Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 189 of 344
Found at i:63330819 original size:500 final size:500
Alignment explanation
Indices: 63329878--63330877 Score: 1910
Period size: 500 Copynumber: 2.0 Consensus size: 500
63329868 GCATGTATGT
63329878 CAGCTTTGCTACGTAACTTTATCTGATCTAACAGTTTAACTGCAAAGTCACCGGTATAGTGGTTT
1 CAGCTTTGCTACGTAACTTTATCTGATCTAACAGTTTAACTGCAAAGTCACCGGTATAGTGGTTT
* *
63329943 ACCGCATTGCACTGTACTGCATGTATGTTAGCTATGCTATATATATATGATCTGGTAGTTTAAGC
66 ACCGCATTGCACTGTACTGCATGTACGTTAGCTATGCTATATATATATGATCTGGTAGTTCAAGC
* *
63330008 TGCAATTTATTTGTACTGCGGATTATCGCACTACACTGTATAGCACATTCGTCAGCTTTGTTGCG
131 TGCAATTTATTTGTACTACGGATTATCGCACTACACTGTATAGCACATTCGTCAGCTTTGCTGCG
* * *
63330073 TATATTTATTCTATCTGGCAATCTAACTGCAAATTACTGATATAGCAGACTATCGCATAGCACTA
196 GATATTTATTCTATCTGGCAATCTAACTGCAAATTACCGATATAGCAAACTATCGCATAGCACTA
63330138 TATCGCATGTATGATAGCTATCCTATGTATACATTATCTGATTTAGCAGTTCAACTGTATTTTGA
261 TATCGCATGTATGATAGCTATCCTATGTATACATTATCTGATTTAGCAGTTCAACTGTATTTTGA
63330203 TAAGACATCATTGTCGGGCGATCCGAGGTGGCGGGTCATTGTTGCCGGGCAACCCAGGATGACTT
326 TAAGACATCATTGTCGGGCGATCCGAGGTGGCGGGTCATTGTTGCCGGGCAACCCAGGATGACTT
63330268 TATATGGAGTGTAGGGTTGGATGGGCCTACTTGGTTCTATGTGGTGTGTGTGGTTGGATAAGCTA
391 TATATGGAGTGTAGGGTTGGATGGGCCTACTTGGTTCTATGTGGTGTGTGTGGTTGGATAAGCTA
*
63330333 AACAGCTCTTACGATGTGTGTTTGAGGAACGAAGATCTGTGTTTG
456 AACAGCTCTTACGATGTGTGCTTGAGGAACGAAGATCTGTGTTTG
63330378 CAGCTTTGCTACGTAACTTTATCTGATCTAACAGTTTAACTGCAAAGTCACCGGTATAGTGGTTT
1 CAGCTTTGCTACGTAACTTTATCTGATCTAACAGTTTAACTGCAAAGTCACCGGTATAGTGGTTT
63330443 ACCGCATTGCACTGTACTGCATGTACGTTAGCTATGCTATATATATATGATCTGGTAGTTCAAGC
66 ACCGCATTGCACTGTACTGCATGTACGTTAGCTATGCTATATATATATGATCTGGTAGTTCAAGC
63330508 TGCAATTTATTTGTACTACGGATTATCGCACTACACTGTATAGCACATTCGTCAGCTTTGCTGCG
131 TGCAATTTATTTGTACTACGGATTATCGCACTACACTGTATAGCACATTCGTCAGCTTTGCTGCG
63330573 GATATTTATTCTATCTGGCAATCTAACTGCAAATTACCGATATAGCAAACTATCGCATAGCACTA
196 GATATTTATTCTATCTGGCAATCTAACTGCAAATTACCGATATAGCAAACTATCGCATAGCACTA
63330638 TATCGCATGTATGATAGCTATCCTATGTATACATTATCTGATTTAGCAGTTCAACTGTATTTTGA
261 TATCGCATGTATGATAGCTATCCTATGTATACATTATCTGATTTAGCAGTTCAACTGTATTTTGA
63330703 TAAGACATCATTGTCGGGCGATCCGAGGTGGCGGGTCATTGTTGCCGGGCAACCCAGGATGACTT
326 TAAGACATCATTGTCGGGCGATCCGAGGTGGCGGGTCATTGTTGCCGGGCAACCCAGGATGACTT
*
63330768 TATATGGAGTGTAGGGTTGGATGGGCCTACTTGGTTCTATGTGGTGTGTGTGGTTGGATAATCTA
391 TATATGGAGTGTAGGGTTGGATGGGCCTACTTGGTTCTATGTGGTGTGTGTGGTTGGATAAGCTA
*
63330833 AATAGCTCTTACGATGTGTGCTTGAGGAACGAAGATCTGTGTTTG
456 AACAGCTCTTACGATGTGTGCTTGAGGAACGAAGATCTGTGTTTG
63330878 GCTAGACGAG
Statistics
Matches: 490, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
500 490 1.00
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (500 bp):
CAGCTTTGCTACGTAACTTTATCTGATCTAACAGTTTAACTGCAAAGTCACCGGTATAGTGGTTT
ACCGCATTGCACTGTACTGCATGTACGTTAGCTATGCTATATATATATGATCTGGTAGTTCAAGC
TGCAATTTATTTGTACTACGGATTATCGCACTACACTGTATAGCACATTCGTCAGCTTTGCTGCG
GATATTTATTCTATCTGGCAATCTAACTGCAAATTACCGATATAGCAAACTATCGCATAGCACTA
TATCGCATGTATGATAGCTATCCTATGTATACATTATCTGATTTAGCAGTTCAACTGTATTTTGA
TAAGACATCATTGTCGGGCGATCCGAGGTGGCGGGTCATTGTTGCCGGGCAACCCAGGATGACTT
TATATGGAGTGTAGGGTTGGATGGGCCTACTTGGTTCTATGTGGTGTGTGTGGTTGGATAAGCTA
AACAGCTCTTACGATGTGTGCTTGAGGAACGAAGATCTGTGTTTG
Found at i:63335406 original size:55 final size:53
Alignment explanation
Indices: 63335345--63335493 Score: 183
Period size: 55 Copynumber: 2.8 Consensus size: 53
63335335 ATGGCATTGG
* *
63335345 TAAGGCAAGGATCCCGTGTAAGACAATGTCAAGACATGGCATTGATGAGTGACTA
1 TAAGGCAAGGATCCCATGTAAGACCATGTCAAGACATGGCATTGATGAGT-AC-A
* * * *
63335400 TAAGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCA
1 TAAGGC-AAGGATCCCATGTAAGACCATGTCAAGACATGGCATTGATGAGTACA
* * *
63335453 TAAGGCAAAGATACCACGTAAGACCATGTCAAGACATGGCA
1 TAAGGCAAGGATCCCATGTAAGACCATGTCAAGACATGGCA
63335494 ATGGTAAGTT
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
52 3 0.04
53 33 0.41
54 1 0.01
55 40 0.49
56 4 0.05
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.19
Consensus pattern (53 bp):
TAAGGCAAGGATCCCATGTAAGACCATGTCAAGACATGGCATTGATGAGTACA
Found at i:63335478 original size:53 final size:53
Alignment explanation
Indices: 63335362--63335505 Score: 180
Period size: 53 Copynumber: 2.7 Consensus size: 53
63335352 AGGATCCCGT
* * * * * *
63335362 GTAAGACAATGTCAAGACATGGCATTGATGAGTGACTATAAGGCAAAGGTCCCAT
1 GTAAGACCATGTCAAGACATGGCATTGGTGAGT-TC-ATAAGGCAAAGATACCAC
* *
63335417 GTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAAGATACCAC
1 GTAAGACCATGTCAAGACATGGCATTGGTGAGTTCATAAGGCAAAGATACCAC
* *
63335470 GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCA
1 GTAAGACCATGTCAAGACATGGCATTGGTGAGTTCA
63335506 AAAAGAAAAA
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 47 0.61
54 1 0.01
55 29 0.38
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (53 bp):
GTAAGACCATGTCAAGACATGGCATTGGTGAGTTCATAAGGCAAAGATACCAC
Found at i:63336470 original size:13 final size:13
Alignment explanation
Indices: 63336452--63336477 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63336442 CCCTGTTCTG
63336452 GATTTATAAACTC
1 GATTTATAAACTC
63336465 GATTTATAAACTC
1 GATTTATAAACTC
63336478 ACTAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
GATTTATAAACTC
Found at i:63338691 original size:24 final size:22
Alignment explanation
Indices: 63338670--63338713 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
63338660 TTCAATTTAT
63338670 TTTATTATATATATAAATATTTG
1 TTTATT-TATATATAAATATTTG
* *
63338693 TTTATTTATATTTATATATTT
1 TTTATTTATATATAAATATTT
63338714 TTGTTTGCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (22 bp):
TTTATTTATATATAAATATTTG
Found at i:63338716 original size:24 final size:23
Alignment explanation
Indices: 63338670--63338719 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
63338660 TTCAATTTAT
63338670 TTTATTATATATATAAATATTTG
1 TTTATTATATATATAAATATTTG
* * *
63338693 TTTATTTATATTTATATATTTTTG
1 TTTA-TTATATATATAAATATTTG
63338717 TTT
1 TTT
63338720 GCTAACGTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (23 bp):
TTTATTATATATATAAATATTTG
Found at i:63342315 original size:40 final size:36
Alignment explanation
Indices: 63342271--63342355 Score: 100
Period size: 37 Copynumber: 2.2 Consensus size: 36
63342261 ATTAAATCAG
*
63342271 TTATTTTTATTTTCTTTGCTATTATTTTTA-TAATCATTAA
1 TTATTTTTA-TTTCTTT--TATTATTATTACT-ATCATT-A
*
63342311 TTATTATTATTTCTTTTATTATTATTACTATCATTA
1 TTATTTTTATTTCTTTTATTATTATTACTATCATTA
63342347 TTATTTTTA
1 TTATTTTTA
63342356 GTAGTAGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
36 9 0.22
37 16 0.39
38 1 0.02
39 7 0.17
40 8 0.20
ACGTcount: A:0.26, C:0.07, G:0.01, T:0.66
Consensus pattern (36 bp):
TTATTTTTATTTCTTTTATTATTATTACTATCATTA
Found at i:63342318 original size:3 final size:3
Alignment explanation
Indices: 63342290--63342665 Score: 144
Period size: 3 Copynumber: 123.3 Consensus size: 3
63342280 TTTTCTTTGC
* * * *
63342290 TAT TAT TTT TAT AAT CAT TAAT TAT TAT TAT T-T CTTT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT -TAT TAT TAT TAT
* * * * * * * *
63342336 TAC TAT CAT TAT TAT TTT TAG TAG TAG TAT TAT TAT CAT TACT TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
* ** * * *
63342382 TAT TAT TGT CCT TAC TAT TGT TAT TCTT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * ** *
63342428 TAT TAT TATT TAT TAC TAT TAT TGT TAGT T-T TAT TAT TAC TGC CAT
1 TAT TAT TA-T TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
* * * * *
63342474 TAT TTT TAT TAT TAC TGT TAT AAT TAT TA- TAT T-T CTCT T-T TGA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT T-AT
* * *
63342517 AATT TATT TACT TAT TAT TAT TAT TAT TAT TAC TAT TAT TGT TAGT T-T
1 TA-T TA-T TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
* ** * * * * *
63342565 TAT TAT TAC TGC CAT TAT TTT TAT TAT TAC TGT TAT AAT TAT TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
63342612 T-T CTCT T-T TGA- AATT TATT TACT TAT TAT TAT TAT TAT TAT TAT
1 TAT -TAT TAT T-AT TA-T TA-T TA-T TAT TAT TAT TAT TAT TAT TAT
63342656 TAT TAT TAT T
1 TAT TAT TAT T
63342666 TTTAAAATAC
Statistics
Matches: 278, Mismatches: 71, Indels: 48
0.70 0.18 0.12
Matches are distributed among these distances:
2 17 0.06
3 228 0.82
4 33 0.12
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:63342347 original size:18 final size:17
Alignment explanation
Indices: 63342290--63342450 Score: 79
Period size: 16 Copynumber: 9.6 Consensus size: 17
63342280 TTTTCTTTGC
*
63342290 TATTATTTTTATAATCAT
1 TATTATTATTAT-ATCAT
* *
63342308 TAATTATTATTATTTCTTT
1 T-ATTATTATTATATC-AT
63342327 TATTATTATTACTATCAT
1 TATTATTATTA-TATCAT
*
63342345 TATTATT-TT-TAGT-AG
1 TATTATTATTATA-TCAT
*
63342360 TAGTATTA-T-TATCAT
1 TATTATTATTATATCAT
* * *
63342375 TACTTTTTATTATTGTCCT
1 TA-TTATTATTA-TATCAT
* * *
63342394 TACTATTGTTAT-TCTT
1 TATTATTATTATATCAT
63342410 TATTATTATTAT-T-AT
1 TATTATTATTATATCAT
*
63342425 TATTATTATTAT-TTAT
1 TATTATTATTATATCAT
*
63342441 TACTATTATT
1 TATTATTATT
63342451 GTTAGTTTTA
Statistics
Matches: 112, Mismatches: 20, Indels: 24
0.72 0.13 0.15
Matches are distributed among these distances:
14 1 0.01
15 29 0.26
16 30 0.27
17 4 0.04
18 27 0.24
19 21 0.19
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (17 bp):
TATTATTATTATATCAT
Found at i:63342461 original size:28 final size:28
Alignment explanation
Indices: 63342310--63342487 Score: 107
Period size: 28 Copynumber: 6.5 Consensus size: 28
63342300 ATAATCATTA
*
63342310 ATTATTATTATT-TCT-TTTATTATTATT
1 ATTATTATTATTAT-TATTTATTACTATT
* * * * *
63342337 ACTATCATTATTATT-TTTAGTAGTAGT
1 ATTATTATTATTATTATTTATTACTATT
* * * *
63342364 ATTATTATCATTACTT-TTTATTATTGTC
1 ATTATTATTATTA-TTATTTATTACTATT
* * * * *
63342392 CTTACTATTGTTATTCTTTATTATTATT
1 ATTATTATTATTATTATTTATTACTATT
63342420 ATTATTATTATTATTATTTATTACTATT
1 ATTATTATTATTATTATTTATTACTATT
* * * *
63342448 ATTGTTAGTT-TTATTA-TTACTGCCATT
1 ATTATTA-TTATTATTATTTATTACTATT
*
63342475 ATTTTTATTATTA
1 ATTATTATTATTA
63342488 CTGTTATAAT
Statistics
Matches: 117, Mismatches: 29, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
26 2 0.02
27 49 0.42
28 64 0.55
29 2 0.02
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.62
Consensus pattern (28 bp):
ATTATTATTATTATTATTTATTACTATT
Found at i:63342569 original size:106 final size:106
Alignment explanation
Indices: 63342421--63342662 Score: 466
Period size: 106 Copynumber: 2.3 Consensus size: 106
63342411 ATTATTATTA
63342421 TTATTATTATTATTATTTATTACTATTATTGTTAGTTTTATTATTACTGCCATTATTTTTATTAT
1 TTATTATTATTATTA-TTATTACTATTATTGTTAGTTTTATTATTACTGCCATTATTTTTATTAT
63342486 TACTGTTATAATTATTATATTTCTCTTTTGAAATTTATTTAC
65 TACTGTTATAATTATTATATTTCTCTTTTGAAATTTATTTAC
63342528 TTATTATTATTATTATTATTACTATTATTGTTAGTTTTATTATTACTGCCATTATTTTTATTATT
1 TTATTATTATTATTATTATTACTATTATTGTTAGTTTTATTATTACTGCCATTATTTTTATTATT
63342593 ACTGTTATAATTATTATATTTCTCTTTTGAAATTTATTTAC
66 ACTGTTATAATTATTATATTTCTCTTTTGAAATTTATTTAC
*
63342634 TTATTATTATTATTATTATTATTATTATT
1 TTATTATTATTATTATTATTACTATTATT
63342663 ATTTTTAAAA
Statistics
Matches: 134, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
106 119 0.89
107 15 0.11
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.62
Consensus pattern (106 bp):
TTATTATTATTATTATTATTACTATTATTGTTAGTTTTATTATTACTGCCATTATTTTTATTATT
ACTGTTATAATTATTATATTTCTCTTTTGAAATTTATTTAC
Found at i:63344883 original size:23 final size:23
Alignment explanation
Indices: 63344840--63344883 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
63344830 TTGATAGAGT
*
63344840 AAAAAATATTTGAGATAATTAAA
1 AAAAAATATTTGAAATAATTAAA
*
63344863 AAAATAATATTT-AAATTATTA
1 AAAA-AATATTTGAAATAATTA
63344884 TTTGAATTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (23 bp):
AAAAAATATTTGAAATAATTAAA
Found at i:63351055 original size:40 final size:40
Alignment explanation
Indices: 63350994--63351069 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
63350984 CGGTACTCTA
* **
63350994 TGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCCATATT
1 TGGTGTGTAGGGATGGATGGGTCAATTTTATCCCCATATT
*
63351034 TGGTGTGTAGGGATGGGTGGGTCAATTTTATCCCCA
1 TGGTGTGTAGGGATGGATGGGTCAATTTTATCCCCA
63351070 CATGGTGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.16, C:0.12, G:0.34, T:0.38
Consensus pattern (40 bp):
TGGTGTGTAGGGATGGATGGGTCAATTTTATCCCCATATT
Found at i:63368641 original size:44 final size:44
Alignment explanation
Indices: 63368592--63368783 Score: 242
Period size: 44 Copynumber: 4.4 Consensus size: 44
63368582 GAGTGAGATG
* * * *
63368592 AAGCTACAAATCCCATATCTC-AGAAGTTACAGTAGATCAGATTA
1 AAGCTACAAATCCTATCTCCCTA-AAGTTACAGTAGAGCAGATTA
* * * *
63368636 AAGCTACAAATCTTATCTCCCTAAAGTTACAATTGAGCATATTA
1 AAGCTACAAATCCTATCTCCCTAAAGTTACAGTAGAGCAGATTA
* * * * *
63368680 AAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTA
1 AAGCTACAAATCCTATCTCCCTAAAGTTACAGTAGAGCAGATTA
63368724 AAGCTACAAATCCTATCTCCCTAAAGTTACAGTAGAGCAGATTA
1 AAGCTACAAATCCTATCTCCCTAAAGTTACAGTAGAGCAGATTA
*
63368768 AAGCGACAAATCCTAT
1 AAGCTACAAATCCTAT
63368784 ACCTCTGAAA
Statistics
Matches: 128, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
44 127 0.99
45 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.27
Consensus pattern (44 bp):
AAGCTACAAATCCTATCTCCCTAAAGTTACAGTAGAGCAGATTA
Found at i:63368792 original size:88 final size:88
Alignment explanation
Indices: 63368592--63368992 Score: 297
Period size: 88 Copynumber: 4.4 Consensus size: 88
63368582 GAGTGAGATG
* * * * * * *
63368592 AAGCTACAAATCCCATATCTCAGAAGTTACAGTAGATCAGATTAAAGCTACAAATCTTATCTCCC
1 AAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGAGCAAATTAAAGCTACAAATCTTATCTCCC
* * *
63368657 TAAAGTTACAATTGAGCATATTA
66 TAAAGTTACAGTGGAGCAGATTA
* * *
63368680 AAGCTACAAATCTTAT-CTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCTACAAATCCTATCTCC
1 AAGCTACAAATCCTATAC-CTCTGAAGTTGCAGTGGAGCAAATTAAAGCTACAAATCTTATCTCC
*
63368744 CTAAAGTTACAGTAGAGCAGATTA
65 CTAAAGTTACAGTGGAGCAGATTA
* * ** * * *
63368768 AAGCGACAAATCCTATACCTCTGAAATTTTATTGG-GTCAAATCAAATCTACCATAACAAGTCTT
1 AAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGAG-CAAATTAAAGCTA-C---A-AA-TCTT
* * * *
63368832 ATTTCCCTGAAGTTGCAGTGGAACAGATTA
59 ATCTCCCTAAAGTTACAGTGGAGCAGATTA
* * * *
63368862 AAGCTACAAGTTACAAATCT-TATCTCTCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAATCT
1 AAGCTACAA-AT-C----CTATA-C-CTCTGAAGTTGCAGTGGAGCAAATTAAAGCTACAAATCT
* * *
63368926 TATCTCCCTGAAGTTGCAGTGGAGTAGATTGA
58 TATCTCCCTAAAGTTACAGTGGAGCAGATT-A
* * * *
63368958 AA-CTATAATTCCTATACCCCTAAAGTTGCAGTGGA
1 AAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGA
63368993 TTAGAATAGG
Statistics
Matches: 249, Mismatches: 44, Indels: 40
0.75 0.13 0.12
Matches are distributed among these distances:
87 1 0.00
88 126 0.51
89 5 0.02
90 2 0.01
92 1 0.00
93 3 0.01
94 38 0.15
95 36 0.14
96 6 0.02
97 1 0.00
99 2 0.01
100 4 0.02
101 24 0.10
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (88 bp):
AAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGAGCAAATTAAAGCTACAAATCTTATCTCCC
TAAAGTTACAGTGGAGCAGATTA
Found at i:63368904 original size:51 final size:51
Alignment explanation
Indices: 63368823--63368948 Score: 167
Period size: 51 Copynumber: 2.6 Consensus size: 51
63368813 ATCTACCATA
* *
63368823 ACAAGTCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTT
* *
63368874 ACAAATCTTATCTCTCTGAAGTTGTAGTGGAACAGATTAAAG---C----T
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTT
63368918 ACAAATCTTATCTCCCTGAAGTTGCAGTGGA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGA
63368949 GTAGATTGAA
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
44 30 0.43
48 1 0.01
51 38 0.55
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (51 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTT
Found at i:63368955 original size:44 final size:44
Alignment explanation
Indices: 63368873--63368997 Score: 137
Period size: 44 Copynumber: 2.8 Consensus size: 44
63368863 AGCTACAAGT
* * *
63368873 TACAAATCTTATCTCTCTGAAGTTGTAGTGGAACAGATT-AAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAA-C
*
63368917 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAAC
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAAC
* * * * *
63368961 TATAATTCCTATAC-CCCTAAAGTTGCAGTGGATTAGA
1 TACAAATCTTAT-CTCCCTGAAGTTGCAGTGGAATAGA
63368998 ATAGGCTACT
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
44 66 0.94
45 4 0.06
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (44 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAAC
Found at i:63372353 original size:30 final size:31
Alignment explanation
Indices: 63372317--63372387 Score: 117
Period size: 30 Copynumber: 2.3 Consensus size: 31
63372307 TTAGATTCAG
63372317 TGCTAATCTTCTATTCAAATTAATGGA-TTT
1 TGCTAATCTTCTATTCAAATTAATGGACTTT
63372347 TGCTAATCTTCTATTCAAATTAATGGACTTT
1 TGCTAATCTTCTATTCAAATTAATGGACTTT
* *
63372378 TACGAATCTT
1 TGCTAATCTT
63372388 GCCAAAATTC
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
30 27 0.71
31 11 0.29
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45
Consensus pattern (31 bp):
TGCTAATCTTCTATTCAAATTAATGGACTTT
Found at i:63374448 original size:921 final size:928
Alignment explanation
Indices: 63372759--63374502 Score: 2587
Period size: 921 Copynumber: 1.9 Consensus size: 928
63372749 GTTCCACAAA
* **
63372759 CTAGCCACACGACCGTGCAACCCATCTACATGGCTTAAAGTATCACATCCCAAAAATTAGGTTAG
1 CTAGCCACACGACCGTGCAACCCATCCACATGGCTTAAAGTATCACATCCCAAAAAACAGGTTAG
* *
63372824 AAAAAATTGGATTAGTGAAACCAAGAGTGGTCACGTCCTAATTTTAAGTTATGATTGTGAAAATG
66 AAAAAATTGGACTAGTGAAACCAAGAGTGGTCACGTCATAATTTTAAGTTATGATTGTGAAAATG
* * * ** *
63372889 TTATCAAGTGAATTGATCTACTTCGGTTGTTAAAAGTTCTTTATGTGTGTTTGAGGTCCTATGTT
131 TTATCAAGTGAATTGATCTACTTCAGTGGTTAAAAGCTCTGGATGTGTGGTTGAGGTCCTATGTT
* *
63372954 CAAACCACCGTGTGTGCATAATGGAATTATTTTTCGTTTTGAGCTCTGGAAAAAATCTAATTGGA
196 CAAACCACCGTGTGTGCATAATGGAATTATTTTTCATTTTGAGCTCTGGAAAAAATCTAATAGGA
* *
63373019 TAACTAATCAGATTTAGTAGAGGTAATGGGTAGTTTTTTTTAAAAGTTTTAATTTATTAAAAGAT
261 TAACTAATCAGATTTAGTAGAGGTAATGGGCAG-TTTTTTTAAAAGTTTTAATTAATTAAAAGAT
63373084 TTACTTCCCAAAATTTTCCCCACTCTCCATACCACGTCCAACTTCCCACTTCCCCATCTTTCCTA
325 TTACTTCCCAAAATTTTCCCCACTCTCCATACCACGTCCAACTTCCCACTTCCCCATCTTTCCTA
* **
63373149 TTATTCTGTTTTTTTCTTTTTTTCTCTTTGTTTTTCTTTTTGTTGATTATTCTATTCCAAATTTT
390 TTATTCTGTTTTTTTCTTTCTTTCTCTTTCCTTTTC-TTTTGTTG---ATTCTATTCCAAATTTT
* *
63373214 CTCCCATAATTTCTGGAATTAATTTTGCCATTGTGGTGTTCCGTTTTTAGGTGTTTTCCATTGTC
451 CTCCCACAATTTCTGGAATTAATTTTGCCATTGTAGTGTTCCGTTTTTAGGTGTTTTCCATTGTC
* *
63373279 ATTTGTTCATCTTCTGGTAAGTGTTTCATTACTTGTTATGGGAGCAATTTTTATCATTCTTAGTC
516 ATGTGTTCATCTTCTGGTAAGTGTATCATTACTTGTTATGGGAGCAATTTTTATCATTCTTAGTC
*
63373344 TGTTTCAAAGGATGAAGGGTGAATGTGTGGGTTGTTATTTGTTTATGTATTAATGGTGTTATGTT
581 TGTTTCAAAGGACGAAGGGTGAATGTGTGGGTTGTTATTTGTTTATGTATTAATGGTGTTATGTT
* * * * *
63373409 GTTCTGTAAGAAGAAATTTGAAAGTCTTACGATGTTTTTCCAATAGAATAGGTGCTTTGGGGTTG
646 GTTCTGTAAGAACAAATTTG-AAGTCTTACAACGTTTTTCCAACAGAATAGGTGCTTTGGGGTGG
*
63373474 TTGTTTCTATCAAGAGTAAGTGCTCATATATTGATTTTAGGGATTACTTTTTTTTAAGAAATGAA
710 TTGTTTCTATCAAGAGTAAGTGCTCATATATTAATTTTAGGGATTACTTTTTTTTAAGAAATGAA
*
63373539 T-G-AATAATTGGGTTAACTTGTGTTAGTTAATCGATTCAATTTTGGGTTTGATTCTGACATGGC
775 TGGTAA-AATTGGGTTAACTTGTATTAGTTAATCGATTCAATTTTGGGTTTGATTCTGACATGGC
63373602 CTAAGACCCTCCACATGGCCTCCCATACAGTTGTGCCTATCGTGAAGCCTAATTTTGTGTGTCCC
839 CTAAGACCCTCCACATGGCCTCCCATACAGTTGTGCCTATCGTGAAGCCTAATTTTGTGTGTCCC
63373667 ACACAGCCACAGTCTGTTCTATGGC
904 ACACAGCCACAGTCTGTTCTATGGC
* * * * *
63373692 CTAGCCATACGGCCGTGTAACCCCTCCACATGGCTTAAGGTATCACATCCCAAAAAACAGGTTAG
1 CTAGCCACACGACCGTGCAACCCATCCACATGGCTTAAAGTATCACATCCCAAAAAACAGGTTAG
* * * * *
63373757 AACAATTTGGGCTAGTGAAACCAAGAGTGGTCACG-CATGATTTTGAGTTATGATTGTGAAAATG
66 AAAAAATTGGACTAGTGAAACCAAGAGTGGTCACGTCATAATTTTAAGTTATGATTGTGAAAATG
* * * *
63373821 TTATCAAGTGGATTGATCTGCTTCAGTGGTTAAAAGCTCTGGATGTGTGGTTGAGGTCTTGTGTT
131 TTATCAAGTGAATTGATCTACTTCAGTGGTTAAAAGCTCTGGATGTGTGGTTGAGGTCCTATGTT
* *
63373886 CAAACTATCGTGTGTGCATAATGGAATTATTTTTCATTTTGAGCTCTGGAAAAAATCTAATAGGA
196 CAAACCACCGTGTGTGCATAATGGAATTATTTTTCATTTTGAGCTCTGGAAAAAATCTAATAGGA
* * * *
63373951 TAACTAATTAGATTTAGTGGGGGTAATGGGCA-TTTTTTT-AAA-TTTTAATTAATTAAAATATT
261 TAACTAATCAGATTTAGTAGAGGTAATGGGCAGTTTTTTTAAAAGTTTTAATTAATTAAAAGATT
* * * * * *
63374013 TATTTCCCAAAA-TTTCCCTACTCTCCATATCACGTCCAATTTCCCACTTCCTCATCTTTTCTAT
326 TACTTCCCAAAATTTTCCCCACTCTCCATACCACGTCCAACTTCCCACTTCCCCATCTTTCCTAT
63374077 T-TTCCTGTTTTCTTTCTTTCTTTCTCTTTCCTTTTC-TTT-TTG-TTCTATTCCAAATTTTCTC
391 TATT-CTGTTTT-TTTCTTTCTTTCTCTTTCCTTTTCTTTTGTTGATTCTATTCCAAATTTTCTC
* * * * *
63374138 CTACAATTTTTGGAATTAATTTTGCCATTGTAGTGTTCTGTTTTTGGGTGTTTTCCATTGTTATG
454 CCACAATTTCTGGAATTAATTTTGCCATTGTAGTGTTCCGTTTTTAGGTGTTTTCCATTGTCATG
**
63374203 TGTTTGTCTTCTGGTAAGTGTATCATTACTTGTTATGGGAGCAATTTTTATCATTCTTAGTCTGT
519 TGTTCATCTTCTGGTAAGTGTATCATTACTTGTTATGGGAGCAATTTTTATCATTCTTAGTCTGT
* ** *
63374268 TTCAAAGGACGAAGGGTGAATTTGTGGGTTGATTATTTGTTTATGTATTGGTTGTGTT-TCGTTG
584 TTCAAAGGACGAAGGGTGAATGTGTGGGTTG-TTATTTGTTTATGTATTAATGGTGTTAT-GTTG
* * *
63374332 TTCTGTGAGAACAATTCTTG-AGTCTTATAACGTTTTTCCAACAGAATAGGTGCTTTGGGGTGGT
647 TTCTGTAAGAACAAAT-TTGAAGTCTTACAACGTTTTTCCAACAGAATAGGTGCTTTGGGGTGGT
* ** * ** * *
63374396 TGTTTCTGTCAAGAGTAAGTGCTTGTATATTAATTTTATGGATTGTTTTTTTTTATGAAATGGAT
711 TGTTTCTATCAAGAGTAAGTGCTCATATATTAATTTTAGGGATTACTTTTTTTTAAGAAATGAAT
63374461 GGTAAAATTGGGTTAACTTGTATTAGTTAATCGATTCAATTT
776 GGTAAAATTGGGTTAACTTGTATTAGTTAATCGATTCAATTT
63374503 GGTGTCATAT
Statistics
Matches: 726, Mismatches: 78, Indels: 25
0.88 0.09 0.03
Matches are distributed among these distances:
921 263 0.36
922 77 0.11
923 5 0.01
925 3 0.00
926 5 0.01
927 55 0.08
928 50 0.07
929 3 0.00
930 7 0.01
932 170 0.23
933 88 0.12
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.42
Consensus pattern (928 bp):
CTAGCCACACGACCGTGCAACCCATCCACATGGCTTAAAGTATCACATCCCAAAAAACAGGTTAG
AAAAAATTGGACTAGTGAAACCAAGAGTGGTCACGTCATAATTTTAAGTTATGATTGTGAAAATG
TTATCAAGTGAATTGATCTACTTCAGTGGTTAAAAGCTCTGGATGTGTGGTTGAGGTCCTATGTT
CAAACCACCGTGTGTGCATAATGGAATTATTTTTCATTTTGAGCTCTGGAAAAAATCTAATAGGA
TAACTAATCAGATTTAGTAGAGGTAATGGGCAGTTTTTTTAAAAGTTTTAATTAATTAAAAGATT
TACTTCCCAAAATTTTCCCCACTCTCCATACCACGTCCAACTTCCCACTTCCCCATCTTTCCTAT
TATTCTGTTTTTTTCTTTCTTTCTCTTTCCTTTTCTTTTGTTGATTCTATTCCAAATTTTCTCCC
ACAATTTCTGGAATTAATTTTGCCATTGTAGTGTTCCGTTTTTAGGTGTTTTCCATTGTCATGTG
TTCATCTTCTGGTAAGTGTATCATTACTTGTTATGGGAGCAATTTTTATCATTCTTAGTCTGTTT
CAAAGGACGAAGGGTGAATGTGTGGGTTGTTATTTGTTTATGTATTAATGGTGTTATGTTGTTCT
GTAAGAACAAATTTGAAGTCTTACAACGTTTTTCCAACAGAATAGGTGCTTTGGGGTGGTTGTTT
CTATCAAGAGTAAGTGCTCATATATTAATTTTAGGGATTACTTTTTTTTAAGAAATGAATGGTAA
AATTGGGTTAACTTGTATTAGTTAATCGATTCAATTTTGGGTTTGATTCTGACATGGCCTAAGAC
CCTCCACATGGCCTCCCATACAGTTGTGCCTATCGTGAAGCCTAATTTTGTGTGTCCCACACAGC
CACAGTCTGTTCTATGGC
Found at i:63375064 original size:37 final size:37
Alignment explanation
Indices: 63375023--63375093 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
63375013 GATTTGCTAA
63375023 ACCATATGTGTTACACGTAATCTGTTATCTGTTCATT
1 ACCATATGTGTTACACGTAATCTGTTATCTGTTCATT
*
63375060 ACCATATGTGTTATACGTAATCTGTTATCTGTTC
1 ACCATATGTGTTACACGTAATCTGTTATCTGTTC
63375094 TTATAAGCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.24, C:0.18, G:0.14, T:0.44
Consensus pattern (37 bp):
ACCATATGTGTTACACGTAATCTGTTATCTGTTCATT
Found at i:63382242 original size:24 final size:24
Alignment explanation
Indices: 63382194--63382247 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
63382184 TTTTAAAAAT
*
63382194 ATAATAATAAATTTAAATTGTATA
1 ATAATAATAAATTTAAATTGAATA
63382218 ATAATAAT-AATATTAATATT-AATA
1 ATAATAATAAAT-TTAA-ATTGAATA
63382242 A-AATAA
1 ATAATAA
63382248 AAGAAATCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 8 0.30
24 16 0.59
25 3 0.11
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (24 bp):
ATAATAATAAATTTAAATTGAATA
Found at i:63383510 original size:24 final size:26
Alignment explanation
Indices: 63383473--63383530 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 26
63383463 CCAGCTTGTC
* * * *
63383473 TATATTAAATTTTTTATAT-TATTTT
1 TATATAAAATTTTTAATATATATATA
63383498 TATATAAAATTTTTAATATATATATA
1 TATATAAAATTTTTAATATATATATA
63383524 TATATAA
1 TATATAA
63383531 TACATCAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 17 0.61
26 11 0.39
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (26 bp):
TATATAAAATTTTTAATATATATATA
Found at i:63388206 original size:26 final size:26
Alignment explanation
Indices: 63388177--63388229 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
63388167 TCAAACATGC
63388177 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
63388203 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
63388229 A
1 A
63388230 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:63389752 original size:26 final size:26
Alignment explanation
Indices: 63389714--63389771 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
63389704 CATGAAATTC
63389714 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
63389740 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
63389766 TTATCA
1 TTATCA
63389772 ATTTGTATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:63394185 original size:41 final size:41
Alignment explanation
Indices: 63394129--63394373 Score: 340
Period size: 41 Copynumber: 6.0 Consensus size: 41
63394119 AAAATCGAAT
*
63394129 AGATC-GAGCATTAGCGGCGTTTTTAACAAAGCGCCGCTAA
1 AGATCTGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
*
63394169 AGATCTGAGCATTAGCGGCGTTTTTAGGAAAGCGCCGCTAA
1 AGATCTGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
* *
63394210 AGATCTG-GACATTAGCGACGTTTTTAGGAAAGCGCCGCTAA
1 AGATCTGAG-CATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
* *
63394251 AGATCTG-GACATTAGCGGCGTTTTTAGGAAAGCGCCACTAA
1 AGATCTGAG-CATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
* *
63394292 AGATCTGGGCATTAGCGGCGTTTTTAAAAAAGCGCCGCTAA
1 AGATCTGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
63394333 AGATC-GAGCATTAGCGGCGCTTTTTTAA-AAA-CGCCGCTAA
1 AGATCTGAGCATTAGCGGCG--TTTTTAAGAAAGCGCCGCTAA
63394373 A
1 A
63394374 AGATTAAGCA
Statistics
Matches: 191, Mismatches: 9, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
40 29 0.15
41 154 0.81
42 8 0.04
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.24
Consensus pattern (41 bp):
AGATCTGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
Found at i:63394937 original size:7 final size:7
Alignment explanation
Indices: 63394927--63395053 Score: 57
Period size: 7 Copynumber: 17.9 Consensus size: 7
63394917 ACTATTTAAA
63394927 GGTTTAG
1 GGTTTAG
63394934 GGTTTATG
1 GGTTTA-G
63394942 GGTTTAG
1 GGTTTAG
*
63394949 GGATTA-
1 GGTTTAG
* *
63394955 TGTTTAC
1 GGTTTAG
* *
63394962 GGCTTAT
1 GGTTTAG
63394969 GGTTTAAG
1 GGTTT-AG
*
63394977 GG-TTGG
1 GGTTTAG
63394983 GGTTTAAG
1 GGTTT-AG
63394991 GG-TTATG
1 GGTTTA-G
*
63394998 GG-CTAG
1 GGTTTAG
*
63395004 TGGTTAAG
1 -GGTTTAG
63395012 GGTTTATG
1 GGTTTA-G
63395020 GG-TTATG
1 GGTTTA-G
* *
63395027 GGTTAAT
1 GGTTTAG
63395034 GGTTTAG
1 GGTTTAG
*
63395041 GGTTTAA
1 GGTTTAG
63395048 GGTTTA
1 GGTTTA
63395054 AAGGTTTTTA
Statistics
Matches: 91, Mismatches: 19, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
6 9 0.10
7 62 0.68
8 20 0.22
ACGTcount: A:0.18, C:0.02, G:0.38, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Found at i:63395022 original size:29 final size:29
Alignment explanation
Indices: 63394982--63395049 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
63394972 TTAAGGGTTG
*
63394982 GGGTTTAAGGGTTATGGGCTAGTGGTTAA
1 GGGTTTAAGGGTTATGGGCTAATGGTTAA
* * *
63395011 GGGTTTATGGGTTATGGGTTAATGGTTTA
1 GGGTTTAAGGGTTATGGGCTAATGGTTAA
63395040 GGGTTTAAGG
1 GGGTTTAAGG
63395050 TTTAAAGGTT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.19, C:0.01, G:0.41, T:0.38
Consensus pattern (29 bp):
GGGTTTAAGGGTTATGGGCTAATGGTTAA
Found at i:63395097 original size:14 final size:14
Alignment explanation
Indices: 63395078--63395123 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
63395068 GTGGTTTAAG
63395078 GTTTAGGGGATATA
1 GTTTAGGGGATATA
* *
63395092 GTTTAGGGTACTTTA
1 GTTTAGGGGA-TATA
63395107 G--TAGGGGATATA
1 GTTTAGGGGATATA
63395119 GTTTA
1 GTTTA
63395124 ATGATTTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
12 4 0.16
13 6 0.24
14 11 0.44
15 4 0.16
ACGTcount: A:0.26, C:0.02, G:0.33, T:0.39
Consensus pattern (14 bp):
GTTTAGGGGATATA
Found at i:63395330 original size:28 final size:28
Alignment explanation
Indices: 63395293--63395397 Score: 73
Period size: 28 Copynumber: 3.9 Consensus size: 28
63395283 TAGGGGATAT
*
63395293 ATATACTTTAGAGTTTAAGGTTAGAGGG
1 ATATAGTTTAGAGTTTAAGGTTAGAGGG
*
63395321 ATATAGTTTAGGGTTT-A---T---GGG
1 ATATAGTTTAGAGTTTAAGGTTAGAGGG
* * * *
63395342 ATATATTTTAGGGTTTAAGGTTATAAGG
1 ATATAGTTTAGAGTTTAAGGTTAGAGGG
63395370 ATATAGTTTA-ATGGTTTAAGGTTTAGAG
1 ATATAGTTTAGA--GTTTAAGG-TTAGAG
63395398 TATTGATTAA
Statistics
Matches: 59, Mismatches: 8, Indels: 18
0.69 0.09 0.21
Matches are distributed among these distances:
21 18 0.31
22 1 0.02
24 1 0.02
25 1 0.02
27 1 0.02
28 25 0.42
29 8 0.14
30 4 0.07
ACGTcount: A:0.30, C:0.01, G:0.28, T:0.41
Consensus pattern (28 bp):
ATATAGTTTAGAGTTTAAGGTTAGAGGG
Found at i:63395342 original size:21 final size:21
Alignment explanation
Indices: 63395318--63395358 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
63395308 TAAGGTTAGA
63395318 GGGATATAGTTTAGGGTTTAT
1 GGGATATAGTTTAGGGTTTAT
*
63395339 GGGATATATTTTAGGGTTTA
1 GGGATATAGTTTAGGGTTTA
63395359 AGGTTATAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (21 bp):
GGGATATAGTTTAGGGTTTAT
Found at i:63395372 original size:49 final size:51
Alignment explanation
Indices: 63395266--63395379 Score: 160
Period size: 49 Copynumber: 2.2 Consensus size: 51
63395256 TATGGTTAGG
*
63395266 GGATATAGTTTAGGGTTTAGGGGATATATATACTTTAGAGTTTAAGGTTAGAG
1 GGATATAGTTTAGGGTTTAGGGGA-ATATATA-TTTAGAGTTTAAGGTTAGAA
* * *
63395319 GGATATAGTTTAGGGTTTATGGG-ATATAT-TTTAGGGTTTAAGGTTATAA
1 GGATATAGTTTAGGGTTTAGGGGAATATATATTTAGAGTTTAAGGTTAGAA
63395368 GGATATAGTTTA
1 GGATATAGTTTA
63395380 ATGGTTTAAG
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
49 29 0.51
51 6 0.11
53 22 0.39
ACGTcount: A:0.30, C:0.01, G:0.29, T:0.40
Consensus pattern (51 bp):
GGATATAGTTTAGGGTTTAGGGGAATATATATTTAGAGTTTAAGGTTAGAA
Found at i:63395391 original size:256 final size:252
Alignment explanation
Indices: 63395112--63395582 Score: 811
Period size: 256 Copynumber: 1.9 Consensus size: 252
63395102 CTTTAGTAGG
63395112 GGATATAGTTTAATGATTTAAGGTTTAGAGTATTGATTAATTAGTGTTATTATTTTGTGGTTTAA
1 GGATATAGTTTAATGATTTAAGGTTTAGAGTATTGATTAATTAGTGTTATTATTTTGTGGTTTAA
63395177 GGATC-AAGAGATATAGTTTAGGGTTATGATTAATTCATACATTTTGTGGTTAAGGCTTAGGGGT
66 GGATCAAAG-GATATAGTTTAGGGTTATGATTAATTCATACATTTTGTGGTTAAGGCTTAGGGGT
*
63395241 TATTATTTTATGGGTTATGGTTAGGGGATATAGTTTAGGGTTTAGGGGATATATATACTTTA-GA
130 TATTATTTTATGGGTTATGGTTAGGGGATATAGTTTAGGGTTTAGAGG----ATATACTTTACG-
63395305 GTTTAAGGTTAGAGGGATATAGTTTAGGGTTTATGGGATATATTTTAGGGTTTAAGGTTATAA
190 GTTTAAGGTTAGAGGGATATAGTTTAGGGTTTATGGGATATATTTTAGGGTTTAAGGTTATAA
*
63395368 GGATATAGTTTAATGGTTTAAGGTTTAGAGTATTGATTAATTAGTGTTATTATTTTGTGGTTTAA
1 GGATATAGTTTAATGATTTAAGGTTTAGAGTATTGATTAATTAGTGTTATTATTTTGTGGTTTAA
63395433 GGATCAAAGGATATAGTTTAGGGTTATGATTAATTCATACATTTTGTGGTTAAGGCTTAGGGGTT
66 GGATCAAAGGATATAGTTTAGGGTTATGATTAATTCATACATTTTGTGGTTAAGGCTTAGGGGTT
* * * *
63395498 ATTGTTTTGTGGTTTATGGTTAGGGGATATAGTTTAGGTTTTAGAGGATATACTTTACGGTTTAA
131 ATTATTTTATGGGTTATGGTTAGGGGATATAGTTTAGGGTTTAGAGGATATACTTTACGGTTTAA
*
63395563 GGTTATAGGGATATAGTTTA
196 GGTTAGAGGGATATAGTTTA
63395583 ATGGTTTAAG
Statistics
Matches: 206, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
252 35 0.17
253 1 0.00
256 167 0.81
257 3 0.01
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (252 bp):
GGATATAGTTTAATGATTTAAGGTTTAGAGTATTGATTAATTAGTGTTATTATTTTGTGGTTTAA
GGATCAAAGGATATAGTTTAGGGTTATGATTAATTCATACATTTTGTGGTTAAGGCTTAGGGGTT
ATTATTTTATGGGTTATGGTTAGGGGATATAGTTTAGGGTTTAGAGGATATACTTTACGGTTTAA
GGTTAGAGGGATATAGTTTAGGGTTTATGGGATATATTTTAGGGTTTAAGGTTATAA
Found at i:63395520 original size:28 final size:28
Alignment explanation
Indices: 63395474--63395532 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
63395464 AATTCATACA
* *
63395474 TTTTGTGGTTAAGGCTTAGGGGTTATTG
1 TTTTGTGGTTAAGGCTTAGGGGATATAG
*
63395502 TTTTGTGGTTTATGG-TTAGGGGATATAG
1 TTTTGTGG-TTAAGGCTTAGGGGATATAG
63395530 TTT
1 TTT
63395533 AGGTTTTAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 22 0.81
29 5 0.19
ACGTcount: A:0.15, C:0.02, G:0.34, T:0.49
Consensus pattern (28 bp):
TTTTGTGGTTAAGGCTTAGGGGATATAG
Found at i:63395546 original size:21 final size:22
Alignment explanation
Indices: 63395517--63395560 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
63395507 TGGTTTATGG
* *
63395517 TTAGGGGATATAGTTTA-GGTT
1 TTAGAGGATATACTTTACGGTT
63395538 TTAGAGGATATACTTTACGGTT
1 TTAGAGGATATACTTTACGGTT
63395560 T
1 T
63395561 AAGGTTATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.25, C:0.05, G:0.27, T:0.43
Consensus pattern (22 bp):
TTAGAGGATATACTTTACGGTT
Found at i:63395566 original size:29 final size:30
Alignment explanation
Indices: 63395529--63395600 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 30
63395519 AGGGGATATA
63395529 GTTT-AGGTTTTAGAGGATATACTTT-ACG
1 GTTTAAGGTTTTAGAGGATATACTTTAACG
* * *
63395557 GTTTAAGGTTATAG-GGATATAGTTTAATG
1 GTTTAAGGTTTTAGAGGATATACTTTAACG
63395586 GTTTAAGG-TTTAGAG
1 GTTTAAGGTTTTAGAG
63395601 TTTTGATTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 18 0.49
29 19 0.51
ACGTcount: A:0.28, C:0.03, G:0.28, T:0.42
Consensus pattern (30 bp):
GTTTAAGGTTTTAGAGGATATACTTTAACG
Found at i:63397054 original size:44 final size:45
Alignment explanation
Indices: 63396959--63397081 Score: 131
Period size: 44 Copynumber: 2.7 Consensus size: 45
63396949 CATAAATGAT
* * *
63396959 CCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAAGATTGAG
1 CCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAAGAATAAG
* * *
63397005 CCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGAATAAT
1 CCATGTAAGTCCATATTAAAATATGGCATTGGAGACAAGAATAAG
* * * *
63397049 TCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 CCATGTAAGTCCATATTAAA-ATATGGCATTGG
63397082 CAGGATATTG
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
44 35 0.55
45 1 0.02
46 28 0.44
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (45 bp):
CCATGTAAGTCCATATTAAAATATGGCATTGGAGACAAGAATAAG
Found at i:63398677 original size:6 final size:6
Alignment explanation
Indices: 63398666--63398695 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
63398656 TGACTTTCTC
63398666 CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT
1 CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT
63398696 TTCTGTCTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (6 bp):
CCCTCT
Found at i:63400472 original size:14 final size:13
Alignment explanation
Indices: 63400449--63400478 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
63400439 ATTACTATAA
63400449 TAATTATATGAAG
1 TAATTATATGAAG
63400462 TAATATATATGAAG
1 TAAT-TATATGAAG
63400476 TAA
1 TAA
63400479 AATTATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (13 bp):
TAATTATATGAAG
Found at i:63400863 original size:183 final size:183
Alignment explanation
Indices: 63400549--63400917 Score: 702
Period size: 183 Copynumber: 2.0 Consensus size: 183
63400539 GATATAGTTC
63400549 CATGTGTCTGTACTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTGTACTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
* *
63400614 ACTATTGTTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATATATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
63400679 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
*
63400732 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTGTACTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
63400797 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
63400862 GTTTTTATATTTGTTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
63400915 CAT
1 CAT
63400918 CTGTTCTAGG
Statistics
Matches: 182, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 182 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (183 bp):
CATGTGTCTGTACTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
Found at i:63401905 original size:53 final size:49
Alignment explanation
Indices: 63401808--63401912 Score: 120
Period size: 53 Copynumber: 2.1 Consensus size: 49
63401798 GAAGGGCCAC
** *
63401808 TTATAAATAATTTTATCAATATAATAATATTGATCACTGTTTAAATATA
1 TTATAAATAATTTTATCAATATAATAATATTGATCACTACTTAAATAAA
* * *
63401857 TTATAACTAATTTTTATCAAAATAGTATTAATATTGATCATTACTTAAATAAA
1 TTATAAATAA-TTTTATC--AATA-TAATAATATTGATCACTACTTAAATAAA
63401910 TTA
1 TTA
63401913 CATAACTCAC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
49 9 0.20
50 7 0.15
52 4 0.09
53 26 0.57
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.45
Consensus pattern (49 bp):
TTATAAATAATTTTATCAATATAATAATATTGATCACTACTTAAATAAA
Found at i:63404539 original size:19 final size:19
Alignment explanation
Indices: 63404511--63404554 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
63404501 TATCCAATTG
*
63404511 AAAGGTGCTAATTTATTTC
1 AAAGGCGCTAATTTATTTC
63404530 AAAGGCGCTAATTTATTTC
1 AAAGGCGCTAATTTATTTC
63404549 AAAGGC
1 AAAGGC
63404555 ATTCCACCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (19 bp):
AAAGGCGCTAATTTATTTC
Found at i:63408624 original size:40 final size:39
Alignment explanation
Indices: 63408580--63408763 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 39
63408570 AAGTGAATAT
* * *
63408580 ATCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAG
1 ATCCGGA-TAAG-TCCCGAAGGCATTCGTGCGAGATACTAA
* *
63408620 ATCCGGGATAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCC-GGATAAGTCCCGAAGGCATTCGTGCGAGATACTAA
* * **
63408660 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCC-GGATAAGTCCCGAAGGCATTCGTGCGAGATACTAA
* * *
63408700 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGATACTAA
1 ATCC-GGATAAGTCCCGAAGGCATTCGTGCGAGATACTAA
* * *
63408739 AACCGGGCTATGTCCCGAAGGCATT
1 ATCC-GGATAAGTCCCGAAGGCATT
63408764 TGAACGAGGA
Statistics
Matches: 128, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.27
40 91 0.71
41 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
ATCCGGATAAGTCCCGAAGGCATTCGTGCGAGATACTAA
Found at i:63408690 original size:80 final size:79
Alignment explanation
Indices: 63408594--63408763 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
63408584 GGACTAAGAT
* * * * *
63408594 CCGAAGGCCTTTGTGCGAGATACTAGATCCGGGATAAGTCCCGAAGGCATTCGTGCGAGTTATTA
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGATAAGTCCCGAAGGCATT-GTGCGAGATACTA
* *
63408659 AATCCGGGTTAAGTC
65 AAACCGGGCTAAGTC
* ** * * *
63408674 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGATACTAA
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGATAAGTCCCGAAGGCATTGTGCGAGATACTAA
*
63408739 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
63408753 CCGAAGGCATT
1 CCGAAGGCATT
63408764 TGAACGAGGA
Statistics
Matches: 76, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
79 33 0.43
80 43 0.57
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGATAAGTCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:63408783 original size:79 final size:80
Alignment explanation
Indices: 63408620--63408798 Score: 200
Period size: 79 Copynumber: 2.3 Consensus size: 80
63408610 GAGATACTAG
* * * * *
63408620 ATCCGGGATAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
63408685 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
63408700 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGATACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
63408764 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
63408779 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
63408799 TACGTGATTT
Statistics
Matches: 82, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.17
79 45 0.55
80 23 0.28
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:63411047 original size:40 final size:42
Alignment explanation
Indices: 63410939--63411182 Score: 214
Period size: 42 Copynumber: 5.7 Consensus size: 42
63410929 ACTGGGCAAA
****
63410939 TTAGCGGCGTTTTTTAAAAAAAGCGCCGCTAAAAGTAC-TGCAAA
1 TTAGCGGCGTTTTTT--AAAAAGCGCCGCTAAAAGT-CTTGGTCT
63410983 TTAGCGGCGTTTTTT-AAAAGCGCCGCTAAAAGTCTTGG-C-
1 TTAGCGGCGTTTTTTAAAAAGCGCCGCTAAAAGTCTTGGTCT
* * * *
63411022 CTATCGG-GTTTTTTTAAAAAGCGCCGCTAAAAATCCTGGTCT
1 TTAGCGGCG-TTTTTTAAAAAGCGCCGCTAAAAGTCTTGGTCT
* * *
63411064 TTAGCGGCG-CTTTTAGAAAAACGCCGCTAAATGTCTTGGTCT
1 TTAGCGGCGTTTTTTA-AAAAGCGCCGCTAAAAGTCTTGGTCT
* * *
63411106 TTAGCGGCGTTTTTTAAGAAAGCGCCGCT-AAAGACTAGGATTT
1 TTAGCGGCGTTTTTTAA-AAAGCGCCGCTAAAAGTCTTGG-TCT
*
63411149 TTAGCGGCGCTTTTTTCAAAAAAACGCCGCTAAA
1 TTAGCGGCG-TTTTTT--AAAAAGCGCCGCTAAA
63411183 GGCAAAAAAA
Statistics
Matches: 166, Mismatches: 20, Indels: 26
0.78 0.09 0.12
Matches are distributed among these distances:
38 1 0.01
39 11 0.07
40 22 0.13
41 26 0.16
42 44 0.27
43 27 0.16
44 21 0.13
45 10 0.06
46 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (42 bp):
TTAGCGGCGTTTTTTAAAAAGCGCCGCTAAAAGTCTTGGTCT
Found at i:63411646 original size:17 final size:17
Alignment explanation
Indices: 63411624--63411661 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
63411614 CATTTTTATT
63411624 ATAAAAATAAATTAGTA
1 ATAAAAATAAATTAGTA
* *
63411641 ATAAAATTATATTAGTA
1 ATAAAAATAAATTAGTA
63411658 ATAA
1 ATAA
63411662 CTGAAGCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (17 bp):
ATAAAAATAAATTAGTA
Found at i:63418112 original size:25 final size:23
Alignment explanation
Indices: 63418094--63418160 Score: 64
Period size: 24 Copynumber: 2.7 Consensus size: 23
63418084 AAATAGATAT
63418094 TATAACAAGCAATTTAAATGAATAG
1 TATAA-AA-CAATTTAAATGAATAG
*
63418119 TATAAAACAATTTAAAAT-AATTAA
1 TATAAAACAATTT-AAATGAA-TAG
63418143 TATACAAAACAATTTAAA
1 TAT--AAAACAATTTAAA
63418161 ATAAAATAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
23 8 0.22
24 11 0.30
25 8 0.22
26 10 0.27
ACGTcount: A:0.58, C:0.07, G:0.04, T:0.30
Consensus pattern (23 bp):
TATAAAACAATTTAAATGAATAG
Found at i:63418190 original size:46 final size:46
Alignment explanation
Indices: 63418120--63418210 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
63418110 AATGAATAGT
* *
63418120 ATAAAACAATTTAAAATAATTAATATACAAAACAATTTAAAATAAA
1 ATAAAACAACTTAAAATAAATAATATACAAAACAATTTAAAATAAA
* * *
63418166 ATAAAGCAACTTAAAATAAATAATATATATAACAATTTAAAATAA
1 ATAAAACAACTTAAAATAAATAATATACAAAACAATTTAAAATAA
63418211 CATATAGAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.64, C:0.07, G:0.01, T:0.29
Consensus pattern (46 bp):
ATAAAACAACTTAAAATAAATAATATACAAAACAATTTAAAATAAA
Found at i:63418210 original size:26 final size:24
Alignment explanation
Indices: 63418009--63418441 Score: 153
Period size: 26 Copynumber: 17.7 Consensus size: 24
63417999 CAAAAGAAAT
* *
63418009 AAATAAATAACATAAAACCATTTA
1 AAATAAATAATATAAAACAATTTA
* * * *
63418033 GAATAAAT-A-ATGAGACAATTTT
1 AAATAAATAATATAAAACAATTTA
*
63418055 AAATAAATAATACATAAAAAATAAGTTTA
1 AAATAAATAAT--AT--AAAACAA-TTTA
* *
63418084 AAATAGATATTATAACAAGCAATTT-
1 AAATAAATAATATAA-AA-CAATTTA
* *
63418109 AAATGAATAGTATAAAACAATTTA
1 AAATAAATAATATAAAACAATTTA
*
63418133 AAATAATTAATATACAAAACAATTTA
1 AAATAAATAATAT--AAAACAATTTA
* *
63418159 AAAT--A-AA-ATAAAGCAACTTA
1 AAATAAATAATATAAAACAATTTA
63418179 AAATAAATAATATATATAACAATTTA
1 AAATAAATAATATA-A-AACAATTTA
* * * *
63418205 AAAT-AA-CATATAGAA-AGTCTA
1 AAATAAATAATATAAAACAATTTA
* * *
63418226 GAATGAATAATATGTAAAAAGAAATTTA
1 AAATAAATAATA--T-AAAA-CAATTTA
* * *
63418254 AAATAAATAATAAAAAATAGTTTA
1 AAATAAATAATATAAAACAATTTA
* * *
63418278 ATATAAATAATAT-ATATAA---A
1 AAATAAATAATATAAAACAATTTA
* *
63418298 AAATAAATAATGTATAAAAGAGTTTA
1 AAATAAATAA--TATAAAACAATTTA
* * *
63418324 AGATAAATAA-ATAAAAAAATGTA
1 AAATAAATAATATAAAACAATTTA
* * *
63418347 AAGA-AATTAATATATAAAATAATTCA
1 AA-ATAAAT-A-ATATAAAACAATTTA
* *
63418373 AAA-CAATATGTATTAAAACAATTTA
1 AAATAAATA-ATA-TAAAACAATTTA
* * *
63418398 AAATGAATACTATAAAAAAATTTTA
1 AAATAAATAATATAAAACAA-TTTA
*
63418423 AAATGAATAACATATAAAA
1 AAATAAAT-A-ATATAAAA
63418442 TAGTTTATAA
Statistics
Matches: 305, Mismatches: 64, Indels: 77
0.68 0.14 0.17
Matches are distributed among these distances:
20 23 0.08
21 7 0.02
22 26 0.09
23 36 0.12
24 56 0.18
25 53 0.17
26 63 0.21
27 11 0.04
28 18 0.06
29 12 0.04
ACGTcount: A:0.61, C:0.05, G:0.06, T:0.29
Consensus pattern (24 bp):
AAATAAATAATATAAAACAATTTA
Found at i:63418267 original size:24 final size:24
Alignment explanation
Indices: 63418240--63418289 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
63418230 GAATAATATG
63418240 TAAAAAGA-AATTTAAAATAAATAA
1 TAAAAA-ATAATTTAAAATAAATAA
* *
63418264 TAAAAAATAGTTTAATATAAATAA
1 TAAAAAATAATTTAAAATAAATAA
63418288 TA
1 TA
63418290 TATATAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 22 0.96
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (24 bp):
TAAAAAATAATTTAAAATAAATAA
Found at i:63418419 original size:24 final size:27
Alignment explanation
Indices: 63418386--63418441 Score: 82
Period size: 25 Copynumber: 2.2 Consensus size: 27
63418376 CAATATGTAT
*
63418386 TAAAACAA-TTTAAAATGAAT-AC-TA
1 TAAAAAAATTTTAAAATGAATAACATA
63418410 TAAAAAAATTTTAAAATGAATAACATA
1 TAAAAAAATTTTAAAATGAATAACATA
63418437 TAAAA
1 TAAAA
63418442 TAGTTTATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 7 0.25
25 12 0.43
26 2 0.07
27 7 0.25
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.29
Consensus pattern (27 bp):
TAAAAAAATTTTAAAATGAATAACATA
Found at i:63420382 original size:45 final size:45
Alignment explanation
Indices: 63420186--63420612 Score: 216
Period size: 44 Copynumber: 9.6 Consensus size: 45
63420176 TTTAATCTAT
* * * ** ** *
63420186 TCCATTGCACCTTCAGGGAAATAAGATTCGCTAAATTCAGTTTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTCAGTCTGC
* * * * * * ** *
63420231 TTCACTGCAACTTTATGGAGATAAGACTT-GTAACTTCAACCTAC
1 TCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTCAGTCTGC
* * *
63420275 TCCACTGTAACTTCAGGGAGATAAG-GTT-CT-TGGCTTTCA-TCTAC
1 TCCACTGCAACTTCAGGGAGATAAGATTTACTAT--C-TTCAGTCTGC
* *
63420319 TCCACTGCAACTTCAGGGAGATAAGATTTACTATATTCAGTCTGT
1 TCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTCAGTCTGC
* * *
63420364 TCCACTGCAACTTTAGGGAAATAAGACTTGTA--AT-TTCA-ACATGC
1 TCCACTGCAACTTCAGGGAGATAAGA-TT-TACTATCTTCAGTC-TGC
* * * * * *
63420408 TCTACTGCAACTTCAGGGAGCTAAGGTTT-GTAGCTTCAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTCAGTCTGC
* ** * * *
63420452 TCTACTGCAACTTCAGAAAGATAAGATTTGCTATCTTTAGTCTGT
1 TCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTCAGTCTGC
* * * * * **
63420497 TCCACTACAACTTCAGGAAGATAAGA-CT-CGTAACTTAAACCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTAC-TATCTTCAGTCTGC
* * * ** * * *
63420541 CCCACTGCAACTTCAGGG-GTATAGGATTT-GTGGCTTTAATATGC
1 TCCACTGCAACTTCAGGGAG-ATAAGATTTACTATCTTCAGTCTGC
63420585 TCCACTGCAACTTCAGGGAGATAAGATT
1 TCCACTGCAACTTCAGGGAGATAAGATT
63420613 CGCCATAATA
Statistics
Matches: 294, Mismatches: 69, Indels: 39
0.73 0.17 0.10
Matches are distributed among these distances:
42 1 0.00
43 9 0.03
44 185 0.63
45 92 0.31
46 4 0.01
47 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (45 bp):
TCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTCAGTCTGC
Found at i:63420420 original size:133 final size:131
Alignment explanation
Indices: 63420169--63420612 Score: 507
Period size: 133 Copynumber: 3.3 Consensus size: 131
63420159 GATTTGTAAC
* * * * * * * *
63420169 TTGTAGCTTTAATCTATTCCATTGCACCTTCAGGGAAATAAGATTCGCTAAATTCAGTTTGCTT-
1 TTGTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGCTATATTCAGTCTG-TTC
* * *
63420233 CACTGCAACTTTATGGAGATAAGACTTGTAACTTCAACCTACTCCACTGTAACTTCAGGGAGATA
65 CACTGCAACTTTA-GGAAATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAG-TA
63420298 AGGT
128 AGGT
* *
63420302 TCT-TGGCTTTCATCTACTCCACTGCAACTTCAGGGAGATAAGATTTACTATATTCAGTCTGTTC
1 T-TGTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGCTATATTCAGTCTGTTC
* * *
63420366 CACTGCAACTTTAGGGAAATAAGACTTGTAATTTCAACATGCTCTACTGCAACTTCAGGGAGCTA
65 CACTGCAACTTTA-GGAAATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAG-TA
63420431 AGGT
128 AGGT
* * * * ** * *
63420435 TTGTAGCTTCAATCTGCTCTACTGCAACTTCAGAAAGATAAGATTTGCTATCTTTAGTCTGTTCC
1 TTGTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGCTATATTCAGTCTGTTCC
* * * * *
63420500 ACTACAACTTCAGGAAGATAAGACTCGTAACTTAAACCTGCCCCACTGCAACTTCAGGG-GTATA
66 ACTGCAACTTTAGGAA-ATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGTA-A
63420564 GGAT
129 GG-T
* *
63420568 TTGTGGCTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGATT
1 TTGTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATT
63420613 CGCCATAATA
Statistics
Matches: 263, Mismatches: 42, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
131 2 0.01
132 11 0.04
133 249 0.95
134 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (131 bp):
TTGTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGCTATATTCAGTCTGTTCC
ACTGCAACTTTAGGAAATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGTAAGG
T
Found at i:63420426 original size:44 final size:43
Alignment explanation
Indices: 63420228--63420610 Score: 229
Period size: 44 Copynumber: 8.7 Consensus size: 43
63420218 AAATTCAGTT
* * * *
63420228 TGCTTCACTGCAACTTTATGGAGATAAGACTTGTAACTTCAACC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTCAA-C
* * * ** *
63420272 TACTCCACTGTAACTTCAGGGAGATAAGGTTCTTG-GCTTTCATC
1 TGCTCCACTGCAACTTCAGGGAGATAA-G-ACTTGTAATTTCAAC
* *
63420316 TACTCCACTGCAACTTCAGGGAGATAAGA-TT-TACTATATTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA--AT-TTCA-AC
* * *
63420361 TGTTCCACTGCAACTTTAGGGAAATAAGACTTGTAATTTCAAC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTCAAC
* * ** **
63420404 ATGCTCTACTGCAACTTCAGGGAGCTAAGGTTTGTAGCTTCAATC
1 -TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTCAA-C
* ** * * *
63420449 TGCTCTACTGCAACTTCAGAAAGATAAGATTTGCT-ATCTTTAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TAAT-TTCA-AC
* * * * * *
63420494 TGTTCCACTACAACTTCAGGAAGATAAGACTCGTAACTTAAACC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTCAA-C
* * * ** *
63420538 TGCCCCACTGCAACTTCAGGG-GTATAGGATTTGTGGCTTT-AATA
1 TGCTCCACTGCAACTTCAGGGAG-ATAAGACTTGT-AATTTCAA-C
63420582 TGCTCCACTGCAACTTCAGGGAGATAAGA
1 TGCTCCACTGCAACTTCAGGGAGATAAGA
63420611 TTCGCCATAA
Statistics
Matches: 261, Mismatches: 59, Indels: 38
0.73 0.16 0.11
Matches are distributed among these distances:
41 2 0.01
43 4 0.02
44 176 0.67
45 71 0.27
46 6 0.02
47 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (43 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTCAAC
Found at i:63428749 original size:19 final size:20
Alignment explanation
Indices: 63428733--63428779 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
63428723 TTATGAAACT
*
63428733 TAATGCATATG-ATGAAATG
1 TAATGCAAATGAATGAAATG
63428752 TAATGCAAATGAATGAAATG
1 TAATGCAAATGAATGAAATG
63428772 -AATGCAAA
1 TAATGCAAA
63428780 AAGGGGCACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 18 0.69
20 8 0.31
ACGTcount: A:0.49, C:0.06, G:0.19, T:0.26
Consensus pattern (20 bp):
TAATGCAAATGAATGAAATG
Found at i:63432583 original size:46 final size:48
Alignment explanation
Indices: 63432485--63432593 Score: 132
Period size: 46 Copynumber: 2.3 Consensus size: 48
63432475 TTATAACGAG
* * *
63432485 CAATTTAAAATGAATAGTATAAAACAATTTAAGATAATTAATATACAAAA
1 CAATTTAAAAT-AATAG-ATAAAACAACTTAAAATAAATAATATACAAAA
* * *
63432535 CAATTTAAAATAA-A-ATAAAGCAACTTAAAATAAATAATATATATAA
1 CAATTTAAAATAATAGATAAAACAACTTAAAATAAATAATATACAAAA
63432581 CAATTTAAAATAA
1 CAATTTAAAATAA
63432594 CATGTAGAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
46 39 0.74
48 1 0.02
49 2 0.04
50 11 0.21
ACGTcount: A:0.61, C:0.06, G:0.04, T:0.29
Consensus pattern (48 bp):
CAATTTAAAATAATAGATAAAACAACTTAAAATAAATAATATACAAAA
Found at i:63432590 original size:26 final size:24
Alignment explanation
Indices: 63432391--63432835 Score: 140
Period size: 26 Copynumber: 17.7 Consensus size: 24
63432381 CAAAAGAATG
* *
63432391 AAATAAATAACATAAAACCATTTA
1 AAATAAATAATATAAAACAATTTA
* * *
63432415 AAATAAAT-A-ATGAGACAATTTT
1 AAATAAATAATATAAAACAATTTA
*
63432437 AAATAAATAATACATAAAAAATAAGTTTA
1 AAATAAATAAT--AT--AAAACAA-TTTA
* * *
63432466 AAATAGATATTATAACGAGCAATTTA
1 AAATAAATAATATAA--AACAATTTA
* *
63432492 AAATGAATAGTATAAAACAATTTA
1 AAATAAATAATATAAAACAATTTA
* *
63432516 AGATAATTAATATACAAAACAATTTA
1 AAATAAATAATAT--AAAACAATTTA
* *
63432542 AAAT--A-AA-ATAAAGCAACTTA
1 AAATAAATAATATAAAACAATTTA
63432562 AAATAAATAATATATATAACAATTTA
1 AAATAAATAATATA-A-AACAATTTA
* * * * *
63432588 AAAT-AA-CATGTAGAA-AGTCTA
1 AAATAAATAATATAAAACAATTTA
* * *
63432609 GAATGAATAATATGTAAAAAGAAATTTA
1 AAATAAATAATA--T-AAAA-CAATTTA
*
63432637 AAATAAATAATAAAAATAAAAAACAGTTTA
1 AAATAAATAAT----AT--AAAACAATTTA
* **
63432667 ATATAAATAATATATATAA-AAAATA
1 AAATAAATAATATA-A-AACAATTTA
* * *
63432692 AAATAATTAATGTATAAAAGAGTTTA
1 AAATAAATAA--TATAAAACAATTTA
* *
63432718 AAATAAATAA-ATAAAGCAATGTA
1 AAATAAATAATATAAAACAATTTA
* * * *
63432741 AAGTAATTAAGATATAAAATAATTCA
1 AAATAAAT-A-ATATAAAACAATTTA
* *
63432767 AAAT-AATATGTATTAAAACAGTTTA
1 AAATAAATA-ATA-TAAAACAATTTA
* * *
63432792 AAATGAATACTATAAAAAAATTTTA
1 AAATAAATAATATAAAACAA-TTTA
*
63432817 AAATGAATAACATATAAAA
1 AAATAAAT-A-ATATAAAA
63432836 TAGTTTATAA
Statistics
Matches: 307, Mismatches: 72, Indels: 81
0.67 0.16 0.18
Matches are distributed among these distances:
20 13 0.04
21 7 0.02
22 24 0.08
23 23 0.07
24 43 0.14
25 50 0.16
26 80 0.26
27 16 0.05
28 17 0.06
29 12 0.04
30 16 0.05
31 5 0.02
32 1 0.00
ACGTcount: A:0.60, C:0.05, G:0.07, T:0.29
Consensus pattern (24 bp):
AAATAAATAATATAAAACAATTTA
Found at i:63432667 original size:30 final size:30
Alignment explanation
Indices: 63432633--63432689 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
63432623 TAAAAAGAAA
63432633 TTTAAAATAAATAATAAAAATAAAAAACAG
1 TTTAAAATAAATAATAAAAATAAAAAACAG
* * *
63432663 TTTAATATAAATAATATATATAAAAAA
1 TTTAAAATAAATAATAAAAATAAAAAA
63432690 TAAAATAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (30 bp):
TTTAAAATAAATAATAAAAATAAAAAACAG
Found at i:63432809 original size:25 final size:27
Alignment explanation
Indices: 63432781--63432835 Score: 78
Period size: 25 Copynumber: 2.1 Consensus size: 27
63432771 AATATGTATT
*
63432781 AAAACAGTTTAAAATGAAT-AC-TATA
1 AAAAAAGTTTAAAATGAATAACATATA
*
63432806 AAAAAATTTTAAAATGAATAACATATA
1 AAAAAAGTTTAAAATGAATAACATATA
63432833 AAA
1 AAA
63432836 TAGTTTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 17 0.65
26 2 0.08
27 7 0.27
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.27
Consensus pattern (27 bp):
AAAAAAGTTTAAAATGAATAACATATA
Found at i:63432842 original size:26 final size:24
Alignment explanation
Indices: 63432780--63432842 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
63432770 TAATATGTAT
*
63432780 TAAAACAGTTTAAAATGAATACTA
1 TAAAAAAGTTTAAAATGAATACTA
*
63432804 TAAAAAAATTTTAAAATGAATAACATA
1 T-AAAAAAGTTTAAAATGAAT-AC-TA
*
63432831 TAAAATAGTTTA
1 TAAAAAAGTTTA
63432843 TAAAAGCTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 1 0.03
25 17 0.53
26 11 0.34
27 3 0.09
ACGTcount: A:0.57, C:0.05, G:0.06, T:0.32
Consensus pattern (24 bp):
TAAAAAAGTTTAAAATGAATACTA
Found at i:63441689 original size:17 final size:17
Alignment explanation
Indices: 63441657--63441690 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
63441647 TTCTTCTCCC
*
63441657 TTTTTGTTCACTTTTGG
1 TTTTTGTTCACCTTTGG
*
63441674 TTTTTGTTCCCCTTTGG
1 TTTTTGTTCACCTTTGG
63441691 CCGAATCTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.18, G:0.18, T:0.62
Consensus pattern (17 bp):
TTTTTGTTCACCTTTGG
Found at i:63441946 original size:21 final size:24
Alignment explanation
Indices: 63441920--63441963 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
63441910 GTTATCGGAT
63441920 TCGTCG-TGG-TAAGTTT-TTGAA
1 TCGTCGTTGGTTAAGTTTCTTGAA
63441941 TCGTCGTTGGTTAAGTTTCTTGA
1 TCGTCGTTGGTTAAGTTTCTTGA
63441964 GTTTTATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 6 0.30
22 3 0.15
23 7 0.35
24 4 0.20
ACGTcount: A:0.16, C:0.11, G:0.27, T:0.45
Consensus pattern (24 bp):
TCGTCGTTGGTTAAGTTTCTTGAA
Found at i:63446228 original size:14 final size:15
Alignment explanation
Indices: 63446201--63446229 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
63446191 TACCTGGTAA
63446201 TGAGCATACATATTT
1 TGAGCATACATATTT
63446216 TGAGCAT-CATATTT
1 TGAGCATACATATTT
63446230 GTTAGCACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (15 bp):
TGAGCATACATATTT
Found at i:63450090 original size:18 final size:18
Alignment explanation
Indices: 63450066--63450106 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
63450056 CATTTTAATT
*
63450066 ATAAAAAATAAATTAAGTA
1 ATAAAAATTAAATT-AGTA
63450085 ATAAAAATTAAATTAGTA
1 ATAAAAATTAAATTAGTA
63450103 ATAA
1 ATAA
63450107 CTAAATCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (18 bp):
ATAAAAATTAAATTAGTA
Found at i:63455405 original size:12 final size:10
Alignment explanation
Indices: 63455382--63455414 Score: 52
Period size: 9 Copynumber: 3.5 Consensus size: 10
63455372 CATTGGTATT
63455382 TTATTATCTA
1 TTATTATCTA
63455392 TTATTATC-A
1 TTATTATCTA
63455401 TTATTAT-TA
1 TTATTATCTA
63455410 TTATT
1 TTATT
63455415 TATTCATCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (10 bp):
TTATTATCTA
Found at i:63455674 original size:7 final size:7
Alignment explanation
Indices: 63455662--63455686 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
63455652 GTCTTTGCTA
63455662 TTTTATT
1 TTTTATT
63455669 TTTTATT
1 TTTTATT
63455676 TTTTATT
1 TTTTATT
63455683 TTTT
1 TTTT
63455687 TTTACATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTATT
Found at i:63457260 original size:37 final size:37
Alignment explanation
Indices: 63457201--63457309 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
63457191 AGCTCAGATG
* *
63457201 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
63457238 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
63457275 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
63457310 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:63457580 original size:47 final size:47
Alignment explanation
Indices: 63457472--63457610 Score: 179
Period size: 47 Copynumber: 3.0 Consensus size: 47
63457462 TTTCACACTA
* * * * *
63457472 GCCATTCAGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
63457519 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * **
63457566 GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
63457611 AAAATCCTAA
Statistics
Matches: 79, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 79 1.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:63465210 original size:25 final size:23
Alignment explanation
Indices: 63465173--63465227 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 23
63465163 TACTCTTTTT
*
63465173 AAAAAAAAGAAAAAGAAAAGAAGA
1 AAAAAAAAAAAAAAGAAAAGAA-A
63465197 AAAAAAAACAAAAAAGAAAAGAAA
1 AAAAAAAA-AAAAAAGAAAAGAAA
63465221 AAAAAAA
1 AAAAAAA
63465228 GAGGCCAAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 16 0.55
25 13 0.45
ACGTcount: A:0.87, C:0.02, G:0.11, T:0.00
Consensus pattern (23 bp):
AAAAAAAAAAAAAAGAAAAGAAA
Found at i:63465730 original size:49 final size:48
Alignment explanation
Indices: 63465663--63465763 Score: 157
Period size: 49 Copynumber: 2.1 Consensus size: 48
63465653 AAGTTTGCTA
* * *
63465663 TCTTTGATTAATTTATTCGTTTCGAGCTATGCTCTCAATCAATTTCTT
1 TCTTTGATTAACTTATTCGTCTCGAGCTATGCTCTCAATCAATTTCCT
*
63465711 TCTTTGTATTAACTTATTCGTCTCGAGTTATGCTCTCAATCAATTTCCT
1 TCTTTG-ATTAACTTATTCGTCTCGAGCTATGCTCTCAATCAATTTCCT
63465760 TCTT
1 TCTT
63465764 GTCCATTATT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
48 6 0.12
49 42 0.88
ACGTcount: A:0.20, C:0.21, G:0.10, T:0.50
Consensus pattern (48 bp):
TCTTTGATTAACTTATTCGTCTCGAGCTATGCTCTCAATCAATTTCCT
Found at i:63466624 original size:181 final size:181
Alignment explanation
Indices: 63466342--63466925 Score: 857
Period size: 181 Copynumber: 3.2 Consensus size: 181
63466332 TGAAGCCACT
* * * * *
63466342 AAACCTTATCTCCTTGAAATAGCAATAGAGTAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
1 AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
* * * *
63466407 TAGTGGAGCAAACTAGAA-ATCA-CGAATCACATTTCCCTAAAGTTGCAGTGGAATAGATTGAAG
66 TAGTGGAGCAGA-TTGAAGAT-AGCGAATCTCATTTCCCTAAAGTTGCAGTGGAACAGATTGAAG
*
63466470 CTATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCATAGC
129 CTATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGC
* * *
63466523 AAACCTTATCTCCCTGAAATAACAGTGGAGTAGGTTGAAGTTAAAGTCTAATCTCCCTGAAGTTA
1 AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
* * * * * *
63466588 CAATGGAGCAGATTGAAGATAGCAAATCTGATTTCCCTAAAGTTGCAGTGAAACAGATTAAAGCT
66 TAGTGGAGCAGATTGAAGATAGCGAATCTCATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCT
* * *
63466653 ATAAATAAATAGATCTTATCTCTCTGAAGTTGCAATAGAGCAGATCATAGA
131 ATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGC
* *
63466704 AAACCTTATCTCCCTGAAATAACAGTGGAGCAAGTTTAAGTTAAAGTCTTATCTCCCTGAAGTTG
1 AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
* * *
63466769 TAGTGGAGTAGACTGAAGATAGCGAATCTCATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCT
66 TAGTGGAGCAGATTGAAGATAGCGAATCTCATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCT
*
63466834 ATAAATAAACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCATAGC
131 ATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGC
* **
63466885 AAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGT
1 AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGT
63466926 CACAAATCCT
Statistics
Matches: 358, Mismatches: 43, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
180 5 0.01
181 353 0.99
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (181 bp):
AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
TAGTGGAGCAGATTGAAGATAGCGAATCTCATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCT
ATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGC
Found at i:63468592 original size:15 final size:15
Alignment explanation
Indices: 63468568--63468691 Score: 74
Period size: 15 Copynumber: 7.7 Consensus size: 15
63468558 TTGGTATTTT
63468568 ATTATCTATTATTATC
1 ATTAT-TATTATTATC
*
63468584 ATTATTATTATTTGTTC
1 ATTATTATTA-TT-ATC
*
63468601 ATCTATTTATTTATTACCC
1 AT-TA-TTA-TTATTA-TC
*
63468620 ATTTTGTACTTATATAT-
1 ATTAT-TA-TTAT-TATC
63468637 ATTATT-TTGATT-TC
1 ATTATTATT-ATTATC
*
63468651 TATTATTATTATTATT
1 -ATTATTATTATTATC
*
63468667 ATTATTATTATTATT
1 ATTATTATTATTATC
63468682 ATTATTATTA
1 ATTATTATTA
63468692 CAAATTGTAC
Statistics
Matches: 87, Mismatches: 8, Indels: 27
0.71 0.07 0.22
Matches are distributed among these distances:
13 1 0.01
14 3 0.03
15 41 0.47
16 11 0.13
17 9 0.10
18 9 0.10
19 10 0.11
20 3 0.03
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.61
Consensus pattern (15 bp):
ATTATTATTATTATC
Found at i:63468657 original size:3 final size:3
Alignment explanation
Indices: 63468651--63468691 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
63468641 TTTTGATTTC
63468651 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
63468692 CAAATTGTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:63469278 original size:28 final size:28
Alignment explanation
Indices: 63469247--63469302 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
63469237 TTCATAAAAG
*
63469247 AAGAATTTTTTAGGCAATGTTCTGCATT
1 AAGAATTTTTTAGGCAATGTTCGGCATT
63469275 AAGAATTTTTTAGGCAATGTTCGGCATT
1 AAGAATTTTTTAGGCAATGTTCGGCATT
63469303 TGTGTAACAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.41
Consensus pattern (28 bp):
AAGAATTTTTTAGGCAATGTTCGGCATT
Found at i:63469580 original size:22 final size:22
Alignment explanation
Indices: 63469534--63469596 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
63469524 CACTTGTCAC
*
63469534 AGGGGC-ACACGCCCAT-CTGGG
1 AGGGGCAACACGCCCATGC-GGA
*
63469555 AGGGGCAACATGCCCATGCGGA
1 AGGGGCAACACGCCCATGCGGA
*
63469577 AGGGGCAACACGCCCGTGCG
1 AGGGGCAACACGCCCATGCG
63469597 AGCATTCCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
21 6 0.17
22 29 0.81
23 1 0.03
ACGTcount: A:0.22, C:0.32, G:0.38, T:0.08
Consensus pattern (22 bp):
AGGGGCAACACGCCCATGCGGA
Found at i:63470759 original size:46 final size:48
Alignment explanation
Indices: 63470689--63470957 Score: 224
Period size: 46 Copynumber: 5.8 Consensus size: 48
63470679 GGTAAGGTGT
*
63470689 CGATGCCATGTCCTAGACACGGTCTTACACTGCTCAT-ATCTC-AAGC
1 CGATGCCATGTCCTAGACATGGTCTTACACTGCTCATCATCTCGAAGC
* * *
63470735 CGATGCCATATCCTAGACATGGTCTTACACTGACT-ATCATTTCGTAGC
1 CGATGCCATGTCCTAGACATGGTCTTACACTG-CTCATCATCTCGAAGC
* * * *
63470783 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CGTCTCGAGGC
1 CGATGCCATGTCCTAGACATGGTCTTACACT-GCTCATCATCTCGAAGC
* * *
63470829 CGATG-CATGTCCCAGACAT-GTCTTACACTAGC-CCTCGTCTC-AATGC
1 CGATGCCATGTCCTAGACATGGTCTTACACT-GCTCATCATCTCGAA-GC
* * **
63470875 CGATGCGATGTCCTAGACATGGTCTTACACTGGCTC-TCATAAT-GTGGC
1 CGATGCCATGTCCTAGACATGGTCTTACACT-GCTCATCAT-CTCGAAGC
* *
63470923 CGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCA
1 CGATGCCATGTCCTAGACATGGTCTTACACT-GCTCA
63470958 CACATGAATG
Statistics
Matches: 185, Mismatches: 25, Indels: 25
0.79 0.11 0.11
Matches are distributed among these distances:
45 1 0.01
46 109 0.59
47 43 0.23
48 30 0.16
49 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTGCTCATCATCTCGAAGC
Found at i:63470907 original size:94 final size:93
Alignment explanation
Indices: 63470689--63470954 Score: 267
Period size: 94 Copynumber: 2.8 Consensus size: 93
63470679 GGTAAGGTGT
* * * * * *
63470689 CGATGCCATGTCCTAGACACGGTCTTACACT-GCTCATATCTC-AAGCCGATGCCATATCCTAGA
1 CGATG-CATGTCCTAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATG-CATGTCCCAGA
* * *
63470752 CATGGTCTTACACT-GACTATCATTTCGTAGC
64 CAT-GTCTTACACTAG-CCATCATCTCATAGC
* *
63470783 CGATGCATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCCAGACA
1 CGATGCATGTCCTAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCAGACA
* *
63470847 TGTCTTACACTAGCCCTCGTCTCA-ATGC
66 TGTCTTACACTAGCCATCATCTCATA-GC
* * *
63470875 CGATGCGATGTCCTAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCCCAA
1 CGATGC-ATGTCCTAGACATGGTCTTACACTGGCT-TACAT-CTCGAGGCCGATGCATGTCCCAG
63470938 ACATGTCTTACACTAGC
63 ACATGTCTTACACTAGC
63470955 TCACACATGA
Statistics
Matches: 146, Mismatches: 18, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
91 1 0.01
92 34 0.23
93 45 0.31
94 64 0.44
95 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (93 bp):
CGATGCATGTCCTAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCAGACA
TGTCTTACACTAGCCATCATCTCATAGC
Found at i:63474303 original size:40 final size:40
Alignment explanation
Indices: 63474200--63474410 Score: 327
Period size: 40 Copynumber: 5.3 Consensus size: 40
63474190 GATGATAACT
* *
63474200 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
63474240 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * *
63474279 GGGCTGAGTCCTGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
63474319 GGTCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
63474359 GGGCTGAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
63474399 GGGCTAAGTCCC
1 GGGCTAAGTCCC
63474411 AACGATGAGG
Statistics
Matches: 156, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 34 0.22
40 122 0.78
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:63481641 original size:46 final size:46
Alignment explanation
Indices: 63481542--63481664 Score: 151
Period size: 46 Copynumber: 2.6 Consensus size: 46
63481532 TATCTCAAGT
* * *
63481542 CGATGCCATGTCCCAGACATGGCCTTACACTGATTATCATCTCGTAGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGATTATCATATCGTAGG
* *
63481590 CGATGCATGTCCAAGACATGTCTTACACTGGCTTA-CATATCG-AGG
1 CGATGCATGTCCCAGACATGTCTTACACT-GATTATCATATCGTAGG
63481635 CTGATGCATGTCCCAGACATGTCTTACACT
1 C-GATGCATGTCCCAGACATGTCTTACACT
63481665 AGCCCTCGTC
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
45 3 0.04
46 42 0.63
47 17 0.25
48 5 0.07
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGATTATCATATCGTAGG
Found at i:63481687 original size:46 final size:45
Alignment explanation
Indices: 63481536--63481713 Score: 135
Period size: 46 Copynumber: 3.8 Consensus size: 45
63481526 AACTCATATC
* * ** *
63481536 TCAAGTCGATGCCATGTCCCAGACATGGCCTTACACTG-ATTATCATC
1 TCAAGTCGATG-CATGTCCAAGACAT-GTCTTACACTGCCCTA-CATA
* * *
63481583 TCGTAGTCGATGCATGTCCAAGACATGTCTTACACTGGCTTACATA
1 TC-AAGTCGATGCATGTCCAAGACATGTCTTACACTGCCCTACATA
* * * * *
63481629 TCGAGGCTGATGCATGTCCCAGACATGTCTTACACTAGCCCT-CGTC
1 TCAAGTC-GATGCATGTCCAAGACATGTCTTACACT-GCCCTACATA
*
63481675 TCAATGTCGATGCGATGTCCTAGACATGGTCTTACACTG
1 TCAA-GTCGATGC-ATGTCCAAGACAT-GTCTTACACTG
63481714 GCTCTCATAA
Statistics
Matches: 109, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
45 3 0.03
46 52 0.48
47 36 0.33
48 18 0.17
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (45 bp):
TCAAGTCGATGCATGTCCAAGACATGTCTTACACTGCCCTACATA
Found at i:63481746 original size:94 final size:92
Alignment explanation
Indices: 63481588--63481761 Score: 253
Period size: 94 Copynumber: 1.9 Consensus size: 92
63481578 TCATCTCGTA
* *
63481588 GTCGATGCATGTCCAAGACATGTCTTACACTGGCTTACATATCGAGGCTGATGCATGTCCCAGAC
1 GTCGATGCATGTCCAAGACATGTCTTACACTGGCTTACATATCGAGGCTAATGCACGTCCCAGAC
*
63481653 ATGTCTTACACTAGCCCTCGTCTCAAT
66 ATATCTTACACTAGCCCTCGTCTCAAT
* *
63481680 GTCGATGCGATGTCCTAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCTAATGCACGTCCC
1 GTCGATGC-ATGTCCAAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGCTAATGCACGTCCC
63481743 AGACATATCTTACACTAGC
62 AGACATATCTTACACTAGC
63481762 TCACACACGA
Statistics
Matches: 73, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
92 8 0.11
93 12 0.16
94 50 0.68
95 3 0.04
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (92 bp):
GTCGATGCATGTCCAAGACATGTCTTACACTGGCTTACATATCGAGGCTAATGCACGTCCCAGAC
ATATCTTACACTAGCCCTCGTCTCAAT
Found at i:63484513 original size:24 final size:25
Alignment explanation
Indices: 63484485--63484531 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
63484475 TAATGTTCAT
*
63484485 TTAACCGAATTGACC-AAATTAAAA
1 TTAACCGAATTAACCAAAATTAAAA
*
63484509 TTAACTGAATTAACCAAAATTAA
1 TTAACCGAATTAACCAAAATTAA
63484532 CCAAATTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.51, C:0.15, G:0.06, T:0.28
Consensus pattern (25 bp):
TTAACCGAATTAACCAAAATTAAAA
Found at i:63485502 original size:5 final size:5
Alignment explanation
Indices: 63485492--63485519 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
63485482 CTGTGTGTTC
63485492 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
63485520 CAAAAATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:63489855 original size:5 final size:5
Alignment explanation
Indices: 63489845--63489887 Score: 86
Period size: 5 Copynumber: 8.6 Consensus size: 5
63489835 ATGTGTGTTC
63489845 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
63489888 CACAATATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:63492076 original size:23 final size:22
Alignment explanation
Indices: 63492025--63492072 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
63492015 TAAAGTATTA
*
63492025 TAAATTTATATGTATTTTTTTG
1 TAAATTTATATGTATTTTTGTG
*
63492047 TAAATTTATAATTTA-TTTTGTG
1 TAAATTTAT-ATGTATTTTTGTG
63492069 TAAA
1 TAAA
63492073 ATTTGACTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.58
Consensus pattern (22 bp):
TAAATTTATATGTATTTTTGTG
Found at i:63492584 original size:11 final size:9
Alignment explanation
Indices: 63492555--63492580 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
63492545 AACAAAAATT
63492555 TAATTTTTA
1 TAATTTTTA
63492564 TAATTTTTA
1 TAATTTTTA
63492573 TAATTTTT
1 TAATTTTT
63492581 TTATTTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (9 bp):
TAATTTTTA
Found at i:63492807 original size:24 final size:24
Alignment explanation
Indices: 63492780--63492825 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
63492770 AAGCGTTGAC
63492780 TCAATTGTTAAAGTCAAAAGCTAG
1 TCAATTGTTAAAGTCAAAAGCTAG
63492804 TCAATTGTTAAAGTCAAAAGCT
1 TCAATTGTTAAAGTCAAAAGCT
63492826 TTAGCTCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.30
Consensus pattern (24 bp):
TCAATTGTTAAAGTCAAAAGCTAG
Found at i:63495865 original size:31 final size:31
Alignment explanation
Indices: 63495830--63495897 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
63495820 CTTAATACTC
* *
63495830 TAGTGACTTAAAT-AAAATATTTTGAATAGTT
1 TAGTGACTTAAATGAAAA-ATTTCGAATAATT
*
63495861 TAGTGACTTAAATGAAAACTTTCGAATAATT
1 TAGTGACTTAAATGAAAAATTTCGAATAATT
63495892 TAGTGA
1 TAGTGA
63495898 TCAAATTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 29 0.88
32 4 0.12
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.38
Consensus pattern (31 bp):
TAGTGACTTAAATGAAAAATTTCGAATAATT
Found at i:63497825 original size:17 final size:17
Alignment explanation
Indices: 63497803--63497848 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
63497793 GCACGATTCA
63497803 ATTTTTTATATTAAAAT
1 ATTTTTTATATTAAAAT
*
63497820 ATTTTTTA-AATAAAAT
1 ATTTTTTATATTAAAAT
*
63497836 ATTATTTTTTATT
1 ATT-TTTTATATT
63497849 TTCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 10 0.42
17 12 0.50
18 2 0.08
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTTTTATATTAAAAT
Found at i:63498026 original size:23 final size:24
Alignment explanation
Indices: 63497999--63498043 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
63497989 AAAATCAAAT
*
63497999 GAGC-ACATACACAAAATTTAGCA
1 GAGCAACAGACACAAAATTTAGCA
63498022 GAGCAACAGACACAAAATTTAG
1 GAGCAACAGACACAAAATTTAG
63498044 TTGAACGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.49, C:0.20, G:0.16, T:0.16
Consensus pattern (24 bp):
GAGCAACAGACACAAAATTTAGCA
Found at i:63498577 original size:140 final size:134
Alignment explanation
Indices: 63498325--63499169 Score: 936
Period size: 131 Copynumber: 6.3 Consensus size: 134
63498315 CAAAACAGTG
* * * * **
63498325 CTAAGACGACAGTTATGGGGCAACACCTTT-CTAAGTGTTGCGATAGACTGGTCAACATACATTT
1 CTAAGACGACACTTTTGGGGCGACA-CTTTCCTAAGTGTTGCG---GACTAG--AAC-TACGCTT
* * * *
63498389 TCGGCAACTTTTTGTATAAGGGTTGCGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGGC
59 TCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGC
*
63498454 TTTGTCTAGTC
124 TTTGTGTAGTC
* * * *
63498465 CTAAGACGACA-TTTATGAGGCAACACTTTTCTAAGTGTTGCGATAGACTAGCCAACATACACTT
1 CTAAGACGACACTTT-TGGGGCGACACTTTCCTAAGTGTTGCG---GACTAG--AAC-TACGCTT
* * * * *
63498529 TCGGCAACTCTTTGTATAAGGGTTGGGATAAGCATGCCTAAAGCAACGCTTAAATAAGAGTTGG-
59 TCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGC
63498593 TGTTGTGTAGTC
124 T-TTGTGTAGTC
* * *
63498605 CTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTT--GGACTA-TACTACGCTTTCGCCAA
1 CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGCGGACTAGAACTACGCTTTCGGCAA
* * *
63498667 CTATTTGTATAAGGGTTGCGATATGTATGCCTACGGCAAAGCTTGAATAAGAGTTGGCTTTTGTG
66 CTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGC-TTTGTG
63498732 TAGTC
130 TAGTC
* * * *
63498737 ATAA-ATGACACTTTTGTGGCGACACTTTCCTAAGTGTTG-GGA-TA-AACTACACTTT-GGCAA
1 CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGCGGACTAGAACTACGCTTTCGGCAA
* * *
63498797 CTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATAAGAGTTGGAGTTTGTG
66 CTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGG-CTTTGTG
63498862 TAGTC
130 TAGTC
* * * *
63498867 CTAGGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGC--A-TAG-ACTACGCTTTCGTCAA
1 CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGCGGACTAGAACTACGCTTTCGGCAA
* * *
63498928 CTCTTTATATAAGGGTTAG-GATATGTATGCCTAAGGCAATGCTTGAATAAGAGTTGGTTTTTTG
66 CTCTTTGTATAAGGGTT-GCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGG--CTTTG
63498992 TGTAGTC
128 TGTAGTC
* * *
63498999 CTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGCTGC-GA-TA-AACTGCGCTTTCGGCAA
1 CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGCGGACTAGAACTACGCTTTCGGCAA
** *
63499061 CTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAGCAAGAGTTGGCTTTTGTC
66 CTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGC-TTTGTG
63499126 TAGTC
130 TAGTC
* *
63499131 CTAAGACTACAGTTTTGGGGCGACACTTTCCTAAGTGTT
1 CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTT
63499170 CAGATAGACC
Statistics
Matches: 627, Mismatches: 60, Indels: 44
0.86 0.08 0.06
Matches are distributed among these distances:
130 83 0.13
131 191 0.30
132 114 0.18
133 69 0.11
135 5 0.01
138 1 0.00
139 7 0.01
140 154 0.25
141 3 0.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (134 bp):
CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGCGGACTAGAACTACGCTTTCGGCAA
CTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTGTGT
AGTC
Found at i:63498923 original size:261 final size:263
Alignment explanation
Indices: 63498387--63499169 Score: 1013
Period size: 261 Copynumber: 2.9 Consensus size: 263
63498377 CAACATACAT
* * * * * *
63498387 TTTCGGCAACTTTTTGTATAAGGGTTGCGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTG
1 TTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAAAGCTTGAATAAGAGTTG
* * * *
63498452 GC-TTTGTCTAGTCCTAAGACGACA-TTTATGAGGCAACACTTTTCTAAGTGTTGCGATAGACTA
66 GCTTTTGTGTAGTCCTAAGACGACACTTT-TGTGGCGACACTTTCCTAAGTGTTG-G---GA-TA
* * * *
63498515 GCCAACATACACTTTCGGCAACTCTTTGTATAAGGGTTGGGATAAGCATGCCTAAAGCAACGCTT
125 ---AAC-TACACTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTT
* * *
63498580 AAATAAGAGTTGGTG-TTGTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTT
186 -GATAAGAGTTGGAGTTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTT
* *
63498644 GGACTATACTACGC
250 GCACTAGACTACGC
*
63498658 TTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTACGGCAAAGCTTGAATAAGAGTTG
1 TTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAAAGCTTGAATAAGAGTTG
* *
63498723 GCTTTTGTGTAGTCATAA-ATGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTAC
66 GCTTTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTAC
*
63498787 ACTTT-GGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATAAGAGT
131 ACTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTG-ATAAGAGT
* * *
63498851 TGGAGTTTGTGTAGTCCTAGGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGCA-TAGACT
195 TGGAGTTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGCACTAGACT
63498915 ACGC
260 ACGC
* * * *
63498919 TTTCGTCAACTCTTTATATAAGGGTTAG-GATATGTATGCCTAAGGCAATGCTTGAATAAGAGTT
1 TTTCGCCAACTATTTGTATAAGGGTT-GCGATATGTATGCCTAAGGCAAAGCTTGAATAAGAGTT
* * *
63498983 GGTTTTTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGCTGCGATAAACT
65 GG-CTTTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACT
* * *
63499048 GCGCTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAGCAAGA
129 ACACTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGA-TAAGA
** * * *
63499113 GTTGGCTTTTGTCTAGTCCTAAGACTACAGTTTTGGGGCGACACTTTCCTAAGTGTT
193 GTTGGAGTTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTT
63499170 CAGATAGACC
Statistics
Matches: 455, Mismatches: 48, Indels: 25
0.86 0.09 0.05
Matches are distributed among these distances:
261 124 0.27
262 71 0.16
263 50 0.11
264 102 0.22
266 2 0.00
267 2 0.00
270 1 0.00
271 87 0.19
272 16 0.04
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (263 bp):
TTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAAAGCTTGAATAAGAGTTG
GCTTTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAAACTAC
ACTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGATAAGAGTT
GGAGTTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGCACTAGACTA
CGC
Found at i:63499531 original size:7 final size:7
Alignment explanation
Indices: 63499484--63499559 Score: 71
Period size: 7 Copynumber: 10.4 Consensus size: 7
63499474 GGTGTAAGGT
63499484 TTTAGGG
1 TTTAGGG
* *
63499491 TTTTGTG
1 TTTAGGG
63499498 TTTATGGG
1 TTTA-GGG
*
63499506 TTTGGGG
1 TTTAGGG
**
63499513 TTTAAGAT
1 TTT-AGGG
63499521 TTTAGGG
1 TTTAGGG
*
63499528 TTTAGAG
1 TTTAGGG
63499535 TTTAGGG
1 TTTAGGG
63499542 TTTAGGG
1 TTTAGGG
63499549 TTTAAGGG
1 TTT-AGGG
63499557 TTT
1 TTT
63499560 TTTTAACATA
Statistics
Matches: 54, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
7 38 0.70
8 16 0.30
ACGTcount: A:0.16, C:0.00, G:0.36, T:0.49
Consensus pattern (7 bp):
TTTAGGG
Found at i:63499558 original size:15 final size:14
Alignment explanation
Indices: 63499484--63499559 Score: 71
Period size: 15 Copynumber: 5.2 Consensus size: 14
63499474 GGTGTAAGGT
* *
63499484 TTTAGGGTTTTGTG
1 TTTAGGGTTTAGGG
*
63499498 TTTATGGGTTTGGGG
1 TTTA-GGGTTTAGGG
**
63499513 TTTAAGATTTTAGGG
1 TTT-AGGGTTTAGGG
*
63499528 TTTAGAGTTTAGGG
1 TTTAGGGTTTAGGG
63499542 TTTAGGGTTTAAGGG
1 TTTAGGGTTT-AGGG
63499557 TTT
1 TTT
63499560 TTTTAACATA
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
14 23 0.44
15 28 0.54
16 1 0.02
ACGTcount: A:0.16, C:0.00, G:0.36, T:0.49
Consensus pattern (14 bp):
TTTAGGGTTTAGGG
Found at i:63500255 original size:22 final size:21
Alignment explanation
Indices: 63500230--63500286 Score: 51
Period size: 22 Copynumber: 2.6 Consensus size: 21
63500220 TCAAAAAATT
63500230 TATAAAATAAAAATAGAAAAAA
1 TATAAAATAAAAAT-GAAAAAA
***
63500252 TATATGTTAAAAATGAAAAAA
1 TATAAAATAAAAATGAAAAAA
* *
63500273 AATTAAAACAAAAA
1 TA-TAAAATAAAAA
63500287 CTTTTCAGTA
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
21 8 0.31
22 18 0.69
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.21
Consensus pattern (21 bp):
TATAAAATAAAAATGAAAAAA
Found at i:63500879 original size:35 final size:34
Alignment explanation
Indices: 63500833--63500966 Score: 214
Period size: 35 Copynumber: 3.9 Consensus size: 34
63500823 GCAAACCTAT
63500833 TGCATCTGCCGTCCACTGCCTGCCCCAGCCATCGG
1 TGCATCTGCCGTCCACTGCCTGCCCCAGCCA-CGG
63500868 TGCATCTGCCGTCCACTGCCTGCCCCAGCCACGGG
1 TGCATCTGCCGTCCACTGCCTGCCCCAGCCAC-GG
*
63500903 TGCATCTGCCGTCCATTGCCTGCCCCAGCCACCGG
1 TGCATCTGCCGTCCACTGCCTGCCCCAGCCA-CGG
* *
63500938 TGCATCTGCCGTCCACCGCCTGCTCCAGC
1 TGCATCTGCCGTCCACTGCCTGCCCCAGC
63500967 TACTGGTAAA
Statistics
Matches: 93, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
34 1 0.01
35 91 0.98
36 1 0.01
ACGTcount: A:0.11, C:0.46, G:0.23, T:0.19
Consensus pattern (34 bp):
TGCATCTGCCGTCCACTGCCTGCCCCAGCCACGG
Found at i:63503663 original size:11 final size:11
Alignment explanation
Indices: 63503631--63503663 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
63503621 GCTTAGTAAA
*
63503631 CCTTTTCTTTT
1 CCTTTTTTTTT
63503642 CCTTTTTTTTT
1 CCTTTTTTTTT
63503653 CCTTTTTTTTT
1 CCTTTTTTTTT
63503664 AAAAATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (11 bp):
CCTTTTTTTTT
Found at i:63506074 original size:46 final size:46
Alignment explanation
Indices: 63506022--63506113 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
63506012 TGGATAGAAA
63506022 AATTATACTTATTTGATATATAAGTCAGATTTGAGTTTTAAAAGTT
1 AATTATACTTATTTGATATATAAGTCAGATTTGAGTTTTAAAAGTT
63506068 AATTATACTTATTTGATATATAAGTCAGATTTGAGTTTTAAAAGTT
1 AATTATACTTATTTGATATATAAGTCAGATTTGAGTTTTAAAAGTT
63506114 TGTAATATAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.37, C:0.04, G:0.13, T:0.46
Consensus pattern (46 bp):
AATTATACTTATTTGATATATAAGTCAGATTTGAGTTTTAAAAGTT
Found at i:63510986 original size:74 final size:75
Alignment explanation
Indices: 63510903--63511054 Score: 186
Period size: 75 Copynumber: 2.0 Consensus size: 75
63510893 CAGTTGTCTC
* * * *
63510903 ATAATTTTTTTG-TGTCATG-GGAATCAAGTTGACAACATGTT-GCAA-TGTGTTGATTGCTTTT
1 ATAA-TTTTTTGATGTCATGTGAAAT-AAGTTGACAACATGTTCGCAACT-TGTTGACTACTTCT
63510964 ATAAGGATTTTGT
63 ATAAGGATTTTGT
* * *
63510977 ATAATTTTTTGATGTCATGTGAAATAGGTTGATAACATGTTCGCAACTTGTTGACTACTTCTATT
1 ATAATTTTTTGATGTCATGTGAAATAAGTTGACAACATGTTCGCAACTTGTTGACTACTTCTATA
63511042 AGGATTTTGT
66 AGGATTTTGT
63511052 ATA
1 ATA
63511055 TAAATTACTA
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
73 7 0.10
74 25 0.37
75 34 0.51
76 1 0.01
ACGTcount: A:0.27, C:0.09, G:0.20, T:0.44
Consensus pattern (75 bp):
ATAATTTTTTGATGTCATGTGAAATAAGTTGACAACATGTTCGCAACTTGTTGACTACTTCTATA
AGGATTTTGT
Found at i:63511311 original size:35 final size:35
Alignment explanation
Indices: 63511248--63511331 Score: 109
Period size: 35 Copynumber: 2.4 Consensus size: 35
63511238 GATAAAGATC
* *
63511248 TATCCCAACCTTTTTAAGTTTGCCTTAGACGGGTT
1 TATCCCAACCATTTTAAGGTTGCCTTAGACGGGTT
* *
63511283 TA-CCCTAACCATTTTAAGGTTGCTTTAGATGGGTT
1 TATCCC-AACCATTTTAAGGTTGCCTTAGACGGGTT
63511318 TATCCCAA-CATTTT
1 TATCCCAACCATTTT
63511332 TTAAGTTGCC
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
34 9 0.21
35 31 0.72
36 3 0.07
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.40
Consensus pattern (35 bp):
TATCCCAACCATTTTAAGGTTGCCTTAGACGGGTT
Found at i:63511340 original size:35 final size:34
Alignment explanation
Indices: 63511248--63511343 Score: 106
Period size: 35 Copynumber: 2.7 Consensus size: 34
63511238 GATAAAGATC
*
63511248 TATCCCAACCTTTTTAAGTTTGCCTTAGACGGGTT
1 TATCCCAACATTTTTAAG-TTGCCTTAGACGGGTT
* *
63511283 TA-CCCTAACCA-TTTTAAGGTTGCTTTAGATGGGTT
1 TATCCC-AA-CATTTTTAA-GTTGCCTTAGACGGGTT
63511318 TATCCCAACATTTTTTAAGTTGCCTT
1 TATCCCAACA-TTTTTAAGTTGCCTT
63511344 GGAAAAGGTC
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
34 5 0.10
35 35 0.69
36 11 0.22
ACGTcount: A:0.22, C:0.21, G:0.16, T:0.42
Consensus pattern (34 bp):
TATCCCAACATTTTTAAGTTGCCTTAGACGGGTT
Found at i:63511566 original size:108 final size:106
Alignment explanation
Indices: 63511242--63511572 Score: 274
Period size: 108 Copynumber: 3.1 Consensus size: 106
63511232 ACATGAGATA
* * * * * * *
63511242 AAGATCTATCCCAACCTTTTTAAGTTTGCCTTAGACGGGTTTA-CCCTAACCATTTTAAGGTTGC
1 AAGATCTATCGCAACCTTTTTAGGGTT-CCTTAAACGGGTCTATCACTAACCTTTTTAAGGTTGC
** * * * *
63511306 TTTAGATGGGTTTATCCCAA-CATTTTTTAAGTTGCCTTGGAA
65 TTTAGACAGGTCTAT-CCAACCTTTTTTTAAGTTGCCTTAGAC
* * * * ** *
63511348 AAGGTCTATCGCAACCCTTTTAGGGTTGCTGTAAACGGGTCTATCGC-AAAATTTTTAACGTTG-
1 AAGATCTATCGCAACCTTTTTAGGGTTCCT-TAAACGGGTCTATCACTAACCTTTTTAAGGTTGC
* * * ** * *
63511411 TCCTAGACAGGTCAATCGCAACATTTTCTAAAAGTTTCCTTAAAC
65 T-TTAGACAGGTCTATC-CAACCTTTT-TTTAAGTTGCCTTAGAC
**
63511456 AAGATCTATCGCAACCTTTTTAGGGTTACCTTAAACGAATCTATCACTAACCTTTTTAAGGTTGC
1 AAGATCTATCGCAACCTTTTTAGGGTT-CCTTAAACGGGTCTATCACTAACCTTTTTAAGGTTGC
* *
63511521 TTTAGACAAGTCTATCCAACCTTTTTTTAAGGTTGCCATAGAC
65 TTTAGACAGGTCTATCCAACCTTTTTTTAA-GTTGCCTTAGAC
*
63511564 AAGGTCTAT
1 AAGATCTAT
63511573 TGTAACATTT
Statistics
Matches: 170, Mismatches: 45, Indels: 18
0.73 0.19 0.08
Matches are distributed among these distances:
105 4 0.02
106 56 0.33
107 8 0.05
108 74 0.44
109 27 0.16
110 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (106 bp):
AAGATCTATCGCAACCTTTTTAGGGTTCCTTAAACGGGTCTATCACTAACCTTTTTAAGGTTGCT
TTAGACAGGTCTATCCAACCTTTTTTTAAGTTGCCTTAGAC
Found at i:63511584 original size:37 final size:37
Alignment explanation
Indices: 63511508--63511745 Score: 148
Period size: 38 Copynumber: 6.4 Consensus size: 37
63511498 ATCACTAACC
** *
63511508 TTTTTAAGGTTGCTTTAGACAA-GTCTA-TCCAACCTT
1 TTTTTAAGGTTGCCGTAGACAAGGTCTATTGCAA-CTT
* *
63511544 TTTTTAAGGTTGCCATAGACAAGGTCTATTGTAACATT
1 TTTTTAAGGTTGCCGTAGACAAGGTCTATTGCAAC-TT
** * * *
63511582 TTTAAAATGTTGTCGTAGAC-AGGTCTATCGCAACTT
1 TTTTTAAGGTTGCCGTAGACAAGGTCTATTGCAACTT
* * * ***
63511618 TTTTTCAAGGTTGCCGTAAACAAGATATACCACAACTT
1 TTTTT-AAGGTTGCCGTAGACAAGGTCTATTGCAACTT
* * * **
63511656 TTTTAAAAGGTTGCCGTAGATAAAGTCTATAACAA-TT
1 TTTT-TAAGGTTGCCGTAGACAAGGTCTATTGCAACTT
* *
63511693 TTTATTAAGGGTTGCCGTAAACAAGG-CT-TCTCGCAAC-C
1 TTT-TTAA-GGTTGCCGTAGACAAGGTCTAT-T-GCAACTT
63511731 TTTTTAAGGTTGCCG
1 TTTTTAAGGTTGCCG
63511746 AAAACGAATC
Statistics
Matches: 156, Mismatches: 35, Indels: 22
0.73 0.16 0.10
Matches are distributed among these distances:
36 34 0.22
37 43 0.28
38 79 0.51
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (37 bp):
TTTTTAAGGTTGCCGTAGACAAGGTCTATTGCAACTT
Found at i:63511622 original size:38 final size:36
Alignment explanation
Indices: 63511294--63511632 Score: 118
Period size: 36 Copynumber: 9.4 Consensus size: 36
63511284 ACCCTAACCA
** ** * * *
63511294 TTTTAAGGTTGCTTTAGATGGGTTTATCCCAACATT
1 TTTTAAGGTTGCCATAGACAGGTCTATCGCAACTTT
* * * **
63511330 TTTTAA-GTTGCCTTGGAAAAGGTCTATCGCAAC-CC
1 TTTTAAGGTTGCCATAG-ACAGGTCTATCGCAACTTT
* ** * * **
63511365 TTTTAGGGTTGCTGTAAACGGGTCTATCGCAA-AAT
1 TTTTAAGGTTGCCATAGACAGGTCTATCGCAACTTT
* *
63511400 TTTTAACGTTGTCC-TAGACAGGTCAATCGCAACATTT
1 TTTTAAGGTTG-CCATAGACAGGTCTATCGCAAC-TTT
* * * * * * * *
63511437 TCTAAAAGTTTCCTTAAACAAGATCTATCGCAAC-CT
1 TTTTAAGGTTGCCATAGAC-AGGTCTATCGCAACTTT
* * * * * * *
63511473 TTTTAGGGTTACCTTAAAC-GAATCTATCACTAAC-CT
1 TTTTAAGGTTGCCATAGACAG-GTCTATCGC-AACTTT
** *
63511509 TTTTAAGGTTGCTTTAGACAAGTCTATC-CAACCTTT
1 TTTTAAGGTTGCCATAGACAGGTCTATCGCAA-CTTT
* *
63511545 TTTTAAGGTTGCCATAGACAAGGTCTATTGTAACATTT
1 TTTTAAGGTTGCCATAGAC-AGGTCTATCGCAAC-TTT
** * * *
63511583 TTAAAATGTTGTCGTAGACAGGTCTATCGCAACTTT
1 TTTTAAGGTTGCCATAGACAGGTCTATCGCAACTTT
63511619 TTTTCAAGGTTGCC
1 TTTT-AAGGTTGCC
63511633 GTAAACAAGA
Statistics
Matches: 224, Mismatches: 62, Indels: 33
0.70 0.19 0.10
Matches are distributed among these distances:
34 3 0.01
35 60 0.27
36 91 0.41
37 39 0.17
38 31 0.14
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (36 bp):
TTTTAAGGTTGCCATAGACAGGTCTATCGCAACTTT
Found at i:63511660 original size:75 final size:73
Alignment explanation
Indices: 63511513--63511717 Score: 196
Period size: 75 Copynumber: 2.7 Consensus size: 73
63511503 TAACCTTTTT
** * * * * ****
63511513 AAGGTTGCTTTAGACAAGTCTATCCAACCTTTTTTTAAGGTTGCCATAGACAAGGTCTATTGTAA
1 AAGGTTGCCGTAGACAAGTCTATCCAA-CTTTTTTTAAGGTTGCCGTAAACAAGATATACCACAA
63511578 CATTTTTAA
65 CATTTTTAA
* * *
63511587 AATGTTGTCGTAGACAGGTCTATCGCAACTTTTTTTCAAGGTTGCCGTAAACAAGATATACCACA
1 AAGGTTGCCGTAGACAAGTCTATC-CAACTTTTTTT-AAGGTTGCCGTAAACAAGATATACCACA
*
63511652 ACTTTTTTAA
64 ACATTTTTAA
* *
63511662 AAGGTTGCCGTAGATAAAGTCTATAACAA-TTTTTATTAAGGGTTGCCGTAAACAAG
1 AAGGTTGCCGTAGA-CAAGTCTAT-CCAACTTTTT-TTAA-GGTTGCCGTAAACAAG
63511718 GCTTCTCGCA
Statistics
Matches: 106, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
74 27 0.25
75 51 0.48
76 28 0.26
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Consensus pattern (73 bp):
AAGGTTGCCGTAGACAAGTCTATCCAACTTTTTTTAAGGTTGCCGTAAACAAGATATACCACAAC
ATTTTTAA
Found at i:63511863 original size:35 final size:36
Alignment explanation
Indices: 63511788--63511877 Score: 119
Period size: 35 Copynumber: 2.5 Consensus size: 36
63511778 CTCTAAACGA
* *
63511788 GTCTATCGCAACCATTTTTAACAGTTGTCTTAAATTG
1 GTCTATCGCAACC-TTTTTAACAGTTGTATTAAATGG
* **
63511825 GTCTATCGCAACCCTTTTATGA-TTGTATTAAATGG
1 GTCTATCGCAACCTTTTTAACAGTTGTATTAAATGG
63511860 GTCTATCGCAACCTTTTT
1 GTCTATCGCAACCTTTTT
63511878 CAAAGGTTGC
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
35 28 0.60
36 6 0.13
37 13 0.28
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.41
Consensus pattern (36 bp):
GTCTATCGCAACCTTTTTAACAGTTGTATTAAATGG
Found at i:63512561 original size:14 final size:15
Alignment explanation
Indices: 63512528--63512565 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
63512518 AAGGATGAAC
*
63512528 ATAAAAATATACGAA
1 ATAAAAATATACAAA
*
63512543 TTAAAAATATA-AAA
1 ATAAAAATATACAAA
63512557 ATAAAAATA
1 ATAAAAATA
63512566 GAAATAGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (15 bp):
ATAAAAATATACAAA
Found at i:63513519 original size:26 final size:28
Alignment explanation
Indices: 63513490--63513547 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 28
63513480 TATATATTTA
*
63513490 AATATTTTTA-AT-AAAAATAAAAAAAT
1 AATATTTTTATATAAAAAACAAAAAAAT
*
63513516 AATA-TTTTATTTAAAAAACAAAAAAAT
1 AATATTTTTATATAAAAAACAAAAAAAT
63513543 AATAT
1 AATAT
63513548 AAAAAATTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 5 0.19
26 5 0.19
27 17 0.63
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (28 bp):
AATATTTTTATATAAAAAACAAAAAAAT
Found at i:63515414 original size:18 final size:18
Alignment explanation
Indices: 63515378--63515432 Score: 83
Period size: 18 Copynumber: 2.9 Consensus size: 18
63515368 AATCATATCT
*
63515378 TCTAAGATTGCTTATCATA
1 TCTAAGATTGC-AATCATA
63515397 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
63515415 TCTAAGATTGCATATCAT
1 TCTAAGATTGCA-ATCAT
63515433 TGAAGATTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
18 18 0.53
19 16 0.47
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:63517240 original size:8 final size:9
Alignment explanation
Indices: 63517212--63517237 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
63517202 AGGTCCTTTA
63517212 AAAATTTTT
1 AAAATTTTT
63517221 AAAATTTTT
1 AAAATTTTT
63517230 AAAATTTT
1 AAAATTTT
63517238 AAATTAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
AAAATTTTT
Found at i:63517619 original size:17 final size:18
Alignment explanation
Indices: 63517586--63517624 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
63517576 AAGTTATAAG
63517586 ATAATTTTATATA-TTTT
1 ATAATTTTATATATTTTT
* *
63517603 ATAATTTTATGTCTTTTT
1 ATAATTTTATATATTTTT
63517621 ATAA
1 ATAA
63517625 CAAATCATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (18 bp):
ATAATTTTATATATTTTT
Found at i:63517883 original size:31 final size:31
Alignment explanation
Indices: 63517848--63517921 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
63517838 CAGTAAAGTA
* *
63517848 ACTAAAATTAACAATTTATCTAATGGAAATG
1 ACTAAAATTAACAACTTATCTAACGGAAATG
* * * *
63517879 ACTAAAATTGATAACTTCTCTAACGGGAATG
1 ACTAAAATTAACAACTTATCTAACGGAAATG
63517910 ACTAAAA-TAACA
1 ACTAAAATTAACA
63517922 TTTTTTTTAA
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
30 3 0.09
31 32 0.91
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.28
Consensus pattern (31 bp):
ACTAAAATTAACAACTTATCTAACGGAAATG
Found at i:63518353 original size:14 final size:14
Alignment explanation
Indices: 63518334--63518363 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
63518324 GAACAACATG
63518334 GGGTAAGACAAGGA
1 GGGTAAGACAAGGA
63518348 GGGTAAGACAAGGA
1 GGGTAAGACAAGGA
63518362 GG
1 GG
63518364 AGGTTATGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.07, G:0.47, T:0.07
Consensus pattern (14 bp):
GGGTAAGACAAGGA
Found at i:63519974 original size:7 final size:6
Alignment explanation
Indices: 63519933--63519973 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
63519923 ATAATTTAAT
*
63519933 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
63519974 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:63519974 original size:20 final size:20
Alignment explanation
Indices: 63519936--63519975 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
63519926 ATTTAATAAA
**
63519936 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
63519956 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
63519976 ATATAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:63520011 original size:9 final size:9
Alignment explanation
Indices: 63519993--63520096 Score: 91
Period size: 9 Copynumber: 11.6 Consensus size: 9
63519983 TTTATACAAA
*
63519993 TAATTTGGT
1 TAATTCGGT
63520002 TAATTCGGT
1 TAATTCGGT
* *
63520011 TAATTTGGG
1 TAATTCGGT
* *
63520020 TAATTTGGG
1 TAATTCGGT
63520029 TAATTCGGT
1 TAATTCGGT
**
63520038 TAATTCGAC
1 TAATTCGGT
* **
63520047 TAGTTCGAC
1 TAATTCGGT
63520056 TAATTCGGT
1 TAATTCGGT
*
63520065 TAATTCGAT
1 TAATTCGGT
*
63520074 TAATTCAGT
1 TAATTCGGT
*
63520083 TAATTCGAT
1 TAATTCGGT
63520092 TAATT
1 TAATT
63520097 TTATACTTAT
Statistics
Matches: 79, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 79 1.00
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:63521163 original size:179 final size:179
Alignment explanation
Indices: 63520863--63521196 Score: 623
Period size: 179 Copynumber: 1.9 Consensus size: 179
63520853 GAACTAGAAA
63520863 TCAATAGAAATCAACAAAATTGTTATTTCAGAAAATAGATTTAATATTCAGAGAATAAAACTCTC
1 TCAATAGAAATCAACAAAATTGTTATTTCAGAAAATAGATTTAATATTCAGAGAATAAAACTCTC
*
63520928 ACTATTTTTTAGTAGAATAACAATATCTTAATGTTGTGTATTTTACCCTACTAGTGACATCTATT
66 ACTATTTTTTAGTAGAATAACAATATCTTAAAGTTGTGTATTTTACCCTACTAGTGACATCTATT
63520993 TATAGGGAGAAGAAGTAAAGTCTTTTAGAGTGAAAACAAAAATCTCTTC
131 TATAGGGAGAAGAAGTAAAGTCTTTTAGAGTGAAAACAAAAATCTCTTC
* *
63521042 TCAATAGAAATCGACAAAATTGTTTTTTCAGAAAATAGATTTAATATTCAGAGAATAAAACTCTC
1 TCAATAGAAATCAACAAAATTGTTATTTCAGAAAATAGATTTAATATTCAGAGAATAAAACTCTC
* *
63521107 ACTATTTTTTAGTAGAATAACAATATCTTAAAGTTTTGTATTTTACCCTCCTAGTGACATCTATT
66 ACTATTTTTTAGTAGAATAACAATATCTTAAAGTTGTGTATTTTACCCTACTAGTGACATCTATT
63521172 TATAGGGAGAAGAAGTAAAGTCTTT
131 TATAGGGAGAAGAAGTAAAGTCTTT
63521197 GTTGAATTGT
Statistics
Matches: 150, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
179 150 1.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (179 bp):
TCAATAGAAATCAACAAAATTGTTATTTCAGAAAATAGATTTAATATTCAGAGAATAAAACTCTC
ACTATTTTTTAGTAGAATAACAATATCTTAAAGTTGTGTATTTTACCCTACTAGTGACATCTATT
TATAGGGAGAAGAAGTAAAGTCTTTTAGAGTGAAAACAAAAATCTCTTC
Found at i:63522858 original size:51 final size:51
Alignment explanation
Indices: 63522803--63523022 Score: 210
Period size: 51 Copynumber: 4.3 Consensus size: 51
63522793 GACTTTCACA
* * **
63522803 TAGTACCACACTTGTGATCAAAACCATCTCTTACACATAGTAGCCTGCACT
1 TAGTACTACACATGTGATCAAAACCATCTGGTACACATAGTAGCCTGCACT
* * * *
63522854 TAGTACCACACATGTGATCAAAGCTATCGGGTACGA-ATAGTAGCCTGCACT
1 TAGTACTACACATGTGATCAAAACCATCTGGTAC-ACATAGTAGCCTGCACT
* ** *
63522905 TAGTACTACACATGCGA-CCTAACCATCTGGTACACGTAGTAGCCTGCACT
1 TAGTACTACACATGTGATCAAAACCATCTGGTACACATAGTAGCCTGCACT
* * * * * *** * *
63522955 TCGTATTACACACGTGACCTAAAACCATTTTAAACACATAGTAGCCTGAACA
1 TAGTACTACACATGTGATC-AAAACCATCTGGTACACATAGTAGCCTGCACT
63523007 TAGTACTACACATGTG
1 TAGTACTACACATGTG
63523023 TTCTCACAAT
Statistics
Matches: 135, Mismatches: 30, Indels: 7
0.78 0.17 0.04
Matches are distributed among these distances:
49 1 0.01
50 38 0.28
51 59 0.44
52 37 0.27
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (51 bp):
TAGTACTACACATGTGATCAAAACCATCTGGTACACATAGTAGCCTGCACT
Found at i:63522965 original size:50 final size:50
Alignment explanation
Indices: 63522824--63523022 Score: 193
Period size: 50 Copynumber: 3.9 Consensus size: 50
63522814 TTGTGATCAA
** * * *
63522824 AACCATCTCTTACACATAGTAGCCTGCACTTAGTACCACACATGTGATCA
1 AACCATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT
* * *
63522874 AAGCTATCGGGTACGA-ATAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 AA-CCATCTGGTAC-ACATAGTAGCCTGCACTTAGTACTACACATGTGACCT
* * * *
63522925 AACCATCTGGTACACGTAGTAGCCTGCACTTCGTATTACACACGTGACCT
1 AACCATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT
* *** * *
63522975 AAAACCATTTTAAACACATAGTAGCCTGAACATAGTACTACACATGTG
1 --AACCATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTG
63523023 TTCTCACAAT
Statistics
Matches: 119, Mismatches: 25, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
49 1 0.01
50 41 0.34
51 40 0.34
52 37 0.31
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (50 bp):
AACCATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT
Found at i:63528579 original size:24 final size:24
Alignment explanation
Indices: 63528552--63528604 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
63528542 TACATTTGAT
*
63528552 TATGAGAATACATCTGATTCCGTA
1 TATGAGAATACATCTGAATCCGTA
** *
63528576 TATGAGAATATGTCTGAATCTGTA
1 TATGAGAATACATCTGAATCCGTA
63528600 TATGA
1 TATGA
63528605 AAACGTATCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (24 bp):
TATGAGAATACATCTGAATCCGTA
Done.