Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 181 of 344
Found at i:60533833 original size:45 final size:45
Alignment explanation
Indices: 60533775--60533862 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
60533765 ATTAATATAC
* **
60533775 ATATATGCTTGACTTAAATGAAGTTAAACCTGCTAATAATGGTAT
1 ATATATGCATGACTTAAATGAAACTAAACCTGCTAATAATGGTAT
60533820 ATATATGCATGACTTAAATGAAACTAAACCTGCTAATAATGGT
1 ATATATGCATGACTTAAATGAAACTAAACCTGCTAATAATGGT
60533863 TAATTTAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (45 bp):
ATATATGCATGACTTAAATGAAACTAAACCTGCTAATAATGGTAT
Found at i:60533961 original size:16 final size:16
Alignment explanation
Indices: 60533940--60533971 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
60533930 ACAAGACAGG
*
60533940 CAGAAACATGGAAACT
1 CAGAAACATAGAAACT
60533956 CAGAAACATAGAAACT
1 CAGAAACATAGAAACT
60533972 TTGATTAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.19, G:0.16, T:0.12
Consensus pattern (16 bp):
CAGAAACATAGAAACT
Found at i:60534318 original size:21 final size:21
Alignment explanation
Indices: 60534266--60534306 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
60534256 ACAACTGACG
60534266 TTGGTTGTGGCTTGTGGAACC
1 TTGGTTGTGGCTTGTGGAACC
*
60534287 TTGTTTGTGGCTTGTGGAAC
1 TTGGTTGTGGCTTGTGGAAC
60534307 TGTGGTCGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.10, C:0.12, G:0.37, T:0.41
Consensus pattern (21 bp):
TTGGTTGTGGCTTGTGGAACC
Found at i:60534470 original size:36 final size:36
Alignment explanation
Indices: 60534423--60534494 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
60534413 TAAAGAAGAA
*
60534423 AGGAAAAATTGGGGGAGGGGGTGGGAATTTGGAACG
1 AGGAAAAATTGGCGGAGGGGGTGGGAATTTGGAACG
60534459 AGGAAAAATTGGCGGAGGGGGTGGGAATTTGGAACG
1 AGGAAAAATTGGCGGAGGGGGTGGGAATTTGGAACG
60534495 GTAGAAAGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.31, C:0.04, G:0.49, T:0.17
Consensus pattern (36 bp):
AGGAAAAATTGGCGGAGGGGGTGGGAATTTGGAACG
Found at i:60537577 original size:41 final size:41
Alignment explanation
Indices: 60537416--60537577 Score: 163
Period size: 41 Copynumber: 3.9 Consensus size: 41
60537406 GCTAATCGGG
*
60537416 GTCTAAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
1 GTCTAAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* * *
60537457 G-CTAATAACCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAA-ATCCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGT
* * *
60537500 GT-TAAAACCG-GACTTAGT-TCCGAAGGGCATTCGAGCCAGT
1 GTCTAAATCCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT
*
60537540 GGTCT-AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCC
1 -GTCTAAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCC
60537578 GATGCTAAGA
Statistics
Matches: 100, Mismatches: 11, Indels: 20
0.76 0.08 0.15
Matches are distributed among these distances:
40 12 0.12
41 50 0.50
42 26 0.26
43 12 0.12
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (41 bp):
GTCTAAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:60561230 original size:18 final size:18
Alignment explanation
Indices: 60561203--60561245 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
60561193 TCCACTGCTT
*
60561203 ATAATTATAATGAAAATA
1 ATAATAATAATGAAAATA
** *
60561221 ATAATAATAATTCAAGTA
1 ATAATAATAATGAAAATA
60561239 ATAATAA
1 ATAATAA
60561246 CATAATGAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (18 bp):
ATAATAATAATGAAAATA
Found at i:60562166 original size:29 final size:29
Alignment explanation
Indices: 60562103--60562217 Score: 151
Period size: 29 Copynumber: 4.0 Consensus size: 29
60562093 AACATACCTG
* * *
60562103 TATATGGCCCACTAGACCC-AATCACGTT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
60562131 TATATGGCCCATTAGGCCCAATTCACATA
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
60562160 TATATGGCCCATCAGGCCCAAATCAGATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
60562189 TATATGGCCCATGAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
60562218 CACAGTCATG
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 17 0.23
29 58 0.77
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:60571250 original size:27 final size:26
Alignment explanation
Indices: 60571220--60571320 Score: 148
Period size: 27 Copynumber: 3.8 Consensus size: 26
60571210 TTAGTGGTTA
*
60571220 TGCCACAATTATCTGATCTGGTGGCTC
1 TGCCAC-ATTATCTGTTCTGGTGGCTC
60571247 TGCCACATATATCTGTTCTGGTGGCTC
1 TGCCACAT-TATCTGTTCTGGTGGCTC
*
60571274 TGCCACAATTATCTGTTCTGGTGACTC
1 TGCCAC-ATTATCTGTTCTGGTGGCTC
*
60571301 TGTCACATTATCTGTTCTGG
1 TGCCACATTATCTGTTCTGG
60571321 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
26 16 0.23
27 51 0.74
28 2 0.03
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.38
Consensus pattern (26 bp):
TGCCACATTATCTGTTCTGGTGGCTC
Found at i:60577573 original size:14 final size:14
Alignment explanation
Indices: 60577554--60577582 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
60577544 TAATTAAGTG
60577554 TAGTTTAGAAAACA
1 TAGTTTAGAAAACA
60577568 TAGTTTAGAAAACA
1 TAGTTTAGAAAACA
60577582 T
1 T
60577583 CCCTTCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.31
Consensus pattern (14 bp):
TAGTTTAGAAAACA
Found at i:60594679 original size:27 final size:26
Alignment explanation
Indices: 60594636--60594747 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
60594626 AGGAAGCGTC
* *
60594636 CTGGTGGCTATGCCACAATTTTCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
60594663 CTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
60594690 CTAGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
60594718 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
60594744 CTGG
1 CTGG
60594748 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 7 0.10
27 48 0.68
28 16 0.23
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:60594740 original size:54 final size:54
Alignment explanation
Indices: 60594639--60594745 Score: 162
Period size: 54 Copynumber: 2.0 Consensus size: 54
60594629 AAGCGTCCTG
* *
60594639 GTGGCTATGCCACAATTTTCTGATCTGGTGGCTCTGTCACATATATCTGTTCTA
1 GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGTCACATATATCTGTTCTA
* *
60594693 GTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTCT
1 GTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGTCACATATATCTGTTCT
60594746 GGCAGCCATG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
54 29 0.60
55 19 0.40
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (54 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGTCACATATATCTGTTCTA
Found at i:60596746 original size:27 final size:26
Alignment explanation
Indices: 60596667--60596777 Score: 105
Period size: 27 Copynumber: 4.1 Consensus size: 26
60596657 AGCATGGATG
* *
60596667 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* * * *
60596693 CCAGATACAAATAATATTGGTAAAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
60596721 CAAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
60596748 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
60596775 CCA
1 CCA
60596778 CGACGCTTCC
Statistics
Matches: 67, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
26 6 0.09
27 48 0.72
28 13 0.19
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:60596774 original size:54 final size:54
Alignment explanation
Indices: 60596669--60596775 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 54
60596659 CATGGATGCC
* *
60596669 AGAACAGATAATGTGACAGAGTCACCAGATACAAATAATATTGGTAAAGCCACA
1 AGAACAGATAATGTGACAGAGCCACCAGATACAAATAATATTGGCAAAGCCACA
* * *
60596723 AGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAAT-TGTGGCATAGCCAC
1 AGAACAGATA-ATGTGACAGAGCCACCAGATACAAATAATAT-TGGCAAAGCCAC
60596776 CACGACGCTT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
53 1 0.02
54 27 0.59
55 18 0.39
ACGTcount: A:0.41, C:0.19, G:0.21, T:0.19
Consensus pattern (54 bp):
AGAACAGATAATGTGACAGAGCCACCAGATACAAATAATATTGGCAAAGCCACA
Found at i:60597220 original size:8 final size:8
Alignment explanation
Indices: 60597194--60597223 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
60597184 CAAGATACCA
60597194 GCTTTTCG
1 GCTTTTCG
*
60597202 GCATTTCG
1 GCTTTTCG
60597210 GCTTTTCG
1 GCTTTTCG
60597218 GCTTTT
1 GCTTTT
60597224 GCCGATCTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.23, G:0.23, T:0.50
Consensus pattern (8 bp):
GCTTTTCG
Found at i:60599635 original size:27 final size:28
Alignment explanation
Indices: 60599588--60599653 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 28
60599578 ATAATGTGAT
* *
60599588 AGAGTCACCAGATACAGATAATCT-TGGC
1 AGAGCCACCAGATACAAATAAT-TGTGGC
60599616 AGAGCCACCAGAT-CAAATAATTGTGGC
1 AGAGCCACCAGATACAAATAATTGTGGC
*
60599643 ATAGCCACCAG
1 AGAGCCACCAG
60599654 GACACTTCCT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 1 0.03
27 21 0.62
28 12 0.35
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.18
Consensus pattern (28 bp):
AGAGCCACCAGATACAAATAATTGTGGC
Found at i:60607345 original size:11 final size:12
Alignment explanation
Indices: 60607329--60607360 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
60607319 ATTCTTTCTC
60607329 TTTCTTTT-TTT
1 TTTCTTTTCTTT
60607340 TTTCTTTTCTTT
1 TTTCTTTTCTTT
60607352 TTT-TTTTCT
1 TTTCTTTTCT
60607361 CTCTTCATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 14 0.70
12 6 0.30
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (12 bp):
TTTCTTTTCTTT
Found at i:60607353 original size:17 final size:17
Alignment explanation
Indices: 60607323--60607362 Score: 73
Period size: 16 Copynumber: 2.4 Consensus size: 17
60607313 TTGACCATTC
60607323 TTTCTCTTTCTTTTTTT
1 TTTCTCTTTCTTTTTTT
60607340 TTTCT-TTTCTTTTTTT
1 TTTCTCTTTCTTTTTTT
60607356 TTTCTCT
1 TTTCTCT
60607363 CTTCATCAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTCTCTTTCTTTTTTT
Found at i:60608700 original size:27 final size:27
Alignment explanation
Indices: 60608616--60608703 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
60608606 CTATGTCAGA
*
60608616 ATTATCTG-ATCTGGTGGCTCTACCAC
1 ATTATCTGTATCTGGTGGCTCTGCCAC
*
60608642 ATATATCTGT-TCTGGTGGCTTTGCCAC
1 AT-TATCTGTATCTGGTGGCTCTGCCAC
* *
60608669 GATTATCTGTATCTGGTGACTCTGTCAC
1 -ATTATCTGTATCTGGTGGCTCTGCCAC
60608697 ATTATCT
1 ATTATCT
60608704 ATTCTGGCAG
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
26 2 0.04
27 35 0.66
28 16 0.30
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.40
Consensus pattern (27 bp):
ATTATCTGTATCTGGTGGCTCTGCCAC
Found at i:60611687 original size:24 final size:25
Alignment explanation
Indices: 60611654--60611715 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
60611644 TGAAAAACAT
*
60611654 TACATGAATATATATTGAAAA-TAGA
1 TACAT-AATATATATTGAAAAGCAGA
* * *
60611679 TATATAATA-ATATTTAAAAGCATA
1 TACATAATATATATTGAAAAGCAGA
60611703 TACATAATATATA
1 TACATAATATATA
60611716 CATAATATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
23 9 0.30
24 14 0.47
25 7 0.23
ACGTcount: A:0.53, C:0.05, G:0.06, T:0.35
Consensus pattern (25 bp):
TACATAATATATATTGAAAAGCAGA
Found at i:60611725 original size:9 final size:11
Alignment explanation
Indices: 60611700--60611724 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
60611690 ATTTAAAAGC
60611700 ATATACATAAT
1 ATATACATAAT
60611711 ATATACATAAT
1 ATATACATAAT
60611722 ATA
1 ATA
60611725 CGAAACAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (11 bp):
ATATACATAAT
Found at i:60611968 original size:10 final size:10
Alignment explanation
Indices: 60611948--60611976 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
60611938 TATCAAAAAC
60611948 TAATA-ATAA
1 TAATATATAA
60611957 TAATATATAA
1 TAATATATAA
60611967 TAATATATAA
1 TAATATATAA
60611977 ATGTATACGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 5 0.26
10 14 0.74
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
TAATATATAA
Found at i:60613936 original size:43 final size:43
Alignment explanation
Indices: 60613831--60614074 Score: 179
Period size: 43 Copynumber: 5.6 Consensus size: 43
60613821 GTCTTTGATC
* * * * * * * *
60613831 TGTTTCCCTACTACTTAGGGGGTTAAGATTTGGAAATCTTCAGCC
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAA--TTCGGCT
*
60613876 TGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAGTTCGGCT
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATTCGGCT
* * * * * ** *
60613919 TGTTACACTATTGCTTAGGGGGTTAAAGCTCAT-CACCTTC-GAT
1 TGTTACCCTACTGCTTA-GGGGTTTAAGGTC-TGTAAATTCGGCT
* * * * *
60613962 CTGTTTCCCTACTGTTTATGGGG-TTAAGATCTGTAAATTCAGCC
1 -TGTTACCCTACTGCTTA-GGGGTTTAAGGTCTGTAAATTCGGCT
* * *
60614006 TATTACCTTATTGCTTAGGGGTTTAAGGTCTGTAAATTCGGCT
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATTCGGCT
*
60614049 TGTTACCCTACTGCTTAGGGGGTTAA
1 TGTTACCCTACTGCTTAGGGGTTTAA
60614075 AGCTCATCAC
Statistics
Matches: 152, Mismatches: 41, Indels: 14
0.73 0.20 0.07
Matches are distributed among these distances:
42 5 0.03
43 84 0.55
44 33 0.22
45 30 0.20
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.37
Consensus pattern (43 bp):
TGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATTCGGCT
Found at i:60614046 original size:130 final size:130
Alignment explanation
Indices: 60613827--60614132 Score: 477
Period size: 130 Copynumber: 2.3 Consensus size: 130
60613817 TTTCGTCTTT
* * * *
60613827 GATCTGTTTCCCTACTACTTAGGGGGTTAAGATTTGGAAATCTTCAGCCTGTTACCCTACTGCTT
1 GATCTGTTTCCCTACTATTTAGGGGGTTAAGATCTGTAAA--TTCAGCCTATTACCCTACTGCTT
* *
60613892 AGGGGTTTAAGGTCTGTAAGTTCGGCTTGTTACACTATTGCTTAGGGGGTTAAAGCTCATCACCT
64 AGGGGTTTAAGGTCTGTAAATTCGGCTTGTTACACTACTGCTTAGGGGGTTAAAGCTCATCACCT
60613957 TC
129 TC
* * * *
60613959 GATCTGTTTCCCTACTGTTTATGGGGTTAAGATCTGTAAATTCAGCCTATTACCTTATTGCTTAG
1 GATCTGTTTCCCTACTATTTAGGGGGTTAAGATCTGTAAATTCAGCCTATTACCCTACTGCTTAG
*
60614024 GGGTTTAAGGTCTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATCACCTTC
66 GGGTTTAAGGTCTGTAAATTCGGCTTGTTACACTACTGCTTAGGGGGTTAAAGCTCATCACCTTC
* *
60614089 GATATGTTTCCCTACTATTTAGGGGGTTAATATCTGTAAATTCA
1 GATCTGTTTCCCTACTATTTAGGGGGTTAAGATCTGTAAATTCA
60614133 CCGATCTAGG
Statistics
Matches: 159, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
130 124 0.78
132 35 0.22
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (130 bp):
GATCTGTTTCCCTACTATTTAGGGGGTTAAGATCTGTAAATTCAGCCTATTACCCTACTGCTTAG
GGGTTTAAGGTCTGTAAATTCGGCTTGTTACACTACTGCTTAGGGGGTTAAAGCTCATCACCTTC
Found at i:60615399 original size:15 final size:14
Alignment explanation
Indices: 60615376--60615414 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
60615366 GCCTCTCCTC
60615376 TTTTCTTTTCTTTCT
1 TTTTCTTTTCTTT-T
*
60615391 TTTTTTTTTCTTTT
1 TTTTCTTTTCTTTT
60615405 TTTTCCTTTT
1 TTTT-CTTTT
60615415 TTTAGGCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTCTTTTCTTTT
Found at i:60615401 original size:20 final size:21
Alignment explanation
Indices: 60615376--60615417 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
60615366 GCCTCTCCTC
60615376 TTTTCTTTTCTTT-CTTTTTT
1 TTTTCTTTTCTTTCCTTTTTT
*
60615396 TTTTCTTTTTTTTCCTTTTTT
1 TTTTCTTTTCTTTCCTTTTTT
60615417 T
1 T
60615418 AGGCAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (21 bp):
TTTTCTTTTCTTTCCTTTTTT
Found at i:60623677 original size:16 final size:16
Alignment explanation
Indices: 60623656--60623691 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
60623646 CATTTTTATA
*
60623656 TTTATTTTTTGGTTCT
1 TTTATTTTTTAGTTCT
*
60623672 TTTATTTTTTATTTCT
1 TTTATTTTTTAGTTCT
60623688 TTTA
1 TTTA
60623692 AAAATGTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.11, C:0.06, G:0.06, T:0.78
Consensus pattern (16 bp):
TTTATTTTTTAGTTCT
Found at i:60624124 original size:53 final size:53
Alignment explanation
Indices: 60624049--60624161 Score: 154
Period size: 53 Copynumber: 2.1 Consensus size: 53
60624039 AATACTAAAA
* * ** * *
60624049 AATTAAATGATTTTGTTGAAGACTGACAAAATTGTGTCTTACAAATAATACAT
1 AATTAAATGATTTTGCTCAAGACCAACAAAATTCTGTCTTACAAATAAAACAT
* *
60624102 AATTAAATGATTTTGCTCAAGACCAACAATATTCTTTCTTACAAATAAAACAT
1 AATTAAATGATTTTGCTCAAGACCAACAAAATTCTGTCTTACAAATAAAACAT
60624155 AATTAAA
1 AATTAAA
60624162 CTATCGAAAC
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (53 bp):
AATTAAATGATTTTGCTCAAGACCAACAAAATTCTGTCTTACAAATAAAACAT
Found at i:60626435 original size:21 final size:21
Alignment explanation
Indices: 60626411--60626457 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
60626401 CGGGGAGACT
60626411 ACTCAACCC-ACCAACCATTAC
1 ACTCAACCCGACCAACC-TTAC
* *
60626432 ACTCCACCCGTACCAGCCTTAC
1 ACTCAACCCG-ACCAACCTTAC
60626454 ACTC
1 ACTC
60626458 CATGTGGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 8 0.36
22 8 0.36
23 6 0.27
ACGTcount: A:0.30, C:0.49, G:0.04, T:0.17
Consensus pattern (21 bp):
ACTCAACCCGACCAACCTTAC
Found at i:60628225 original size:26 final size:26
Alignment explanation
Indices: 60628190--60628297 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
60628180 TGAAATGCCC
* *
60628190 ATCATAGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
60628216 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
60628242 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
60628268 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
60628294 ATCA
1 ATCA
60628298 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:60629948 original size:3 final size:3
Alignment explanation
Indices: 60629942--60630006 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
60629932 TTGCCATCTC
60629942 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
60629990 TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TA
60630007 CGTATTAGTA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:60630486 original size:22 final size:22
Alignment explanation
Indices: 60630458--60630500 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
60630448 TTTTATATAT
60630458 ATATTATCATGT-ATATATTTTG
1 ATATTATCA-GTAATATATTTTG
*
60630480 ATATTATTAGTAATATATTTT
1 ATATTATCAGTAATATATTTT
60630501 TTATACATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (22 bp):
ATATTATCAGTAATATATTTTG
Found at i:60630573 original size:14 final size:14
Alignment explanation
Indices: 60630556--60630587 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
60630546 TTTTATAATA
*
60630556 TTTCATGTATATAT
1 TTTCATGCATATAT
60630570 TTTCATGCATATAT
1 TTTCATGCATATAT
60630584 TTTC
1 TTTC
60630588 TTTTACATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.25, C:0.12, G:0.06, T:0.56
Consensus pattern (14 bp):
TTTCATGCATATAT
Found at i:60642316 original size:6 final size:7
Alignment explanation
Indices: 60642291--60642325 Score: 61
Period size: 7 Copynumber: 4.9 Consensus size: 7
60642281 GCATCTTAAA
60642291 AAAAAGAG
1 AAAAA-AG
60642299 AAAAAAG
1 AAAAAAG
60642306 AAAAAAG
1 AAAAAAG
60642313 AAAAAAG
1 AAAAAAG
60642320 AAAAAA
1 AAAAAA
60642326 AAGGGGATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 22 0.81
8 5 0.19
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:60645382 original size:22 final size:22
Alignment explanation
Indices: 60645354--60645476 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
60645344 ACATGCATAT
60645354 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
60645376 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
*
60645400 TATGTGATAAGGCCGAATGGCCT
1 -ATGTGATAAGGCCGAATGGCCA
* * *
60645423 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
60645447 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
60645470 ATGTGAT
1 ATGTGAT
60645477 GAACGTGAGC
Statistics
Matches: 73, Mismatches: 14, Indels: 28
0.63 0.12 0.24
Matches are distributed among these distances:
22 23 0.32
23 17 0.23
24 17 0.23
25 16 0.22
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:60645525 original size:25 final size:25
Alignment explanation
Indices: 60645450--60645525 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
60645440 ATGCATATAT
60645450 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
60645475 ATGA-ACGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
60645497 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
60645522 GTGA
1 GTGA
60645526 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.14, G:0.34, T:0.22
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:60645569 original size:47 final size:47
Alignment explanation
Indices: 60645329--60645561 Score: 385
Period size: 47 Copynumber: 5.0 Consensus size: 47
60645319 TTAGGATTTT
60645329 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
60645376 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
60645423 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
60645470 ATGTGATGAACGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
60645517 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGGATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
60645562 TAGTGTGGAA
Statistics
Matches: 173, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 173 1.00
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:60645869 original size:37 final size:37
Alignment explanation
Indices: 60645724--60645868 Score: 218
Period size: 37 Copynumber: 3.9 Consensus size: 37
60645714 GGAAATATAT
* *
60645724 TCCGGGTGAGACCCGATGACTACGTGTGGAGATCATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
60645761 TCCGGGTAAGACCCGATGACTATGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
60645798 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
60645835 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
60645869 TCGTCTGAGC
Statistics
Matches: 97, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:60647389 original size:88 final size:85
Alignment explanation
Indices: 60647204--60647852 Score: 614
Period size: 88 Copynumber: 7.4 Consensus size: 85
60647194 CTGTTCTCAG
* * * * * **
60647204 AAATCAACTCATATTGCTAGAAGTGAGTTGAGCCCTCGGGTCACATGCCGAGGTGTTTTCAAATT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAG-CCTCAGG--ACACGCTGAGGTAATTTC-AATT
* * * *
60647269 CCATTTTTAATTTCTACTTTTC-C
62 TCTTTTTTAATTTATACTTTTCAA
* * * *
60647292 AAATCAACTCATGTTACGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT-
60647357 TTTTTCCAATTTATACTTTTCAA
65 TTTTT--AATTTATACTTTTCAA
* *
60647380 AAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTT
* *
60647445 TTTT--TTCAT-GTTTTCAA
66 TTTTAATTTATACTTTTCAA
*
60647462 AAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT-
* * **
60647527 TCTTTAATTTCTGTTTTTCAAAA
65 TTTTTAATTTATACTTTTC--AA
* * *
60647550 AAACCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTT-TT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTT
* **
60647614 GTCTTTAATTTTTGTTTTTCCAAAA
66 -T-TTTAATTTATACTTTT-C--AA
* * * *
60647639 AAATCAGCTCATATTGCGAGAGGTGGGTTGAGCCTTAGGACACGCTGAGGTAATTTCAATTTTTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA--TTTC
* *
60647704 TGTTTTTCAATTTTTACCTTTCAAAAAA
64 T-TTTTT-AATTTATACTTTTC----AA
*
60647732 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACATC-CTGAGGT-ATTTCCAAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACA-CGCTGAGGTAATTT-CAAT
* * *
60647794 TTCTGTTTTAATTCAT-GTTTTCAA
61 TTCTTTTTTAATTTATACTTTTCAA
*
60647818 AAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
60647853 TTTAATTTCT
Statistics
Matches: 485, Mismatches: 51, Indels: 52
0.82 0.09 0.09
Matches are distributed among these distances:
82 69 0.14
83 7 0.01
84 5 0.01
85 23 0.05
86 42 0.09
87 24 0.05
88 163 0.34
89 58 0.12
90 4 0.01
91 12 0.02
92 18 0.04
93 42 0.09
94 4 0.01
95 13 0.03
96 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.36
Consensus pattern (85 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTT
TTTTAATTTATACTTTTCAA
Found at i:60647498 original size:170 final size:170
Alignment explanation
Indices: 60647292--60647852 Score: 664
Period size: 170 Copynumber: 3.2 Consensus size: 170
60647282 CTACTTTTCC
* * * *
60647292 AAATCAACTCATGTTACGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTA
60647357 TTTTTCCAATTTATACTTTTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
66 TTTTT-CAATTTATACTTTTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
60647422 CGCTGAGGTAATTTCAATTTCTGTTTT-TTCATGTTTTCAA
130 CGCTGAGGTAATTTCAATTTCTGTTTTATTCATGTTTTCAA
* *
60647462 AAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTA
* * ** * *
60647527 TCTTT-AATTTCTGTTTTTCAAAAAAACCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGAC
66 TTTTTCAATTTATACTTTTCAAAAATA--AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* * **
60647591 ATGCTGAGGTAATTTCAATTTTTGTCTTTAATTTTTGTTTTTCCAAAA
129 ACGCTGAGGTAATTTCAATTTCTGT-TTT-ATTCATG-TTTT-C--AA
* * * *
60647639 AAATCAGCTCATATTGCGAGAGGTGGGTTGAGCCTTAGGACACGCTGAGGTAATTTCAATTTTTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA--TTTC
* * * * *
60647704 TGTTTTTCAATTTTTACCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-T
64 TATTTTTCAATTTATACTTTTC----AAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
60647768 GGCTCACATC-CTGAGGT-ATTTCCAATTTCTGTTTTAATTCATGTTTTCAA
125 GG---ACA-CGCTGAGGTAATTT-CAATTTCTGTTTT-ATTCATGTTTTCAA
*
60647818 AAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
60647853 TTTAATTTCT
Statistics
Matches: 333, Mismatches: 37, Indels: 33
0.83 0.09 0.08
Matches are distributed among these distances:
168 17 0.05
170 121 0.36
171 3 0.01
173 4 0.01
174 4 0.01
175 1 0.00
177 57 0.17
179 43 0.13
180 10 0.03
181 3 0.01
182 33 0.10
183 13 0.04
184 24 0.07
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (170 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTA
TTTTTCAATTTATACTTTTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTAATTTCAATTTCTGTTTTATTCATGTTTTCAA
Found at i:60647962 original size:14 final size:13
Alignment explanation
Indices: 60647932--60647963 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
60647922 TGCTGAGCTA
*
60647932 TTTTTAATTTCAG
1 TTTTTAATGTCAG
60647945 TTTTTAATGTCAG
1 TTTTTAATGTCAG
60647958 TTTTTA
1 TTTTTA
60647964 TTTTTCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.22, C:0.06, G:0.09, T:0.62
Consensus pattern (13 bp):
TTTTTAATGTCAG
Found at i:60649760 original size:15 final size:15
Alignment explanation
Indices: 60649740--60649773 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
60649730 ATTAATTTTG
*
60649740 ATATTTTCTATTATT
1 ATATTTACTATTATT
60649755 ATATTTACTATTATT
1 ATATTTACTATTATT
60649770 -TATT
1 ATATT
60649774 GCCATCTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (15 bp):
ATATTTACTATTATT
Found at i:60649788 original size:3 final size:3
Alignment explanation
Indices: 60649782--60649819 Score: 67
Period size: 3 Copynumber: 12.3 Consensus size: 3
60649772 TTGCCATCTC
60649782 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT T
60649820 TATATTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:60650346 original size:14 final size:14
Alignment explanation
Indices: 60650329--60650360 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
60650319 ATTTATAATA
*
60650329 TTTCATGTATATAT
1 TTTCATGCATATAT
60650343 TTTCATGCATATAT
1 TTTCATGCATATAT
60650357 TTTC
1 TTTC
60650361 TTTTACATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.25, C:0.12, G:0.06, T:0.56
Consensus pattern (14 bp):
TTTCATGCATATAT
Found at i:60652073 original size:20 final size:19
Alignment explanation
Indices: 60652034--60652078 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
60652024 AAAATGGTTA
*
60652034 ATATATAAAAATATATTAT
1 ATATATAAAAATATAATAT
* *
60652053 ATGATATAATAATTTAATAT
1 AT-ATATAAAAATATAATAT
60652073 ATATAT
1 ATATAT
60652079 TTATAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (19 bp):
ATATATAAAAATATAATAT
Found at i:60652279 original size:20 final size:19
Alignment explanation
Indices: 60652219--60652291 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
60652209 TACATAATAA
*
60652219 ATAATTAATAATAAAATGAT
1 ATAA-TAATAATAAAAAGAT
* *
60652239 ATAGTAA-AATAAAAATAAT
1 ATAATAATAATAAAAA-GAT
60652258 ATAATGAATAATAAAAAGAT
1 ATAAT-AATAATAAAAAGAT
60652278 ATAATATATAATAA
1 ATAATA-ATAATAA
60652292 TTTTTACACA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
18 7 0.16
19 10 0.23
20 19 0.43
21 8 0.18
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.30
Consensus pattern (19 bp):
ATAATAATAATAAAAAGAT
Found at i:60655324 original size:27 final size:27
Alignment explanation
Indices: 60655270--60655325 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
60655260 GTTTTGGACC
* **
60655270 TAATATAAAGACAATTAAAATATTATA
1 TAATATAAAAACAATTAAAATACAATA
* *
60655297 TAATATAAAAATAATTTAAATACAATA
1 TAATATAAAAACAATTAAAATACAATA
60655324 TA
1 TA
60655326 GATCTATGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.34
Consensus pattern (27 bp):
TAATATAAAAACAATTAAAATACAATA
Found at i:60657597 original size:37 final size:37
Alignment explanation
Indices: 60657556--60657629 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
60657546 AGGGGTTAAT
60657556 TAAAATGGTTAAACAAAAAATGATGGCTTAATTGCTA
1 TAAAATGGTTAAACAAAAAATGATGGCTTAATTGCTA
60657593 TAAAATGGTTAAACAAAAAATGATGGCTTAATTGCTA
1 TAAAATGGTTAAACAAAAAATGATGGCTTAATTGCTA
60657630 AGTGCTAGAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.46, C:0.08, G:0.16, T:0.30
Consensus pattern (37 bp):
TAAAATGGTTAAACAAAAAATGATGGCTTAATTGCTA
Found at i:60671248 original size:19 final size:20
Alignment explanation
Indices: 60671208--60671249 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
60671198 GATATATAAT
*
60671208 ATATATAAAAATAATAAGTA
1 ATATATAAAAATAATAACTA
60671228 ATATA-AAAAATAA-AACCTA
1 ATATATAAAAATAATAA-CTA
60671247 ATA
1 ATA
60671250 AATGCTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 2 0.10
19 13 0.65
20 5 0.25
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (20 bp):
ATATATAAAAATAATAACTA
Found at i:60671369 original size:24 final size:23
Alignment explanation
Indices: 60671332--60671377 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
60671322 ATAAATGGTA
60671332 TTTTAGTAATAATATAAGTATATT
1 TTTTAGTAATAATA-AAGTATATT
*
60671356 TTTTA-TAATAAATAAATTATAT
1 TTTTAGTAAT-AATAAAGTATAT
60671378 AAAGAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (23 bp):
TTTTAGTAATAATAAAGTATATT
Found at i:60673179 original size:84 final size:84
Alignment explanation
Indices: 60673061--60673305 Score: 399
Period size: 84 Copynumber: 2.9 Consensus size: 84
60673051 GATCTGCTAC
* *
60673061 ATTTGAGAAC-TTTTGAGAGTCAAATCTGCTATGTCCTCGATTT-TTCCCTTGTAAGCACATGGA
1 ATTTGAGAACATTTTGAGAGTCATATCTGCAATGTCCTCGATTTGTT-CCTTGTAAGCACATGGA
60673124 TGCCAAACCATCTTGAGTCT
65 TGCCAAACCATCTTGAGTCT
* *
60673144 ATTTGAGAACATTTTGAGAGTCATATTTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
1 ATTTGAGAACATTTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACATGGAT
60673209 GCCAAACCATCTTGAGTCT
66 GCCAAACCATCTTGAGTCT
*
60673228 GTTTGAGAACA-TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAT-GA
1 ATTTGAGAACATTTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAC-ATGGA
60673291 TGCCAAACCATCTTG
65 TGCCAAACCATCTTG
60673306 GATCTGCTTC
Statistics
Matches: 152, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
83 73 0.48
84 77 0.51
85 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (84 bp):
ATTTGAGAACATTTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACATGGAT
GCCAAACCATCTTGAGTCT
Found at i:60673287 original size:83 final size:83
Alignment explanation
Indices: 60673061--60673305 Score: 402
Period size: 83 Copynumber: 2.9 Consensus size: 83
60673051 GATCTGCTAC
* * * *
60673061 ATTTGAGAACTTTTGAGAGTCAAATCTGCTATGTCCTCGATTT-TTCCCTTGTAAGCACATGGAT
1 ATTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTT-CCTTGTAAGCACAAGGAT
60673125 GCCAAACCATCTTGAGTCT
65 GCCAAACCATCTTGAGTCT
*
60673144 ATTTGAGAACATTTTGAGAGTCATATTTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
1 ATTTGAGAACA-TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
60673209 GCCAAACCATCTTGAGTCT
65 GCCAAACCATCTTGAGTCT
* *
60673228 GTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAATGATG
1 ATTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATG
60673293 CCAAACCATCTTG
66 CCAAACCATCTTG
60673306 GATCTGCTTC
Statistics
Matches: 152, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
83 75 0.49
84 75 0.49
85 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (83 bp):
ATTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATG
CCAAACCATCTTGAGTCT
Found at i:60673442 original size:119 final size:119
Alignment explanation
Indices: 60673229--60673461 Score: 317
Period size: 119 Copynumber: 2.0 Consensus size: 119
60673219 CTTGAGTCTG
* * * *
60673229 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAATGATGC
1 TTTGAGAACATCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAATGATAC
**
60673294 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGT-TAGATCTGCTATA
66 CAAACCATCTTGGATCTGCTTCAACATAAACATCTGAA-GTCTAGATCTGCTATA
* * *
60673348 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAA-GAATA
1 TTTGAGAACATCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAATG-ATA
** **
60673412 CCAAATTATCTTGGATCTGCTTCAACATAAATGTCTGAAGTCTAGATCTG
65 CCAAACCATCTTGGATCTGCTTCAACATAAACATCTGAAGTCTAGATCTG
60673462 TTGTCTTCAA
Statistics
Matches: 99, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
118 3 0.03
119 96 0.97
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (119 bp):
TTTGAGAACATCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAATGATAC
CAAACCATCTTGGATCTGCTTCAACATAAACATCTGAAGTCTAGATCTGCTATA
Found at i:60685587 original size:24 final size:23
Alignment explanation
Indices: 60685550--60685595 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
60685540 ATAAATGGTA
60685550 TTTTAGTAATAATATAAGTATATT
1 TTTTAGTAATAATA-AAGTATATT
*
60685574 TTTTA-TAATAAATAAATTATAT
1 TTTTAGTAAT-AATAAAGTATAT
60685596 AAAGAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (23 bp):
TTTTAGTAATAATAAAGTATATT
Found at i:60687023 original size:20 final size:21
Alignment explanation
Indices: 60686967--60687027 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
60686957 ACATGCAACG
*
60686967 TGATAAATATAAATTAAAAAAA
1 TGATAAAT-TAATTTAAAAAAA
* *
60686989 TGA-AAATAAACTTTAAAAATA
1 TGATAAATTAA-TTTAAAAAAA
60687010 T-ATAAATTAATTTAAAAA
1 TGATAAATTAATTTAAAAA
60687028 GTAAGTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
20 11 0.33
21 19 0.58
22 3 0.09
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (21 bp):
TGATAAATTAATTTAAAAAAA
Found at i:60687168 original size:16 final size:16
Alignment explanation
Indices: 60687146--60687192 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
60687136 TGAAAAATAT
*
60687146 AAAAAATATAAATTTA
1 AAAAAATATAAAATTA
*
60687162 TAAAAATATATACAATTA
1 -AAAAA-ATATAAAATTA
60687180 AAAAAATATAAAA
1 AAAAAATATAAAA
60687193 AGGCCTGTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 7 0.27
17 10 0.38
18 9 0.35
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAAAATATAAAATTA
Found at i:60687172 original size:18 final size:18
Alignment explanation
Indices: 60687143--60687189 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
60687133 ATTTGAAAAA
60687143 TATAAAAA-ATATA-AATT
1 TATAAAAATATATACAA-T
60687160 TATAAAAATATATACAAT
1 TATAAAAATATATACAAT
*
60687178 TAAAAAAATATA
1 TATAAAAATATA
60687190 AAAAGGCCTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 8 0.30
18 17 0.63
19 2 0.07
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (18 bp):
TATAAAAATATATACAAT
Found at i:60693252 original size:19 final size:19
Alignment explanation
Indices: 60693228--60693306 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
60693218 AATCTTTAAG
60693228 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
60693247 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
60693266 GATAT--AATCTTAGATAT
1 GATATGCAATCTTAGATAT
60693283 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
60693304 GAT
1 GAT
60693307 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:60693258 original size:36 final size:34
Alignment explanation
Indices: 60693218--60693309 Score: 116
Period size: 36 Copynumber: 2.6 Consensus size: 34
60693208 ATGGAAATAT
*
60693218 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTGAA-GATATG-AATCTTAGATATGATATGC
60693254 AATCTTAGATATGATAT-AATCTTAGATATGATATGC
1 AATCTT-GA-A-GATATGAATCTTAGATATGATATGC
60693290 AATCTTGAAGATATG-ATCTT
1 AATCTTGAAGATATGAATCTT
60693310 GTAATCTTGG
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
33 10 0.20
34 1 0.02
35 2 0.04
36 31 0.61
37 1 0.02
38 6 0.12
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (34 bp):
AATCTTGAAGATATGAATCTTAGATATGATATGC
Found at i:60693318 original size:22 final size:20
Alignment explanation
Indices: 60693228--60693323 Score: 94
Period size: 19 Copynumber: 4.9 Consensus size: 20
60693218 AATCTTTAAG
*
60693228 GATATGCAATCTT-AGATAT
1 GATATGTAATCTTGAGATAT
*
60693247 GATATGCAATCTT-AGATAT
1 GATATGTAATCTTGAGATAT
60693266 GATA--TAATCTT-AGATAT
1 GATATGTAATCTTGAGATAT
*
60693283 GATATGCAATCTTGAAGATAT
1 GATATGTAATCTTG-AGATAT
*
60693304 GATCTTGTAATCTTGGAGAT
1 GAT-ATGTAATCTT-GAGAT
60693324 TTAATTTGTA
Statistics
Matches: 67, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
17 16 0.24
19 29 0.43
21 9 0.13
22 12 0.18
23 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (20 bp):
GATATGTAATCTTGAGATAT
Found at i:60697781 original size:47 final size:47
Alignment explanation
Indices: 60697702--60698014 Score: 509
Period size: 47 Copynumber: 6.6 Consensus size: 47
60697692 TATTTGAATA
60697702 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
60697751 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60697798 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
60697847 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60697894 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
60697941 AATGTGAAAGCGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
60697988 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
60698015 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 12, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
47 191 0.76
49 59 0.24
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:60697814 original size:96 final size:96
Alignment explanation
Indices: 60697702--60698014 Score: 526
Period size: 96 Copynumber: 3.3 Consensus size: 96
60697692 TATTTGAATA
60697702 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
60697767 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
60697798 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
60697863 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
60697894 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * * * *
60697957 TATGTGACAGGGCCGAGTGGCCAACGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
60697988 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
60698015 TCCCGAAGGG
Statistics
Matches: 207, Mismatches: 8, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
94 96 0.46
95 1 0.00
96 110 0.53
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:60697877 original size:143 final size:141
Alignment explanation
Indices: 60697702--60698014 Score: 509
Period size: 143 Copynumber: 2.2 Consensus size: 141
60697692 TATTTGAATA
60697702 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
60697767 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCG--TATATATGTGACAAGGCCGA
* *
60697832 ATGGCCGATGTGATG
127 ATGGCCAACGTGATG
60697847 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
60697912 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTGACAGGGCCGAGTGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTGACAAGGCCGAATGG
60697977 CCAACGTGATG
131 CCAACGTGATG
* *
60697988 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
60698015 TCCCGAAGGG
Statistics
Matches: 159, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
141 54 0.34
143 93 0.58
145 12 0.08
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTGACAAGGCCGAATGG
CCAACGTGATG
Found at i:60703180 original size:11 final size:10
Alignment explanation
Indices: 60703161--60703229 Score: 68
Period size: 10 Copynumber: 6.5 Consensus size: 10
60703151 ACTTCTATTT
60703161 AAAAAAAAAG
1 AAAAAAAAAG
60703171 AAAAAGAAAAG
1 AAAAA-AAAAG
*
60703182 AAAAAGAGAAAA
1 AAAAA-A-AAAG
60703194 AAATATAAAAAG
1 AAA-A-AAAAAG
*
60703206 AAAAAAAGA-
1 AAAAAAAAAG
60703215 AAAAAAAAAG
1 AAAAAAAAAG
60703225 AAAAA
1 AAAAA
60703230 TGGAGAGGCC
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
9 8 0.16
10 14 0.28
11 13 0.26
12 12 0.24
13 2 0.04
14 1 0.02
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.03
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:60703229 original size:8 final size:8
Alignment explanation
Indices: 60703163--60703220 Score: 62
Period size: 8 Copynumber: 6.9 Consensus size: 8
60703153 TTCTATTTAA
60703163 AAAAAAAG
1 AAAAAAAG
60703171 AAAAAGAAAAG
1 --AAA-AAAAG
*
60703182 AAAAAGAG
1 AAAAAAAG
*
60703190 AAAAAAAT
1 AAAAAAAG
*
60703198 ATAAAAAG
1 AAAAAAAG
60703206 AAAAAAAG
1 AAAAAAAG
60703214 AAAAAAA
1 AAAAAAA
60703221 AAAGAAAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 30 0.73
9 3 0.07
10 3 0.07
11 5 0.12
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.03
Consensus pattern (8 bp):
AAAAAAAG
Found at i:60704532 original size:205 final size:205
Alignment explanation
Indices: 60704172--60705334 Score: 1879
Period size: 205 Copynumber: 5.7 Consensus size: 205
60704162 GTAGATCTGG
* *
60704172 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATGGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* * *
60704237 GATTTGGTTTTCACGTGCTTATGCTGAAGCAAATCTAAGATGATTTAGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
*
60704302 AGAACAAATCGAAGTTTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTC
130 AGAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTC
60704367 AGATGTTTATA
195 AGATGTTTATA
* * *
60704378 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTTTGCTTACAAGGAACAAATCGCAGACATAGCTA
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * * * *
60704443 ATTTAGCTTTCACGTGTTTACGCTAAAACAAATCAAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* ** *
60704508 GAACAAATCGAAGCCTGGCATCTCCATTTCGATAGAGAGCAGATACATAGCAGATCTAACCTTCG
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
60704573 GATGTTTATA
196 GATGTTTATA
* *
60704583 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATGGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * *
60704648 ATTTGGTTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTAGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
60704713 GAACAAATCAAAGTTTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
60704778 GATGTTTATA
196 GATGTTTATA
* *
60704788 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTACTTACAAGGAACAAATCAAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
60704853 ATTTGACTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
60704918 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
60704983 GATGTTTATA
196 GATGTTTATA
* *
60704993 CTGAAGCAGATCTAAGATGGTTTGGCATCCTTGTTCTTACAAGGAACAAATCGAAG-CATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * *
60705057 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCAAA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * * *
60705122 GAAAAAATCAAAGTCTGGCATCTCCATTTCAATGGAGAGCAGATACATAGCAGATCAAACCTTCA
131 GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
60705187 GATG-----A
196 GATGTTTATA
*
60705192 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGGCATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * * *
60705257 ATTTGGTTTTCGCGTGCTTATGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
60705322 GAACAAATCGAAG
131 GAACAAATCGAAG
60705335 AAACAGATTT
Statistics
Matches: 888, Mismatches: 68, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
199 55 0.06
200 77 0.09
204 134 0.15
205 615 0.69
206 7 0.01
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (205 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCA
GATGTTTATA
Found at i:60705577 original size:261 final size:261
Alignment explanation
Indices: 60705191--60705678 Score: 701
Period size: 261 Copynumber: 1.9 Consensus size: 261
60705181 CCTTCAGATG
* * * *
60705191 ACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGGCATAGCT
1 ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACACAGCA
* * ** * * * *
60705256 GATTTGGTTTTCGCGTGCTTATGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAG
66 GATTTGGCTTTCACGTGCTTACACTAAAGAAAATCTAAGATGATTTGGCATCTATGTATTGTCAG
* *
60705321 AGAACAAATCGAAGAAACAGATTTGGCGTCTCTGTATTCGGCAGAGAGCAGATCAAAGATATCAA
131 AAAACAAATCGAAGAAACAGATTTGGCGTCTCTGTATTCGACAGAGAGCAGATCAAAGATATCAA
60705386 CAGGACAGTCATAAGTTTACAA-GAAGCAGATTAAAGACATAGCAGATCTGACCTTCAGATGATT
196 CAGGACAGTCATAAGTTTACAATG-AGCAGATTAAAGACATAGCAGATCTGACCTTCAGATGATT
60705450 TT
260 TT
* *
60705452 ACTGAAGCAGATCTAAGATGATTTGGCATCCTTGTG-TTCACAAGGAGCAAATCGAAGACACAGC
1 ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTT-ACAAGGAACAAATCGAAGACACAGC
*
60705516 AGATTTGGCTTTCACGTGTTTACACTAAAGAAAATCTAAGATGATTTGGCATCTATGTATTGTCA
65 AGATTTGGCTTTCACGTGCTTACACTAAAGAAAATCTAAGATGATTTGGCATCTATGTATTGTCA
* * * * * *
60705581 GAAAACAAATCGAAGAAGCAGATTTGGCGTCTTTGTGTTTGACGGAGAGCAGATCGAAGATATCA
130 GAAAACAAATCGAAGAAACAGATTTGGCGTCTCTGTATTCGACAGAGAGCAGATCAAAGATATCA
* * * *
60705646 ACATGACAGTCTTGAGTTTGCAATGAGCAGATT
195 ACAGGACAGTCATAAGTTTACAATGAGCAGATT
60705679 GAGGACCATG
Statistics
Matches: 198, Mismatches: 27, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
260 2 0.01
261 195 0.98
262 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.27
Consensus pattern (261 bp):
ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACACAGCA
GATTTGGCTTTCACGTGCTTACACTAAAGAAAATCTAAGATGATTTGGCATCTATGTATTGTCAG
AAAACAAATCGAAGAAACAGATTTGGCGTCTCTGTATTCGACAGAGAGCAGATCAAAGATATCAA
CAGGACAGTCATAAGTTTACAATGAGCAGATTAAAGACATAGCAGATCTGACCTTCAGATGATTT
T
Found at i:60705987 original size:19 final size:19
Alignment explanation
Indices: 60705963--60706023 Score: 108
Period size: 19 Copynumber: 3.3 Consensus size: 19
60705953 AATCTTTAAG
60705963 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
60705982 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
60706001 GATAT--AATCTTAGATAT
1 GATATGCAATCTTAGATAT
60706018 GATATG
1 GATATG
60706024 ATATGATATG
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.41
19 24 0.59
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:60710172 original size:55 final size:54
Alignment explanation
Indices: 60710083--60710338 Score: 235
Period size: 55 Copynumber: 4.8 Consensus size: 54
60710073 CATTAGGGTT
* **
60710083 CAAGGATACCATGTAAGACCATGCTAAGGTATGGCAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGG
* * ** * *
60710138 CAAGGAAATCATGTAAGACCATGTTAAGACATGGC-ATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGG
* * *
60710193 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGG
1 C-AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGG
* * *
60710246 CAAGGCTACCATGTGAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA--
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGG
* * *
60710296 -AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
60710339 GTACCCGTGT
Statistics
Matches: 168, Mismatches: 26, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
49 38 0.23
52 7 0.04
53 40 0.24
54 12 0.07
55 67 0.40
56 4 0.02
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
CAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGG
Found at i:60710290 original size:108 final size:110
Alignment explanation
Indices: 60710091--60710291 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
60710081 TTCAAGGATA
* * *
60710091 CCATGTAAGACCATGCTAAGGTATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
60710156 CCATGTTAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* ** *
60710201 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTGAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
60710263 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
60710292 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.56
109 7 0.09
110 25 0.31
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:60717841 original size:53 final size:53
Alignment explanation
Indices: 60717666--60717920 Score: 220
Period size: 53 Copynumber: 4.8 Consensus size: 53
60717656 CATTAGGGTT
* **
60717666 CAAGGATACCATGTAAGACCATGCTAAGGTATGGCAATTGGTAAGGTTTC-TAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGG
* * ** *
60717721 CAAGGAAATCATGTAAG-CCATGTTAAGACATGGCATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGG
* * *
60717775 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGG
1 C-AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGG
* * * *
60717828 CAAGGCTACCATGTGAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA--
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGG
* * * *
60717878 -AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
60717921 GTACCCGTGT
Statistics
Matches: 168, Mismatches: 25, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
49 38 0.23
51 3 0.02
52 8 0.05
53 48 0.29
54 29 0.17
55 42 0.25
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGG
Found at i:60717872 original size:108 final size:109
Alignment explanation
Indices: 60717674--60717873 Score: 271
Period size: 108 Copynumber: 1.8 Consensus size: 109
60717664 TTCAAGGATA
* * *
60717674 CCATGTAAGACCATGCTAAGGTATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGC
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGC
* *
60717739 CATGTTAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* ** *
60717783 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTGAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
60717845 ACCATGTCAAGACATGGCAATGGTAAGTT
65 -CCATGTCAAGACATGGCAATGATAAGTT
60717874 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
106 3 0.04
107 19 0.24
108 32 0.41
109 25 0.32
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (109 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:60718136 original size:16 final size:16
Alignment explanation
Indices: 60718115--60718145 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
60718105 AATAATTTGA
60718115 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
60718131 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
60718146 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:60719791 original size:21 final size:18
Alignment explanation
Indices: 60719741--60719786 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
60719731 ATGACTTTTA
60719741 AATAATATTTT--TAAGT
1 AATAATATTTTAATAAGT
60719757 AATAATATTTTAATAAGT
1 AATAATATTTTAATAAGT
60719775 AATAATATTTTA
1 AATAATATTTTA
60719787 TTAATTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 11 0.39
18 17 0.61
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (18 bp):
AATAATATTTTAATAAGT
Found at i:60722406 original size:89 final size:89
Alignment explanation
Indices: 60722255--60722519 Score: 379
Period size: 89 Copynumber: 3.0 Consensus size: 89
60722245 GCACTTTCAT
** * * *
60722255 ATGATGTCATAGTGTCTTTCATCTATAGTCTTACTCATTTATATCATGATGCCATATTATCTTTC
1 ATGATGTCATAGCATCTTTCAACTATAGTCTTACTCATTTTTATCATGATGCCATATCATCTTTC
60722320 AGCTATGGTCTTACTCATTTTATC
66 AGCTATGGTCTTACTCATTTTATC
* *
60722344 ATGATGTCATAGCATCTTTCAGCTATAGTCTTACTCATTTTTATCATGATGTCATATCATCTTTC
1 ATGATGTCATAGCATCTTTCAACTATAGTCTTACTCATTTTTATCATGATGCCATATCATCTTTC
*
60722409 AGCTATGGTATTACTCACTTTTATC
66 AGCTATGGTCTTACTCA-TTTTATC
* * * * * *
60722434 ATGATGCCATAACATCTTTCAACTATGGTCTTACTTATTTTTATCATGATGCCATAGCATCTTTT
1 ATGATGTCATAGCATCTTTCAACTATAGTCTTACTCATTTTTATCATGATGCCATATCATCTTTC
60722499 AGCTA-GGTTCTTACTCATTTT
66 AGCTATGG-TCTTACTCATTTT
60722520 TAGGCGTATA
Statistics
Matches: 158, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
89 81 0.51
90 77 0.49
ACGTcount: A:0.24, C:0.20, G:0.11, T:0.45
Consensus pattern (89 bp):
ATGATGTCATAGCATCTTTCAACTATAGTCTTACTCATTTTTATCATGATGCCATATCATCTTTC
AGCTATGGTCTTACTCATTTTATC
Found at i:60722520 original size:45 final size:45
Alignment explanation
Indices: 60722255--60722521 Score: 349
Period size: 45 Copynumber: 6.0 Consensus size: 45
60722245 GCACTTTCAT
* ** * * *
60722255 ATGATGTCATAGTGTCTTTCATCTATAGTCTTACTCATTTATATC
1 ATGATGCCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
**
60722300 ATGATGCCATATTATCTTTCAGCTATGGTCTTACTCA-TTTTATC
1 ATGATGCCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
* *
60722344 ATGATGTCATAGCATCTTTCAGCTATAGTCTTACTCATTTTTATC
1 ATGATGCCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
* * * *
60722389 ATGATGTCATATCATCTTTCAGCTATGGTATTACTCACTTTTATC
1 ATGATGCCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
* * *
60722434 ATGATGCCATAACATCTTTCAACTATGGTCTTACTTATTTTTATC
1 ATGATGCCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
*
60722479 ATGATGCCATAGCATCTTTTAGCTA-GGTTCTTACTCATTTTTA
1 ATGATGCCATAGCATCTTTCAGCTATGG-TCTTACTCATTTTTA
60722522 GGCGTATAGC
Statistics
Matches: 196, Mismatches: 24, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
44 41 0.21
45 155 0.79
ACGTcount: A:0.24, C:0.19, G:0.11, T:0.45
Consensus pattern (45 bp):
ATGATGCCATAGCATCTTTCAGCTATGGTCTTACTCATTTTTATC
Found at i:60725079 original size:16 final size:18
Alignment explanation
Indices: 60725046--60725085 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
60725036 ACGAAATTAG
*
60725046 AATTTGATTGAGAAAATT
1 AATTTAATTGAGAAAATT
60725064 -ATTTAATTGA-AAAATT
1 AATTTAATTGAGAAAATT
60725080 AATTTA
1 AATTTA
60725086 TTTAAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.42
Consensus pattern (18 bp):
AATTTAATTGAGAAAATT
Found at i:60731092 original size:27 final size:27
Alignment explanation
Indices: 60731057--60731109 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
60731047 TGTCGTATAA
*
60731057 CATATAATGCGATAAAATCGCTAATCT
1 CATATAATGCGATAAAATCGCCAATCT
*
60731084 CATATAATGTGATAAAATCGCCAATC
1 CATATAATGCGATAAAATCGCCAATC
60731110 CCCTCGGTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.28
Consensus pattern (27 bp):
CATATAATGCGATAAAATCGCCAATCT
Found at i:60732396 original size:226 final size:226
Alignment explanation
Indices: 60731993--60732453 Score: 778
Period size: 226 Copynumber: 2.0 Consensus size: 226
60731983 CTTTACTGAG
* * *
60731993 GATTTGGAGCATTTGGGTCAGCACCTAACATATTTAAATACTGAAAATTTAGTATCTAATCTCAA
1 GATTTGGAGCATTTGGGTCAACACCTAACATATTTAAATACTGAAAAATTAGTAGCTAATCTCAA
* * * *
60732058 TAAAAGTCCTTCATTTAATCAATCCATAATATTTTTCCGAGATCTATGTTGAAACAACAAACTAG
66 TAAAAATCCTTCATTTAATAAATCCATAATATTTTTCCAAGATCTATGTCGAAACAACAAACTAG
* *
60732123 TTTGCGATTACCCTCACTTACGCTTCCCAAATTGTCAAATCTGATTTGCTGAATACTCAAGAATA
131 TTTACGATTACCCTCACTTACGCTTCCCAAATTGTCAAATCTGATTTGCTAAATACTCAAGAATA
*
60732188 ATTTTTCCTCATTAAAACATGTTTCAAGTAT
196 ATTTTTCCTAATTAAAACATGTTTCAAGTAT
* *
60732219 GATTTGGAGCATTTGGGTCAACACTTAACATATTTAAATACTGAAAAATTAGTAGCTAATCTTAA
1 GATTTGGAGCATTTGGGTCAACACCTAACATATTTAAATACTGAAAAATTAGTAGCTAATCTCAA
60732284 TAAAAATCCTTCATTTAATAAATCCATAATATTTTTCCAAGATCTATGTCGAAACAACAAACTAG
66 TAAAAATCCTTCATTTAATAAATCCATAATATTTTTCCAAGATCTATGTCGAAACAACAAACTAG
* *
60732349 TTTACGATTACCCTCACTTACGCTTCCCAAATTTTCAAATTTGATTTGCTAAATACTCAAGAATA
131 TTTACGATTACCCTCACTTACGCTTCCCAAATTGTCAAATCTGATTTGCTAAATACTCAAGAATA
*
60732414 ATTTTTCCTAATTAAAACATGTTTCAAGTCT
196 ATTTTTCCTAATTAAAACATGTTTCAAGTAT
*
60732445 GATTAGGAG
1 GATTTGGAG
60732454 GGATTCAAGA
Statistics
Matches: 219, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
226 219 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (226 bp):
GATTTGGAGCATTTGGGTCAACACCTAACATATTTAAATACTGAAAAATTAGTAGCTAATCTCAA
TAAAAATCCTTCATTTAATAAATCCATAATATTTTTCCAAGATCTATGTCGAAACAACAAACTAG
TTTACGATTACCCTCACTTACGCTTCCCAAATTGTCAAATCTGATTTGCTAAATACTCAAGAATA
ATTTTTCCTAATTAAAACATGTTTCAAGTAT
Found at i:60734304 original size:40 final size:40
Alignment explanation
Indices: 60734274--60734443 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
60734264 GGACTAAGAT
* *
60734274 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * *
60734314 CCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** *
60734354 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
60734394 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
60734433 CCGAAGGCATT
1 CCGAAGGCATT
60734444 TGAACGAGGA
Statistics
Matches: 116, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 33 0.28
40 83 0.72
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:60734370 original size:80 final size:79
Alignment explanation
Indices: 60734221--60734443 Score: 241
Period size: 80 Copynumber: 2.8 Consensus size: 79
60734211 TTGAATGCTG
* * * * * * * * *
60734221 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
*
60734285 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* * *
60734301 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* **
60734366 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * *
60734381 TCCGGGTTACGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
60734444 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
79 35 0.29
80 82 0.68
81 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:60734463 original size:79 final size:80
Alignment explanation
Indices: 60734296--60734478 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
60734286 GTGCGAGATA
* * *
60734296 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
60734361 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
60734376 TTAAATCCGGGTTACGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
60734440 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
60734455 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
60734479 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:60762354 original size:12 final size:13
Alignment explanation
Indices: 60762332--60762360 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
60762322 AAGTTTTATT
60762332 TTTATTTTATTTA
1 TTTATTTTATTTA
60762345 TTTA-TTTATTTA
1 TTTATTTTATTTA
60762357 TTTA
1 TTTA
60762361 CTTAGTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:60770049 original size:29 final size:29
Alignment explanation
Indices: 60769990--60770063 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
60769980 GTTGTGAGAT
* *
60769990 TGGCACTAGGTGTGCGAACTTGAAATGCA
1 TGGCACTAAGTGTGCGAACTTGAAATACA
* *
60770019 TGGCACTAAGTGTGCG-AGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAACTTGAAA-TACA
*
60770048 TGGAACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
60770064 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 6 0.15
29 33 0.85
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAACTTGAAATACA
Found at i:60774938 original size:47 final size:47
Alignment explanation
Indices: 60774867--60775600 Score: 1263
Period size: 47 Copynumber: 15.5 Consensus size: 47
60774857 TGAATAAATA
60774867 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
60774916 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
60774963 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
60775010 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCTATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
60775057 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
60775106 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
60775153 TGAAAGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
60775200 TGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATG
1 TGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* *
60775249 TGACAGTGTATATATTTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
60775296 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
60775343 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
60775390 TGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
60775437 TGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
60775484 TGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATG
* * * * * *
60775531 TGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
60775578 TGAAAGTGTATAAATGTGATAAG
1 TGAAAGTGTATATATGTGATAAG
60775601 TCCCGAAGGG
Statistics
Matches: 659, Mismatches: 20, Indels: 14
0.95 0.03 0.02
Matches are distributed among these distances:
46 2 0.00
47 558 0.85
48 1 0.00
49 98 0.15
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
Found at i:60775190 original size:190 final size:190
Alignment explanation
Indices: 60774867--60775600 Score: 1280
Period size: 190 Copynumber: 3.9 Consensus size: 190
60774857 TGAATAAATA
60774867 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
60774932 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
66 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
60774997 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCTATGTGATGAATG
131 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
60775057 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
60775122 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAAGCCTAATGGCC
66 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
60775187 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATG
131 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
60775249 TGACAGTGTATATAT-T-TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
60775312 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
66 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
60775377 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
131 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
60775437 TGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
* * * *
60775500 TGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGC
66 TGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* * * *
60775564 CAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
130 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
60775601 TCCCGAAGGG
Statistics
Matches: 522, Mismatches: 17, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
186 5 0.01
187 3 0.01
188 180 0.34
190 282 0.54
191 1 0.00
192 51 0.10
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (190 bp):
TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
Found at i:60775775 original size:37 final size:37
Alignment explanation
Indices: 60775719--60775797 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
60775709 CCGAGCTCTA
* * *
60775719 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
60775756 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
60775793 AAGAC
1 AAGAC
60775798 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:60779791 original size:47 final size:47
Alignment explanation
Indices: 60779712--60780305 Score: 903
Period size: 47 Copynumber: 12.6 Consensus size: 47
60779702 TATTTGAATA
60779712 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
60779761 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60779808 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
60779855 AATGTGAAAGTG--TATATGAGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60779900 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * **
60779949 AATGTG-AAGTGTATATATTATGTATATGG--GAATTGATG-TGGTGATG
1 AATGTGAAAGTGTATATA-TGTG-ATAAGGCCTAATGGCCGAT-GTGATG
60779995 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
60780044 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60780091 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60780138 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60780185 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
60780232 AATGTGAAAGTGTATATATGTGACAGGGTCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
60780279 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
60780306 TCCCGAAGGG
Statistics
Matches: 503, Mismatches: 29, Indels: 28
0.90 0.05 0.05
Matches are distributed among these distances:
45 45 0.09
46 23 0.05
47 342 0.68
48 13 0.03
49 79 0.16
50 1 0.00
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:60780219 original size:283 final size:283
Alignment explanation
Indices: 60779712--60780250 Score: 1010
Period size: 283 Copynumber: 1.9 Consensus size: 283
60779702 TATTTGAATA
60779712 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
60779777 TATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
60779842 GGCCGATGTGATGAATGTGAAAGTGTATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGA
131 GGCCGATGTGATGAATGTGAAAGTGTATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGA
60779907 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATTATG
196 AAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATTATG
60779971 TATATGGGAATTGATGTGGTGATG
260 TATATGGGAATTGATGTGGTGATG
60779995 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
60780060 TATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
60780125 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
131 GGCCGATGTGATGAATGTGAAAGTG--TATATGAGATAAGGCCTAATGGCCGATGTGATGAATGT
60780190 GAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
194 GAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
60780251 GTGACAGGGT
Statistics
Matches: 250, Mismatches: 3, Indels: 5
0.97 0.01 0.02
Matches are distributed among these distances:
283 194 0.78
284 12 0.05
285 44 0.18
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (283 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATTATGT
ATATGGGAATTGATGTGGTGATG
Found at i:60781741 original size:29 final size:29
Alignment explanation
Indices: 60781706--60781779 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
60781696 GTTGTGAGAT
* *
60781706 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
60781735 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
60781764 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
60781780 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:60782211 original size:40 final size:40
Alignment explanation
Indices: 60782088--60782363 Score: 263
Period size: 40 Copynumber: 6.9 Consensus size: 40
60782078 TCGAATGATG
** *
60782088 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
60782128 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
* *
60782168 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
60782208 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
** *
60782248 TCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * *
60782288 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTAGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
60782328 TCCGGGCTAGGTCCTGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
60782364 CGTGTATTTG
Statistics
Matches: 197, Mismatches: 35, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 178 0.90
41 18 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:60782304 original size:120 final size:121
Alignment explanation
Indices: 60782088--60782364 Score: 301
Period size: 120 Copynumber: 2.3 Consensus size: 121
60782078 TCGAATGATG
**
60782088 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
* * ** *
60782151 TGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
65 TCGTGCGAGTGACTAAATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGCGATATA
** * * *
60782208 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTTCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAG-GCAT
* * * * * * *
60782272 TCGTGCTAGTGA-TATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTAGTGTTATG
65 TCGTGCGAGTGACTAAATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGCGATATA
* * * *
60782328 TCCGGGCTAGGTCCTGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
60782365 GTGTATTTGG
Statistics
Matches: 130, Mismatches: 23, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
120 104 0.80
121 20 0.15
122 6 0.05
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (121 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTGACTAAATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGCGATATA
Found at i:60786839 original size:47 final size:47
Alignment explanation
Indices: 60786788--60787104 Score: 485
Period size: 47 Copynumber: 6.7 Consensus size: 47
60786778 TTAGGATTCT
* * *
60786788 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
60786835 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
60786882 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
60786929 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
60786976 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-CTGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCG
* * * *
60787023 ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
60787070 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
60787105 TCCCGAAGGG
Statistics
Matches: 254, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
46 3 0.01
47 250 0.98
48 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:60786863 original size:25 final size:25
Alignment explanation
Indices: 60786835--60786913 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
60786825 CTAATGGCCG
60786835 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
60786860 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
60786882 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
60786907 ATGTGAT
1 ATGTGAT
60786914 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:60787279 original size:37 final size:37
Alignment explanation
Indices: 60787223--60787301 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
60787213 CCGAGCTCTA
* * *
60787223 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
60787260 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
60787297 AAGAC
1 AAGAC
60787302 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:60791328 original size:96 final size:96
Alignment explanation
Indices: 60791216--60792289 Score: 1849
Period size: 96 Copynumber: 11.3 Consensus size: 96
60791206 TATTTGAATA
60791216 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
60791281 TATGTGATAAGGCCTAATGGCTGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
60791312 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
60791375 TATGAGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
60791406 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
60791471 TATATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATATGTGATAAGGCCTAATGGCCGATGTGATG
60791504 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
60791567 TATATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATATGTGATAAGGCCTAATGGCCGATGTGATG
*
60791600 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAATG-ATTTGAAAGTGGTA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG-ATGAATGTGAAAGT-GTA
60791662 TATATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATATGTGATAAGGCCTAATGGCCGATGTGATG
60791695 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
60791758 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
60791789 AATGTGAAAGT-TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
60791853 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
60791884 AATATGAAA--GT-TATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
60791946 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
60791977 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGACAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
60792042 TATGTGATAAGGCCTAATGGCCAATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
60792073 AATGTGAAAGTGTATATATA--TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
60792136 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
60792167 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * * * *
60792232 TATGTGACAGGGCCGAGTGGCCAACGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
60792263 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
60792290 TCCCGAAGGG
Statistics
Matches: 943, Mismatches: 20, Indels: 32
0.95 0.02 0.03
Matches are distributed among these distances:
93 89 0.09
94 245 0.26
95 181 0.19
96 378 0.40
97 4 0.00
98 46 0.05
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:60791330 original size:49 final size:47
Alignment explanation
Indices: 60791216--60792289 Score: 1846
Period size: 47 Copynumber: 22.6 Consensus size: 47
60791206 TATTTGAATA
60791216 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
60791265 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60791312 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
60791359 AATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60791406 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
60791455 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
60791504 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60791551 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
60791600 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATG
*
60791648 -ATTTGAAAGTGGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGT-GTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60791695 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60791742 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
60791789 AATGTGAAAGTTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAG-TGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60791837 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
60791884 AATATGAAAGT-TATATATGTGATAAGACCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60791930 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60791977 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
60792026 AATGTGACAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
60792073 AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60792120 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60792167 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
60792216 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
60792263 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
60792290 TCCCGAAGGG
Statistics
Matches: 984, Mismatches: 28, Indels: 28
0.95 0.03 0.03
Matches are distributed among these distances:
46 44 0.04
47 602 0.61
48 91 0.09
49 247 0.25
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:60796421 original size:31 final size:31
Alignment explanation
Indices: 60796377--60796493 Score: 173
Period size: 31 Copynumber: 3.8 Consensus size: 31
60796367 TCAATCTCAG
60796377 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* *
60796407 CATATCACTAGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* * *
60796438 CATATCACTGAGCCGAAGCCTTTTCACTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
60796469 CATATCATTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
60796494 TGTAACAATA
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
30 5 0.06
31 73 0.94
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.32
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:60796799 original size:20 final size:20
Alignment explanation
Indices: 60796776--60796824 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
60796766 CATTATGAAT
60796776 ATATCATGTGCATATCATAC
1 ATATCATGTGCATATCATAC
*
60796796 ATATCATGTGCATGTCATAC
1 ATATCATGTGCATATCATAC
60796816 ATATCATGT
1 ATATCATGT
60796825 ATATCAGAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (20 bp):
ATATCATGTGCATATCATAC
Found at i:60803202 original size:53 final size:53
Alignment explanation
Indices: 60803021--60803275 Score: 254
Period size: 55 Copynumber: 4.8 Consensus size: 53
60803011 ATTAGGGTTT
* *
60803021 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA-TTGGTAA-G-TTCATAAGGC
* * * *
60803076 AAGGAAATCACGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
60803131 AAAGG-TCCCATGTAAGACCATG-CTAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTC-AAGACATGGCATTGGTAAGTTCATAAGGC
* *
60803184 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-TTAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
* * ** *
60803233 AAGGATACCATGTAAGACAATGACAAGTGATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
60803276 GTATCCGCGT
Statistics
Matches: 171, Mismatches: 22, Indels: 20
0.80 0.10 0.09
Matches are distributed among these distances:
49 39 0.23
52 9 0.05
53 43 0.25
54 9 0.05
55 67 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:60803227 original size:108 final size:110
Alignment explanation
Indices: 60803028--60803228 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
60803018 TTTAAGGATA
*
60803028 CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTCTAAGGCAAGGAAATCACGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTCTAAGGCAAGGAAACCACGTAAGA
*
60803093 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * * *
60803138 CCATGTAAGACCATGCTAAGGCATGGCA-TTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTC-TAAGGCAAGGAAACCACGTAAG
*
60803200 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
60803229 TTAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 6 0.07
110 27 0.33
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTTTCTAAGGCAAGGAAACCACGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:60807063 original size:12 final size:12
Alignment explanation
Indices: 60807046--60807071 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
60807036 CACACGCCCA
60807046 TGTGCTAGGCTG
1 TGTGCTAGGCTG
60807058 TGTGCTAGGCTG
1 TGTGCTAGGCTG
60807070 TG
1 TG
60807072 CCAAAACTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.42, T:0.35
Consensus pattern (12 bp):
TGTGCTAGGCTG
Found at i:60812860 original size:50 final size:50
Alignment explanation
Indices: 60812785--60812887 Score: 206
Period size: 50 Copynumber: 2.1 Consensus size: 50
60812775 TCATTACATG
60812785 TAAACCTCATCTCATCAATTTTTATACATGCTAGATTATCCCCTTTATAT
1 TAAACCTCATCTCATCAATTTTTATACATGCTAGATTATCCCCTTTATAT
60812835 TAAACCTCATCTCATCAATTTTTATACATGCTAGATTATCCCCTTTATAT
1 TAAACCTCATCTCATCAATTTTTATACATGCTAGATTATCCCCTTTATAT
60812885 TAA
1 TAA
60812888 GGACTTCCAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.31, C:0.23, G:0.04, T:0.42
Consensus pattern (50 bp):
TAAACCTCATCTCATCAATTTTTATACATGCTAGATTATCCCCTTTATAT
Found at i:60814601 original size:49 final size:50
Alignment explanation
Indices: 60814524--60814768 Score: 273
Period size: 49 Copynumber: 4.9 Consensus size: 50
60814514 TAGCCGAAGC
* *
60814524 TATCTGGTACGA-ATAGTAGCCTACACTTAGTACTACACATGTGACC-AAT
1 TATCTGGTAC-ACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAT
* * * * *
60814573 TATCCGGTACACGTGGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAT
* * * *
60814623 CATCTGATACA-AGTAGTAGCCTGCCCTTAGTAATACACACGTGACCGAAGT
1 TATCTGGTACACA-TAGTAGCCTGCACTTAGTACTACACACGTGACCGAA-T
* * * * *
60814674 TATCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC-AAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAT
* *
60814723 TATTTGGTACACATAGTAGCTTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
60814769 TCACAATAGA
Statistics
Matches: 160, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
48 1 0.01
49 79 0.49
50 44 0.28
51 35 0.22
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAT
Found at i:60814712 original size:101 final size:98
Alignment explanation
Indices: 60814536--60814768 Score: 279
Period size: 100 Copynumber: 2.3 Consensus size: 98
60814526 TCTGGTACGA
* * * * *
60814536 ATAGTAGCCTACACTTAGTACTACACATGTGACCAATTATCCGGTACACGTGGTAGCCTGCACTT
1 ATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTACACTT
*
60814601 AGTACTACACACGTGACCTAACCATCTGATACA-
66 AGTACTACACACGCGACC-AACCATCTGATACAC
* * * *
60814634 AGTAGTAGCCTGCCCTTAGTAATACACACGTGACCGAAGTTATCGGGTACGCATAGTAGCCTACA
1 A-TAGTAGCCTGCACTTAGTACTACACACGTGACC-AA-TTATCCGGTACACATAGTAGCCTACA
* ** * *
60814699 CTTAGTACTACACATGCGACCAATTATTTGGTACAC
63 CTTAGTACTACACACGCGACCAACCATCTGATACAC
*
60814735 ATAGTAGCTTGCACTTAGTACTACACACGTGACC
1 ATAGTAGCCTGCACTTAGTACTACACACGTGACC
60814769 TCACAATAGA
Statistics
Matches: 113, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
98 1 0.01
99 29 0.26
100 42 0.37
101 41 0.36
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (98 bp):
ATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTACACTT
AGTACTACACACGCGACCAACCATCTGATACAC
Found at i:60833070 original size:40 final size:40
Alignment explanation
Indices: 60833020--60833127 Score: 144
Period size: 40 Copynumber: 2.7 Consensus size: 40
60833010 CTAGCATGAT
* *
60833020 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATAACACCAGCACGAA
** * *
60833060 TTTTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATAACACCAGCACGAA
*
60833100 TGCTCCTTGGGACTTAGCCCGTGATATA
1 TGCTCCTCGGGACTTAGCCCG-GATATA
60833128 CTCCTCGGGA
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
40 52 0.90
41 6 0.10
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCCTCGGGACTTAGCCCGGATATAACACCAGCACGAA
Found at i:60833131 original size:26 final size:25
Alignment explanation
Indices: 60833102--60833152 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
60833092 AGCACGAATG
*
60833102 CTCCTTGGGACTTAGCCCGTGATATA
1 CTCCTCGGGACTTAGCCCG-GATATA
60833128 CTCCTCGGGACTTAGCCCGGATATA
1 CTCCTCGGGACTTAGCCCGGATATA
60833153 TCACTAGCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27
Consensus pattern (25 bp):
CTCCTCGGGACTTAGCCCGGATATA
Found at i:60833169 original size:66 final size:65
Alignment explanation
Indices: 60833063--60833192 Score: 242
Period size: 66 Copynumber: 2.0 Consensus size: 65
60833053 GCACGAATTT
*
60833063 TCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTTGGGACTTAGCCCGTGATATA
1 TCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCG-GATATA
60833128 C
65 C
60833129 TCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATA
1 TCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATA
60833193 TCACTAGCAC
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
65 6 0.10
66 57 0.90
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (65 bp):
TCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATAC
Found at i:60833183 original size:40 final size:40
Alignment explanation
Indices: 60833128--60833354 Score: 402
Period size: 40 Copynumber: 5.7 Consensus size: 40
60833118 CCGTGATATA
60833128 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
*
60833168 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACAAATG
1 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * *
60833208 CTCTTCGAGACTTAGCCCGGATATATCACTAGCATGAATG
1 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
60833248 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
60833288 CTCCTC-GGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
*
60833327 CTCTTCGGGACTTAGCCCGGATATATCA
1 CTCCTCGGGACTTAGCCCGGATATATCA
60833355 TTCTCAATTC
Statistics
Matches: 177, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 38 0.21
40 139 0.79
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:60833220 original size:106 final size:105
Alignment explanation
Indices: 60833026--60833232 Score: 326
Period size: 106 Copynumber: 2.0 Consensus size: 105
60833016 TGATTGCTCT
**
60833026 TCGGGACCTAGCCCGGATATAACACCAGCACGAATTTTCCTCGGGACTTAGCCCGGATATATCAC
1 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
* *
60833091 TAGCACGAATGCTCCTTGGGACTTAGCCCGTGATATACTCC
66 TAGCACAAATGCTCCTTGAGACTTAGCCCG-GATATACTCC
* * *
60833132 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
1 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
60833197 TAGCACAAATGCT-CTTCGAGACTTAGCCCGGATATA
66 TAGCACAAATGCTCCTT-GAGACTTAGCCCGGATATA
60833233 TCACTAGCAT
Statistics
Matches: 93, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
105 9 0.10
106 84 0.90
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (105 bp):
TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
TAGCACAAATGCTCCTTGAGACTTAGCCCGGATATACTCC
Found at i:60834683 original size:37 final size:37
Alignment explanation
Indices: 60834624--60834732 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
60834614 AGCTCAGACG
* * *
60834624 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
60834661 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
60834698 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
60834733 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:60834933 original size:48 final size:48
Alignment explanation
Indices: 60834879--60835000 Score: 208
Period size: 48 Copynumber: 2.5 Consensus size: 48
60834869 GCACATCGCC
*
60834879 TACATATTTCACACTAGTCATTCGGCTTCACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTCACCACATATACATATCTCA
*
60834927 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTCACCACATATACATATCTCA
* *
60834975 TACATGTTTCACATTAGCCATTCGGC
1 TACATATTTCACACTAGCCATTCGGC
60835001 CTTATCACAC
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.34
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTCACCACATATACATATCTCA
Found at i:60835042 original size:47 final size:47
Alignment explanation
Indices: 60834983--60835100 Score: 200
Period size: 47 Copynumber: 2.5 Consensus size: 47
60834973 CATACATGTT
* *
60834983 TCACATTAGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACATTCA
* *
60835030 TCACATTGGCCATTCGGCCTTAACACATAAATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACATTCA
60835077 TCACATTGGCCATTCGGCCTTATC
1 TCACATTGGCCATTCGGCCTTATC
60835101 TCATATATAC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACATTCA
Found at i:60841792 original size:29 final size:30
Alignment explanation
Indices: 60841737--60841806 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 30
60841727 CATTAGGGTG
*
60841737 TTTTAGGCACTATGTGCCGATAATTACAGT
1 TTTTAGGCACTATGTACCGATAATTACAGT
* *
60841767 TTTTAGGTACTATGTACCGAT-GTTACAGT
1 TTTTAGGCACTATGTACCGATAATTACAGT
**
60841796 TTCAAGGCACT
1 TTTTAGGCACT
60841807 CTATACTAGT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 15 0.44
30 19 0.56
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (30 bp):
TTTTAGGCACTATGTACCGATAATTACAGT
Found at i:60847488 original size:60 final size:60
Alignment explanation
Indices: 60847395--60847514 Score: 215
Period size: 60 Copynumber: 2.0 Consensus size: 60
60847385 CTAGAACATT
60847395 CATGACATTATGAAAGGATCTAAAATGATTCAAATGGTCAACTAGGTTTGT-AGAGCAATC
1 CATGACATTATGAAAGGATCTAAAATGATTCAAATGGTCAACTAGGTTTGTGA-AGCAATC
*
60847455 CATGACGTTATGAAAGGATCTAAAATGATTCAAATGGTCAACTAGGTTTGTGAAGCAATC
1 CATGACATTATGAAAGGATCTAAAATGATTCAAATGGTCAACTAGGTTTGTGAAGCAATC
60847515 ATAGATCTCT
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
60 57 0.98
61 1 0.02
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (60 bp):
CATGACATTATGAAAGGATCTAAAATGATTCAAATGGTCAACTAGGTTTGTGAAGCAATC
Found at i:60849837 original size:22 final size:22
Alignment explanation
Indices: 60849812--60849854 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
60849802 TGCTGTTATG
60849812 GACTTAGGTCCGAATCTGTATA
1 GACTTAGGTCCGAATCTGTATA
*
60849834 GACTTAGGTCCGAATTTGTAT
1 GACTTAGGTCCGAATCTGTAT
60849855 CTGACTGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (22 bp):
GACTTAGGTCCGAATCTGTATA
Found at i:60850048 original size:17 final size:17
Alignment explanation
Indices: 60850026--60850060 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
60850016 ACTATTTTTA
60850026 TTTAGTAATAATGGTTT
1 TTTAGTAATAATGGTTT
60850043 TTTAGTAATAATGGTTT
1 TTTAGTAATAATGGTTT
60850060 T
1 T
60850061 ACTTTAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.17, T:0.54
Consensus pattern (17 bp):
TTTAGTAATAATGGTTT
Found at i:60850066 original size:20 final size:19
Alignment explanation
Indices: 60850021--60850066 Score: 69
Period size: 17 Copynumber: 2.5 Consensus size: 19
60850011 AGAGAACTAT
60850021 TTTTATTTAGTAATAATGG
1 TTTTATTTAGTAATAATGG
60850040 -TTT-TTTAGTAATAATGG
1 TTTTATTTAGTAATAATGG
60850057 TTTTACTTTA
1 TTTTA-TTTA
60850067 AAATCTGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 14 0.58
18 6 0.25
20 4 0.17
ACGTcount: A:0.28, C:0.02, G:0.13, T:0.57
Consensus pattern (19 bp):
TTTTATTTAGTAATAATGG
Found at i:60853160 original size:17 final size:18
Alignment explanation
Indices: 60853128--60853161 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
60853118 TGGGTCGGAC
60853128 TGGGCTGTGTGAGCCCAA
1 TGGGCTGTGTGAGCCCAA
*
60853146 TGGGCT-TGTGGGCCCA
1 TGGGCTGTGTGAGCCCA
60853162 CACGGATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.12, C:0.24, G:0.41, T:0.24
Consensus pattern (18 bp):
TGGGCTGTGTGAGCCCAA
Found at i:60853701 original size:27 final size:27
Alignment explanation
Indices: 60853671--60853814 Score: 207
Period size: 27 Copynumber: 5.3 Consensus size: 27
60853661 CCCCGGGTTA
* *
60853671 TAAAATGACCCTAATACCTCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* *
60853698 TAAAATGACCGTAATACCCTTATAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* *
60853725 TAAAATGACCATAATGCCCCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
*
60853752 TAAAATGATCGTAATACCCCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
*
60853779 TAAAATGACCGTAATACCCCTGTATGG
1 TAAAATGACCGTAATACCCCTGTAGGG
*
60853806 TAACATGAC
1 TAAAATGAC
60853815 GATTATGCGC
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (27 bp):
TAAAATGACCGTAATACCCCTGTAGGG
Found at i:60854040 original size:26 final size:27
Alignment explanation
Indices: 60853950--60854049 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 27
60853940 ATGGAGGAAG
* *
60853950 TACTG-TACTGGTGACTATGTCACATT
1 TACTGTTACTGGTGGCTATGCCACATT
* *
60853976 CACTGTTACTGGTGGCTATGCCACAAT
1 TACTGTTACTGGTGGCTATGCCACATT
*
60854003 TACTGATACTGGTGGCT-TGCCACATT
1 TACTGTTACTGGTGGCTATGCCACATT
* **
60854029 TACTGTTTCTGGCAGCTATGC
1 TACTGTTACTGGTGGCTATGC
60854050 TGCATTATTA
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
26 25 0.41
27 36 0.59
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTATGCCACATT
Done.