Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 188 of 344
Found at i:62860692 original size:26 final size:26
Alignment explanation
Indices: 62860661--62860712 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
62860651 GAATTAAAGG
62860661 ATGTTTTAATTAATGTAATGATTAAA
1 ATGTTTTAATTAATGTAATGATTAAA
62860687 ATGTTTTAATTAATGTAATGATTAAA
1 ATGTTTTAATTAATGTAATGATTAAA
62860713 TGAGTGAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (26 bp):
ATGTTTTAATTAATGTAATGATTAAA
Found at i:62861344 original size:49 final size:49
Alignment explanation
Indices: 62861194--62861463 Score: 259
Period size: 49 Copynumber: 5.6 Consensus size: 49
62861184 TATATGTGCT
* * * * *
62861194 AGTGTAAGACATGTATGGGACAT-GCATTGGCCAT-AT-TATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGATATATGAGAGCC
** * * * *
62861240 AGTGTAAGAAATGTCTGGGACAT-GCATCGGCCTCGAGATATGCA-AGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGATATATG-AGAGCC
* * *
62861288 AGTGTAAGACCTGTCTGGGACATGGCATCAACATTGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGATATATGAGAGCC
* * * **
62861337 AGTGTAAGACCTGTGTGGGACATGGCATCGGCCTTGATATATGAAAGTT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGATATATGAGAGCC
*
62861386 AGTGTAAGACCTGTCTGGGACATGGAATCGA-CTTAGATATAT--GAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTT-GATATATGAGAGCC
* *
62861433 AGTGTAAGACCATGTTTGGAACATGGCATCG
1 AGTGTAAGACC-TGTCTGGGACATGGCATCG
62861464 GCATCGTACC
Statistics
Matches: 184, Mismatches: 33, Indels: 12
0.80 0.14 0.05
Matches are distributed among these distances:
46 29 0.16
47 14 0.08
48 48 0.26
49 93 0.51
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGATATATGAGAGCC
Found at i:62861396 original size:98 final size:98
Alignment explanation
Indices: 62861231--62861465 Score: 316
Period size: 98 Copynumber: 2.4 Consensus size: 98
62861221 TGGCCATATT
** *
62861231 ATGAGAGCCAGTGTAAGAAATGTCTGGGACAT-GCATCGGCCTCGAGATATGCAAGCTAGTGTAA
1 ATGAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGAGATATGAAAGCTAGTGTAA
*
62861295 GACCTGTCTGGGACATGGCATCAACATT-GATAG
66 GACCTGTCTGGGACATGGAATCAAC-TTAGATAG
* * * *
62861328 ATGAGAGCCAGTGTAAGACCTGTGTGGGACATGGCATCGGCCTTGATATATGAAAGTTAGTGTAA
1 ATGAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGAGATATGAAAGCTAGTGTAA
* *
62861393 GACCTGTCTGGGACATGGAATCGACTTAGATAT
66 GACCTGTCTGGGACATGGAATCAACTTAGATAG
* *
62861426 AT--GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 ATGAGAGCCAGTGTAAGACC-TGTCTGGGACATGGCATCGGC
62861466 ATCGTACCCT
Statistics
Matches: 123, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
96 16 0.13
97 50 0.41
98 57 0.46
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (98 bp):
ATGAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGAGATATGAAAGCTAGTGTAA
GACCTGTCTGGGACATGGAATCAACTTAGATAG
Found at i:62867204 original size:43 final size:43
Alignment explanation
Indices: 62867103--62867205 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
62867093 TTGGTTTTCA
**
62867103 GCACTAAGTGTGCGGATAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
62867146 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
62867189 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
62867206 TTGAAATGCA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:62867222 original size:29 final size:29
Alignment explanation
Indices: 62867187--62867260 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
62867177 GTTGTGAGAT
* *
62867187 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
62867216 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
62867245 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
62867261 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:62867694 original size:40 final size:40
Alignment explanation
Indices: 62867571--62867806 Score: 208
Period size: 40 Copynumber: 5.9 Consensus size: 40
62867561 TCGAATGATG
** *
62867571 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* * * ** * * *
62867611 TCCGGACTAAGACTCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TATA
*
62867651 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
62867691 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
62867731 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
62867771 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
62867807 CGTGTATTCG
Statistics
Matches: 160, Mismatches: 34, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
40 142 0.89
41 18 0.11
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:62873408 original size:15 final size:15
Alignment explanation
Indices: 62873388--62873442 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
62873378 GTATCGTAAC
62873388 TTGGATTTCTCTATT
1 TTGGATTTCTCTATT
*
62873403 TTGGATCTCT-TAATT
1 TTGGATTTCTCT-ATT
* *
62873418 CTAGG-TTTCTCCATT
1 -TTGGATTTCTCTATT
62873433 TTGGATTTCT
1 TTGGATTTCT
62873443 TTATCTTGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
14 4 0.13
15 24 0.77
16 3 0.10
ACGTcount: A:0.15, C:0.16, G:0.15, T:0.55
Consensus pattern (15 bp):
TTGGATTTCTCTATT
Found at i:62874976 original size:42 final size:42
Alignment explanation
Indices: 62874927--62875032 Score: 124
Period size: 42 Copynumber: 2.5 Consensus size: 42
62874917 TTCATTTTCT
** ** *
62874927 TGATGCCATAGTTCAACTATGGTTTTACACATCTTCACATAA
1 TGATGCCATAGCCCAACTATGGCCTTACACATATTCACATAA
*
62874969 TGATGCCATAGCCCAGCTATGGCCTTACACATATTCACAT-A
1 TGATGCCATAGCCCAACTATGGCCTTACACATATTCACATAA
* *
62875010 TCGATGTCATAGCCCAGCTATGG
1 T-GATGCCATAGCCCAACTATGG
62875033 TCATACATGT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 2 0.04
42 54 0.96
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
TGATGCCATAGCCCAACTATGGCCTTACACATATTCACATAA
Found at i:62875049 original size:42 final size:42
Alignment explanation
Indices: 62874952--62875177 Score: 116
Period size: 48 Copynumber: 4.9 Consensus size: 42
62874942 ACTATGGTTT
** *
62874952 TACACATCTTCACATAAT-GATGCCATAGCCCAGCTATGGCCT
1 TACACATAATCACAT-ATCGATGCCATAGCCCAGCTATGGCCA
* *
62874994 TACACATATTCACATATCGATGTCATAGCCCAGCTATGGTCATACA
1 TACACATAATCACATATCGATGCCATAGCCCAGCTATGG-C---CA
**
62875040 TGTAATCACAT-ATCACATATCGATGCCATAGCCCAGCTATAATCTTACA
1 --T-A-CACATAATCACATATCGATGCCATAGCCCAGCTAT-GGC---CA
* * * * *
62875089 TGA-ATCAGATATCACATATCGATGCCATAGTCCAGCTATAGTCT
1 T-ACA-CATA-ATCACATATCGATGCCATAGCCCAGCTATGGCCA
*
62875133 TACACGAATCACATATCACATATCGATGCCATAGCCCAACTATGG
1 TACAC--AT---A-ATCACATATCGATGCCATAGCCCAGCTATGG
62875178 TCTTACTCGA
Statistics
Matches: 147, Mismatches: 18, Indels: 32
0.75 0.09 0.16
Matches are distributed among these distances:
41 2 0.01
42 34 0.23
43 3 0.02
44 3 0.02
45 2 0.01
46 3 0.02
47 3 0.02
48 59 0.40
49 33 0.22
50 5 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (42 bp):
TACACATAATCACATATCGATGCCATAGCCCAGCTATGGCCA
Found at i:62875077 original size:91 final size:93
Alignment explanation
Indices: 62874961--62875197 Score: 283
Period size: 96 Copynumber: 2.6 Consensus size: 93
62874951 TTACACATCT
* * *
62874961 TCACATAAT-GATGCCATAGCCCAGCTATGGCCTTAC-A-CATAT-TCACATATCGATGTCATAG
1 TCACAT-ATCGATGCCATAGCCCAGCTATGGTCTTACAATCAGATATCACATATCGATGCCATAG
* *
62875022 CCCAGCTATGGTCATACATGTAATCACATA
65 CCCAGCTATAGTCATACACG-AATCACATA
**
62875052 TCACATATCGATGCCATAGCCCAGCTATAATCTTACATGAATCAGATATCACATATCGATGCCAT
1 TCACATATCGATGCCATAGCCCAGCTATGGTCTTAC---AATCAGATATCACATATCGATGCCAT
* *
62875117 AGTCCAGCTATAGTCTTACACGAATCACATA
63 AGCCCAGCTATAGTCATACACGAATCACATA
*
62875148 TCACATATCGATGCCATAGCCCAACTATGGTCTTAC--TC-GA-ATCACATATC
1 TCACATATCGATGCCATAGCCCAGCTATGGTCTTACAATCAGATATCACATATC
62875198 TCACTGATGC
Statistics
Matches: 127, Mismatches: 12, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
89 10 0.08
90 4 0.03
91 32 0.25
95 1 0.01
96 46 0.36
97 34 0.27
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.27
Consensus pattern (93 bp):
TCACATATCGATGCCATAGCCCAGCTATGGTCTTACAATCAGATATCACATATCGATGCCATAGC
CCAGCTATAGTCATACACGAATCACATA
Found at i:62875113 original size:48 final size:48
Alignment explanation
Indices: 62874996--62875197 Score: 289
Period size: 48 Copynumber: 4.2 Consensus size: 48
62874986 TATGGCCTTA
* * *
62874996 CACATATTCACATATCGATGTCATAGCCCAGCTATGGTCATACATGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATAGTCTTACATG-AAT
*
62875046 CACATATCACATATCGATGCCATAGCCCAGCTATAATCTTACATGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATAGTCTTACATGAAT
* * *
62875094 CAGATATCACATATCGATGCCATAGTCCAGCTATAGTCTTACACGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATAGTCTTACATGAAT
* *
62875142 CACATATCACATATCGATGCCATAGCCCAACTATGGTCTTAC-TCGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATAGTCTTACAT-GAAT
62875190 CACATATC
1 CACATATC
62875198 TCACTGATGC
Statistics
Matches: 138, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
48 97 0.70
49 35 0.25
50 6 0.04
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATAGTCTTACATGAAT
Found at i:62879328 original size:93 final size:93
Alignment explanation
Indices: 62879169--62879339 Score: 243
Period size: 93 Copynumber: 1.8 Consensus size: 93
62879159 GCCCATAAGT
** * * *
62879169 GAACTCAGACTCAACTCAACAAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
62879234 CGAGCTCCGATGCCTAGTTACATCTCAC
66 CGAGCTCCGATGCCTAGTTACATCTCAC
* * * *
62879262 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCGTCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
* *
62879327 CGAGTTCGGATGC
66 CGAGCTCCGATGC
62879340 TCAACCATCC
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 67 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGCTCCGATGCCTAGTTACATCTCAC
Found at i:62880860 original size:43 final size:43
Alignment explanation
Indices: 62880710--62880867 Score: 157
Period size: 43 Copynumber: 3.7 Consensus size: 43
62880700 GATATCTTTT
* *
62880710 CGTGTAAGACCACGT-TGGGA-TGTTGGCATCAAT-TTATGATTTA
1 CGTGTAAGACCACGTCTGGGACAG-TGGCATCGATATT-TGA-TTA
* * *
62880753 CGTGTAAGACCATGTATGGGACA-TCGGCATCG-TATTTGATTT
1 CGTGTAAGACCACGTCTGGGACAGT-GGCATCGATATTTGATTA
62880795 CGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACAGTGGCATCGATATTTGATTA
* * *
62880838 CATGTAAGACCACGTCTAGGACATTGGCAT
1 CGTGTAAGACCACGTCTGGGACAGTGGCAT
62880868 TGTATGAGCT
Statistics
Matches: 97, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
42 29 0.30
43 54 0.56
44 14 0.14
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATTA
Found at i:62880860 original size:85 final size:85
Alignment explanation
Indices: 62880707--62880872 Score: 196
Period size: 85 Copynumber: 2.0 Consensus size: 85
62880697 TCCGATATCT
* * * *
62880707 TTTCGTGTAAGACCACGTTGGGATGTTGGCATCAATTTATGATTTACGTGTAAGACCATGTATGG
1 TTTCGTGTAAGACCACGTTGGGAAGTTGGCATCAATTTATGATTTACATGTAAGACCACGTATAG
62880772 GACATCGGCATCGTATTTGA
66 GACATCGGCATCGTATTTGA
*
62880792 TTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATT-TGA-TTACATGTAAGACCACGT
1 TTTCGTGTAAGACCAC-GT-TGGGA-AGTTGGCATCAAT-TTATGATTTACATGTAAGACCACGT
* * *
62880853 CTAGGACATTGGCATTGTAT
62 ATAGGACATCGGCATCGTAT
62880873 GAGCTTTCCG
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
84 1 0.01
85 48 0.70
86 17 0.25
87 3 0.04
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (85 bp):
TTTCGTGTAAGACCACGTTGGGAAGTTGGCATCAATTTATGATTTACATGTAAGACCACGTATAG
GACATCGGCATCGTATTTGA
Found at i:62885191 original size:43 final size:42
Alignment explanation
Indices: 62885144--62885280 Score: 127
Period size: 43 Copynumber: 3.2 Consensus size: 42
62885134 TCCCAAACTT
* *
62885144 GGTCTTACATGTAATCAAATATCGATGCCACCGTCCCAGATAG
1 GGTCTTACACGTAATCAAATATCGATGCCA-CGTCCCAGACAG
* * * *
62885187 GGTCTTACACGAAATCAAATAT-GATGCTGATGTCCCAGACAT
1 GGTCTTACACGTAATCAAATATCGATGC-CACGTCCCAGACAG
* *
62885229 GGTCTTACGCGTAAATCACAA-ATCGATGCCAACGTCCCTGAC-G
1 GGTCTTACACGT-AATCA-AATATCGATGCC-ACGTCCCAGACAG
62885272 TGGTCTTAC
1 -GGTCTTAC
62885281 TCGAAAACAC
Statistics
Matches: 76, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
42 24 0.32
43 28 0.37
44 24 0.32
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (42 bp):
GGTCTTACACGTAATCAAATATCGATGCCACGTCCCAGACAG
Found at i:62885669 original size:8 final size:8
Alignment explanation
Indices: 62885656--62885680 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
62885646 AAATTAGCCC
62885656 TCACATTT
1 TCACATTT
62885664 TCACATTT
1 TCACATTT
62885672 TCACATTT
1 TCACATTT
62885680 T
1 T
62885681 AACACTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (8 bp):
TCACATTT
Found at i:62888242 original size:27 final size:27
Alignment explanation
Indices: 62888212--62888389 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
62888202 ATATTGAGTC
* * * *
62888212 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
62888239 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62888266 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
62888294 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
62888321 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
62888348 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62888375 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62888390 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:62888351 original size:82 final size:81
Alignment explanation
Indices: 62888233--62888388 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62888223 TGCTATATAA
* *
62888233 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
62888298 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
62888315 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
62888379 CACTTAGTGC
65 CACTTAGTGC
62888389 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:62905556 original size:13 final size:13
Alignment explanation
Indices: 62905540--62905572 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
62905530 TTTAATTAAA
*
62905540 TTAGTTAATTAGT
1 TTAGATAATTAGT
62905553 TTAGATAATTAGT
1 TTAGATAATTAGT
62905566 TTA-ATAA
1 TTAGATAA
62905573 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:62910982 original size:6 final size:6
Alignment explanation
Indices: 62910960--62911011 Score: 65
Period size: 6 Copynumber: 9.0 Consensus size: 6
62910950 TCCTCCTATC
*
62910960 TTTTTA TTCTTA TTTTT- TATTTTA -TTTTA -TTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA T-TTTTA TTTTTA TTTTTA TTTTTA TTTTTA
62911006 TTTTTA
1 TTTTTA
62911012 CTTTCATTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
5 11 0.27
6 30 0.73
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:62910984 original size:5 final size:5
Alignment explanation
Indices: 62910974--62911040 Score: 57
Period size: 5 Copynumber: 12.8 Consensus size: 5
62910964 TATTCTTATT
* *
62910974 TTTTA TTTTA TTTTA TTTTA TTTTTA TTTTTA TTTTTA CTTTCA TTTCAA
1 TTTTA TTTTA TTTTA TTTTA -TTTTA -TTTTA -TTTTA -TTTTA TTT-TA
62911024 TTTTA --TTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTT
62911041 GAAAGACATA
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
3 3 0.06
5 26 0.48
6 25 0.46
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:62910984 original size:12 final size:11
Alignment explanation
Indices: 62910960--62911040 Score: 74
Period size: 12 Copynumber: 6.9 Consensus size: 11
62910950 TCCTCCTATC
62910960 TTTTTATTCTTA
1 TTTTTATT-TTA
62910972 TTTTTTATTTTA
1 -TTTTTATTTTA
62910984 -TTTTATTTTA
1 TTTTTATTTTA
62910994 TTTTTATTTTTA
1 TTTTTA-TTTTA
*
62911006 TTTTTACTTTCA
1 TTTTTA-TTTTA
**
62911018 TTTCAATTTTA
1 TTTTTATTTTA
62911029 TTATTTTATTTT
1 -T-TTTTATTTT
62911041 GAAAGACATA
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
10 10 0.18
11 9 0.16
12 23 0.40
13 15 0.26
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:62911001 original size:28 final size:29
Alignment explanation
Indices: 62910961--62911040 Score: 92
Period size: 28 Copynumber: 2.8 Consensus size: 29
62910951 CCTCCTATCT
* *
62910961 TTTTATTCTTATTTTTTATTTTA-TTTTA
1 TTTTATTTTTATTTTTTATTTTACTTTCA
62910989 TTTTATTTTTA-TTTTTATTTTTACTTTCA
1 TTTTATTTTTATTTTTTA-TTTTACTTTCA
* *
62911018 TTTCAATTTTATTATTTTATTTT
1 TTTTATTTTTATT-TTTTATTTT
62911041 GAAAGACATA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
27 6 0.14
28 15 0.34
29 13 0.30
30 5 0.11
31 5 0.11
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (29 bp):
TTTTATTTTTATTTTTTATTTTACTTTCA
Found at i:62920480 original size:45 final size:44
Alignment explanation
Indices: 62920395--62920480 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 44
62920385 TATGTAATCT
**
62920395 GAACTCATTGAGTTGTGTCTGAGTTCATGATACATATGACATCC
1 GAACTCATTGAGTTGTGTCAAAGTTCATGATACATATGACATCC
* **
62920439 GAACTCATTGAGTTGTGGTCAAAGTTCGTGATATGTATGACA
1 GAACTCATTGAGTTGT-GTCAAAGTTCATGATACATATGACA
62920481 CATGTTTTGG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 16 0.44
45 20 0.56
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (44 bp):
GAACTCATTGAGTTGTGTCAAAGTTCATGATACATATGACATCC
Found at i:62922239 original size:173 final size:173
Alignment explanation
Indices: 62921950--62922300 Score: 684
Period size: 173 Copynumber: 2.0 Consensus size: 173
62921940 AAAGTTTACC
*
62921950 TATACATATTTATTTTTTTTCGAATAGCTATCAAATCCACATACCCATATACCAAATATACCTCT
1 TATACATATTTATTTATTTTCGAATAGCTATCAAATCCACATACCCATATACCAAATATACCTCT
62922015 TATAAATAACATCCATTTTAATTTACAAATGCATTACATGTTATAACACAATACGCATCCATCTA
66 TATAAATAACATCCATTTTAATTTACAAATGCATTACATGTTATAACACAATACGCATCCATCTA
62922080 TTTCTCTATAATTGAAACACATGATTAAACACCATCATATATA
131 TTTCTCTATAATTGAAACACATGATTAAACACCATCATATATA
62922123 TATACATATTTATTTATTTTCGAATAGCTATCAAATCCACATACCCATATACCAAATATACCTCT
1 TATACATATTTATTTATTTTCGAATAGCTATCAAATCCACATACCCATATACCAAATATACCTCT
*
62922188 TATAAATAACATCCATTTTAATTTACTAATGCATTACATGTTATAACACAATACGCATCCATCTA
66 TATAAATAACATCCATTTTAATTTACAAATGCATTACATGTTATAACACAATACGCATCCATCTA
62922253 TTTCTCTATAATTGAAACACATGATTAAACACCATCATATATA
131 TTTCTCTATAATTGAAACACATGATTAAACACCATCATATATA
62922296 TATAC
1 TATAC
62922301 CTAAAGATGA
Statistics
Matches: 176, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
173 176 1.00
ACGTcount: A:0.39, C:0.21, G:0.04, T:0.36
Consensus pattern (173 bp):
TATACATATTTATTTATTTTCGAATAGCTATCAAATCCACATACCCATATACCAAATATACCTCT
TATAAATAACATCCATTTTAATTTACAAATGCATTACATGTTATAACACAATACGCATCCATCTA
TTTCTCTATAATTGAAACACATGATTAAACACCATCATATATA
Found at i:62927293 original size:16 final size:16
Alignment explanation
Indices: 62927274--62927304 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
62927264 CTTCTTCACT
62927274 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
62927290 TACTTACTTACTTAA
1 TACTCACTTACTTAA
62927305 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:62927310 original size:20 final size:20
Alignment explanation
Indices: 62927271--62927310 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
62927261 AAACTTCTTC
* *
62927271 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
62927291 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
62927311 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:62927628 original size:53 final size:53
Alignment explanation
Indices: 62927496--62927745 Score: 242
Period size: 55 Copynumber: 4.7 Consensus size: 53
62927486 ACACGGATAC
* ** * *
62927496 CTTACCATTGCCATGAATTGTCATGGTCTTACATGGTA---T-CCTTTTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATGAAA
* *
62927545 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATGAAA
* * * *
62927598 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTAT-GAAA
* * * *
62927653 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATGAAA
* * *
62927706 CCTTACCAATTGCCATGCCTAGGCATGGTCTTACACGGTA
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA
62927746 TCCTGAAACC
Statistics
Matches: 166, Mismatches: 24, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
49 35 0.21
52 2 0.01
53 48 0.29
54 15 0.09
55 64 0.39
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATGAAA
Found at i:62927687 original size:108 final size:110
Alignment explanation
Indices: 62927543--62927740 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
62927533 ATCCTTTTGA
* *
62927543 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
*
62927606 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTAGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
62927651 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
62927716 TGCCATGCCTAGGCATGGTCTTACA
66 TGCCATGCCTAGGCATGGTCTTACA
62927741 CGGTATCCTG
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.60
109 7 0.09
110 24 0.30
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTAGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:62936460 original size:25 final size:25
Alignment explanation
Indices: 62936422--62936474 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
62936412 CCAGTGTAAG
*
62936422 ACCATGTCTAGGACATGGCATTGGC
1 ACCATGTCTAGGACATGGCATCGGC
*
62936447 ACCATGTCTGGGACATGGCATCGGC
1 ACCATGTCTAGGACATGGCATCGGC
62936472 ACC
1 ACC
62936475 TTACCCATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (25 bp):
ACCATGTCTAGGACATGGCATCGGC
Found at i:62942415 original size:42 final size:43
Alignment explanation
Indices: 62942356--62942479 Score: 141
Period size: 42 Copynumber: 2.9 Consensus size: 43
62942346 ATGTTATCAA
*
62942356 ATAT-CGATGCCACTGTCCCAGACAAGGTCTTACACGA-AATC
1 ATATACGATGCCAATGTCCCAGACAAGGTCTTACACGATAATC
62942397 ATATACGATGCCAATGTCCCAGACATA-GTCTTACAC-ATAATC
1 ATATACGATGCCAATGTCCCAGACA-AGGTCTTACACGATAATC
* * * *
62942439 -TCAAATCGATTCCAATGCCCCAGACATGGTCTTACACGATA
1 AT-ATA-CGATGCCAATGTCCCAGACAAGGTCTTACACGATA
62942480 TTACATCTCG
Statistics
Matches: 71, Mismatches: 5, Indels: 11
0.82 0.06 0.13
Matches are distributed among these distances:
41 6 0.08
42 34 0.48
43 28 0.39
44 3 0.04
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (43 bp):
ATATACGATGCCAATGTCCCAGACAAGGTCTTACACGATAATC
Found at i:62949231 original size:46 final size:46
Alignment explanation
Indices: 62949063--62949238 Score: 151
Period size: 46 Copynumber: 3.8 Consensus size: 46
62949053 TGTAACCCGC
* * * * *
62949063 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGAAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* * * * * *
62949109 CCATAGGTGAAGTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* * *
62949159 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
62949202 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
62949239 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 23, Indels: 14
0.73 0.17 0.10
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 58 0.58
47 28 0.28
48 1 0.01
49 1 0.01
50 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:62949231 original size:93 final size:93
Alignment explanation
Indices: 62949072--62949241 Score: 259
Period size: 93 Copynumber: 1.8 Consensus size: 93
62949062 CCCATAAGCA
* * * * *
62949072 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGAATCCATAGGTGAAGTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGAATCCATAAGTGAACTCAGACTCAACTCAAC
*
62949137 GAGTTCGGATGCCTAGTTACATTTCACG
66 GAGCTCGGATGCCTAGTTACATTTCACG
* * *
62949165 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGAATCCATAAGTGAACTCAGACTCAACTCAAC
62949230 GAGCTCGGATGC
66 GAGCTCGGATGC
62949242 TCAACCATCC
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGAATCCATAAGTGAACTCAGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATTTCACG
Found at i:62952763 original size:33 final size:34
Alignment explanation
Indices: 62952726--62952789 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
62952716 AAGGAAAGAA
62952726 TGAGGT-AAAA-ACAAGAGAGAAAAACAAAGAGTG
1 TGAGGTAAAAACACAAGAG-GAAAAACAAAGAGTG
*
62952759 TGAGGTAAAAACACAAGAGGAAAAAGAAAGA
1 TGAGGTAAAAACACAAGAGGAAAAACAAAGA
62952790 AAATGAGAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 6 0.21
34 15 0.54
35 7 0.25
ACGTcount: A:0.59, C:0.06, G:0.27, T:0.08
Consensus pattern (34 bp):
TGAGGTAAAAACACAAGAGGAAAAACAAAGAGTG
Found at i:62954778 original size:41 final size:43
Alignment explanation
Indices: 62954727--62954874 Score: 144
Period size: 43 Copynumber: 3.5 Consensus size: 43
62954717 TATCCTAGAT
*
62954727 ATGGTCTTACATGTTATCACATATCGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGAC
* * * * *
62954770 AT-G-CTTACAGGAAATCATATAAT-GATTCC-ATGTCCTAGAC
1 ATGGTCTTACATGTAATCACAT-ATCGATGCCAATGTCCCAGAC
* * * *
62954810 ATGGTATTACACGTAATCACA-ATACAATGCCAATATCCCAGAC
1 ATGGTCTTACATGTAATCACATAT-CGATGCCAATGTCCCAGAC
*
62954853 ATGGTCTTACATGTAATTACAT
1 ATGGTCTTACATGTAATCACAT
62954875 CTCAGTAATC
Statistics
Matches: 81, Mismatches: 17, Indels: 13
0.73 0.15 0.12
Matches are distributed among these distances:
40 14 0.17
41 19 0.23
42 19 0.23
43 29 0.36
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGAC
Found at i:62954863 original size:43 final size:41
Alignment explanation
Indices: 62954705--62954874 Score: 139
Period size: 43 Copynumber: 4.1 Consensus size: 41
62954695 TCATATAACT
* * *
62954705 CATACAATGCCATATCCTAGATATGGTCTTACATGTTATCA
1 CATACAATGCCATATCCCAGACATGGTCTTACATGTAATCA
* * * *
62954746 CATATCGATGCCAATGTCCCAGACAT-G-CTTACAGGAAATCA
1 CATA-CAATGCC-ATATCCCAGACATGGTCTTACATGTAATCA
* * * * * *
62954787 TATA-ATGATTCCATGTCCTAGACATGGTATTACACGTAATCA
1 CATACA--ATGCCATATCCCAGACATGGTCTTACATGTAATCA
*
62954829 CAATACAATGCCAATATCCCAGACATGGTCTTACATGTAATTA
1 C-ATACAATGCC-ATATCCCAGACATGGTCTTACATGTAATCA
62954872 CAT
1 CAT
62954875 CTCAGTAATC
Statistics
Matches: 99, Mismatches: 21, Indels: 17
0.72 0.15 0.12
Matches are distributed among these distances:
40 12 0.12
41 23 0.23
42 24 0.24
43 39 0.39
44 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (41 bp):
CATACAATGCCATATCCCAGACATGGTCTTACATGTAATCA
Found at i:62963504 original size:43 final size:42
Alignment explanation
Indices: 62963438--62963549 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 42
62963428 ACATATCGAC
* * * *
62963438 GCCACTGTCCCAGACAGGGTCTTACACGAAATCGATTAAT-GAT
1 GCCAATGTCCCAGACATGGTCTTACACGAAATC--TAAATAAAT
*
62963481 GCCAATGTCCCAGACATGGTCTTACACGTAATCTAAATACAAT
1 GCCAATGTCCCAGACATGGTCTTACACGAAATCTAAATA-AAT
* *
62963524 GCCAATGTCCCAAACATAGTCTTACA
1 GCCAATGTCCCAGACATGGTCTTACA
62963550 TGTAATCACA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
41 4 0.07
43 56 0.93
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (42 bp):
GCCAATGTCCCAGACATGGTCTTACACGAAATCTAAATAAAT
Found at i:62967658 original size:26 final size:26
Alignment explanation
Indices: 62967622--62967673 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
62967612 GTAACCCGCC
*
62967622 CATAAGCGAACTCGGACTCAACTCAA
1 CATAAGCGAACTCAGACTCAACTCAA
* *
62967648 CATAAGTGAACTCAGACTCCACTCAA
1 CATAAGCGAACTCAGACTCAACTCAA
62967674 TGAGCTCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.31, G:0.13, T:0.17
Consensus pattern (26 bp):
CATAAGCGAACTCAGACTCAACTCAA
Found at i:62967760 original size:46 final size:46
Alignment explanation
Indices: 62967702--62967869 Score: 150
Period size: 46 Copynumber: 3.6 Consensus size: 46
62967692 TACATCTCAC
62967702 GAACTCAGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGT
1 GAACTCAGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGT
* * * * * *
62967748 GAACTC-GAACTCAACTCAACAAGCTCGGATACCCAGTT-ACAT-C-TCA-C
1 GAACTCAG-ACTCAACTCAACGAGTTC--AGA--CA-TTCGCATCCATAAGT
* * *
62967795 GAACTC-GAACTCAACTCAACGAGTTCGGACGTTCGCATCTATAAGT
1 GAACTCAG-ACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGT
62967841 GAACTCAGACTCAACTCAACGAGTTCAGA
1 GAACTCAGACTCAACTCAACGAGTTCAGA
62967870 TGCCCAAATA
Statistics
Matches: 95, Mismatches: 16, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 4 0.04
46 48 0.51
47 25 0.26
48 4 0.04
49 1 0.01
50 5 0.05
51 2 0.02
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (46 bp):
GAACTCAGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGT
Found at i:62967807 original size:93 final size:93
Alignment explanation
Indices: 62967648--62967860 Score: 322
Period size: 93 Copynumber: 2.3 Consensus size: 93
62967638 CTCAACTCAA
* ** * *
62967648 CATAAGTGAACTCAGACTCCACTCAATGAGCTCGGATGCCTAGTTACATCTCACGAACTCAGACT
1 CATAAGTGAACTCAGACTCAACTCAACAAGCTCGGATACCCAGTTACATCTCACGAACTCAGACT
62967713 CAACTCAACGAGTTCAGACATTCGCATC
66 CAACTCAACGAGTTCAGACATTCGCATC
62967741 CATAAGTGAACTC-GAACTCAACTCAACAAGCTCGGATACCCAGTTACATCTCACGAACTC-GAA
1 CATAAGTGAACTCAG-ACTCAACTCAACAAGCTCGGATACCCAGTTACATCTCACGAACTCAG-A
* *
62967804 CTCAACTCAACGAGTTCGGACGTTCGCATC
64 CTCAACTCAACGAGTTCAGACATTCGCATC
*
62967834 TATAAGTGAACTCAGACTCAACTCAAC
1 CATAAGTGAACTCAGACTCAACTCAAC
62967861 GAGTTCAGAT
Statistics
Matches: 109, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
92 2 0.02
93 106 0.97
94 1 0.01
ACGTcount: A:0.33, C:0.30, G:0.15, T:0.22
Consensus pattern (93 bp):
CATAAGTGAACTCAGACTCAACTCAACAAGCTCGGATACCCAGTTACATCTCACGAACTCAGACT
CAACTCAACGAGTTCAGACATTCGCATC
Found at i:62972922 original size:27 final size:27
Alignment explanation
Indices: 62972884--62972936 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
62972874 TTACCTAGAC
*
62972884 CCTCTAATTGAT-AAGATGACTATTATA
1 CCTCTAATTGATGAA-ATAACTATTATA
62972911 CCTCT-ATGTGATGAAATAACTATTAT
1 CCTCTAAT-TGATGAAATAACTATTAT
62972937 GCCCCTGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 2 0.09
27 19 0.83
28 2 0.09
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (27 bp):
CCTCTAATTGATGAAATAACTATTATA
Found at i:62975633 original size:40 final size:40
Alignment explanation
Indices: 62975578--62975844 Score: 471
Period size: 40 Copynumber: 6.7 Consensus size: 40
62975568 AGCATTGGAT
62975578 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
62975618 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
62975658 TATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
62975698 TATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
62975738 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
62975778 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
62975818 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
62975845 ATGTGTTTGC
Statistics
Matches: 219, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 219 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:62989460 original size:129 final size:129
Alignment explanation
Indices: 62989230--62989488 Score: 455
Period size: 129 Copynumber: 2.0 Consensus size: 129
62989220 AGCTTAATCA
* * ** *
62989230 TACATAGTACGTGGAGTAGGATTTTGATTAGCCGCAATTGCGGGAGGTAGCTGATTGCCTTGGTT
1 TACATAGTACGTGGAGCAGGATTTTGATTAGCCGCAATTACAAGAGGTAGCTAATTGCCTTGGTT
* *
62989295 TTTAGCCATCTCTTCGGTTGGGGTTGAGTATCGTCTTCTTGCTTGTTCTCTGTGTATCTTAAGC
66 TTCAGCCATCTCTTCGGTTGGGGTTGAGTATCGTCTTCTTGCTCGTTCTCTGTGTATCTTAAGC
62989359 TACATAGTACGTGGAGCAGGATTTTGATTAGCCGCAATTACAAGAGGTAGCTAATTGCCTTGGTT
1 TACATAGTACGTGGAGCAGGATTTTGATTAGCCGCAATTACAAGAGGTAGCTAATTGCCTTGGTT
62989424 TTCAGCCATCTCTTCGGTTGGGGTTGAGTATCGTCTTCTTGCTCGTTCTCTGTGTATCTTAAGC
66 TTCAGCCATCTCTTCGGTTGGGGTTGAGTATCGTCTTCTTGCTCGTTCTCTGTGTATCTTAAGC
62989488 T
1 T
62989489 TCGCCTTATT
Statistics
Matches: 123, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
129 123 1.00
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.38
Consensus pattern (129 bp):
TACATAGTACGTGGAGCAGGATTTTGATTAGCCGCAATTACAAGAGGTAGCTAATTGCCTTGGTT
TTCAGCCATCTCTTCGGTTGGGGTTGAGTATCGTCTTCTTGCTCGTTCTCTGTGTATCTTAAGC
Found at i:62997448 original size:130 final size:130
Alignment explanation
Indices: 62997215--62997475 Score: 459
Period size: 130 Copynumber: 2.0 Consensus size: 130
62997205 AATAAGGCGA
* *
62997215 AGCTTAAGATACACAGAGAACGAGCAAGAAGACGATACTCAACCCCCAACCGAAGAGATGGCTGA
1 AGCTTAAGATACACAGAGAACAAGCAAGAAGACGATACTCAACCCCCAACCGAAGAGATGGCTAA
* ** * *
62997280 AAACCAAGGCAATTAGCTACCTCTTGTAATTGCGGCTAATCAAAATCCTGCTCCACGTACTATGT
66 AAACCAAGGCAATCAGCTACCTCCCGCAATTGCGGCTAATCAAAATCCTACTCCACGTACTATGT
62997345 AGCTTAAGATACACAGAGAACAAGCAAGAAGACGATACTCAACCCCCAACCGAAGAGATGGCTAA
1 AGCTTAAGATACACAGAGAACAAGCAAGAAGACGATACTCAACCCCCAACCGAAGAGATGGCTAA
62997410 AAACCAAGGCAATCAGCTACCTCCCGCAATTGCGGCTAATCAAAATCCTACTCCACGTACTATGT
66 AAACCAAGGCAATCAGCTACCTCCCGCAATTGCGGCTAATCAAAATCCTACTCCACGTACTATGT
62997475 A
1 A
62997476 TGATTAAGCT
Statistics
Matches: 124, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
130 124 1.00
ACGTcount: A:0.38, C:0.27, G:0.18, T:0.18
Consensus pattern (130 bp):
AGCTTAAGATACACAGAGAACAAGCAAGAAGACGATACTCAACCCCCAACCGAAGAGATGGCTAA
AAACCAAGGCAATCAGCTACCTCCCGCAATTGCGGCTAATCAAAATCCTACTCCACGTACTATGT
Found at i:63008062 original size:17 final size:17
Alignment explanation
Indices: 63008036--63008123 Score: 110
Period size: 17 Copynumber: 5.2 Consensus size: 17
63008026 ATTATGTTTA
63008036 ATTTTATTTTGTA--TTT
1 ATTTTATTTT-TATTTTT
63008052 ATTTTATTTTTATTTTT
1 ATTTTATTTTTATTTTT
63008069 ATTTTATTTTTATTTTT
1 ATTTTATTTTTATTTTT
* *
63008086 ATTTTTATTGTCATTTTT
1 A-TTTTATTTTTATTTTT
63008104 ATTTTA-TTTTATGTTTT
1 ATTTTATTTTTAT-TTTT
63008121 ATT
1 ATT
63008124 AATTTCACCC
Statistics
Matches: 64, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
15 2 0.03
16 14 0.22
17 33 0.52
18 15 0.23
ACGTcount: A:0.18, C:0.01, G:0.03, T:0.77
Consensus pattern (17 bp):
ATTTTATTTTTATTTTT
Found at i:63008064 original size:6 final size:6
Alignment explanation
Indices: 63008027--63008123 Score: 98
Period size: 6 Copynumber: 16.8 Consensus size: 6
63008017 CCGGCGATGA
* *
63008027 TTATGT TTAATT TTATTT TGTA--T TTA-TT TTATTT TTATTT TTA-TT
1 TTATTT TTATTT TTATTT T-TATTT TTATTT TTATTT TTATTT TTATTT
* *
63008072 TTATTT TTATTT TTATTT TTATTG TCATTT TTA-TT TTA-TT TTATGTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTAT-TT
63008119 TTATT
1 TTATT
63008124 AATTTCACCC
Statistics
Matches: 78, Mismatches: 7, Indels: 12
0.80 0.07 0.12
Matches are distributed among these distances:
4 2 0.03
5 21 0.27
6 47 0.60
7 8 0.10
ACGTcount: A:0.19, C:0.01, G:0.04, T:0.76
Consensus pattern (6 bp):
TTATTT
Found at i:63026770 original size:73 final size:73
Alignment explanation
Indices: 63026646--63026787 Score: 221
Period size: 73 Copynumber: 1.9 Consensus size: 73
63026636 TGCTCTTGAG
* * * *
63026646 GTTCTTTGGTGCTTGGAGGCCGAATGTTGTTAGGGTTCCTTCTGGGCATCTTTCTGTTTTGCCTA
1 GTTCTTTGCTGCTTGGAGGCCGAATGTTGTTAGGGTTCCTTCTGGGCATCTTTCTATTTTACCAA
63026711 TTTCGACT
66 TTTCGACT
* * *
63026719 GTTCTTTGCTGCTTGGAGGCCGAATGTTGTTGGGGTTCCTTTTGGGTATCTTTCTATTTTACCAA
1 GTTCTTTGCTGCTTGGAGGCCGAATGTTGTTAGGGTTCCTTCTGGGCATCTTTCTATTTTACCAA
63026784 TTTC
66 TTTC
63026788 AACTTTGGCA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
73 62 1.00
ACGTcount: A:0.11, C:0.18, G:0.26, T:0.45
Consensus pattern (73 bp):
GTTCTTTGCTGCTTGGAGGCCGAATGTTGTTAGGGTTCCTTCTGGGCATCTTTCTATTTTACCAA
TTTCGACT
Found at i:63028165 original size:27 final size:27
Alignment explanation
Indices: 63028134--63028191 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
63028124 ACCCTCTAAT
63028134 TGATAAAATAACTATTATGCCCCTATG
1 TGATAAAATAACTATTATGCCCCTATG
*
63028161 TGATAAAATGACTATTATGCCCCTATG
1 TGATAAAATAACTATTATGCCCCTATG
63028188 TGAT
1 TGAT
63028192 GTATGACTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (27 bp):
TGATAAAATAACTATTATGCCCCTATG
Found at i:63029435 original size:27 final size:27
Alignment explanation
Indices: 63029387--63029545 Score: 155
Period size: 27 Copynumber: 5.9 Consensus size: 27
63029377 GCGAGGCTGC
** * *
63029387 CAGATATTGTCACGGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
63029414 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* * *
63029440 CAAATATACGTGGTAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
63029467 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
63029494 CATATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
63029521 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
63029546 GACGCTTCCT
Statistics
Matches: 108, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
26 9 0.08
27 95 0.88
28 4 0.04
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:63029546 original size:54 final size:54
Alignment explanation
Indices: 63029405--63029548 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
63029395 GTCACGGAGT
* * *
63029405 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAAATATACGTGGTAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAAATATACGTGGCAGAGC
* *
63029459 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACATATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAAATATACGTGGCAGAGC
63029513 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
63029549 GCTTCCTCCA
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 79 0.94
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAAATATACGTGGCAGAGC
Found at i:63031196 original size:26 final size:26
Alignment explanation
Indices: 63031165--63031272 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
63031155 TGAAATGCCC
* *
63031165 ATCATGGAACATTTACTTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
63031191 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
63031217 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
63031243 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
63031269 ATCA
1 ATCA
63031273 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:63034569 original size:46 final size:45
Alignment explanation
Indices: 63034460--63034597 Score: 178
Period size: 46 Copynumber: 3.1 Consensus size: 45
63034450 TGGCTCTCAC
63034460 ACATC-CGT-GCCGATGCATGTCCCAGACATGTCTTACACTAGC-
1 ACATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCT
* *
63034502 ACATCTCGTAGCCGATGCATGTCCCA-AGCATGTATTACACTGGCTT
1 ACATCTCGTAGCCGATGCATGTCCCAGA-CATGTCTTACACTAGC-T
*
63034548 ACATCTCG-AGGCTGATGCATGTCCCAGACATGTCTTACACTAGCT
1 ACATCTCGTA-GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
63034593 CACAT
1 -ACAT
63034598 AACAACAGTG
Statistics
Matches: 83, Mismatches: 5, Indels: 12
0.83 0.05 0.12
Matches are distributed among these distances:
42 5 0.06
43 4 0.05
44 30 0.36
45 2 0.02
46 41 0.49
47 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (45 bp):
ACATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCT
Found at i:63034832 original size:30 final size:28
Alignment explanation
Indices: 63034791--63034848 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 28
63034781 ATTTCATAAA
63034791 TATGATTTTGCCCCTAAACTTCGTCAAAAT
1 TATGATTTTGCCCCTAAACTT-GT-AAAAT
*
63034821 TATGTTTTTGCCCCTAAACTTGTAAAAT
1 TATGATTTTGCCCCTAAACTTGTAAAAT
63034849 GATTTTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 5 0.19
29 2 0.07
30 20 0.74
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (28 bp):
TATGATTTTGCCCCTAAACTTGTAAAAT
Found at i:63037512 original size:40 final size:40
Alignment explanation
Indices: 63037414--63037716 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
63037404 TCCTCGTTCA
* * * * *
63037414 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
63037453 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
63037493 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
63037533 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
63037573 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
63037613 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
63037653 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
63037693 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
63037717 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:63051512 original size:130 final size:130
Alignment explanation
Indices: 63051279--63051539 Score: 459
Period size: 130 Copynumber: 2.0 Consensus size: 130
63051269 AATAAGGCGA
* *
63051279 AGCTTAAGATACACAGAGAACGAGCAAGAAGACGATACTCAACCCCCAACCGAAGAGATGGCTGA
1 AGCTTAAGATACACAGAGAACAAGCAAGAAGACGATACTCAACCCCCAACCGAAGAGATGGCTAA
* ** * *
63051344 AAACCAAGGCAATTAGCTACCTCTTGTAATTGCGGCTAATCAAAATCCTGCTCCACGTACTATGT
66 AAACCAAGGCAATCAGCTACCTCCCGCAATTGCGGCTAATCAAAATCCTACTCCACGTACTATGT
63051409 AGCTTAAGATACACAGAGAACAAGCAAGAAGACGATACTCAACCCCCAACCGAAGAGATGGCTAA
1 AGCTTAAGATACACAGAGAACAAGCAAGAAGACGATACTCAACCCCCAACCGAAGAGATGGCTAA
63051474 AAACCAAGGCAATCAGCTACCTCCCGCAATTGCGGCTAATCAAAATCCTACTCCACGTACTATGT
66 AAACCAAGGCAATCAGCTACCTCCCGCAATTGCGGCTAATCAAAATCCTACTCCACGTACTATGT
63051539 A
1 A
63051540 TGATTAAGCT
Statistics
Matches: 124, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
130 124 1.00
ACGTcount: A:0.38, C:0.27, G:0.18, T:0.18
Consensus pattern (130 bp):
AGCTTAAGATACACAGAGAACAAGCAAGAAGACGATACTCAACCCCCAACCGAAGAGATGGCTAA
AAACCAAGGCAATCAGCTACCTCCCGCAATTGCGGCTAATCAAAATCCTACTCCACGTACTATGT
Found at i:63062106 original size:11 final size:10
Alignment explanation
Indices: 63062090--63062160 Score: 62
Period size: 9 Copynumber: 7.3 Consensus size: 10
63062080 TATGTTTAAT
63062090 TTTATTTTGTA
1 TTTATTTT-TA
63062101 TTTA-TTTTA
1 TTTATTTTTA
*
63062110 TTT-TTATT-
1 TTTATTTTTA
63062118 TTTATTTTTA
1 TTTATTTTTA
*
63062128 TTT-TTATT-
1 TTTATTTTTA
63062136 TTTATTTTTA
1 TTTATTTTTA
63062146 TTGTCATTTTTA
1 TT-T-ATTTTTA
63062158 TTT
1 TTT
63062161 TTATTTTATG
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
8 6 0.12
9 20 0.41
10 8 0.16
11 6 0.12
12 9 0.18
ACGTcount: A:0.17, C:0.01, G:0.03, T:0.79
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:63062116 original size:6 final size:6
Alignment explanation
Indices: 63062079--63062178 Score: 116
Period size: 6 Copynumber: 16.8 Consensus size: 6
63062069 CCGGCGATGA
* *
63062079 TTATGT TTAATT TTATTT TGTA--T TTA-TT TTATTT TTATTT TTATTT
1 TTATTT TTATTT TTATTT T-TATTT TTATTT TTATTT TTATTT TTATTT
* * *
63062125 TTATTT TTATTT TTATTT TTATTG TCATTT TTATTT TTATTT TATGTTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT T-TATTT
63062174 TTATT
1 TTATT
63062179 AATTTCACCC
Statistics
Matches: 81, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
4 2 0.02
5 6 0.07
6 66 0.81
7 7 0.09
ACGTcount: A:0.18, C:0.01, G:0.04, T:0.77
Consensus pattern (6 bp):
TTATTT
Found at i:63065108 original size:40 final size:40
Alignment explanation
Indices: 63065040--63065216 Score: 259
Period size: 40 Copynumber: 4.5 Consensus size: 40
63065030 ACCCAAGTAT
* *
63065040 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACCAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * * *
63065079 CTTCAGGTCCTAGCCCGGATACAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
63065119 CTTTGGGTCTTAGCCCGGATATAGCAACTCGCACCAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
63065159 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
63065199 CTTCGGGTCTTAGCCCGG
1 CTTCGGGTCTTAGCCCGG
63065217 TTATCATCCG
Statistics
Matches: 122, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 1 0.01
39 9 0.07
40 112 0.92
ACGTcount: A:0.24, C:0.31, G:0.23, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:63074033 original size:5 final size:5
Alignment explanation
Indices: 63074023--63074047 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
63074013 TGGCTCATTT
63074023 CTGTC CTGTC CTGTC CTGTC CTGTC
1 CTGTC CTGTC CTGTC CTGTC CTGTC
63074048 AACCCCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.20, T:0.40
Consensus pattern (5 bp):
CTGTC
Found at i:63074562 original size:18 final size:18
Alignment explanation
Indices: 63074539--63074576 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
63074529 TATGACTAAT
63074539 AGGTATTTTTACCGATTA
1 AGGTATTTTTACCGATTA
*
63074557 AGGTATTTTTATCGATTA
1 AGGTATTTTTACCGATTA
63074575 AG
1 AG
63074577 CCCTTTTACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.45
Consensus pattern (18 bp):
AGGTATTTTTACCGATTA
Found at i:63088438 original size:43 final size:43
Alignment explanation
Indices: 63088324--63088431 Score: 135
Period size: 43 Copynumber: 2.5 Consensus size: 43
63088314 GATTAACGAG
* * * *
63088324 ATGTGATTATGCGTAAGACCATGTTTGGGACATTGGAATCATT
1 ATGTGATTACGTGTAACACCATGTCTGGGACATTGGAATCATT
* * *
63088367 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
1 ATGTGATTACGTGTAACACCATGTCTGGGACATTGGAATCATT
* *
63088410 ATTTGATTTCGTGTAACACCAT
1 ATGTGATTACGTGTAACACCAT
63088432 AGCTGGGCTA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (43 bp):
ATGTGATTACGTGTAACACCATGTCTGGGACATTGGAATCATT
Found at i:63091585 original size:43 final size:42
Alignment explanation
Indices: 63091516--63091639 Score: 115
Period size: 43 Copynumber: 2.9 Consensus size: 42
63091506 AGCTCATACA
** * * *
63091516 ATGCCATATCCCAGGTATGGTATTACATGTTATCACATATTG
1 ATGCCATATCCCAGACATGGTCTTACATGTAATCACATAATG
* * * * *
63091558 ATGCCACTATCCCAGACAGGGTCTTACACGAAATTGA-TTAATG
1 ATGCCA-TATCCCAGACATGGTCTTACATGTAA-TCACATAATG
*
63091601 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
1 ATGCC-ATATCCCAGACATGGTCTTACATGTAATCACAT
63091640 CTCGGTAACC
Statistics
Matches: 62, Mismatches: 16, Indels: 7
0.73 0.19 0.08
Matches are distributed among these distances:
42 8 0.13
43 51 0.82
44 3 0.05
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGACATGGTCTTACATGTAATCACATAATG
Found at i:63099931 original size:30 final size:30
Alignment explanation
Indices: 63099897--63099958 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
63099887 TCCTTAACTC
63099897 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
63099927 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
63099957 AA
1 AA
63099959 TCTCGGGAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:63107393 original size:27 final size:27
Alignment explanation
Indices: 63107376--63107499 Score: 149
Period size: 27 Copynumber: 4.6 Consensus size: 27
63107366 ATATTAAGTC
63107376 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
63107403 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
63107431 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * * *
63107458 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
*
63107485 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
63107500 GCACAATTTA
Statistics
Matches: 92, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
27 66 0.72
28 26 0.28
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:63107460 original size:55 final size:54
Alignment explanation
Indices: 63107376--63107499 Score: 194
Period size: 55 Copynumber: 2.3 Consensus size: 54
63107366 ATATTAAGTC
* *
63107376 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATC-AACT
* * *
63107431 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAACT
63107485 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63107500 GCACAATTTA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
54 18 0.28
55 46 0.72
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:63118453 original size:28 final size:29
Alignment explanation
Indices: 63118394--63118458 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 29
63118384 TTCATATTTA
63118394 TTTTA-CAATTTAACCCCTTAAATTGCAC
1 TTTTATCAATTTAACCCCTTAAATTGCAC
* * *
63118422 TTTTCTCAATTTAA-TCCTT-AATTGACAT
1 TTTTATCAATTTAACCCCTTAAATTG-CAC
63118450 TTTTATCAA
1 TTTTATCAA
63118459 AAATCACTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
27 5 0.16
28 18 0.58
29 8 0.26
ACGTcount: A:0.31, C:0.20, G:0.03, T:0.46
Consensus pattern (29 bp):
TTTTATCAATTTAACCCCTTAAATTGCAC
Found at i:63120279 original size:24 final size:22
Alignment explanation
Indices: 63120237--63120280 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
63120227 TTAAAGTGTA
63120237 AATATGAAAAATTTGAAGGGCT
1 AATATGAAAAATTTGAAGGGCT
*
63120259 AATAGTGAAAATATTTTAAGGG
1 AATA-TGAAAA-ATTTGAAGGG
63120281 TTGAAGGATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 6 0.32
24 9 0.47
ACGTcount: A:0.45, C:0.02, G:0.23, T:0.30
Consensus pattern (22 bp):
AATATGAAAAATTTGAAGGGCT
Found at i:63123411 original size:46 final size:46
Alignment explanation
Indices: 63123349--63123517 Score: 212
Period size: 47 Copynumber: 3.6 Consensus size: 46
63123339 ATATTTGAAT
* * *
63123349 TCCGAACTAGTTGAGTTGAGTCCGAGTTTGTGAGATATATCAGCCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATATATCAGACA
* * *
63123395 TCCAAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATATAATCTGACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATAT-ATCAGACA
* ** * * *
63123442 TCCGAACTCATTGAGTTGAGTTTGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATATATC-AGACA
63123489 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
63123518 ACTTATGGGA
Statistics
Matches: 103, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
46 36 0.35
47 67 0.65
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATATATCAGACA
Found at i:63132163 original size:22 final size:23
Alignment explanation
Indices: 63132117--63132164 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
63132107 TCACATGGCT
*
63132117 AAATTCATAACTCAAAATATACA
1 AAATTCAAAACTCAAAATATACA
63132140 AAATTCAAAAC-CAAACATAT-CA
1 AAATTCAAAACTCAAA-ATATACA
63132162 AAA
1 AAA
63132165 CTAGCATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.60, C:0.19, G:0.00, T:0.21
Consensus pattern (23 bp):
AAATTCAAAACTCAAAATATACA
Found at i:63139100 original size:40 final size:40
Alignment explanation
Indices: 63139056--63139279 Score: 244
Period size: 40 Copynumber: 5.7 Consensus size: 40
63139046 GCTCCTCGTT
* * *
63139056 CAAATGCATTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
63139096 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
63139136 CAAATGCCTTCGGG-CTTAGCCTGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * *
63139175 CAAATGCCTTC-AGATCTTAGTCCGGATAT-GTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTCGCA
* * * *
63139214 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
63139255 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63139280 CATCATTCAA
Statistics
Matches: 160, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
38 1 0.01
39 69 0.43
40 78 0.49
41 12 0.08
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:63139167 original size:79 final size:79
Alignment explanation
Indices: 63139077--63139279 Score: 227
Period size: 79 Copynumber: 2.6 Consensus size: 79
63139067 GGGACATAGC
* * *
63139077 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT-GTAACTCGCACAAATG
63139142 CCTTCGG-GCTTAG-
65 CCTTCGGAGCTTAGT
* * * *
63139155 CCTGGA-ATTAGTATCTCGCACAAATGCCTTC-AGATCTTAGTCCGGATATGTATCTCGCACAAA
1 CC-GGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGTAACTCGCACAAA
*
63139218 TGCCTTCGGATCTTAGT
63 TGCCTTCGGAGCTTAGT
* * *
63139235 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
63139280 CATCATTCAA
Statistics
Matches: 103, Mismatches: 14, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
78 27 0.26
79 63 0.61
80 13 0.13
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (79 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGTAACTCGCACAAATGC
CTTCGGAGCTTAGT
Found at i:63139177 original size:39 final size:38
Alignment explanation
Indices: 63139084--63139275 Score: 167
Period size: 39 Copynumber: 4.9 Consensus size: 38
63139074 AGCCCGGTTA
* *
63139084 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGG-CTT-AGCCGGAAT
63139124 TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCTGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGCTTAGCC-GGAAT
* **
63139163 TAGTATCTCGCACAAATGCCTTCAGATCTTAGTCCGG-A-
1 TAGTAACTCGCACAAATGCCTTC-GGGCTTAG-CCGGAAT
* *
63139201 TATGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG-AT
1 TA-GTAACTCGCACAAATGCCTTCGG-GCTTAG-CCGGAAT
* * *
63139241 ATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCC
1 -TAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCC
63139276 CGGACATCAT
Statistics
Matches: 132, Mismatches: 11, Indels: 19
0.81 0.07 0.12
Matches are distributed among these distances:
38 6 0.05
39 65 0.49
40 50 0.38
41 11 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (38 bp):
TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCGGAAT
Found at i:63147126 original size:79 final size:81
Alignment explanation
Indices: 63147024--63147208 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
63147014 GCTCCTCGTT
* *
63147024 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
63147087 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
63147104 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
63147168 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
63147184 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63147209 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:63147208 original size:40 final size:40
Alignment explanation
Indices: 63147024--63147208 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
63147014 GCTCCTCGTT
* *
63147024 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
63147064 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
63147104 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
63147143 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
63147184 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63147209 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:63155365 original size:22 final size:23
Alignment explanation
Indices: 63155339--63155386 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
63155329 TATAGGCTAG
*
63155339 TTTTGATATG-TTTG-GTTTTGAA
1 TTTTG-TATGTTTTGAGTTATGAA
63155361 TTTTGTATGTTTTGAGTTATGAA
1 TTTTGTATGTTTTGAGTTATGAA
63155384 TTT
1 TTT
63155387 AGCCATGTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 4 0.17
22 9 0.39
23 10 0.43
ACGTcount: A:0.19, C:0.00, G:0.21, T:0.60
Consensus pattern (23 bp):
TTTTGTATGTTTTGAGTTATGAA
Found at i:63156815 original size:43 final size:43
Alignment explanation
Indices: 63156722--63156888 Score: 135
Period size: 43 Copynumber: 3.9 Consensus size: 43
63156712 GGTCACTAAG
* * * * * ** *
63156722 ATGTAATTACACGTACGACCATGTTTGGGACATCGGGGTTG-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGAT
63156764 ATTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATC-ATT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGA-T
*** *
63156808 AAT-TGATTTTGTGTAAGACCCTGTCTGGGACATTGGCATCGAT
1 -ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGAT
* * * *
63156851 ATGTGATAACATATAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
63156889 TGTACGAGCT
Statistics
Matches: 99, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
42 9 0.09
43 86 0.87
44 3 0.03
45 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGAT
Found at i:63168483 original size:40 final size:40
Alignment explanation
Indices: 63168439--63168629 Score: 258
Period size: 40 Copynumber: 4.8 Consensus size: 40
63168429 GCCACTAGCT
* * **
63168439 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACA
63168479 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACA
* * * *
63168518 CAAATGCCTTCGAGACTTAGCCCCGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACA
* * *
63168558 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACA
* *
63168598 CGAATGCCTTCGGGACTTAGCCCGGTTATAAT
1 CAAATGCCTTCGGGACTTAGCCCGGATATAAT
63168630 CCGAACATTC
Statistics
Matches: 134, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
39 34 0.25
40 100 0.75
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACA
Found at i:63168537 original size:79 final size:80
Alignment explanation
Indices: 63168439--63168629 Score: 285
Period size: 79 Copynumber: 2.4 Consensus size: 80
63168429 GCCACTAGCT
* * *
63168439 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
63168504 -TATAATAACTCACA
66 ATATAATAACTCACA
* * * *
63168518 CAAATGCCTTCGAGACTTAGCCCCGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
63168583 ATATAGTAGCTCACA
66 ATATAATAACTCACA
*
63168598 CGAATGCCTTCGGGACTTAGCCCGGTTATAAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAAT
63168630 CCGAACATTC
Statistics
Matches: 98, Mismatches: 13, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
79 58 0.59
80 40 0.41
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCACA
Found at i:63179699 original size:24 final size:24
Alignment explanation
Indices: 63179572--63179729 Score: 106
Period size: 24 Copynumber: 6.6 Consensus size: 24
63179562 ACCGATTTCA
* * *
63179572 CACACATAGTGCTAAAT-AAATTCG
1 CACACATAGTGC-CATTCAAATCCG
* *
63179596 CACACATAGTGCCATGCTACA-CCG
1 CACACATAGTGCCATTC-AAATCCG
* * *
63179620 CACACATAGTGCC-TTGAAGATTCA
1 CACACATAGTGCCATTCAA-ATCCG
* ** * * * *
63179644 CTCATGTATTGACATCCAAATCAG
1 CACACATAGTGCCATTCAAATCCG
*
63179668 CACACATAGTGCCATTCAATTCCG
1 CACACATAGTGCCATTCAAATCCG
63179692 CACACATAGTGCCATTCAAATCCG
1 CACACATAGTGCCATTCAAATCCG
* *
63179716 GACACTTAGTGCCA
1 CACACATAGTGCCA
63179730 ATGTTGACCC
Statistics
Matches: 98, Mismatches: 31, Indels: 10
0.71 0.22 0.07
Matches are distributed among these distances:
22 1 0.01
23 3 0.03
24 89 0.91
25 5 0.05
ACGTcount: A:0.33, C:0.29, G:0.15, T:0.23
Consensus pattern (24 bp):
CACACATAGTGCCATTCAAATCCG
Found at i:63193648 original size:47 final size:47
Alignment explanation
Indices: 63193594--63194049 Score: 723
Period size: 47 Copynumber: 9.6 Consensus size: 47
63193584 TATTTGAATA
* *
63193594 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63193641 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
63193690 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63193737 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
63193786 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63193833 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
63193882 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63193929 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
63193976 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
63194023 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
63194050 TCCCGAAGGG
Statistics
Matches: 381, Mismatches: 22, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
47 246 0.65
49 135 0.35
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:63193702 original size:96 final size:96
Alignment explanation
Indices: 63193594--63194049 Score: 812
Period size: 96 Copynumber: 4.8 Consensus size: 96
63193584 TATTTGAATA
63193594 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
63193659 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
63193690 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
63193755 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
63193786 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
63193851 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
63193882 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
63193945 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
63193976 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
63194040 -ATGTGATAAG
66 TATGTGATAAG
63194050 TCCCGAAGGG
Statistics
Matches: 347, Mismatches: 11, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
94 96 0.28
95 1 0.00
96 250 0.72
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:63193913 original size:143 final size:141
Alignment explanation
Indices: 63193594--63194049 Score: 741
Period size: 143 Copynumber: 3.2 Consensus size: 141
63193584 TATTTGAATA
* *
63193594 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
63193659 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
63193724 GGCCAATGTGATG
129 GGCCAATGTGATG
63193737 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
63193802 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGA
*
63193867 ATGGCCGATGTGATG
127 ATGGCCAATGTGATG
*
63193882 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
63193947 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
*
63194012 CCAACGTGATG
131 CCAATGTGATG
* *
63194023 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
63194050 TCCCGAAGGG
Statistics
Matches: 292, Mismatches: 17, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
141 54 0.18
143 148 0.51
145 90 0.31
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
CCAATGTGATG
Found at i:63196590 original size:38 final size:38
Alignment explanation
Indices: 63196478--63196590 Score: 174
Period size: 38 Copynumber: 3.0 Consensus size: 38
63196468 AATCCGAGTT
* * * *
63196478 TAAAGACCCGCTGACTATATGA-AGAGATTATGTCCGAG
1 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGGG
63196516 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGGG
1 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGGG
63196554 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGG
1 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGG
63196591 ATTAAAATTC
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
37 1 0.01
38 69 0.99
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGGG
Found at i:63196961 original size:40 final size:40
Alignment explanation
Indices: 63196644--63196951 Score: 474
Period size: 40 Copynumber: 7.7 Consensus size: 40
63196634 AGGTCTCGAC
*
63196644 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
63196683 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
63196723 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
63196763 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
63196803 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
63196843 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** * *
63196883 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
63196923 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
63196952 ATCATGCTGG
Statistics
Matches: 250, Mismatches: 18, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
39 4 0.02
40 246 0.98
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:63200479 original size:49 final size:47
Alignment explanation
Indices: 63200395--63200899 Score: 803
Period size: 47 Copynumber: 10.6 Consensus size: 47
63200385 TATTTGAATA
* *
63200395 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63200442 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
63200491 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63200538 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
63200587 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
63200636 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63200683 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
63200732 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63200779 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
63200826 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
63200873 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
63200900 TCCCGAAGGG
Statistics
Matches: 430, Mismatches: 22, Indels: 12
0.93 0.05 0.03
Matches are distributed among these distances:
47 246 0.57
49 184 0.43
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:63200503 original size:96 final size:94
Alignment explanation
Indices: 63200395--63200899 Score: 803
Period size: 96 Copynumber: 5.3 Consensus size: 94
63200385 TATTTGAATA
* *
63200395 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
63200460 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
63200491 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
63200556 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
63200587 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
63200652 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
63200683 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
63200748 TATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
63200779 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * *
63200844 TGTGACAGGGCCGAGTGGCCAACGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* *
63200873 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
63200900 TCCCGAAGGG
Statistics
Matches: 391, Mismatches: 16, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
94 100 0.26
96 246 0.63
98 45 0.12
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:63203439 original size:38 final size:38
Alignment explanation
Indices: 63203327--63203439 Score: 174
Period size: 38 Copynumber: 3.0 Consensus size: 38
63203317 AATCCGAGTT
* * * *
63203327 TAAAGACCCGCTGACTATATGA-AGAGATTATGTCCGAG
1 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGGG
63203365 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGGG
1 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGGG
63203403 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGG
1 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGG
63203440 ATTAAAATTC
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
37 1 0.01
38 69 0.99
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGGG
Found at i:63203809 original size:40 final size:40
Alignment explanation
Indices: 63203493--63203799 Score: 474
Period size: 40 Copynumber: 7.7 Consensus size: 40
63203483 AGGTCTCGAC
* *
63203493 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
63203532 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
63203572 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
63203612 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
*
63203652 GATGTATCCGGGCTAAG-TCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
63203691 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
* * *** * *
63203731 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGA
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
* * * *
63203771 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTTCCGAAGAGCA
63203800 ATCATGCTGG
Statistics
Matches: 250, Mismatches: 16, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 42 0.17
40 208 0.83
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
Found at i:63207285 original size:22 final size:22
Alignment explanation
Indices: 63207260--63207335 Score: 73
Period size: 22 Copynumber: 3.3 Consensus size: 22
63207250 AAGTGTATAT
63207260 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * * *
63207282 ATGTGATGAATG-TGAAAGTGCATA
1 ATGTGAT-AAGGCCGAATG-GC-CA
63207306 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
63207329 ATGTGAT
1 ATGTGAT
63207336 GAATGTGAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 18 0.44
23 6 0.15
24 6 0.15
25 11 0.27
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:63207374 original size:96 final size:94
Alignment explanation
Indices: 63207243--63207698 Score: 723
Period size: 96 Copynumber: 4.8 Consensus size: 94
63207233 TATTTGAATA
*
63207243 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
63207308 TGTGATAAGGCCGAATGGCCAATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* *
63207337 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TA
63207402 TATATGTGATAAGGCCTAATGGCCGATGTGATG
62 TATATGTGATAAGGCCTAATGGCCGATGTGATG
63207435 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
*
63207500 TATTTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
63207531 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
63207596 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
63207625 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
63207690 TGTGATAAG
66 TGTGATAAG
63207699 TCCCGAAGGG
Statistics
Matches: 337, Mismatches: 21, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
94 111 0.33
96 182 0.54
98 44 0.13
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:63207375 original size:49 final size:47
Alignment explanation
Indices: 63207243--63207698 Score: 705
Period size: 47 Copynumber: 9.6 Consensus size: 47
63207233 TATTTGAATA
* *
63207243 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
63207290 AATGTGAAAGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63207337 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
63207386 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
63207435 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
63207482 AATGTGAAAGTGTATATATATTTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
63207531 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
63207578 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
63207625 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
63207672 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
63207699 TCCCGAAGGG
Statistics
Matches: 383, Mismatches: 22, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 246 0.64
49 137 0.36
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:63214460 original size:32 final size:32
Alignment explanation
Indices: 63214424--63214522 Score: 144
Period size: 32 Copynumber: 3.1 Consensus size: 32
63214414 TACTCAATTG
*
63214424 AATTTTTGTACATACCTGTACCATATTGTACC
1 AATTTTCGTACATACCTGTACCATATTGTACC
63214456 AATTTTCGTACATACCTGTACCATATTGTACC
1 AATTTTCGTACATACCTGTACCATATTGTACC
* * * * *
63214488 AATTTCCGTAGATACCTGTATCATCTCGTACC
1 AATTTTCGTACATACCTGTACCATATTGTACC
63214520 AAT
1 AAT
63214523 CTCATACTCA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 61 1.00
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.37
Consensus pattern (32 bp):
AATTTTCGTACATACCTGTACCATATTGTACC
Found at i:63214631 original size:28 final size:28
Alignment explanation
Indices: 63214598--63214671 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 28
63214588 ACCCGATACC
* *
63214598 TTGCACACTAAGTGTCGTTCTGGATGT-
1 TTGCACACTAAGTGCCATTCTGGATGTA
63214625 TTCGCACACTAAGTGCCATTCTGGATGTA
1 TT-GCACACTAAGTGCCATTCTGGATGTA
63214654 TTGCACACTAAGTGCCAT
1 TTGCACACTAAGTGCCAT
63214672 CCCCGATACT
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 2 0.05
28 39 0.91
29 2 0.05
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (28 bp):
TTGCACACTAAGTGCCATTCTGGATGTA
Found at i:63214687 original size:28 final size:28
Alignment explanation
Indices: 63214570--63214698 Score: 86
Period size: 28 Copynumber: 4.6 Consensus size: 28
63214560 ATTCAATGTA
*
63214570 TCGCACACT-AGATGCCATACCCGATACCT
1 TCGCACACTAAG-TGCCATTCCCGATA-CT
* * ** **
63214599 T-GCACACTAAGTGTCGTTCTGGATGTT
1 TCGCACACTAAGTGCCATTCCCGATACT
**
63214626 TCGCACACTAAGTGCCATTCTGGATGTA-T
1 TCGCACACTAAGTGCCATTCCCGA--TACT
*
63214655 T-GCACACTAAGTGCCATCCCCGATACT
1 TCGCACACTAAGTGCCATTCCCGATACT
**
63214682 TCGCACGTTAAGTGCCA
1 TCGCACACTAAGTGCCA
63214699 CATATAATTA
Statistics
Matches: 79, Mismatches: 15, Indels: 13
0.74 0.14 0.12
Matches are distributed among these distances:
26 2 0.03
27 4 0.05
28 67 0.85
29 5 0.06
30 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (28 bp):
TCGCACACTAAGTGCCATTCCCGATACT
Found at i:63218551 original size:119 final size:120
Alignment explanation
Indices: 63218369--63218591 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
63218359 TCCTCGTTCA
*
63218369 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
63218434 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
63218489 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
63218551 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
63218592 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:63218591 original size:40 final size:40
Alignment explanation
Indices: 63218367--63218591 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
63218357 GCTCCTCGTT
* *
63218367 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
63218407 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
63218447 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
63218487 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
63218526 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
63218567 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63218592 CATCATTCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 119 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:63222786 original size:47 final size:47
Alignment explanation
Indices: 63222679--63223155 Score: 742
Period size: 47 Copynumber: 10.1 Consensus size: 47
63222669 GAAATGATAG
* *
63222679 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGA
* *
63222728 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
63222775 TACGGCCTAAT-GCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
63222821 T-AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
63222867 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* * *
63222914 TAGGGCCTAATAGCCGAGGTGATGAATGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* * *
63222961 TAAGGCCTAATAGCTGACGTGATGAATGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
63223008 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
**
63223055 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
63223102 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
63223149 CAAGGCC
1 TAAGGCC
63223156 GAGTGGCCAA
Statistics
Matches: 405, Mismatches: 21, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
45 8 0.02
46 70 0.17
47 292 0.72
49 35 0.09
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:63223374 original size:37 final size:37
Alignment explanation
Indices: 63223318--63223396 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
63223308 CCGAGCTCTA
* * *
63223318 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
63223355 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
63223392 AAGAC
1 AAGAC
63223397 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:63225350 original size:43 final size:43
Alignment explanation
Indices: 63225250--63225352 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
63225240 TTGGTTTTCA
* *
63225250 GCACTAAGTGTTCGAGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
63225293 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
63225336 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
63225353 TTAAAATGCA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.23, C:0.16, G:0.34, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:63225369 original size:29 final size:29
Alignment explanation
Indices: 63225334--63225407 Score: 112
Period size: 29 Copynumber: 2.6 Consensus size: 29
63225324 GTTGTGAGAT
* *
63225334 TGGCACTAAGTGTGCGGGCTTAAAATGCA
1 TGGCACTAAGTGTGCGAGCTTAAAATACA
* *
63225363 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTAAAATACA
63225392 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63225408 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTAAAATACA
Found at i:63225768 original size:40 final size:40
Alignment explanation
Indices: 63225720--63225915 Score: 248
Period size: 40 Copynumber: 4.9 Consensus size: 40
63225710 TTGAATGATG
*
63225720 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
63225760 TCCGGGCTAAGTCCCGAGGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
63225800 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * ** * * * *
63225840 TCTGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
63225880 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
63225916 CGTGTATTCG
Statistics
Matches: 135, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 135 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:63229821 original size:47 final size:47
Alignment explanation
Indices: 63229361--63229792 Score: 711
Period size: 47 Copynumber: 9.1 Consensus size: 47
63229351 GAAATGATAG
* *
63229361 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGA
* *
63229410 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
63229457 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
63229504 TAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
63229551 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
63229598 TAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
63229645 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
63229692 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
63229739 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
63229786 CAAGGCC
1 TAAGGCC
63229793 GAGTGGCCAA
Statistics
Matches: 364, Mismatches: 19, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
47 329 0.90
49 35 0.10
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:63229997 original size:37 final size:37
Alignment explanation
Indices: 63229955--63230033 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
63229945 CCGAGCTCTA
* * *
63229955 AAGACCCGATGACTACGTGTGGGGATTTTATCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATATCCGGGT
* *
63229992 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATATCCGGGT
63230029 AAGAC
1 AAGAC
63230034 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATATCCGGGT
Found at i:63235206 original size:28 final size:28
Alignment explanation
Indices: 63235140--63235346 Score: 301
Period size: 28 Copynumber: 7.4 Consensus size: 28
63235130 GAGATTGGCG
* * *
63235140 CTAAGTGTGCGGGTTTAAAT-TGTACGGCA
1 CTAAGTGTGCGAGTTTGATTATGTA--GCA
63235169 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
63235197 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
63235225 CTAAGTGTGCGAGTTTGATTACGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
63235253 CTAAGTGTGCGAGTTTGATTACGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
* *
63235281 CTAAGTGTACGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
63235309 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
63235336 CTGAGTGTGCG
1 CTAAGTGTGCG
63235347 GACTTAATAT
Statistics
Matches: 168, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.14
28 123 0.73
29 17 0.10
30 4 0.02
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:63243445 original size:28 final size:28
Alignment explanation
Indices: 63243379--63243613 Score: 348
Period size: 28 Copynumber: 8.4 Consensus size: 28
63243369 GAGATTGGCG
* * *
63243379 CTAAGTGTGCGGGTTTAAAT-TGTACGGCA
1 CTAAGTGTGCGAGTTTGATTATGTA--GCA
63243408 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
63243436 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
63243464 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
* *
63243492 CTAAGTGTGTGAGTTTGATTACGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
63243520 CTAAGTGTGCGAGTTTGATTACGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
* *
63243548 CTAGGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
63243576 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
63243603 CTGAGTGTGCG
1 CTAAGTGTGCG
63243614 GACTTAATAT
Statistics
Matches: 194, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.12
28 149 0.77
29 17 0.09
30 4 0.02
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:63248203 original size:56 final size:56
Alignment explanation
Indices: 63248117--63248229 Score: 208
Period size: 56 Copynumber: 2.0 Consensus size: 56
63248107 AAAAACAGGG
*
63248117 TTTGGGAATACTTACTATTGAGCTTGGAAAGCTTGAAACCCTAGCTATAGAAACCC
1 TTTGGGAATACTTACTATTGAGCTTGGAAAGCTTGAAACCCTAACTATAGAAACCC
*
63248173 TTTGGGAATACTTACTATTGAGTTTGGAAAGCTTGAAACCCTAACTATAGAAACCC
1 TTTGGGAATACTTACTATTGAGCTTGGAAAGCTTGAAACCCTAACTATAGAAACCC
63248229 T
1 T
63248230 AGAAATTTCG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (56 bp):
TTTGGGAATACTTACTATTGAGCTTGGAAAGCTTGAAACCCTAACTATAGAAACCC
Found at i:63257577 original size:40 final size:40
Alignment explanation
Indices: 63257479--63257781 Score: 387
Period size: 40 Copynumber: 7.6 Consensus size: 40
63257469 TCCTCGTTCA
* * * * *
63257479 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
63257518 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
63257558 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
63257598 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGTACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
63257638 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
63257678 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
63257718 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
63257758 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
63257782 CAGCATTCAA
Statistics
Matches: 238, Mismatches: 22, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 37 0.16
40 193 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:63273710 original size:28 final size:28
Alignment explanation
Indices: 63273653--63273805 Score: 229
Period size: 28 Copynumber: 5.5 Consensus size: 28
63273643 TAAATTGTGC
* *
63273653 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
63273680 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
63273708 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
63273736 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* * *
63273764 AGCACTAGGTGTGCGAG-CTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
63273791 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63273806 GACTTAATAT
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 37 0.32
28 79 0.68
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:63273794 original size:83 final size:83
Alignment explanation
Indices: 63273653--63273805 Score: 236
Period size: 83 Copynumber: 1.8 Consensus size: 83
63273643 TAAATTGTGC
* *
63273653 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTCTGATTATATAGCACTAAGT
63273718 GTGCGAGTTTGACTATGT
66 GTGCGAGTTTGACTATGT
* * * *
63273736 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAGGTGTGCGAG-CTGATTATATAGCACTGAG
1 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTCTGATTATATAGCACTAAG
63273800 TGTGCG
65 TGTGCG
63273806 GACTTAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
83 38 0.60
84 25 0.40
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (83 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTCTGATTATATAGCACTAAGT
GTGCGAGTTTGACTATGT
Found at i:63281845 original size:26 final size:27
Alignment explanation
Indices: 63281808--63281929 Score: 153
Period size: 26 Copynumber: 4.6 Consensus size: 27
63281798 TAAATTGTGC
*
63281808 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
63281835 -GCACTAAGTGTGCGGTTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
63281861 AGCACT-AGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
63281888 AGCA-TAAG-GTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
63281914 AGCACTAGGTGTGCGA
1 AGCACTAAGTGTGCGA
63281930 GCTGATATAT
Statistics
Matches: 83, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
26 53 0.64
27 24 0.29
28 6 0.07
ACGTcount: A:0.25, C:0.13, G:0.30, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63281882 original size:53 final size:52
Alignment explanation
Indices: 63281808--63281953 Score: 192
Period size: 53 Copynumber: 2.8 Consensus size: 52
63281798 TAAATTGTGC
*
63281808 AGCACTAAGTGTGCGAATTGACTATGTGCACTAAGTGTGCGGTTTGATTATGT
1 AGCACT-AGTGTGCGAGTTGACTATGTGCACTAAGTGTGCGGTTTGATTATGT
63281861 AGCACTAGTGTGCGAGTTTGACTATGTAGCA-TAAG-GTGCGAGTTTGATTATGT
1 AGCACTAGTGTGCGAG-TTGACTATGT-GCACTAAGTGTGCG-GTTTGATTATGT
* *
63281914 AGCACTAGGTGTGCGAGCTGA-TATATGCACT-AGTGTGCGG
1 AGCACTA-GTGTGCGAGTTGACTATGTGCACTAAGTGTGCGG
63281954 ATTAATATGT
Statistics
Matches: 84, Mismatches: 3, Indels: 14
0.83 0.03 0.14
Matches are distributed among these distances:
51 6 0.07
52 24 0.29
53 42 0.50
54 12 0.14
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.32
Consensus pattern (52 bp):
AGCACTAGTGTGCGAGTTGACTATGTGCACTAAGTGTGCGGTTTGATTATGT
Found at i:63285685 original size:15 final size:15
Alignment explanation
Indices: 63285654--63285719 Score: 60
Period size: 15 Copynumber: 4.4 Consensus size: 15
63285644 ATAAATTAAA
* *
63285654 TTCATTACTTAAATT
1 TTCAATACTTAATTT
63285669 TTCAATACTTAATTT
1 TTCAATACTTAATTT
* * *
63285684 TTGAACACTTATTTT
1 TTCAATACTTAATTT
* * *
63285699 TTCAACATTTAGTTT
1 TTCAATACTTAATTT
63285714 TTCAAT
1 TTCAAT
63285720 TTATCAAACA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 42 1.00
ACGTcount: A:0.30, C:0.14, G:0.03, T:0.53
Consensus pattern (15 bp):
TTCAATACTTAATTT
Found at i:63292257 original size:53 final size:53
Alignment explanation
Indices: 63292194--63292302 Score: 218
Period size: 53 Copynumber: 2.1 Consensus size: 53
63292184 TATCTGTAAA
63292194 AAGTTAGTTTTACTGTTAGCGGAAGGTTTTGTTTCCTAGGATGGGATGAAGGC
1 AAGTTAGTTTTACTGTTAGCGGAAGGTTTTGTTTCCTAGGATGGGATGAAGGC
63292247 AAGTTAGTTTTACTGTTAGCGGAAGGTTTTGTTTCCTAGGATGGGATGAAGGC
1 AAGTTAGTTTTACTGTTAGCGGAAGGTTTTGTTTCCTAGGATGGGATGAAGGC
63292300 AAG
1 AAG
63292303 ATTTTTTTTT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.24, C:0.09, G:0.32, T:0.35
Consensus pattern (53 bp):
AAGTTAGTTTTACTGTTAGCGGAAGGTTTTGTTTCCTAGGATGGGATGAAGGC
Found at i:63292867 original size:16 final size:17
Alignment explanation
Indices: 63292848--63292888 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
63292838 AACTAAACCT
* *
63292848 AAAAGAAAGTAAATGAA
1 AAAAAAAAGTAAAAGAA
*
63292865 AAAAAAAAGAAAAAGAA
1 AAAAAAAAGTAAAAGAA
63292882 AAAAAAA
1 AAAAAAA
63292889 GTGAGGAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.05
Consensus pattern (17 bp):
AAAAAAAAGTAAAAGAA
Found at i:63302292 original size:13 final size:14
Alignment explanation
Indices: 63302264--63302301 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
63302254 ACATATAAAC
*
63302264 ATAATGATATTTGAA
1 ATAAT-ATAATTGAA
63302279 ATAAT-TAATTGAA
1 ATAATATAATTGAA
63302292 ATAATATAAT
1 ATAATATAAT
63302302 ATATAAAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 12 0.57
14 4 0.19
15 5 0.24
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (14 bp):
ATAATATAATTGAA
Found at i:63322357 original size:19 final size:19
Alignment explanation
Indices: 63322330--63322369 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
63322320 ATTATGTTTA
63322330 ATATATGTTTTATTTATAT
1 ATATATGTTTTATTTATAT
* *
63322349 ATATTTGTTTTATTTTTAT
1 ATATATGTTTTATTTATAT
63322368 AT
1 AT
63322370 GAATAAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (19 bp):
ATATATGTTTTATTTATAT
Found at i:63326219 original size:93 final size:93
Alignment explanation
Indices: 63326060--63326230 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
63326050 CCCATAAGCG
* * *
63326060 AACTCGGACTCAACTCAACGAGCTCGGGCGTCCGCATCCATAAGTGAACTTGTACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTTGGACTCAACTCAAC
63326125 GAGTTCGGATGCCTAGTTACATCTCACA
66 GAGTTCGGATGCCTAGTTACATCTCACA
* * *
63326153 AACTCGGACTTAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTTGGACTCAACTCAAC
63326218 GAGTTCGGATGCC
66 GAGTTCGGATGCC
63326231 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTTGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACA
Found at i:63326221 original size:46 final size:46
Alignment explanation
Indices: 63326051--63326226 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
63326041 TGTAACCCGC
* * * * *
63326051 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTCCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
63326097 CCATAAGTGAACTTGTACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
63326147 CTCA-CA---AACTCGGACTTAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
63326190 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
63326227 TGCCCAAATA
Statistics
Matches: 103, Mismatches: 16, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
44 1 0.01
46 58 0.56
47 25 0.24
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:63327693 original size:17 final size:18
Alignment explanation
Indices: 63327665--63327702 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
63327655 CCATAGCCAA
*
63327665 ATATAGACAGAATATCAG
1 ATATAGACAGAATAACAG
63327683 ATATA-ACAGAATAACAG
1 ATATAGACAGAATAACAG
63327700 ATA
1 ATA
63327703 CCAGAACGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.55, C:0.11, G:0.13, T:0.21
Consensus pattern (18 bp):
ATATAGACAGAATAACAG
Found at i:63329367 original size:21 final size:21
Alignment explanation
Indices: 63329343--63329383 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
63329333 CGGGCATATG
63329343 CCCTAATCACAC-AGCCGTGTA
1 CCCTAATCACACTA-CCGTGTA
63329364 CCCTAATCACACTACCGTGT
1 CCCTAATCACACTACCGTGT
63329384 GCCTCTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.27, C:0.39, G:0.12, T:0.22
Consensus pattern (21 bp):
CCCTAATCACACTACCGTGTA
Done.