTGGCGGCGTTTTTATAAAAACGTC
66 TGGCGACGTTTTCCCAAAAACGCCGCGAATACTCAGACTTTTGACGGCGTTTTTAGAAAAACGCC
*
60433425 GCTAATGCTCAGACCTTTGGTGGCGTTTTGGTAAAAAACGCCGCTAACGCTCAGACCTTTGG
131 GCTAATGCTCAGACCTTTGGCGGCGTTTTGGTAAAAAACGCCGCTAACGCTCAGACCTTTGG
* * * * * *
60433487 AAACGCCGCTAATGCTCAGACTTTTGGTGGCGTTTTTCTAAAAATGCCGCTAATGCTCAGACTTT
1 AAACGCCGCTAATGCTCAGACTTTTGGCGACGTTTTCCCAAAAACGCCGCTAATACTCAGACTTT
* *** * * * *
60433552 TGGCGGCGTTTTTGGAAAAATGCCGCGAATTCTCGGACTTTTTACGGCGTTTCTT-GAAAAACGC
66 TGGCGACGTTTTCCCAAAAACGCCGCGAATACTCAGACTTTTGACGGCGTTT-TTAGAAAAACGC
* * *
60433616 CGCTAATTCTCGGACTTTTGGCGGCGTTTT
130 CGCTAATGCTCAGACCTTTGGCGGCGTTTT
60433646 TCCAAAAATG
Statistics
Matches: 134, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
192 132 0.99
193 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.31
Consensus pattern (192 bp):
AAACGCCGCTAATGCTCAGACTTTTGGCGACGTTTTCCCAAAAACGCCGCTAATACTCAGACTTT
TGGCGACGTTTTCCCAAAAACGCCGCGAATACTCAGACTTTTGACGGCGTTTTTAGAAAAACGCC
GCTAATGCTCAGACCTTTGGCGGCGTTTTGGTAAAAAACGCCGCTAACGCTCAGACCTTTGG
Found at i:60433667 original size:41 final size:41
Alignment explanation
Indices: 60433491--60433672 Score: 224
Period size: 41 Copynumber: 4.5 Consensus size: 41
60433481 CTTTGGAAAC
* * *
60433491 GCCGCTAATGCTCAGACTTTTGGTGGCGTTTTTCTAAAAAT
1 GCCGCTAATTCTCAGACTTTTGGCGGCGTTTTTCGAAAAAT
* *
60433532 GCCGCTAATGCTCAGACTTTTGGCGGCGTTTTTGGAAAAAT
1 GCCGCTAATTCTCAGACTTTTGGCGGCGTTTTTCGAAAAAT
* * ** *
60433573 GCCGCGAATTCTCGGACTTTTTACGGCGTTTCTT-GAAAAAC
1 GCCGCTAATTCTCAGACTTTTGGCGGCGTTT-TTCGAAAAAT
* *
60433614 GCCGCTAATTCTCGGACTTTTGGCGGCGTTTTTCCAAAAAT
1 GCCGCTAATTCTCAGACTTTTGGCGGCGTTTTTCGAAAAAT
*
60433655 GCCGCTATTTCTC-GACTT
1 GCCGCTAATTCTCAGACTT
60433673 ATAGTGGCAT
Statistics
Matches: 124, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
40 7 0.06
41 115 0.93
42 2 0.02
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (41 bp):
GCCGCTAATTCTCAGACTTTTGGCGGCGTTTTTCGAAAAAT
Found at i:60437834 original size:51 final size:50
Alignment explanation
Indices: 60437707--60437886 Score: 188
Period size: 51 Copynumber: 3.6 Consensus size: 50
60437697 ATCTGATACG
* * * *
60437707 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATC--CGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGATCAA-AGTCATTGGTACA
* * * *
60437756 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCATTGAGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGCGATCAAAGTCATTG-GTACA
* *
60437807 CATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGT-A-TGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-TCAA-AGTCATTGGTACA
* *
60437857 CGTAATAGCCTGCACTTAGTACTACACACG
1 CATAGTAGCCTGCACTTAGTACTACACACG
60437887 TGTACTCAAA
Statistics
Matches: 109, Mismatches: 17, Indels: 9
0.81 0.13 0.07
Matches are distributed among these distances:
48 3 0.03
49 32 0.29
50 32 0.29
51 36 0.33
52 3 0.03
53 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGATCAAAGTCATTGGTACA
Found at i:60437919 original size:101 final size:98
Alignment explanation
Indices: 60437703--60437888 Score: 291
Period size: 101 Copynumber: 1.9 Consensus size: 98
60437693 AGCTATCTGA
* *
60437703 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACGTAGTAGCCTG
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATACGGTACACGTAATAGCCTG
*
60437768 CACTTAGTACTACACACGTGATCGAAGTCATTGAG
66 CACTTAGTACTACACACGTGATCGAA--CAATGAG
* * *
60437803 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGGTACACGTAATAGCCT
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGAC-CAACAATACGGTACACGTAATAGCCT
60437868 GCACTTAGTACTACACACGTG
65 GCACTTAGTACTACACACGTG
60437889 TACTCAAAAT
Statistics
Matches: 80, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
100 38 0.47
101 42 0.52
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.24
Consensus pattern (98 bp):
TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATACGGTACACGTAATAGCCTG
CACTTAGTACTACACACGTGATCGAACAATGAG
Found at i:60441098 original size:49 final size:48
Alignment explanation
Indices: 60441022--60441199 Score: 160
Period size: 51 Copynumber: 3.6 Consensus size: 48
60441012 ATCTGATACG
* *
60441022 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACCACACATGCGACCAACAAT-TGGTACA
* * * *
60441071 CATAGTAGCCTGCACTTAGTACCACACACGTGATCGAAGTC-ATTGAGTACG
1 CATAGTAGCCTGCACTTAGTACCACACATGCGA-CCAA--CAATTG-GTACA
* * * * * *
60441122 CATAGTAGCCTGCACTTAGTACTACGCATGCAACTTAATAGTATGGTACA
1 CATAGTAGCCTGCACTTAGTACCACACATGCGAC-CAACAAT-TGGTACA
*
60441172 CGTAGTAGCCTGCACTTAGTACACACAC
1 CATAGTAGCCTGCACTTAGTAC-CACAC
60441200 GTGTACTCAA
Statistics
Matches: 103, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
49 30 0.29
50 31 0.30
51 41 0.40
52 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (48 bp):
CATAGTAGCCTGCACTTAGTACCACACATGCGACCAACAATTGGTACA
Found at i:60441141 original size:51 final size:49
Alignment explanation
Indices: 60441018--60441143 Score: 148
Period size: 49 Copynumber: 2.5 Consensus size: 49
60441008 AGCTATCTGA
* *
60441018 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGG
1 TACGCATAGTAGCCTGCACTTAGTACCACACACGCGACCAACAATCCGG
* * * *
60441067 TACACATAGTAGCCTGCACTTAGTACCACACACGTGATCGAAGTC-AT-TGAG
1 TACGCATAGTAGCCTGCACTTAGTACCACACACGCGA-CCAA--CAATCCG-G
60441118 TACGCATAGTAGCCTGCACTTAGTAC
1 TACGCATAGTAGCCTGCACTTAGTAC
60441144 TACGCATGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
49 33 0.50
50 4 0.06
51 28 0.42
52 1 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (49 bp):
TACGCATAGTAGCCTGCACTTAGTACCACACACGCGACCAACAATCCGG
Found at i:60441197 original size:100 final size:100
Alignment explanation
Indices: 60441018--60441202 Score: 282
Period size: 100 Copynumber: 1.9 Consensus size: 100
60441008 AGCTATCTGA
* *
60441018 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACATAGTAGCCTG
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAACAATACGGTACACATAGTAGCCTG
60441083 CACTTAGTACCACACACGTGATCGAAGTCATTGAG
66 CACTTAGTACCACACACGTGATCGAAGTCATTGAG
* * * * * *
60441118 TACGCATAGTAGCCTGCACTTAGTACTACGCATGCAACTTAATAGTATGGTACACGTAGTAGCCT
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCAAC-CAACAATACGGTACACATAGTAGCCT
60441183 GCACTTAGTA-CACACACGTG
65 GCACTTAGTACCACACACGTG
60441203 TACTCAAAAT
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
100 46 0.61
101 30 0.39
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.24
Consensus pattern (100 bp):
TACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAACAATACGGTACACATAGTAGCCTG
CACTTAGTACCACACACGTGATCGAAGTCATTGAG
Found at i:60447195 original size:56 final size:56
Alignment explanation
Indices: 60447128--60447452 Score: 361
Period size: 56 Copynumber: 5.8 Consensus size: 56
60447118 ACATTTTTTA
60447128 GTTGGCATCGATATGTGATTCCGAAATATGTGTACGAGTAAGACCACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGAAATATGTGTACGAGTAAGACCACGTTTAATAC
* * ** * * *
60447184 GTTGGCATCGATATGTGATTCTGATATGCGTGTACAAGTAAGATCACGTTTAATGC
1 GTTGGCATCGATATGTGATTCCGAAATATGTGTACGAGTAAGACCACGTTTAATAC
* ** * * * *
60447240 ATTGGCATTTATATGAGATTTCGAAATATGTTTGCGAGTAAGACCACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGAAATATGTGTACGAGTAAGACCACGTTTAATAC
* **
60447296 GTTGGCATCGATATGTGATTTC--AATATGTGTATGCTTGTAAGACCACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGAAATATGTGTA--CGAGTAAGACCACGTTTAATAC
* * *
60447352 ATTGGCATCGATATGTGATTCCGATATGTATGTGT--GAGCAAGACCACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGA-A-ATATGTGTACGAGTAAGACCACGTTTAATAC
* * * * *
60447408 GTTGGCATTGATATGTGATTCTGATATGTGTTTACGAGTAAGACC
1 GTTGGCATCGATATGTGATTCCGAAATATGTGTACGAGTAAGACC
60447453 CTATCTGGGA
Statistics
Matches: 218, Mismatches: 43, Indels: 16
0.79 0.16 0.06
Matches are distributed among these distances:
54 13 0.06
56 197 0.90
59 1 0.00
60 7 0.03
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (56 bp):
GTTGGCATCGATATGTGATTCCGAAATATGTGTACGAGTAAGACCACGTTTAATAC
Found at i:60447337 original size:112 final size:113
Alignment explanation
Indices: 60447129--60447452 Score: 406
Period size: 112 Copynumber: 2.9 Consensus size: 113
60447119 CATTTTTTAG
* *
60447129 TTGGCATCGATATGTGATTCCGAAATATGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCG
1 TTGGCATCGATATGTGATTCCGAAATATGTTTGCGAGTAAGACCACGTTTAATACGTTGGCATCG
* * * *
60447194 ATATGTGA-TTCTGATATGCGTGTACAAGTAAGATCACGTTTAATGCA
66 ATATGTGATTTCTAATATGCGTATACAAGTAAGACCACGTTTAATACA
** * *
60447241 TTGGCATTTATATGAGATTTCGAAATATGTTTGCGAGTAAGACCACGTTTAATACGTTGGCATCG
1 TTGGCATCGATATGTGATTCCGAAATATGTTTGCGAGTAAGACCACGTTTAATACGTTGGCATCG
* * **
60447306 ATATGTGATTTC-AATATGTGTATGCTTGTAAGACCACGTTTAATACA
66 ATATGTGATTTCTAATATGCGTATACAAGTAAGACCACGTTTAATACA
* *
60447353 TTGGCATCGATATGTGATTCCG--ATATGTATGTGTGAGCAAGACCACGTTTAATACGTTGGCAT
1 TTGGCATCGATATGTGATTCCGAAATATGT-T-TGCGAGTAAGACCACGTTTAATACGTTGGCAT
* * * * *
60447416 TGATATGTGA-TTCTGATATGTGTTTACGAGTAAGACC
64 CGATATGTGATTTCTAATATGCGTATACAAGTAAGACC
60447453 CTATCTGGGA
Statistics
Matches: 182, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
110 6 0.03
111 4 0.02
112 169 0.93
113 3 0.02
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (113 bp):
TTGGCATCGATATGTGATTCCGAAATATGTTTGCGAGTAAGACCACGTTTAATACGTTGGCATCG
ATATGTGATTTCTAATATGCGTATACAAGTAAGACCACGTTTAATACA
Found at i:60447415 original size:168 final size:167
Alignment explanation
Indices: 60447128--60447452 Score: 429
Period size: 168 Copynumber: 1.9 Consensus size: 167
60447118 ACATTTTTTA
*
60447128 GTTGGCATCGATATGTGATTCCGAAATATGTGTACGAGTAAGACCACGTTTAATACGTTGGCATC
1 GTTGGCATCGATATGTGATTCC-AAATATGTGTACGAGTAAGACCACGTTTAATACATTGGCATC
* * * * * *
60447193 GATATGTGATTCTGATATGCGTGTACAAGTAAGATCACGTTTAATGCATTGGCATTTATATGAGA
65 GATATGTGATTCCGATATGCATGTACAAGCAAGACCACGTTTAATACATTGGCATTGATATGAGA
*
60447258 TT-TCGAAATATGTTTGCGAGTAAGACCACGTTTAATAC
130 TTCT-GAAATATGTTTACGAGTAAGACCACGTTTAATAC
* **
60447296 GTTGGCATCGATATGTGATTTC-AATATGTGTATGCTTGTAAGACCACGTTTAATACATTGGCAT
1 GTTGGCATCGATATGTGATTCCAAATATGTGTA--CGAGTAAGACCACGTTTAATACATTGGCAT
* *** * *
60447360 CGATATGTGATTCCGATATGTATGTGTGAGCAAGACCACGTTTAATACGTTGGCATTGATATGTG
64 CGATATGTGATTCCGATATGCATGTACAAGCAAGACCACGTTTAATACATTGGCATTGATATGAG
* *
60447425 ATTCTGATATGTGTTTACGAGTAAGACC
129 ATTCTGAAATATGTTTACGAGTAAGACC
60447453 CTATCTGGGA
Statistics
Matches: 135, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
166 10 0.07
168 124 0.92
169 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (167 bp):
GTTGGCATCGATATGTGATTCCAAATATGTGTACGAGTAAGACCACGTTTAATACATTGGCATCG
ATATGTGATTCCGATATGCATGTACAAGCAAGACCACGTTTAATACATTGGCATTGATATGAGAT
TCTGAAATATGTTTACGAGTAAGACCACGTTTAATAC
Found at i:60451732 original size:22 final size:22
Alignment explanation
Indices: 60451704--60451751 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
60451694 TGTATAATGA
*
60451704 TCTGAAACAACATTATTTCTGG
1 TCTGAAACAACATTATTGCTGG
*
60451726 TCTGAAACAACATTATTGGTGG
1 TCTGAAACAACATTATTGCTGG
60451748 TCTG
1 TCTG
60451752 GGATAAAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (22 bp):
TCTGAAACAACATTATTGCTGG
Found at i:60453458 original size:56 final size:56
Alignment explanation
Indices: 60453370--60453637 Score: 356
Period size: 56 Copynumber: 4.8 Consensus size: 56
60453360 ACATTTTTGA
* * * *
60453370 GTTGGCATCAATATGTGATTCCGAAATATGTGTGCGAGTAAGACCATGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
** * *
60453426 GTTGGCATCGATATGTGATTTTGATATGTGTGTGCGAGTAAGACAACGTTTAATGC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * * * *
60453482 GTTGGCATCGATATGTGATTCCGATATTTATATGCGAGGAAGACCACGCTTAATAT
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* *
60453538 GTTGGCATCGATATGTGATTCCGATATGTGTGTGTGAGTAAGACCACGTTTAATTC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * *
60453594 GTTGGCATCGATATGTGACTCCAATATGTGTTTACGAGTAAGAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGAC
60453638 ACTCTCTAGG
Statistics
Matches: 181, Mismatches: 31, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 181 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (56 bp):
GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
Found at i:60466636 original size:49 final size:47
Alignment explanation
Indices: 60466522--60466691 Score: 250
Period size: 47 Copynumber: 3.6 Consensus size: 47
60466512 TATTTGAATA
60466522 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
60466571 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
60466618 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
60466665 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
60466692 TCCCGAAGGG
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
47 99 0.89
49 12 0.11
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:60473489 original size:28 final size:28
Alignment explanation
Indices: 60473457--60473540 Score: 96
Period size: 28 Copynumber: 3.0 Consensus size: 28
60473447 TCTGTATTTG
* *
60473457 GCCCATTAAGCCCAATCATATTCATATA
1 GCCCATTAGGCCCAATCACATTCATATA
* * *
60473485 GCCCATTAGGCCCAAACCACATTTATATG
1 GCCCATTAGGCCC-AATCACATTCATATA
* *
60473514 GCCCTTTAGGCCCAGTCACATTCATAT
1 GCCCATTAGGCCCAATCACATTCATAT
60473541 TCATGCTCAC
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
28 23 0.50
29 23 0.50
ACGTcount: A:0.30, C:0.31, G:0.12, T:0.27
Consensus pattern (28 bp):
GCCCATTAGGCCCAATCACATTCATATA
Found at i:60484910 original size:43 final size:43
Alignment explanation
Indices: 60484844--60485000 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 43
60484834 AGCTAGTACA
* * *
60484844 ATGCCAATGTCCAAGACGTGGTCTTAAATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATATCG
* * * *
60484887 ATGCCACTGTCCCAGACAAGGTCTTACATGAAATTAAATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATATCG
* * *
60484929 ATGCCGATGTCCCAGGCATGGTCTTACACGTAAATCTCAAAT-T-G
1 ATGCCAATGTCCCAGACATGGTCTTACATGT-AA--TCAAATATCG
**
60484973 ATGCCAATGTCCCAGATGTGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
60485001 CGATAACACT
Statistics
Matches: 92, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 27 0.29
43 35 0.38
44 25 0.27
45 5 0.05
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATATCG
Found at i:60491889 original size:43 final size:43
Alignment explanation
Indices: 60491807--60491966 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
60491797 ACCTAGTACA
* * * * *
60491807 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATTG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATTAAATATCG
*
60491850 ATGCC-ACTGTCCCAGACAAGGTCTTACACGAAATTAAATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAATTAAATATCG
*** * * *
60491892 ATGTTGATGTCCCAGACATGGTTTTACACGTAAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAAT-TAAATATCG
*
60491936 ATGCCAACGTCCCAGACGTGGTCTTACACGA
1 ATGCCAACGTCCCAGACATGGTCTTACACGA
60491967 TAACACATAT
Statistics
Matches: 94, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
42 26 0.28
43 39 0.41
44 29 0.31
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATTAAATATCG
Found at i:60497645 original size:47 final size:48
Alignment explanation
Indices: 60497592--60497707 Score: 134
Period size: 45 Copynumber: 2.5 Consensus size: 48
60497582 GTAAACTCAG
*
60497592 ACTCAACTCAACGAGTTCGGATGCCTAGTTACATC-TCA-CGAACTCGA
1 ACTCAACTCAACGAGTTCGGATGCC-AGTTACATCATAAGCGAACTCGA
* * * * *
60497639 ACTCAACTCAATGAGTTCGGA---CATTTGCATCATAAGTGAACTCGG
1 ACTCAACTCAACGAGTTCGGATGCCAGTTACATCATAAGCGAACTCGA
60497684 ACTCAACTCAACGAGTTCGGATGC
1 ACTCAACTCAACGAGTTCGGATGC
60497708 TCAACCATCC
Statistics
Matches: 57, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
43 7 0.12
44 3 0.05
45 27 0.47
47 20 0.35
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (48 bp):
ACTCAACTCAACGAGTTCGGATGCCAGTTACATCATAAGCGAACTCGA
Found at i:60497705 original size:92 final size:93
Alignment explanation
Indices: 60497537--60497707 Score: 256
Period size: 92 Copynumber: 1.8 Consensus size: 93
60497527 CGCCCATAAG
* * *
60497537 CGAACTCGGACTCAACTCAATGAGCTCAGGCGTTCGCATCCATGAGTAAACTCAGACTCAACTCA
1 CGAACTCGAACTCAACTCAATGAGCTCAGGCATTCGCATCCATAAGTAAACTCAGACTCAACTCA
60497602 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * *
60497630 CGAACTCGAACTCAACTCAATGAGTTC-GGACATTTGCAT-CATAAGTGAACTCGGACTCAACTC
1 CGAACTCGAACTCAACTCAATGAGCTCAGG-CATTCGCATCCATAAGTAAACTCAGACTCAACTC
60497693 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
60497708 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
92 38 0.54
93 32 0.46
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAATGAGCTCAGGCATTCGCATCCATAAGTAAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:60500067 original size:14 final size:16
Alignment explanation
Indices: 60500048--60500097 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 16
60500038 CAAAGATAAC
60500048 AAGAAAAT-C-GAATA
1 AAGAAAATCCAGAATA
60500062 AAG-AAATCCAGAATA
1 AAGAAAATCCAGAATA
* *
60500077 AAG-AGATCCAGGATA
1 AAGAAAATCCAGAATA
60500092 AAGAAA
1 AAGAAA
60500098 CCCAAGATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
13 4 0.13
14 4 0.13
15 21 0.70
16 1 0.03
ACGTcount: A:0.60, C:0.10, G:0.18, T:0.12
Consensus pattern (16 bp):
AAGAAAATCCAGAATA
Found at i:60500077 original size:15 final size:15
Alignment explanation
Indices: 60500057--60500097 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
60500047 CAAGAAAATC
60500057 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
60500072 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
60500087 GGATAAAGAAA
1 GAATAAAGAAA
60500098 CCCAAGATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.59, C:0.10, G:0.20, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:60500106 original size:15 final size:15
Alignment explanation
Indices: 60500059--60500106 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
60500049 AGAAAATCGA
60500059 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
60500073 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
60500089 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
60500104 ATA
1 ATA
60500107 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:60503111 original size:46 final size:46
Alignment explanation
Indices: 60503019--60503147 Score: 186
Period size: 46 Copynumber: 2.8 Consensus size: 46
60503009 TGTAACCCGC
* * * * *
60503019 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
60503065 CCATGAGTGAACTCGGACGCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
60503111 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
60503148 TGCTCAACCA
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:60505284 original size:19 final size:19
Alignment explanation
Indices: 60505260--60505297 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
60505250 AAAAAAAAGG
60505260 TAAAATAATAATAAGTTAA
1 TAAAATAATAATAAGTTAA
60505279 TAAAATAATAATAAGTTAA
1 TAAAATAATAATAAGTTAA
60505298 CGTATGTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (19 bp):
TAAAATAATAATAAGTTAA
Found at i:60514667 original size:31 final size:31
Alignment explanation
Indices: 60514600--60514707 Score: 132
Period size: 31 Copynumber: 3.5 Consensus size: 31
60514590 CTCGACATAT
* * *
60514600 ACTGGGCCGAAGCC-TTTCGTTTAA-C-AATT
1 ACTGGGCCGAAGCCTTTTC-ATAAATCAAATC
60514629 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
*
60514660 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
* *
60514691 ATTGGGCCAAAGCCTTT
1 ACTGGGCCGAAGCCTTT
60514708 ATTATAAACG
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
29 17 0.24
30 5 0.07
31 48 0.69
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCAAATC
Found at i:60514791 original size:42 final size:42
Alignment explanation
Indices: 60514731--60514822 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
60514721 TGGCCCATAG
*
60514731 GCCCATTTCAATAACACATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
*
60514773 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
60514815 GCCCATTT
1 GCCCATTT
60514823 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:60515007 original size:25 final size:25
Alignment explanation
Indices: 60514975--60515064 Score: 135
Period size: 25 Copynumber: 3.6 Consensus size: 25
60514965 TTAATAATTG
*
60514975 GGGCAAAGCCCTTTTTGATAAACTA
1 GGGCAAAGCCCTTTTCGATAAACTA
* *
60515000 GGGCAAAGCCCTTTTCGATAAATTG
1 GGGCAAAGCCCTTTTCGATAAACTA
*
60515025 GGGCAAAGCCCTTTTCGGTAAACTA
1 GGGCAAAGCCCTTTTCGATAAACTA
*
60515050 GGGCATAGCCCTTTT
1 GGGCAAAGCCCTTTT
60515065 AGCACTTCCT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 58 1.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (25 bp):
GGGCAAAGCCCTTTTCGATAAACTA
Found at i:60515029 original size:50 final size:50
Alignment explanation
Indices: 60514970--60515064 Score: 163
Period size: 50 Copynumber: 1.9 Consensus size: 50
60514960 CTCTTTTAAT
*
60514970 AATTGGGGCAAAGCCCTTTTTGATAAACTAGGGCAAAGCCCTTTTCGATA
1 AATTGGGGCAAAGCCCTTTTCGATAAACTAGGGCAAAGCCCTTTTCGATA
* *
60515020 AATTGGGGCAAAGCCCTTTTCGGTAAACTAGGGCATAGCCCTTTT
1 AATTGGGGCAAAGCCCTTTTCGATAAACTAGGGCAAAGCCCTTTT
60515065 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (50 bp):
AATTGGGGCAAAGCCCTTTTCGATAAACTAGGGCAAAGCCCTTTTCGATA
Found at i:60515904 original size:27 final size:27
Alignment explanation
Indices: 60515874--60515938 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
60515864 GGGCATATTC
60515874 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * * *
60515901 GTCACTTTACCCTACAGGGGCTTTATG
1 GTCATTTTACCATACAAGGGCTTTACG
*
60515928 GTCTTTTTACC
1 GTCATTTTACC
60515939 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:60516022 original size:27 final size:27
Alignment explanation
Indices: 60515992--60516075 Score: 82
Period size: 27 Copynumber: 3.0 Consensus size: 27
60515982 GTAAATCTAC
60515992 AAACCAATGGTATTTCAGTAATTTTGT
1 AAACCAATGGTATTTCAGTAATTTTGT
*
60516019 AAACTAATGGTATTTCTA-TAATTTT-T
1 AAACCAATGGTATTTC-AGTAATTTTGT
* * *
60516045 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAATGGTATTTCAGTAATTTTGT
60516075 A
1 A
60516076 CATCAAGAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
26 1 0.02
27 22 0.48
28 5 0.11
29 17 0.37
30 1 0.02
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.43
Consensus pattern (27 bp):
AAACCAATGGTATTTCAGTAATTTTGT
Found at i:60516114 original size:27 final size:27
Alignment explanation
Indices: 60516084--60516208 Score: 180
Period size: 27 Copynumber: 4.6 Consensus size: 27
60516074 TACATCAAGA
*
60516084 GTATTTTGGTAATTTTACAAA-TTGAGG
1 GTATTTTGGTAATTTTACAAACTAG-GG
* * * *
60516111 GTATTTCGATAATTTCACAAACTAGTG
1 GTATTTTGGTAATTTTACAAACTAGGG
*
60516138 GTATTTCGGTAATTTTACAAACTAGGG
1 GTATTTTGGTAATTTTACAAACTAGGG
60516165 GTATTTTGGTAATTTTACAAACTAGGG
1 GTATTTTGGTAATTTTACAAACTAGGG
60516192 GTATTTTGGTAATTTTA
1 GTATTTTGGTAATTTTA
60516209 TCCTACAGGG
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 86 0.98
28 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACTAGGG
Found at i:60516218 original size:27 final size:27
Alignment explanation
Indices: 60516084--60516238 Score: 179
Period size: 27 Copynumber: 5.7 Consensus size: 27
60516074 TACATCAAGA
* *
60516084 GTATTTTGGTAATTTTACAAA-TTGAGG
1 GTATTTCGGTAATTTTACAAACTAG-GG
* * *
60516111 GTATTTCGATAATTTCACAAACTAGTG
1 GTATTTCGGTAATTTTACAAACTAGGG
60516138 GTATTTCGGTAATTTTACAAACTAGGG
1 GTATTTCGGTAATTTTACAAACTAGGG
*
60516165 GTATTTTGGTAATTTTACAAACTAGGG
1 GTATTTCGGTAATTTTACAAACTAGGG
* **
60516192 GTATTTTGGTAATTTTATCCTAC-AGGG
1 GTATTTCGGTAATTTTA-CAAACTAGGG
* *
60516219 GTATTTCAGTAATTTCACAA
1 GTATTTCGGTAATTTTACAA
60516239 TCGAAGGTAA
Statistics
Matches: 110, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 104 0.95
28 5 0.05
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (27 bp):
GTATTTCGGTAATTTTACAAACTAGGG
Found at i:60516222 original size:81 final size:81
Alignment explanation
Indices: 60516084--60516238 Score: 197
Period size: 81 Copynumber: 1.9 Consensus size: 81
60516074 TACATCAAGA
* * *
60516084 GTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAACTAGTGGTATTTCGGTA
1 GTATTTTGGTAATTTTACAAATAGAGGGTATTTCGATAATTTCACAAACTAGGGGTATTTCAGTA
*
60516149 ATTTTACAAACTAGGG
66 ATTTCACAAACTAGGG
* * * **
60516165 GTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTATCCTAC-AGGGGTATTTCAG
1 GTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGATAATTTCA-CAAACTAGGGGTATTTCAG
60516228 TAATTTCACAA
64 TAATTTCACAA
60516239 TCGAAGGTAA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
81 58 0.92
82 5 0.08
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (81 bp):
GTATTTTGGTAATTTTACAAATAGAGGGTATTTCGATAATTTCACAAACTAGGGGTATTTCAGTA
ATTTCACAAACTAGGG
Found at i:60516256 original size:26 final size:27
Alignment explanation
Indices: 60516227--60516286 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
60516217 GGGTATTTCA
*
60516227 GTAATTTCACAATC-GAAGGTAAAATG
1 GTAATTTCACAAACTGAAGGTAAAATG
*** *
60516253 GTAATTTTGTAAACTGAGGGTAAAATG
1 GTAATTTCACAAACTGAAGGTAAAATG
60516280 GTAATTT
1 GTAATTT
60516287 TGTAAATCAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 10 0.36
27 18 0.64
ACGTcount: A:0.38, C:0.07, G:0.22, T:0.33
Consensus pattern (27 bp):
GTAATTTCACAAACTGAAGGTAAAATG
Found at i:60516354 original size:81 final size:81
Alignment explanation
Indices: 60516237--60516428 Score: 276
Period size: 81 Copynumber: 2.4 Consensus size: 81
60516227 GTAATTTCAC
* * * * *
60516237 AATCGAAGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTA
* *
60516302 AAATAGTAATTCTGTA
66 AAACAGTAATTCTATA
* * *
60516318 AATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTA
*
60516383 AAACGGTAATTCTATA
66 AAACAGTAATTCTATA
*
60516399 AATCGAGGGTAAAATGGTAATTCTACAAAT
1 AATCGAGGGTAAAATGGTAATTCTATAAAT
60516429 CAAGGGCATT
Statistics
Matches: 98, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 98 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTA
AAACAGTAATTCTATA
Found at i:60516429 original size:27 final size:27
Alignment explanation
Indices: 60516237--60516422 Score: 239
Period size: 27 Copynumber: 6.9 Consensus size: 27
60516227 GTAATTTCAC
* *
60516237 AATCGAAGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
60516264 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
* *
60516291 AATCAAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
60516318 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
60516345 AATTGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
60516372 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
60516399 AATCGAGGGTAAAATGGTAATTCT
1 AATCGAGGGTAAAATGGTAATTCT
60516423 ACAAATCAAG
Statistics
Matches: 140, Mismatches: 17, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 138 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:60516446 original size:81 final size:81
Alignment explanation
Indices: 60516280--60516454 Score: 215
Period size: 81 Copynumber: 2.2 Consensus size: 81
60516270 GGGTAAAATG
* * *
60516280 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTACA
** * *
60516345 AATTGAGGGTAAAACG
66 AATCAAGGGCAAAACA
* * * *
60516361 GTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
1 GTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTACA
***
60516426 AATCAAGGGCATTTCA
66 AATCAAGGGCAAAACA
*
60516442 GTAATTTGGTAAA
1 GTAATTTTGTAAA
60516455 CTAAAGTATT
Statistics
Matches: 79, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (81 bp):
GTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTACA
AATCAAGGGCAAAACA
Found at i:60517280 original size:21 final size:22
Alignment explanation
Indices: 60517238--60517280 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
60517228 TAAACGAATT
* *
60517238 ACAATATTATTTAACTACATAA
1 ACAATATAATTTAACTAAATAA
60517260 ACAATATAATTT-ACTAAATAA
1 ACAATATAATTTAACTAAATAA
60517281 TTACATGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (22 bp):
ACAATATAATTTAACTAAATAA
Found at i:60517308 original size:21 final size:21
Alignment explanation
Indices: 60517284--60517324 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
60517274 TAAATAATTA
60517284 CATGTAAAGAACTATTTTAGG
1 CATGTAAAGAACTATTTTAGG
60517305 CATGTAAAGAACTATTTTAG
1 CATGTAAAGAACTATTTTAG
60517325 TTATGCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34
Consensus pattern (21 bp):
CATGTAAAGAACTATTTTAGG
Found at i:60520736 original size:5 final size:5
Alignment explanation
Indices: 60520718--60520757 Score: 71
Period size: 5 Copynumber: 7.8 Consensus size: 5
60520708 AATTGGCTTT
60520718 TATAA TATATA TATAA TATAA TATAA TATAA TATAA TATA
1 TATAA TATA-A TATAA TATAA TATAA TATAA TATAA TATA
60520758 TGCATGACTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 29 0.85
6 5 0.15
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:60524923 original size:47 final size:47
Alignment explanation
Indices: 60524857--60525095 Score: 370
Period size: 47 Copynumber: 5.1 Consensus size: 47
60524847 GAAATGATAG
60524857 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
60524904 TAAGGCCTAATAGCCGATGTAATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60524951 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60524998 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
60525045 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
60525092 TAAG
1 TAAG
60525096 TCCCGAAGGG
Statistics
Matches: 175, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 175 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:60525270 original size:37 final size:37
Alignment explanation
Indices: 60525214--60525292 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
60525204 CCGAGCTCTA
* *
60525214 AAGACCCGATGACTACGTGTGGGAAATT-TGTTCGGGT
1 AAGACCCGATAACTACGTGT-GGAAATTATGTCCGGGT
* *
60525251 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAAATTATGTCCGGGT
60525288 AAGAC
1 AAGAC
60525293 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 6 0.16
37 31 0.84
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAAATTATGTCCGGGT
Found at i:60527203 original size:43 final size:43
Alignment explanation
Indices: 60527155--60527300 Score: 292
Period size: 43 Copynumber: 3.4 Consensus size: 43
60527145 TTGGTTTTCA
60527155 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
60527198 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
60527241 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
60527284 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
60527301 TTGAAATGCA
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:60527317 original size:29 final size:29
Alignment explanation
Indices: 60527282--60527355 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
60527272 GTTGTGAGAT
* *
60527282 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
60527311 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
60527340 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
60527356 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:60531244 original size:28 final size:28
Alignment explanation
Indices: 60531181--60531278 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
60531171 ATATTAAGTC
*
60531181 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
60531208 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
60531236 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
60531264 CTCACACTTAGTGCT
1 CGCACACTTAGTGCT
60531279 GTACAATTTA
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
27 21 0.32
28 44 0.68
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:60533202 original size:36 final size:36
Alignment explanation
Indices: 60533150--60533222 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
60533140 GTCACATGAC
* *
60533150 TTAAATGAAGCAAAACATTATATATATGCATTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
*
60533186 TTAAATGAAGCTAAACAGTATACATATGCATTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
60533222 T
1 T
60533223 ATATATATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.33
Consensus pattern (36 bp):
TTAAATGAAGCAAAACAGTATACATATGCATTAATA
Found at i:60533359 original size:43 final size:42
Alignment explanation
Indices: 60533269--60533401 Score: 118
Period size: 43 Copynumber: 3.3 Consensus size: 42
60533259 CTAATTATGA
** **
60533269 TATATATATGCAATTATGCATGACTTAAATGAAGTTAAATGG
1 TATATATATGCAATTATGCATGACTTAAATGAAGCAAAACAG
* *
60533311 AATATATATGC-ATTATGCGCATGACTTAAATGAAGCAAAACAT
1 TATATATATGCAATTAT--GCATGACTTAAATGAAGCAAAACAG
* *
60533354 TATATATATGC-CTTA---AT-A-TTAAATGAAGCTAAACAG
1 TATATATATGCAATTATGCATGACTTAAATGAAGCAAAACAG
*
60533390 TATACATATGCA
1 TATATATATGCA
60533402 TTAATATATA
Statistics
Matches: 77, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
36 26 0.34
37 1 0.01
38 2 0.03
41 5 0.06
42 10 0.13
43 33 0.43
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (42 bp):
TATATATATGCAATTATGCATGACTTAAATGAAGCAAAACAG
Found at i:60533376 original size:36 final size:36
Alignment explanation
Indices: 60533336--60533408 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
60533326 TGCGCATGAC
* * *
60533336 TTAAATGAAGCAAAACATTATATATATGCCTTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
*
60533372 TTAAATGAAGCTAAACAGTATACATATGCATTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
60533408 T
1 T
60533409 ATATATGCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.47, C:0.11, G:0.10, T:0.33
Consensus pattern (36 bp):
TTAAATGAAGCAAAACAGTATACATATGCATTAATA
Found at i:60533488 original size:182 final size:182
Alignment explanation
Indices: 60533144--60533828 Score: 1208
Period size: 182 Copynumber: 3.7 Consensus size: 182
60533134 TGAGCTGTCA
60533144 CATGACTTAAATGAAGCAAAACATTATATATATGCATTAATATTAAATGAAGCTAAACAGTATAC
1 CATGACTTAAATGAAGCAAAACATTATATATATGCATTAATATTAAATGAAGCTAAACAGTATAC
60533209 ATATGCATTAATATATATATATATGCTTGGCTTAACTCAAGCTAAACCTGCTAATTATGATATAT
66 ATATGCA-T--TA-ATATATATATGCTTGGCTTAACTCAAGCTAAACCTGCTAATTATGATATAT
60533274 ATATGCAATTATGCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGCG
127 ATATGCAATTATGCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGCG
*
60533330 CATGACTTAAATGAAGCAAAACATTATATATATGCCTTAATATTAAATGAAGCTAAACAGTATAC
1 CATGACTTAAATGAAGCAAAACATTATATATATGCATTAATATTAAATGAAGCTAAACAGTATAC
60533395 ATATGCATTAATATATATATGCTTGGCTTAACTCAAGCTAAACCTGCTAATTATGATATATATAT
66 ATATGCATTAATATATATATGCTTGGCTTAACTCAAGCTAAACCTGCTAATTATGATATATATAT
60533460 GCAATTATGCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGCG
131 GCAATTATGCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGCG
*
60533512 CATGACTTAAATGAAGCAAAACATTATATATATGCCTTAATATTAAATGAAGCTAAACAGTATAC
1 CATGACTTAAATGAAGCAAAACATTATATATATGCATTAATATTAAATGAAGCTAAACAGTATAC
* *
60533577 ATATGCATTAATATATATATGCTTGGCTTAACTCAAGCTAAACCTGCAAATTATGGTATATATAT
66 ATATGCATTAATATATATATGCTTGGCTTAACTCAAGCTAAACCTGCTAATTATGATATATATAT
*
60533642 GCAATTATGCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGTG
131 GCAATTATGCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGCG
*
60533694 CATGACTTAAACGAAGCAAAACATTATATATATGCATTAATATTAAATGAAGCTAAACAGTATAC
1 CATGACTTAAATGAAGCAAAACATTATATATATGCATTAATATTAAATGAAGCTAAACAGTATAC
* * * * * *
60533759 ATATGCATTAATATACATATATGCTTGACTTAAATGAAGTTAAACCTGCTAATAATGGTATATAT
66 ATATGCATTAATAT--ATATATGCTTGGCTTAACTCAAGCTAAACCTGCTAATTATGATATATAT
60533824 ATGCA
129 ATGCA
60533829 TGACTTAAAT
Statistics
Matches: 485, Mismatches: 12, Indels: 6
0.96 0.02 0.01
Matches are distributed among these distances:
182 363 0.75
183 2 0.00
184 48 0.10
185 1 0.00
186 71 0.15
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.33
Consensus pattern (182 bp):
CATGACTTAAATGAAGCAAAACATTATATATATGCATTAATATTAAATGAAGCTAAACAGTATAC
ATATGCATTAATATATATATGCTTGGCTTAACTCAAGCTAAACCTGCTAATTATGATATATATAT
GCAATTATGCATGACTTAAATGAAGTTAAATGGAATATATATGCATTATGCG
Found at i:60533541 original size:43 final size:42
Alignment explanation
Indices: 60533451--60533583 Score: 118
Period size: 43 Copynumber: 3.3 Consensus size: 42
60533441 CTAATTATGA
** **
60533451 TATATATATGCAATTATGCATGACTTAAATGAAGTTAAATGG
1 TATATATATGCAATTATGCATGACTTAAATGAAGCAAAACAG
* *
60533493 AATATATATGC-ATTATGCGCATGACTTAAATGAAGCAAAACAT
1 TATATATATGCAATTAT--GCATGACTTAAATGAAGCAAAACAG
* *
60533536 TATATATATGC-CTTA---AT-A-TTAAATGAAGCTAAACAG
1 TATATATATGCAATTATGCATGACTTAAATGAAGCAAAACAG
*
60533572 TATACATATGCA
1 TATATATATGCA
60533584 TTAATATATA
Statistics
Matches: 77, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
36 26 0.34
37 1 0.01
38 2 0.03
41 5 0.06
42 10 0.13
43 33 0.43
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (42 bp):
TATATATATGCAATTATGCATGACTTAAATGAAGCAAAACAG
Found at i:60533558 original size:36 final size:36
Alignment explanation
Indices: 60533518--60533590 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
60533508 TGCGCATGAC
* * *
60533518 TTAAATGAAGCAAAACATTATATATATGCCTTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
*
60533554 TTAAATGAAGCTAAACAGTATACATATGCATTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
60533590 T
1 T
60533591 ATATATGCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.47, C:0.11, G:0.10, T:0.33
Consensus pattern (36 bp):
TTAAATGAAGCAAAACAGTATACATATGCATTAATA
Found at i:60533723 original size:43 final size:41
Alignment explanation
Indices: 60533632--60533768 Score: 122
Period size: 43 Copynumber: 3.4 Consensus size: 41
60533622 GCAAATTATG
* ** **
60533632 GTATATATATGCAATTATGCATGACTTAAATGAAGTTAAATG
1 GTATATATATGC-ATTATGCATGACTTAAACGAAGCAAAACA
*
60533674 GAATATATATGCATTATGTGCATGACTTAAACGAAGCAAAACA
1 GTATATATATGCATTA--TGCATGACTTAAACGAAGCAAAACA
* * *
60533717 TTATATATATGCATTA---AT-A-TTAAATGAAGCTAAACA
1 GTATATATATGCATTATGCATGACTTAAACGAAGCAAAACA
*
60533753 GTATACATATGCATTA
1 GTATATATATGCATTA
60533769 ATATACATAT
Statistics
Matches: 81, Mismatches: 12, Indels: 10
0.79 0.12 0.10
Matches are distributed among these distances:
36 29 0.36
37 1 0.01
38 2 0.02
41 4 0.05
42 11 0.14
43 34 0.42
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (41 bp):
GTATATATATGCATTATGCATGACTTAAACGAAGCAAAACA
Found at i:60533740 original size:36 final size:36
Alignment explanation
Indices: 60533700--60533772 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
60533690 TGTGCATGAC
* *
60533700 TTAAACGAAGCAAAACATTATATATATGCATTAATA
1 TTAAACGAAGCAAAACAGTATACATATGCATTAATA
* *
60533736 TTAAATGAAGCTAAACAGTATACATATGCATTAATA
1 TTAAACGAAGCAAAACAGTATACATATGCATTAATA
60533772 T
1 T
60533773 ACATATATGC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.48, C:0.11, G:0.10, T:0.32
Consensus pattern (36 bp):
TTAAACGAAGCAAAACAGTATACATATGCATTAATA
Done.