Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 19 of 344
Found at i:6739146 original size:20 final size:21
Alignment explanation
Indices: 6739121--6739161 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
6739111 GCTTTCAAGC
6739121 AATCTCTGATGA-TTTTACTT
1 AATCTCTGATGATTTTTACTT
6739141 AATCTCTGATGATTTTTACTT
1 AATCTCTGATGATTTTTACTT
6739162 TCTCTTCTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.24, C:0.15, G:0.10, T:0.51
Consensus pattern (21 bp):
AATCTCTGATGATTTTTACTT
Found at i:6743317 original size:45 final size:47
Alignment explanation
Indices: 6743215--6743327 Score: 140
Period size: 45 Copynumber: 2.4 Consensus size: 47
6743205 TGTCTTCGAC
** * *
6743215 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* * *
6743263 ATGGGCTTACATGGCTCATT-CTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
6743308 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
6743328 TCTTCCTGCC
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
45 28 0.49
47 13 0.23
48 16 0.28
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.35
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:6746971 original size:24 final size:23
Alignment explanation
Indices: 6746935--6746980 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
6746925 CATGTTCCCC
6746935 TGCTTTAATTCAAGAAACTCTTTG
1 TGCTTTAATTCAAGAAA-TCTTTG
*
6746959 TGCTTCTAA-TCAATAAATCTTT
1 TGCTT-TAATTCAAGAAATCTTT
6746981 CACTGATGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 5 0.25
24 12 0.60
25 3 0.15
ACGTcount: A:0.30, C:0.17, G:0.09, T:0.43
Consensus pattern (23 bp):
TGCTTTAATTCAAGAAATCTTTG
Found at i:6773284 original size:40 final size:40
Alignment explanation
Indices: 6773229--6773414 Score: 297
Period size: 40 Copynumber: 4.7 Consensus size: 40
6773219 ATTTGAATGA
6773229 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
6773269 TATCCGGGCTAAGT-CCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
6773308 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
* * *
6773348 TATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTGA-TA
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AG-TGATTT
*
6773388 TATCCGGGCTAAGACCCGAAGGCATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTT
6773415 GTGCGAGTTG
Statistics
Matches: 140, Mismatches: 3, Indels: 6
0.94 0.02 0.04
Matches are distributed among these distances:
39 40 0.29
40 97 0.69
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
Found at i:6773415 original size:40 final size:40
Alignment explanation
Indices: 6773228--6773478 Score: 287
Period size: 40 Copynumber: 6.3 Consensus size: 40
6773218 CATTTGAATG
*
6773228 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATT
* *
6773268 TTATCCGGGCTAAG-TCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATT
* *
6773307 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATT
* *
6773347 TTATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCT-AG-TGATT
* * *
6773387 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATT
* * * * * * *
6773427 ATACCCGGGTTAAGACCCGAAGGCAATTGTGTTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATT
6773467 ATATCC-GGCTAA
1 ATATCCGGGCTAA
6773479 ATTCCGAAGA
Statistics
Matches: 189, Mismatches: 16, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
39 46 0.24
40 140 0.74
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATT
Found at i:6777201 original size:40 final size:40
Alignment explanation
Indices: 6777171--6777380 Score: 305
Period size: 40 Copynumber: 5.3 Consensus size: 40
6777161 GGACTAAGAT
* * * *
6777171 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
*
6777211 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
6777251 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
6777291 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
6777331 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
6777370 CCGAAGGCATT
1 CCGAAGGCATT
6777381 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 34 0.22
40 123 0.78
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:6777332 original size:120 final size:119
Alignment explanation
Indices: 6777119--6777380 Score: 312
Period size: 120 Copynumber: 2.2 Consensus size: 119
6777109 TTGAATGCTG
* * * * *
6777119 TCCGGGCTAAGTCCCGAAGGC-TTTGTGTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTGAATAAATCCGGACTAAGATCCGAAGGCATTC
**
6777183 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * * **
6777238 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCATT
* ** * *
6777302 CGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
6777357 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
6777381 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
119 54 0.45
120 66 0.55
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTGAATAAATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:6784497 original size:40 final size:40
Alignment explanation
Indices: 6784467--6784676 Score: 305
Period size: 40 Copynumber: 5.3 Consensus size: 40
6784457 GGACTAAGAT
* * * *
6784467 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
*
6784507 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
6784547 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
6784587 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
6784627 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
6784666 CCGAAGGCATT
1 CCGAAGGCATT
6784677 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 34 0.22
40 123 0.78
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:6791392 original size:40 final size:40
Alignment explanation
Indices: 6791244--6791434 Score: 233
Period size: 40 Copynumber: 4.8 Consensus size: 40
6791234 CATTTGAATG
* *
6791244 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGATT
* * * *
6791284 TTATCCGGGCTAAGTCCTGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGATT
* *
6791324 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGATT
*
6791364 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGATT
* * * *
6791404 ATACCCGGGTTAAGACCCGAAGGCAATTGTG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG
6791435 TTTGTGGTTA
Statistics
Matches: 137, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
40 134 0.98
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGATT
Found at i:6791447 original size:80 final size:80
Alignment explanation
Indices: 6791248--6791464 Score: 240
Period size: 80 Copynumber: 2.7 Consensus size: 80
6791238 TGAATGATAT
* * * * *
6791248 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGTCCTGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGTCCCGAAGGCATTTA
* * * *
6791313 TGCTAGTGATTTTAT
66 TGCGAGTGACTATAC
* * * *
6791328 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGTCCCGAAGGCATTTA
6791393 TGCGAGTTG-CTATAC
66 TGCGAG-TGACTATAC
* * * * * *
6791408 CCGGGTTAAGACCCGAAGGCAATTGTGTTTGTGGTTATATCC-GGCTAAATTCCGAAG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGTCCCGAAG
6791465 AAACTTGGGT
Statistics
Matches: 114, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 13 0.11
80 99 0.87
81 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGTCCCGAAGGCATTTA
TGCGAGTGACTATAC
Found at i:6799332 original size:79 final size:81
Alignment explanation
Indices: 6799196--6799378 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
6799186 TCGAATGATG
* *
6799196 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGGTCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGGTCCGAAGGCATT
*
6799260 TGTGCGAGTTACTA-A
66 TGTGCAAGTTACTATA
* * * **
6799275 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAA-GTCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGGT-CCGAAGGCA
6799337 TTTGTGCAAGTTACTATA
64 TTTGTGCAAGTTACTATA
* *
6799355 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
6799379 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 57 0.64
80 30 0.34
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGGTCCGAAGGCATT
TGTGCAAGTTACTATA
Found at i:6799394 original size:40 final size:40
Alignment explanation
Indices: 6799197--6799380 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
6799187 CGAATGATGT
* * * *
6799197 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
6799237 CCGGACTAAGGT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAA-GTCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
6799277 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
6799315 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
6799356 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
6799381 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 36 0.29
40 78 0.62
41 11 0.09
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:6799402 original size:79 final size:79
Alignment explanation
Indices: 6799249--6799413 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
6799239 GGACTAAGGT
* * **
6799249 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
6799314 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
6799328 CCGAAGGCATTTGTGCAAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCAAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
6799391 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
6799407 CCGAAGG
1 CCGAAGG
6799414 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:6805903 original size:37 final size:37
Alignment explanation
Indices: 6805843--6805920 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
6805833 TATTACGAAG
* * *
6805843 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGA
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
* *
6805880 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
6805917 TCTT
1 TCTT
6805921 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
Found at i:6806108 original size:47 final size:47
Alignment explanation
Indices: 6806039--6806312 Score: 476
Period size: 47 Copynumber: 5.8 Consensus size: 47
6806029 CCCTTTGGGA
* * * * *
6806039 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6806086 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6806133 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6806180 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
*
6806229 TTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6806276 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
6806313 AATCCTAAAT
Statistics
Matches: 218, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 172 0.79
49 46 0.21
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:6806237 original size:96 final size:94
Alignment explanation
Indices: 6806039--6806312 Score: 476
Period size: 96 Copynumber: 2.9 Consensus size: 94
6806029 CCCTTTGGGA
* * * * *
6806039 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
6806104 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
6806133 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--AC
6806198 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
6806229 TTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
6806294 TTTCACATTCATCACATCG
66 TTTCACATTCATCACATCG
6806313 AATCCTAAAT
Statistics
Matches: 172, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
94 79 0.46
96 93 0.54
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:6806295 original size:143 final size:141
Alignment explanation
Indices: 6806039--6806312 Score: 476
Period size: 143 Copynumber: 1.9 Consensus size: 141
6806029 CCCTTTGGGA
* * * *
6806039 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATTTACACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
6806104 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
6806169 GGCCATTAGGC
131 GGCCATTAGGC
* *
6806180 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCTTTATCACATATATAC
1 CTTATCACAT-T-TACACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATAC
6806245 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
6806310 TCG
129 TCG
6806313 AATCCTAAAT
Statistics
Matches: 125, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
141 10 0.08
142 1 0.01
143 114 0.91
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATTTACACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:6812574 original size:28 final size:27
Alignment explanation
Indices: 6812517--6812613 Score: 140
Period size: 27 Copynumber: 3.6 Consensus size: 27
6812507 TAAATTGTGC
*
6812517 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGAATATGT
*
6812544 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGAATATGT
* *
6812572 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGAATATGT
*
6812599 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
6812614 GACTTAATAA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 38 0.59
28 26 0.41
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGAATATGT
Found at i:6812678 original size:28 final size:27
Alignment explanation
Indices: 6812637--6812712 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 27
6812627 TTCTTGAATC
*
6812637 ATTATGGA-CACTAAGTGTGCGAGTATG
1 ATTATGTAGCACTAAGTGTGCGAGT-TG
6812664 ATTATGTAGCACTAAGTGTGCGAGTTG
1 ATTATGTAGCACTAAGTGTGCGAGTTG
* *
6812691 ATTATATAGCACTGAGTGTGCG
1 ATTATGTAGCACTAAGTGTGCG
6812713 GACTTAATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
27 29 0.64
28 16 0.36
ACGTcount: A:0.28, C:0.12, G:0.29, T:0.32
Consensus pattern (27 bp):
ATTATGTAGCACTAAGTGTGCGAGTTG
Found at i:6812680 original size:99 final size:99
Alignment explanation
Indices: 6812546--6812757 Score: 406
Period size: 99 Copynumber: 2.1 Consensus size: 99
6812536 GAATATGTAG
*
6812546 CACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGT
1 CACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGT
6812611 GCGGACTTAATAAATATTCTTGAATCATTATGGA
66 GCGGACTTAATAAATATTCTTGAATCATTATGGA
*
6812645 CACTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGT
1 CACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGT
6812710 GCGGACTTAATAAATATTCTTGAATCATTATGGA
66 GCGGACTTAATAAATATTCTTGAATCATTATGGA
6812744 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
6812758 CACTATTGAG
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
99 111 1.00
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.33
Consensus pattern (99 bp):
CACTAAGTGTGCGAGTATGACTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGT
GCGGACTTAATAAATATTCTTGAATCATTATGGA
Found at i:6814380 original size:40 final size:40
Alignment explanation
Indices: 6814271--6814416 Score: 190
Period size: 40 Copynumber: 3.7 Consensus size: 40
6814261 AAGTGACCAT
*
6814271 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* * * *
6814311 TTCTGGGCT-AGGCCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
6814350 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
6814391 A-CCGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGCTAAGTCCCGAAGGCATTTG
6814417 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
39 33 0.36
40 56 0.62
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:6814438 original size:79 final size:79
Alignment explanation
Indices: 6814285--6814449 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
6814275 GGACTAAGAT
* * **
6814285 CCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAGGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAGGCCCGAAGGCATTGGAACGAGTTACTAA
*
6814350 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
6814364 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTA-GGCCCGAAGGCATTGGAACGAGTTA-C
* *
6814427 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
6814443 CCGAAGG
1 CCGAAGG
6814450 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAGGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:6820941 original size:37 final size:37
Alignment explanation
Indices: 6820881--6820958 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
6820871 TATTACGAAG
* * *
6820881 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGA
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
* *
6820918 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
6820955 TCTT
1 TCTT
6820959 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
Found at i:6821146 original size:47 final size:47
Alignment explanation
Indices: 6821077--6821397 Score: 579
Period size: 47 Copynumber: 6.8 Consensus size: 47
6821067 CCCTTTGGGA
* * * * *
6821077 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6821124 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6821171 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6821218 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6821265 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6821314 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6821361 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
6821398 AATCCTAAAT
Statistics
Matches: 267, Mismatches: 5, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
47 220 0.82
49 47 0.18
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:6821333 original size:143 final size:141
Alignment explanation
Indices: 6821077--6821397 Score: 579
Period size: 143 Copynumber: 2.3 Consensus size: 141
6821067 CCCTTTGGGA
* * * * *
6821077 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
6821142 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
6821207 GGCCATTAGGC
131 GGCCATTAGGC
6821218 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
6821283 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
6821348 TCGGCCATTAGGC
129 TCGGCCATTAGGC
6821361 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
6821398 AATCCTAAAT
Statistics
Matches: 173, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
141 50 0.29
143 123 0.71
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:6828087 original size:48 final size:48
Alignment explanation
Indices: 6828016--6828394 Score: 361
Period size: 48 Copynumber: 7.9 Consensus size: 48
6828006 GTAAACTGCT
* * *
6828016 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCC
* * * * * * *
6828064 GATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTCTTAATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCC
* * **
6828112 GATGCCATGTCCTAGACATGGTCTTACACAAGCTCACATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCAAGGCC
* **
6828160 AATGCCATGTCCCAGACATGGTCTTACACTAGCAT-ACATATCAACACC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC-TCACATATCAAGGCC
* * * *
6828208 GATGCCATATCCCAGACATGGTCTTACGCTGGCTCACATATCAAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCC
* * * * * **
6828256 GATGCCATGTCCTAGACATGGTCGTACACTAGCTCTCATCTCAATGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCC
* * * * ** *
6828304 GATGCCATGTCCTAGATATGGTCTTACACTGGCTCTCATAAT-GTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCAAGGCC
** *
6828352 GATGCCATGTCCCAGACAT-GTCTTACTTTAGCACACATATCAA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAA
6828395 CCAAATGTCA
Statistics
Matches: 266, Mismatches: 59, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
46 2 0.01
47 17 0.06
48 244 0.92
49 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCC
Found at i:6828180 original size:96 final size:96
Alignment explanation
Indices: 6828016--6828377 Score: 435
Period size: 96 Copynumber: 3.8 Consensus size: 96
6828006 GTAAACTGCT
*
6828016 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCCCAGAC
* * *
6828081 ATGGTCTTATACTAGCTCTCGTCTTAATGTC
66 ATGGTCTTACACTAGCTCTCATCTCAATGTC
* ** * *
6828112 GATGCCATGTCCTAGACATGGTCTTACACAAGCTCACATAAT-GTGGCCAATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATCGAGGCCGATGCCATGTCCCAGA
* * ***
6828176 CATGGTCTTACACTAGCAT-ACATATCAACACC
65 CATGGTCTTACACTAGC-TCTCATCTCAATGTC
* * * * *
6828208 GATGCCATATCCCAGACATGGTCTTACGCTGGCTCACATATCAAGGCTGATGCCATGTCCTAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCCCAGAC
* *
6828273 ATGGTCGTACACTAGCTCTCATCTCAATGTT
66 ATGGTCTTACACTAGCTCTCATCTCAATGTC
* * * * *
6828304 GATGCCATGTCCTAGATATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATCGAGGCCGATGCCATGTCCCAGA
6828368 CAT-GTCTTAC
65 CATGGTCTTAC
6828378 TTTAGCACAC
Statistics
Matches: 221, Mismatches: 40, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
95 9 0.04
96 208 0.94
97 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTAGCTCTCATCTCAATGTC
Found at i:6828356 original size:144 final size:141
Alignment explanation
Indices: 6828015--6828394 Score: 417
Period size: 144 Copynumber: 2.7 Consensus size: 141
6828005 GGTAAACTGC
*
6828015 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGA
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCCCAGA
* * * * * * *
6828080 CATGGTCTTATACTAGCTCTCGTCTTAATGTCGATGCCATGTCCTAGACATGGTCTTACACAAGC
66 CATGGTCTTACACTAGCTCACATATCAAGGTCGATGCCATGTCCTAGACATGGTCGTACACAAGC
6828145 TCACATAATGT
131 TCACATAATGT
* * * ** *
6828156 GGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCAT-ACATATCAACACCGATGCCATATCC
1 TG---ATGCCATGTCCCAGACATGGTCTTACACTGGC-TCACATATCGAGGCCGATGCCATGTCC
* *
6828220 CAGACATGGTCTTACGCTGGCTCACATATCAAGG-CTGATGCCATGTCCTAGACATGGTCGTACA
62 CAGACATGGTCTTACACTAGCTCACATATCAAGGTC-GATGCCATGTCCTAGACATGGTCGTACA
* *
6828284 CTAGCTCTCATCTCAATGT
126 CAAGCTCACA--T-AATGT
* * * * *
6828303 TGATGCCATGTCCTAGATATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATGCCATGTCCCAG
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATCGAGGCCGATGCCATGTCCCAG
** *
6828367 ACAT-GTCTTACTTTAGCACACATATCAA
65 ACATGGTCTTACACTAGCTCACATATCAA
6828395 CCAAATGTCA
Statistics
Matches: 196, Mismatches: 33, Indels: 18
0.79 0.13 0.07
Matches are distributed among these distances:
141 1 0.01
143 22 0.11
144 163 0.83
145 3 0.02
146 1 0.01
147 6 0.03
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (141 bp):
TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCCCAGA
CATGGTCTTACACTAGCTCACATATCAAGGTCGATGCCATGTCCTAGACATGGTCGTACACAAGC
TCACATAATGT
Found at i:6832579 original size:23 final size:20
Alignment explanation
Indices: 6832549--6832611 Score: 83
Period size: 23 Copynumber: 3.0 Consensus size: 20
6832539 TGAAAGTATA
6832549 ATTTTATTTTTATTAATTTAAAT
1 ATTTTATTTTTATTAATTT---T
6832572 ATTTTATTTTTATTAATTTT
1 ATTTTATTTTTATTAATTTT
*
6832592 ATTTTA-TTTTATAAATTTT
1 ATTTTATTTTTATTAATTTT
6832611 A
1 A
6832612 AAGCCCCTAA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
19 13 0.33
20 7 0.18
23 19 0.49
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
ATTTTATTTTTATTAATTTT
Found at i:6840127 original size:79 final size:81
Alignment explanation
Indices: 6839991--6840173 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
6839981 TCGAATGATG
* *
6839991 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
6840055 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
6840070 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
6840132 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
6840150 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
6840174 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:6840189 original size:40 final size:40
Alignment explanation
Indices: 6839992--6840175 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
6839982 CGAATGATGT
* * * *
6839992 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
6840032 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
6840072 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
6840110 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
6840151 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
6840176 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:6840197 original size:79 final size:79
Alignment explanation
Indices: 6840044--6840208 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
6840034 GGACTAAGAT
* **
6840044 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
6840109 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
6840123 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
6840186 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
6840202 CCGAAGG
1 CCGAAGG
6840209 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:6844216 original size:55 final size:52
Alignment explanation
Indices: 6844151--6844404 Score: 205
Period size: 54 Copynumber: 4.8 Consensus size: 52
6844141 GTTAGGGTTT
*
6844151 AAGGATATCATGTAAGACCATGCAAAGGCATGGCAATTGGTAAGGTTTTTAAGGC
1 AAGGATATCATGTAAGACCATGC-AAGGCATGGC-ATTGGTAA-GTTTATAAGGC
* * *
6844206 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATG-CAAGGCATGGCATTGGTAAGTT--TATAAGGC
* * *
6844261 AAAGG-T-CCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATATCATGTAAGACCATG-CAAGGCATGGCATTGGTAAGTTTATAAGGC
* * * * * * *
6844313 AAAGATACCATGTAAGACCATGTTAAGACATAGCAATGGTAAGTTT-CAA---
1 AAGGATATCATGTAAGACCATG-CAAGGCATGGCATTGGTAAGTTTATAAGGC
* * * * *
6844362 AAGGATACCACGTAAGACCATGACAAGTCATGGTAATGGTAAG
1 AAGGATATCATGTAAGACCATG-CAAGGCATGGCATTGGTAAG
6844405 GTACCCGTGT
Statistics
Matches: 166, Mismatches: 27, Indels: 18
0.79 0.13 0.09
Matches are distributed among these distances:
49 36 0.22
51 3 0.02
52 10 0.06
53 35 0.21
54 40 0.24
55 37 0.22
56 5 0.03
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.23
Consensus pattern (52 bp):
AAGGATATCATGTAAGACCATGCAAGGCATGGCATTGGTAAGTTTATAAGGC
Found at i:6844356 original size:107 final size:109
Alignment explanation
Indices: 6844159--6844357 Score: 285
Period size: 107 Copynumber: 1.8 Consensus size: 109
6844149 TTAAGGATAT
** * *
6844159 CATGTAAGACCATGCAAAGGCATGGCAATTGGTAAGGTTTTTAAGGCAAGGAAATCATGTAAGAC
1 CATGTAAGACCATGCAAAGGCATGGCAATTGGTAAGGTTCATAAGGCAAAGAAACCATGTAAGAC
* *
6844224 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CATGTCAAGACATAGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
6844268 CATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-GTTCATAAGGCAAAGATACCATGTAAGAC
1 CATGTAAGACCATGCAAAGGCATGGCAATTGGTAAGGTTCATAAGGCAAAGAAACCATGTAAGAC
* *
6844331 CATGTTAAGACATAGCAATGGTAAGTT
66 CATGTCAAGACATAGCAATGATAAGTT
6844358 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
107 47 0.59
108 7 0.09
109 25 0.32
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.24
Consensus pattern (109 bp):
CATGTAAGACCATGCAAAGGCATGGCAATTGGTAAGGTTCATAAGGCAAAGAAACCATGTAAGAC
CATGTCAAGACATAGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:6850817 original size:16 final size:16
Alignment explanation
Indices: 6850796--6850833 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
6850786 TTTCAAATTA
6850796 ATTCATGCAAGTCACT
1 ATTCATGCAAGTCACT
6850812 ATTCATGCAAGTCACT
1 ATTCATGCAAGTCACT
*
6850828 ACTCAT
1 ATTCAT
6850834 TTAGAACATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.32
Consensus pattern (16 bp):
ATTCATGCAAGTCACT
Found at i:6854916 original size:42 final size:42
Alignment explanation
Indices: 6854856--6855009 Score: 195
Period size: 42 Copynumber: 3.6 Consensus size: 42
6854846 CGAGACTATG
* *
6854856 TGTAAGACCATATTTGGGATATGGCATC-ATTATGAGATTTCC
1 TGTAAGACCATATCTGGGATATGGCATCGA-TACGAGATTTCC
* *
6854898 TGTAAGACTATATCTGGGATATGGCATCGATACGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATACGAGATTTCC
* * * *
6854940 TGTAATACCATAGCTGGGCTATTGGCATCGATACGAGA-TCCC
1 TGTAAGACCATATCTGGGATA-TGGCATCGATACGAGATTTCC
6854982 ATGTAAGACCATATCTGGGATATGGCAT
1 -TGTAAGACCATATCTGGGATATGGCAT
6855010 TGGTGTGGTA
Statistics
Matches: 96, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
42 61 0.64
43 35 0.36
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATACGAGATTTCC
Found at i:6857521 original size:40 final size:40
Alignment explanation
Indices: 6857446--6857630 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
6857436 GCTACTCGTT
* *
6857446 CAAATGCCTTCGGGACATAGGCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
6857486 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
6857526 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
6857565 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
6857606 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
6857631 CATCATTCGA
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 75 0.62
41 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:6857614 original size:79 final size:80
Alignment explanation
Indices: 6857446--6857630 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
6857436 GCTACTCGTT
* * *
6857446 CAAATGCCTTCGGGACATAGGCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
6857510 GATTTAATAACTCACAC
64 GATATAATAACTCACAC
* * **
6857527 CAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
** * *
6857590 ATATGGTCACTTAGCA-
65 ATATAATAACTCA-CAC
6857606 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
6857631 CATCATTCGA
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.67
80 23 0.26
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAATAACTCACAC
Found at i:6868307 original size:16 final size:16
Alignment explanation
Indices: 6868286--6868323 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
6868276 TTTCAAATTA
6868286 ATTCATGCAAGTCACT
1 ATTCATGCAAGTCACT
6868302 ATTCATGCAAGTCACT
1 ATTCATGCAAGTCACT
*
6868318 ACTCAT
1 ATTCAT
6868324 TTAGAACATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.32
Consensus pattern (16 bp):
ATTCATGCAAGTCACT
Found at i:6872396 original size:42 final size:42
Alignment explanation
Indices: 6872336--6872488 Score: 195
Period size: 42 Copynumber: 3.6 Consensus size: 42
6872326 CGAGACTATG
* *
6872336 TGTAAGACCATATTTGGGATATGGCATC-ATTATGAGATTTCC
1 TGTAAGACCATATCTGGGATATGGCATCGA-TACGAGATTTCC
* *
6872378 TGTAAGACTATATCTGGGATATGGCATCGATACGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATACGAGATTTCC
* * *
6872420 TGTAATACCATAGCTGGGCTATTGGCATCGATACGAGA--TCC
1 TGTAAGACCATATCTGGGATA-TGGCATCGATACGAGATTTCC
6872461 ATGTAAGACCATATCTGGGATATGGCAT
1 -TGTAAGACCATATCTGGGATATGGCAT
6872489 TGGTGTGGTA
Statistics
Matches: 96, Mismatches: 12, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
41 8 0.08
42 71 0.74
43 17 0.18
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATACGAGATTTCC
Found at i:6889393 original size:54 final size:53
Alignment explanation
Indices: 6889194--6889400 Score: 213
Period size: 54 Copynumber: 3.8 Consensus size: 53
6889184 TTTCCTTTTT
* * * * * *
6889194 GAACTTACCATTGACATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTTATCAATGCCATG-CTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* * * *
6889247 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATG-GA-CCTTTGTCTTATA
1 GAACTTATCAATGCCATG-CTTGGCATGGTCTTACATGATATCC-TTGCCTTATA
* * *
6889300 GTAACTTATCAATACCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTTATCAATGCCATG-CTTGGCATGGTCTTACATGATATCCTTGCCTTATA
*
6889355 GAACTTATCAACGCCATGCATTGGCATGGTCTTACATGATATCCTT
1 GAACTTATCAATGCCATGC-TTGGCATGGTCTTACATGATATCCTT
6889401 ATGTTACCAA
Statistics
Matches: 128, Mismatches: 20, Indels: 11
0.81 0.13 0.07
Matches are distributed among these distances:
51 2 0.02
52 9 0.07
53 34 0.27
54 71 0.55
55 10 0.08
56 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
GAACTTATCAATGCCATGCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
Found at i:6891757 original size:64 final size:67
Alignment explanation
Indices: 6891667--6891791 Score: 184
Period size: 65 Copynumber: 1.9 Consensus size: 67
6891657 ATAATAATAA
* ** *
6891667 TAATAATAATAAATATTGAAAATAAAATTGC-AAATTAAAATGTAAATAAAATTAAGGGAGCAAA
1 TAATAATAATAAATATTAAAAATAAAAGAGCGAAATTAAAATATAAATAAAATTAAGGGAGCAAA
6891731 TT
66 TT
*
6891733 TAAT-ATAA-AAATATTAAAAATAAAAGAGCGAATTTAAAATATAAATAAAATTAAGGGAG
1 TAATAATAATAAATATTAAAAATAAAAGAGCGAAATTAAAATATAAATAAAATTAAGGGAG
6891792 AATAAATATA
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
64 18 0.34
65 31 0.58
66 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.11, T:0.27
Consensus pattern (67 bp):
TAATAATAATAAATATTAAAAATAAAAGAGCGAAATTAAAATATAAATAAAATTAAGGGAGCAAA
TT
Found at i:6891816 original size:3 final size:3
Alignment explanation
Indices: 6891803--6891832 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
6891793 ATAAATATAC
6891803 AAT AGAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AA
6891833 ATATTGAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:6893754 original size:23 final size:25
Alignment explanation
Indices: 6893715--6893760 Score: 78
Period size: 23 Copynumber: 1.9 Consensus size: 25
6893705 CCATTAGAAT
6893715 AAAAAATAGAAATTAAAAAAAACCA
1 AAAAAATAGAAATTAAAAAAAACCA
6893740 AAAAAATA-AAA-TAAAAAAAAC
1 AAAAAATAGAAATTAAAAAAAAC
6893761 ACACAAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 10 0.48
24 3 0.14
25 8 0.38
ACGTcount: A:0.80, C:0.07, G:0.02, T:0.11
Consensus pattern (25 bp):
AAAAAATAGAAATTAAAAAAAACCA
Found at i:6893775 original size:25 final size:23
Alignment explanation
Indices: 6893715--6893776 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 23
6893705 CCATTAGAAT
*
6893715 AAAAAATAGAAATTAAAAAAAACC
1 AAAAAA-AGAAAATAAAAAAAACC
*
6893739 AAAAAAATAAAATAAAAAAAACAC
1 AAAAAAAGAAAATAAAAAAAAC-C
*
6893763 ACAAACAAGAAAAT
1 A-AAAAAAGAAAAT
6893777 CCAAATACCA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 14 0.44
24 8 0.25
25 10 0.31
ACGTcount: A:0.77, C:0.10, G:0.03, T:0.10
Consensus pattern (23 bp):
AAAAAAAGAAAATAAAAAAAACC
Found at i:6901179 original size:53 final size:54
Alignment explanation
Indices: 6901098--6901199 Score: 170
Period size: 53 Copynumber: 1.9 Consensus size: 54
6901088 AACAAGGTCC
*
6901098 ATTGCATATATTATCATTTATTAGAATACTTTTACACGTTCAATACATTCAGCT
1 ATTGCATATATTATCATTTATTAGAATACTTTCACACGTTCAATACATTCAGCT
* *
6901152 ATTGCA-ATATTATGATTTATTAGAATACTTTCACACGTTCAATGCATT
1 ATTGCATATATTATCATTTATTAGAATACTTTCACACGTTCAATACATT
6901200 TAACTAGGGG
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
53 39 0.87
54 6 0.13
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (54 bp):
ATTGCATATATTATCATTTATTAGAATACTTTCACACGTTCAATACATTCAGCT
Found at i:6919350 original size:26 final size:26
Alignment explanation
Indices: 6919321--6919370 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
6919311 TCAAACATGC
*
6919321 ATTTAGGTCAATTTA-GTCCTAGGGAT
1 ATTTAGGT-AATTTATCTCCTAGGGAT
*
6919347 ATTTCGGTAATTTATCTCCTAGGG
1 ATTTAGGTAATTTATCTCCTAGGG
6919371 GTAAAACTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGAT
Found at i:6920894 original size:26 final size:25
Alignment explanation
Indices: 6920858--6920941 Score: 123
Period size: 26 Copynumber: 3.2 Consensus size: 25
6920848 CATGAAATTC
6920858 TTATCATGAAACATTTATCTAACCCA
1 TTATCATGAAACATTTA-CTAACCCA
6920884 TTATCATGAAACATTTACTTAACCCA
1 TTATCATGAAACATTTAC-TAACCCA
* *
6920910 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTA-CTAACCCA
6920936 TTATCA
1 TTATCA
6920942 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
25 1 0.02
26 52 0.96
27 1 0.02
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.36
Consensus pattern (25 bp):
TTATCATGAAACATTTACTAACCCA
Found at i:6925171 original size:8 final size:8
Alignment explanation
Indices: 6925160--6925199 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
6925150 TGTTTTATTA
6925160 TATTATAT
1 TATTATAT
*
6925168 TATTATCT
1 TATTATAT
*
6925176 TCTTATAT
1 TATTATAT
*
6925184 TAATATAT
1 TATTATAT
6925192 TATTATAT
1 TATTATAT
6925200 CATATACTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (8 bp):
TATTATAT
Found at i:6925210 original size:24 final size:25
Alignment explanation
Indices: 6925163--6925215 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
6925153 TTTATTATAT
* *
6925163 TATATTATTATCTTCTTATATTAA-
1 TATATTATTATCATCATATATTAAG
6925187 TATATTATTAT-ATCATATACTTAAG
1 TATATTATTATCATCATATA-TTAAG
6925212 TATA
1 TATA
6925216 AAGTATAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 15 0.60
25 4 0.16
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.53
Consensus pattern (25 bp):
TATATTATTATCATCATATATTAAG
Found at i:6926755 original size:31 final size:31
Alignment explanation
Indices: 6926717--6926778 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
6926707 CATTAACTAC
6926717 GGTCAAATAAAATGTCGATTATTGCTAATTG
1 GGTCAAATAAAATGTCGATTATTGCTAATTG
6926748 GGTCAAATAAAATGTCGATTATTGCTAATTG
1 GGTCAAATAAAATGTCGATTATTGCTAATTG
6926779 ATTCATCATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (31 bp):
GGTCAAATAAAATGTCGATTATTGCTAATTG
Found at i:6929786 original size:27 final size:27
Alignment explanation
Indices: 6929748--6929804 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
6929738 CAAGAAGATG
6929748 TGATAAGGGGTTGATCATTATTGAATC
1 TGATAAGGGGTTGATCATTATTGAATC
6929775 TGATAAGGGGTTGATCATTATTGAATC
1 TGATAAGGGGTTGATCATTATTGAATC
6929802 TGA
1 TGA
6929805 CTCTAGCTGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (27 bp):
TGATAAGGGGTTGATCATTATTGAATC
Found at i:6932354 original size:17 final size:17
Alignment explanation
Indices: 6932309--6932354 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
6932299 AGAGAAATTC
6932309 ATTTATTTTTATATAAAAT
1 ATTT-TTTTT-TATAAAAT
* *
6932328 AATTTGTTTTATAAAAT
1 ATTTTTTTTTATAAAAT
6932345 ATTTTTTTTT
1 ATTTTTTTTT
6932355 GAAAAAAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 16 0.70
18 4 0.17
19 3 0.13
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
ATTTTTTTTTATAAAAT
Found at i:6933104 original size:2 final size:2
Alignment explanation
Indices: 6933097--6933140 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
6933087 GTGAGTGAGT
*
6933097 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA -A GA GG GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
6933138 GA G
1 GA G
6933141 GGAGGGAGGG
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:6933145 original size:10 final size:10
Alignment explanation
Indices: 6933099--6933171 Score: 51
Period size: 10 Copynumber: 7.3 Consensus size: 10
6933089 GAGTGAGTGA
* *
6933099 GAGAGAGAGA
1 GAGAGGGAGG
* *
6933109 GAGAGAGAGA
1 GAGAGGGAGG
*
6933119 GAGAGAGAGAG
1 GAGAGGGAG-G
*
6933130 AAGAGGGAGAG
1 GAGAGGGAG-G
6933141 G-GAGGGAGG
1 GAGAGGGAGG
*
6933150 GGGAGGG-GG
1 GAGAGGGAGG
6933159 GAGAGGGAGG
1 GAGAGGGAGG
6933169 GAG
1 GAG
6933172 GAACAAAATA
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
9 10 0.18
10 36 0.65
11 9 0.16
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (10 bp):
GAGAGGGAGG
Found at i:6933166 original size:13 final size:14
Alignment explanation
Indices: 6933138--6933172 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
6933128 AGAAGAGGGA
*
6933138 GAGGGAGGGAGGGG
1 GAGGGAGGGAGAGG
6933152 GAGGG-GGGAGAGG
1 GAGGGAGGGAGAGG
6933165 GAGGGAGG
1 GAGGGAGG
6933173 AACAAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.23, C:0.00, G:0.77, T:0.00
Consensus pattern (14 bp):
GAGGGAGGGAGAGG
Found at i:6937340 original size:30 final size:30
Alignment explanation
Indices: 6937257--6937342 Score: 120
Period size: 30 Copynumber: 2.9 Consensus size: 30
6937247 TAGGTACTTC
* *
6937257 CACACGGGTGATCCACACGCCCGCGTGTGC
1 CACACGGGTGATCCACACGCCCGTGTGTGA
* *
6937287 CACATGGGTGATCCACATGCCCGTGTGTGA
1 CACACGGGTGATCCACACGCCCGTGTGTGA
6937317 CACACGGGTAGAT-CACACGCCCGTGT
1 CACACGGGT-GATCCACACGCCCGTGT
6937343 ATCATGGCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
30 46 0.94
31 3 0.06
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.17
Consensus pattern (30 bp):
CACACGGGTGATCCACACGCCCGTGTGTGA
Found at i:6939693 original size:20 final size:19
Alignment explanation
Indices: 6939662--6939703 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
6939652 ATACTATAAG
6939662 ATTATTTTTATCATACATT
1 ATTATTTTTATCATACATT
* *
6939681 ATTATTATTTATCGTATATT
1 ATTATT-TTTATCATACATT
6939701 ATT
1 ATT
6939704 TTTCACAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (19 bp):
ATTATTTTTATCATACATT
Found at i:6939908 original size:23 final size:23
Alignment explanation
Indices: 6939860--6939923 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 23
6939850 ATATATTCAA
6939860 ATTATGTTTTATTCTATA-ACGTTT
1 ATTAT-TTTTATTCTATATACG-TT
6939884 ATTATTTTTATTCTATATTAC-TT
1 ATTATTTTTATTCTATA-TACGTT
*
6939907 ATTATTTTT-TTATATAT
1 ATTATTTTTATTCTATAT
6939924 GTTATGTATA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
21 1 0.03
22 6 0.16
23 23 0.62
24 5 0.14
25 2 0.05
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.64
Consensus pattern (23 bp):
ATTATTTTTATTCTATATACGTT
Found at i:6941724 original size:53 final size:54
Alignment explanation
Indices: 6941656--6941863 Score: 233
Period size: 53 Copynumber: 3.9 Consensus size: 54
6941646 TTTCCTTTTT
* * *
6941656 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * * ** *
6941709 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGTCTTATA
1 GAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCC-TTGCCTTATA
** * *
6941763 GTAACTTATTAATACCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* *
6941818 GAACTTATCAATGCCATG-CATTGGCATGGTCTTACATGATATCCTT
1 GAACTTACCAATGCCATGTC-TTGACATGGTCTTACATGATATCCTT
6941864 ATGTTACCAA
Statistics
Matches: 129, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
52 2 0.02
53 44 0.34
54 40 0.31
55 41 0.32
56 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (54 bp):
GAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:6943394 original size:28 final size:27
Alignment explanation
Indices: 6943351--6943409 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 27
6943341 TTAAAAAAAA
*
6943351 CTTATTTCTCTTTTGAGTGTCAATATT
1 CTTATTTCTCTCTTGAGTGTCAATATT
6943378 CTTAGTTTCTCTCTTGAGTGTCAATATT
1 CTTA-TTTCTCTCTTGAGTGTCAATATT
6943406 CTTA
1 CTTA
6943410 CCTTTCGATT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 4 0.13
28 26 0.87
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.53
Consensus pattern (27 bp):
CTTATTTCTCTCTTGAGTGTCAATATT
Found at i:6949056 original size:21 final size:21
Alignment explanation
Indices: 6949031--6949072 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
6949021 ACAGAAGAGA
6949031 AAGTAAAAATCATCAGAGATT
1 AAGTAAAAATCATCAGAGATT
6949052 AAGTAAAAATCATCAGAGATT
1 AAGTAAAAATCATCAGAGATT
6949073 GCTTGAAAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.10, G:0.14, T:0.24
Consensus pattern (21 bp):
AAGTAAAAATCATCAGAGATT
Found at i:6966463 original size:31 final size:29
Alignment explanation
Indices: 6966394--6966467 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
6966384 ACAAAATAAT
**
6966394 AACATAAGTGACTAAAACGTAACATTTCA
1 AACATAAGTGACTAAAACGTAACATGGCA
*
6966423 AACATAAGTGACTAAAATGTAACATGAGGCA
1 AACATAAGTGACTAAAACGTAACAT--GGCA
*
6966454 AACAAAAGTGACTA
1 AACATAAGTGACTA
6966468 TTTTTGTAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 24 0.62
31 15 0.38
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (29 bp):
AACATAAGTGACTAAAACGTAACATGGCA
Found at i:6972857 original size:7 final size:7
Alignment explanation
Indices: 6972845--6972874 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
6972835 CTAATAACTT
6972845 AAAATTA
1 AAAATTA
6972852 AAAATTA
1 AAAATTA
6972859 AAAATT-
1 AAAATTA
6972865 AAAATTA
1 AAAATTA
6972872 AAA
1 AAA
6972875 TACAAATATC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AAAATTA
Found at i:6972861 original size:13 final size:14
Alignment explanation
Indices: 6972845--6972874 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
6972835 CTAATAACTT
6972845 AAAATTAAAAATTA
1 AAAATTAAAAATTA
6972859 AAAATT-AAAATTA
1 AAAATTAAAAATTA
6972872 AAA
1 AAA
6972875 TACAAATATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
AAAATTAAAAATTA
Found at i:6973303 original size:31 final size:29
Alignment explanation
Indices: 6973241--6973303 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 29
6973231 GGTCGGACTA
* *
6973241 TAATTTTTAAATTGAAAAAGTATATGAAC
1 TAATTTTCAAATTGAAAAAGTATAGGAAC
* *
6973270 TAATTTTCAAATTCTAAATAAGTATAGGGAC
1 TAATTTTCAAATT-GAAA-AAGTATAGGAAC
6973301 TAA
1 TAA
6973304 CAACATAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 12 0.43
30 3 0.11
31 13 0.46
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (29 bp):
TAATTTTCAAATTGAAAAAGTATAGGAAC
Found at i:6978121 original size:12 final size:13
Alignment explanation
Indices: 6978092--6978124 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
6978082 CTAACTTCAA
*
6978092 TCACAAACTTGTG
1 TCACAAACTTGAG
6978105 TCACAAAC-TGAG
1 TCACAAACTTGAG
6978117 TCACAAAC
1 TCACAAAC
6978125 AGGCAATTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.39, C:0.27, G:0.12, T:0.21
Consensus pattern (13 bp):
TCACAAACTTGAG
Found at i:6991413 original size:16 final size:16
Alignment explanation
Indices: 6991392--6991423 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
6991382 TGGTTGCAAA
*
6991392 TTTTATAAATTATAAT
1 TTTTATAAAATATAAT
6991408 TTTTATAAAATATAAT
1 TTTTATAAAATATAAT
6991424 AAATTTGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTTATAAAATATAAT
Found at i:6996001 original size:13 final size:13
Alignment explanation
Indices: 6995978--6996028 Score: 59
Period size: 13 Copynumber: 4.0 Consensus size: 13
6995968 TTATAATACC
6995978 AAAAAAA-AAAAA
1 AAAAAAACAAAAA
*
6995990 ACAAAAACAAAAA
1 AAAAAAACAAAAA
*
6996003 AAAAAAACAAAGA
1 AAAAAAACAAAAA
* *
6996016 AGAAAAAGAAAAA
1 AAAAAAACAAAAA
6996029 GGAGGCCATT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
12 6 0.19
13 26 0.81
ACGTcount: A:0.88, C:0.06, G:0.06, T:0.00
Consensus pattern (13 bp):
AAAAAAACAAAAA
Found at i:6996003 original size:19 final size:20
Alignment explanation
Indices: 6995979--6996028 Score: 75
Period size: 19 Copynumber: 2.5 Consensus size: 20
6995969 TATAATACCA
6995979 AAAAAAAAAAAACAAA-AAC
1 AAAAAAAAAAAACAAAGAAC
*
6995998 AAAAAAAAAAAACAAAGAAG
1 AAAAAAAAAAAACAAAGAAC
6996018 AAAAAGAAAAA
1 AAAAA-AAAAA
6996029 GGAGGCCATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 16 0.57
20 7 0.25
21 5 0.18
ACGTcount: A:0.88, C:0.06, G:0.06, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAAAACAAAGAAC
Found at i:7000117 original size:125 final size:123
Alignment explanation
Indices: 6999867--7000117 Score: 290
Period size: 121 Copynumber: 2.0 Consensus size: 123
6999857 GCTTGCCCTC
* * **
6999867 TATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAAGGATATTCGAATATTTAGATCAAATGA
1 TATTTCATTTAAAACTCATGTATTTAAATTTT-AAAAAGGATAATCGAATACTTAGATCAAACAA
* * * *
6999932 AAAATCGAAACCCAGTACGGGCACGACTACTCAAATTTCTAAATACGGAATATTACCTT
65 AAAACCGAAACCCAGTACAGACACGACTACTCAAATTTCTAAATACCGAATATTACCTT
* * **
6999991 TATTTTATTTAAAACTCATGTATTTTAA-TTT-AAAAGGATAATCGGTTACTTAGATCAAACAAA
1 TATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCGAATACTTAGATCAAACAAA
* * * * *
7000054 AAACCGAAACTCAGTACATTAAGACACGATTTCTCGAATTTCTAAATACCGAATATTGCCTT
66 AAACCGAAACCCAGTAC----AGACACGACTACTCAAATTTCTAAATACCGAATATTACCTT
7000116 TA
1 TA
7000118 CTTGAAAAAT
Statistics
Matches: 106, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
121 41 0.39
123 3 0.03
124 26 0.25
125 36 0.34
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.33
Consensus pattern (123 bp):
TATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCGAATACTTAGATCAAACAAA
AAACCGAAACCCAGTACAGACACGACTACTCAAATTTCTAAATACCGAATATTACCTT
Found at i:7000292 original size:3 final size:3
Alignment explanation
Indices: 7000278--7000641 Score: 65
Period size: 3 Copynumber: 121.3 Consensus size: 3
7000268 AATAGGACGG
* * * * * *
7000278 ATA ATA AAA ATA ATA GTA ATA ATA AT- ATA ATG GTA ATA ATA TTA AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * *
7000325 AAA AGTTA GT- ATA ATG ATG ATA ATA GTG TTA AAA ATA ATA ATA ATA
1 ATA A--TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
7000371 A-A A-A ACA A-A CTA CATA TTA ATG ATA ATA GAAA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* * * *
7000415 ATA ATA ATA ATA AT- ATA CGTG CTA ATA ATA ATA ACA AT- ATA A-A
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * *
7000458 A-A AAA AGA A-A ATA ATA CT- ATA TTG ATA AAA ATA ATA ATT GTA GATTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -A-TA
* * * * * *
7000505 ATA ATA ATA GTA ATA AAA AGGTA A-A AGTA ATA AAA ATA CTA TTA CGTTA
1 ATA ATA ATA ATA ATA ATA A--TA ATA A-TA ATA ATA ATA ATA ATA --ATA
* * * * * * *
7000554 CTA CTA ATA ATA ATA ATA A-A GAAA ACA GTA ATA GT- ATA TAGA ATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA -ATA ATA
* * *
7000599 ATA GTA A-A AGTA ATA ATA ATA ATA ATA ATA ATA TTA AAA ATA A
1 ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7000642 CACTCTCCCC
Statistics
Matches: 258, Mismatches: 75, Indels: 56
0.66 0.19 0.14
Matches are distributed among these distances:
2 25 0.10
3 212 0.82
4 13 0.05
5 8 0.03
ACGTcount: A:0.60, C:0.03, G:0.08, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:7000948 original size:24 final size:25
Alignment explanation
Indices: 7000915--7000968 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
7000905 ATCTCTTGTA
*
7000915 TTTTTTGTATT-GAAAGTCTCTC-T
1 TTTTTTGTATTCGAAACTCTCTCAT
*
7000938 TTTTCTTGTATTCGAATCTCTCTCAT
1 TTTT-TTGTATTCGAAACTCTCTCAT
7000964 TTTTT
1 TTTTT
7000969 CTCAAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 4 0.15
24 7 0.27
25 10 0.38
26 5 0.19
ACGTcount: A:0.15, C:0.17, G:0.09, T:0.59
Consensus pattern (25 bp):
TTTTTTGTATTCGAAACTCTCTCAT
Found at i:7002816 original size:12 final size:12
Alignment explanation
Indices: 7002799--7002823 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7002789 GATGATAGGC
7002799 TGATCAACAAGG
1 TGATCAACAAGG
7002811 TGATCAACAAGG
1 TGATCAACAAGG
7002823 T
1 T
7002824 TTTTGTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (12 bp):
TGATCAACAAGG
Found at i:7004633 original size:21 final size:19
Alignment explanation
Indices: 7004609--7004661 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 19
7004599 TTATAACACT
7004609 TTTAAATTAAAATAAAATTAA
1 TTTAAATTAAAA-AAAA-TAA
*
7004630 TTTAAATTATAAAAAAATAC
1 TTTAAATTA-AAAAAAATAA
7004650 TTT-AATTAAAAA
1 TTTAAATTAAAAA
7004662 TTTTCAATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 4 0.13
19 5 0.17
20 5 0.17
21 13 0.43
22 3 0.10
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
TTTAAATTAAAAAAAATAA
Found at i:7005858 original size:15 final size:16
Alignment explanation
Indices: 7005827--7005861 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
7005817 TATAAAAAAA
*
7005827 ATTATTTTATTTTTTT
1 ATTATTTTATATTTTT
7005843 ATTATTTTA-ATTTTT
1 ATTATTTTATATTTTT
7005858 ATTA
1 ATTA
7005862 AATCACCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
ATTATTTTATATTTTT
Found at i:7005982 original size:9 final size:9
Alignment explanation
Indices: 7005961--7005994 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
7005951 TTTAGTTACT
7005961 TTTTAAAAA
1 TTTTAAAAA
7005970 -TTTAAAAA
1 TTTTAAAAA
7005978 TTTTAAAAA
1 TTTTAAAAA
*
7005987 ATTTAAAA
1 TTTTAAAA
7005995 GGTTATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:7005986 original size:18 final size:18
Alignment explanation
Indices: 7005960--7005994 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7005950 ATTTAGTTAC
*
7005960 TTTTTAAAAATTTAAAAA
1 TTTTAAAAAATTTAAAAA
7005978 TTTTAAAAAATTTAAAA
1 TTTTAAAAAATTTAAAA
7005995 GGTTATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TTTTAAAAAATTTAAAAA
Found at i:7006028 original size:9 final size:9
Alignment explanation
Indices: 7006014--7006081 Score: 52
Period size: 9 Copynumber: 7.7 Consensus size: 9
7006004 TTAAAAACTA
7006014 AAAATTATT
1 AAAATTATT
7006023 AAAATTATT
1 AAAATTATT
*
7006032 AAAAAGTA-T
1 -AAAATTATT
7006041 AAAA--ATT
1 AAAATTATT
* *
7006048 ATAATTTTT
1 AAAATTATT
*
7006057 AAATATTTTT
1 AAA-ATTATT
*
7006067 AAAATTTTT
1 AAAATTATT
7006076 AAAATT
1 AAAATT
7006082 TAATTAAATG
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
6 1 0.02
7 4 0.08
8 4 0.08
9 26 0.52
10 15 0.30
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (9 bp):
AAAATTATT
Found at i:7006036 original size:19 final size:19
Alignment explanation
Indices: 7006012--7006049 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7006002 TTTTAAAAAC
* *
7006012 TAAAAATTATTAAAATTAT
1 TAAAAAGTATAAAAATTAT
7006031 TAAAAAGTATAAAAATTAT
1 TAAAAAGTATAAAAATTAT
7006050 AATTTTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (19 bp):
TAAAAAGTATAAAAATTAT
Found at i:7006082 original size:9 final size:9
Alignment explanation
Indices: 7006050--7006082 Score: 57
Period size: 9 Copynumber: 3.6 Consensus size: 9
7006040 TAAAAATTAT
7006050 AATTTTTAA
1 AATTTTTAA
7006059 ATATTTTTAA
1 A-ATTTTTAA
7006069 AATTTTTAA
1 AATTTTTAA
7006078 AATTT
1 AATTT
7006083 AATTAAATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
AATTTTTAA
Found at i:7006090 original size:19 final size:20
Alignment explanation
Indices: 7006044--7006095 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 20
7006034 AAAGTATAAA
7006044 AATTATAATTTTTAAATATTT
1 AATTA-AATTTTTAAATATTT
7006065 --TTAAAATTTTTAAA-ATTT
1 AATT-AAATTTTTAAATATTT
*
7006083 AATTAAATGTTTA
1 AATTAAATTTTTA
7006096 CATTTCATCT
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
18 4 0.15
19 20 0.74
20 3 0.11
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (20 bp):
AATTAAATTTTTAAATATTT
Found at i:7008347 original size:18 final size:20
Alignment explanation
Indices: 7008310--7008348 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
7008300 CATTGCTGAA
*
7008310 TAAATAAAAATTATGATTAT
1 TAAATAAAAATCATGATTAT
7008330 TAAA-AAAAATCATG-TTAT
1 TAAATAAAAATCATGATTAT
7008348 T
1 T
7008349 TTGTTTTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 9 0.50
20 4 0.22
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (20 bp):
TAAATAAAAATCATGATTAT
Found at i:7021460 original size:25 final size:25
Alignment explanation
Indices: 7021405--7021460 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
7021395 GACGTATGTG
* * * *
7021405 TATAAAATTATTTGAATATAATATC
1 TATATAATAATTTAAATATAATATA
* *
7021430 TTTATAATAATTTAAATATATTATA
1 TATATAATAATTTAAATATAATATA
7021455 TATATA
1 TATATA
7021461 GGTTTTTTTG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (25 bp):
TATATAATAATTTAAATATAATATA
Found at i:7032076 original size:11 final size:11
Alignment explanation
Indices: 7032058--7032095 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
7032048 ACAATAACAA
7032058 TAAAATAATAG
1 TAAAATAATAG
*
7032069 TAATATAATAG
1 TAAAATAATAG
*
7032080 GAAAATAATAG
1 TAAAATAATAG
7032091 TAAAA
1 TAAAA
7032096 AAATGAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.63, C:0.00, G:0.11, T:0.26
Consensus pattern (11 bp):
TAAAATAATAG
Found at i:7036087 original size:21 final size:21
Alignment explanation
Indices: 7036061--7036118 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
7036051 GGTGAATCAG
7036061 CTCTTACGAGCTTCTGTTCAA
1 CTCTTACGAGCTTCTGTTCAA
* *
7036082 CTCTTACAAGCTTCTGTTCAG
1 CTCTTACGAGCTTCTGTTCAA
*
7036103 CT-TT-TGAGCTTCTGTT
1 CTCTTACGAGCTTCTGTT
7036119 GGCATATTCG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.30
20 2 0.06
21 21 0.64
ACGTcount: A:0.16, C:0.26, G:0.16, T:0.43
Consensus pattern (21 bp):
CTCTTACGAGCTTCTGTTCAA
Found at i:7043234 original size:77 final size:77
Alignment explanation
Indices: 7043106--7043253 Score: 226
Period size: 77 Copynumber: 1.9 Consensus size: 77
7043096 CATTCCCTAA
* * *
7043106 TTCCAACAAGGATTGTGTCCGATTTAGTTGAAATTAGAGTCAAGTACAAATGTACCATGATATTA
1 TTCCAACAAGGATTGAGTCAGATTTAGTTGAAATTAGAGTCAAGTACAAATGTACAATGATATTA
7043171 ACTAAAGGATAG
66 ACTAAAGGATAG
* * *
7043183 TTCCAACAAGGATTGAGTCA-AGTTTGGTTGAAATTAGAGTTAAGTAGAAATGTACAATGATATT
1 TTCCAACAAGGATTGAGTCAGA-TTTAGTTGAAATTAGAGTCAAGTACAAATGTACAATGATATT
7043247 AACTAAA
65 AACTAAA
7043254 AGGGTAGGGT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
76 1 0.02
77 63 0.98
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (77 bp):
TTCCAACAAGGATTGAGTCAGATTTAGTTGAAATTAGAGTCAAGTACAAATGTACAATGATATTA
ACTAAAGGATAG
Found at i:7057961 original size:21 final size:23
Alignment explanation
Indices: 7057912--7057966 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 23
7057902 TGAAAATTAT
* *
7057912 TAATTTTTAAAATTATTTCTAAA
1 TAATATTTAAAATTATATCTAAA
7057935 -AA-ATTTAAAATT-TATC-AAA
1 TAATATTTAAAATTATATCTAAA
7057954 TAATATTTAAAAT
1 TAATATTTAAAAT
7057967 ACATTTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
19 3 0.11
20 5 0.18
21 18 0.64
22 2 0.07
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (23 bp):
TAATATTTAAAATTATATCTAAA
Found at i:7060861 original size:16 final size:17
Alignment explanation
Indices: 7060840--7060874 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
7060830 TTTAATGTCC
7060840 AATTTAATT-TTTAATT
1 AATTTAATTATTTAATT
*
7060856 AATTTAATTATTTATTT
1 AATTTAATTATTTAATT
7060873 AA
1 AA
7060875 GCTGTTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
AATTTAATTATTTAATT
Found at i:7061771 original size:22 final size:23
Alignment explanation
Indices: 7061730--7061772 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
7061720 CTATTGGTTC
*
7061730 AAATCTTCTAAAATCAAACAAAA
1 AAATCTTCTAAAACCAAACAAAA
*
7061753 AAATCTT-TAAAACCCAACAA
1 AAATCTTCTAAAACCAAACAA
7061773 CTTTTGAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.58, C:0.21, G:0.00, T:0.21
Consensus pattern (23 bp):
AAATCTTCTAAAACCAAACAAAA
Found at i:7061983 original size:83 final size:84
Alignment explanation
Indices: 7061813--7061985 Score: 217
Period size: 83 Copynumber: 2.1 Consensus size: 84
7061803 CGCTACACCA
*
7061813 ACCATCCGGAATGCTCCCTCCCCATACACAAATCTATAGTATGATTAGTCATTCATGTTCTTTAG
1 ACCATCCGGAATGCTCCCTCCCCATACACAAATCTATAGGATGATTAGTCATTCATGTTCTTTAG
*
7061878 ATCTGCCAAAATTTCTTAG
66 ATCTACCAAAATTTCTTAG
* *
7061897 ACCATCCTGAACT-CTCCCTTCCCGA-ACACAAATCTATAGGATGA-TAGTCATTCATGTTCTTT
1 ACCATCCGGAA-TGCTCCC-TCCCCATACACAAATCTATAGGATGATTAGTCATTCATGTTCTTT
* * *** *
7061959 GGATTTATTGAAATTTGTTAG
64 AGATCTACCAAAATTTCTTAG
7061980 ACCATC
1 ACCATC
7061986 TTAAATTATT
Statistics
Matches: 77, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
83 38 0.49
84 33 0.43
85 6 0.08
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (84 bp):
ACCATCCGGAATGCTCCCTCCCCATACACAAATCTATAGGATGATTAGTCATTCATGTTCTTTAG
ATCTACCAAAATTTCTTAG
Found at i:7063300 original size:15 final size:15
Alignment explanation
Indices: 7063280--7063312 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
7063270 CATGAGTACT
7063280 AATTTTGCTCACAAC
1 AATTTTGCTCACAAC
7063295 AATTTTGCTCACAAC
1 AATTTTGCTCACAAC
7063310 AAT
1 AAT
7063313 ATCACCACGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.33
Consensus pattern (15 bp):
AATTTTGCTCACAAC
Found at i:7072701 original size:13 final size:13
Alignment explanation
Indices: 7072685--7072717 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
7072675 TTTAATTAAA
*
7072685 TTAGTTAATTAGT
1 TTAGATAATTAGT
7072698 TTAGATAATTAGT
1 TTAGATAATTAGT
7072711 TTA-ATAA
1 TTAGATAA
7072718 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:7080698 original size:22 final size:23
Alignment explanation
Indices: 7080646--7080703 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
7080636 TTTAGAAACT
*
7080646 TTATTTCTTATAAATAAATTATA
1 TTATTTTTTATAAATAAATTATA
** *
7080669 ACACTTTTTATAAATAAA-TATA
1 TTATTTTTTATAAATAAATTATA
7080691 TTATTTTTTATAA
1 TTATTTTTTATAA
7080704 TATATAGGCT
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (23 bp):
TTATTTTTTATAAATAAATTATA
Found at i:7080840 original size:85 final size:87
Alignment explanation
Indices: 7080723--7080904 Score: 230
Period size: 89 Copynumber: 2.1 Consensus size: 87
7080713 TTAAGGGTGT
* *
7080723 AAAAAG-CCTTCAAACTTTTTCAAAAAATGCAATTAAG-CCC-CTTTTTTTATG-TTCAATTGGA
1 AAAAAGACCTTCAAACTTTTTCAAAAAAAGCAATTAAGACCCACTTTTTTT-TGACTCAATTGGA
* *
7080784 TACTTGAACTTTCAAAATGCATC
65 TACTTGAAATTTCAAAATACATC
*
7080807 AAAAAGACCTTCAAA-TATTTTCAAAAAAAGCAATTATGACCCTACTTTTTTTTGCACTCAATTG
1 AAAAAGACCTTCAAACT-TTTTCAAAAAAAGCAATTAAGACCC-ACTTTTTTTTG-ACTCAATTG
*
7080871 GGTACTTGAAATTTCAAAATACATC
63 GATACTTGAAATTTCAAAATACATC
*
7080896 AATAAGACC
1 AAAAAGACC
7080905 CTCTAATTTT
Statistics
Matches: 84, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
84 7 0.08
85 27 0.32
86 3 0.04
87 2 0.02
88 8 0.10
89 37 0.44
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (87 bp):
AAAAAGACCTTCAAACTTTTTCAAAAAAAGCAATTAAGACCCACTTTTTTTTGACTCAATTGGAT
ACTTGAAATTTCAAAATACATC
Found at i:7080886 original size:89 final size:86
Alignment explanation
Indices: 7080723--7080993 Score: 237
Period size: 93 Copynumber: 3.1 Consensus size: 86
7080713 TTAAGGGTGT
* * * *
7080723 AAAAAG-CCTTCAAACTTTTTCAAAAAATGCAATTAAGCCC-CTTTTTTTATG--TTCAATTGGA
1 AAAAAGACCTTCAAA-TTTTTCAAAAAAAGCAATTATGCCCTCTTTTTTT-TGCACTCAATTGGG
*
7080784 TACTTGAACTTTCAAAATGCATC
64 TACTTGAAATTTCAAAATGCATC
7080807 AAAAAGACCTTCAAATATTTTCAAAAAAAGCAATTATGACCCTACTTTTTTTTGCACTCAATTGG
1 AAAAAGACCTTCAAAT-TTTTCAAAAAAAGCAATTATG-CCCT-CTTTTTTTTGCACTCAATTGG
*
7080872 GTACTTGAAATTTCAAAATACATC
63 GTACTTGAAATTTCAAAATGCATC
* * * * * * * *
7080896 AATAAGACCCTCTAATTTTTTCGACAAAAAAAAACAATTAATTCACTGCATTTTTTTGCACTTAA
1 AAAAAGACCTTC-AAATTTTT---C-AAAAAAAGCAATT-ATGCCCT-CTTTTTTTTGCACTCAA
* * *
7080961 TTGAGTACTTG-AATTGTCAAAATGTATA
59 TTGGGTACTTGAAATT-TCAAAATGCATC
7080989 AAAAA
1 AAAAA
7080994 ATCCCATTTA
Statistics
Matches: 153, Mismatches: 20, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
84 7 0.05
85 27 0.18
86 3 0.02
87 2 0.01
88 8 0.05
89 43 0.28
90 3 0.02
92 5 0.03
93 53 0.35
94 2 0.01
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (86 bp):
AAAAAGACCTTCAAATTTTTCAAAAAAAGCAATTATGCCCTCTTTTTTTTGCACTCAATTGGGTA
CTTGAAATTTCAAAATGCATC
Found at i:7084640 original size:22 final size:22
Alignment explanation
Indices: 7084609--7084652 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7084599 AAATTATGAT
7084609 TTAAATTTTAAAACATT-TTAA
1 TTAAATTTTAAAACATTGTTAA
*
7084630 TTAAACTTTTAAAATATTGTTAA
1 TTAAA-TTTTAAAACATTGTTAA
7084653 CATTTTTCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (22 bp):
TTAAATTTTAAAACATTGTTAA
Found at i:7085966 original size:17 final size:16
Alignment explanation
Indices: 7085927--7085969 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
7085917 CACCAAAAAA
*
7085927 AATATAAAAAATTATG
1 AATATAAAAAAATATG
*
7085943 -TTATAAAAATAATATG
1 AATATAAAAA-AATATG
7085959 AATATAAAAAA
1 AATATAAAAAA
7085970 CTACTAATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
15 8 0.36
16 6 0.27
17 8 0.36
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (16 bp):
AATATAAAAAAATATG
Found at i:7086485 original size:6 final size:6
Alignment explanation
Indices: 7086474--7086504 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
7086464 CGATTTTCTG
7086474 CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC C
1 CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC C
7086505 CATCCTTGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32
Consensus pattern (6 bp):
CTTCCC
Found at i:7087326 original size:27 final size:27
Alignment explanation
Indices: 7087288--7087342 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
7087278 TATTGATACC
7087288 GACTAAACTGTTAGAATTTAAGGCTGT
1 GACTAAACTGTTAGAATTTAAGGCTGT
*
7087315 GACTAAACTGTTAGAATTTAAGGTTGT
1 GACTAAACTGTTAGAATTTAAGGCTGT
7087342 G
1 G
7087343 CTGTTAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.35
Consensus pattern (27 bp):
GACTAAACTGTTAGAATTTAAGGCTGT
Found at i:7088613 original size:21 final size:22
Alignment explanation
Indices: 7088587--7088633 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
7088577 CTCTGCTCAA
*
7088587 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
7088608 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
7088630 ACTC
1 ACTC
7088634 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:7093606 original size:19 final size:19
Alignment explanation
Indices: 7093562--7093599 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
7093552 CATCTAAACA
7093562 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
7093581 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
7093600 TCCGAAATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:7093627 original size:14 final size:13
Alignment explanation
Indices: 7093591--7093616 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7093581 CCAGAAAAGT
7093591 AAATCATTTTCCG
1 AAATCATTTTCCG
7093604 AAATCATTTTCCG
1 AAATCATTTTCCG
7093617 GAAAATATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (13 bp):
AAATCATTTTCCG
Found at i:7093938 original size:16 final size:16
Alignment explanation
Indices: 7093917--7093986 Score: 86
Period size: 16 Copynumber: 4.4 Consensus size: 16
7093907 TTTGGTTCGC
* * *
7093917 TGTATTGGATTAGAGA
1 TGTAATGGAATAGAGG
* *
7093933 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
7093949 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
*
7093965 TGTAATGGAATAGATG
1 TGTAATGGAATAGAGG
7093981 TGTAAT
1 TGTAAT
7093987 AGCAAATCAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:7094070 original size:39 final size:43
Alignment explanation
Indices: 7093965--7094074 Score: 120
Period size: 45 Copynumber: 2.6 Consensus size: 43
7093955 GGAATAGAGG
7093965 TGTAATGGAATAGATGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGATGTGTAATAGCAAATCAACTGTTTGGTT--A
* * * ***
7094010 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGATGTGTAATAGCAAATCAACTGTTTGGTTA
7094050 TG-AATGGAATAGATGTGTAATAGCA
1 TGTAATGGAATAGATGTGTAATAGCA
7094075 TAATGGAAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
39 19 0.35
40 2 0.04
43 1 0.02
44 11 0.20
45 22 0.40
ACGTcount: A:0.34, C:0.05, G:0.27, T:0.34
Consensus pattern (43 bp):
TGTAATGGAATAGATGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:7094242 original size:18 final size:17
Alignment explanation
Indices: 7094220--7094254 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7094210 TTATTATTAA
*
7094220 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
7094238 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
7094255 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:7094313 original size:61 final size:61
Alignment explanation
Indices: 7094235--7094554 Score: 238
Period size: 61 Copynumber: 5.3 Consensus size: 61
7094225 TTTTAATTAA
* *
7094235 AATATATAAT-TTAATAAAATTCTTAATAATTAATATTCTGATATGAATTTACTCAAATAAT
1 AATATATAATACT-ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATAAT
* * * * * * *
7094296 AATATATGATACTATAAAA-TATAAATTAACATAATTATTATTAAAT--ATATTA-T-AATTAA-
1 AATATATAATACTATAAAATTCTTAA-TAA-TTAA-TATTCTTATATGAAT-TTACTCAAATAAT
* *
7094355 AATATATAAT-TTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATACT-ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATAAT
* ** * * * * *
7094416 AATATATGATACTATAAAA--GATAAT--TTAACATAATTATTAT-TAAATATATCTTAATTAA-
1 AATATATAATACTATAAAATTCTTAATAATT-A-AT-ATTCTTATATGAATTTA-CTCAAATAAT
* *
7094475 AATATATAAT-TTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATACT-ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATAAT
*
7094536 AATATATTATACTATAAAA
1 AATATATAATACTATAAAA
7094555 GATAATTTGA
Statistics
Matches: 194, Mismatches: 40, Indels: 50
0.68 0.14 0.18
Matches are distributed among these distances:
57 11 0.06
58 9 0.05
59 48 0.25
60 43 0.22
61 63 0.32
62 10 0.05
63 10 0.05
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.42
Consensus pattern (61 bp):
AATATATAATACTATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATAAT
Found at i:7094368 original size:14 final size:15
Alignment explanation
Indices: 7094319--7094370 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
7094309 ATAAAATATA
7094319 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
7094334 TATTAAATATATTAT
1 AATTAAATATATTAT
7094349 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
7094362 AATTTAATA
1 AATTAAATA
7094371 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:7094626 original size:120 final size:120
Alignment explanation
Indices: 7094206--7094615 Score: 723
Period size: 120 Copynumber: 3.4 Consensus size: 120
7094196 ATATTTAAAT
7094206 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
* * * *
7094271 TCTGATATGAATTTACTCAAATAATAATATATGATACTATAAAATATAAATTAAC
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAAC
*
7094326 ATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
7094391 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAAC
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAAC
*
7094446 ATAATTATTATTAAATATATCTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
*
7094511 TCTTATATGAATTTACTCAAATCATAATATATTATACTATAAAAGATAATTTGAA-
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTT-AAC
* *
7094566 ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
7094616 TAAAATAATT
Statistics
Matches: 278, Mismatches: 11, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
120 276 0.99
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAAC
Found at i:7094724 original size:38 final size:39
Alignment explanation
Indices: 7094654--7094736 Score: 141
Period size: 38 Copynumber: 2.2 Consensus size: 39
7094644 TAAGTGAGTA
7094654 AGAATTGAACTCTAAAAATAAAAAAAAACATAACCATAT
1 AGAATTGAACTCTAAAAATAAAAAAAAACATAACCATAT
*
7094693 AGAATTGAACTCTAAAAA-AAAAAAAAACATAATCATAT
1 AGAATTGAACTCTAAAAATAAAAAAAAACATAACCATAT
*
7094731 TGAATT
1 AGAATT
7094737 ATCATCAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
38 24 0.57
39 18 0.43
ACGTcount: A:0.60, C:0.11, G:0.06, T:0.23
Consensus pattern (39 bp):
AGAATTGAACTCTAAAAATAAAAAAAAACATAACCATAT
Found at i:7109722 original size:12 final size:12
Alignment explanation
Indices: 7109705--7109752 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
7109695 TGGGAGTAAA
7109705 GTTTTATATTTG
1 GTTTTATATTTG
*
7109717 GTTTTATATGTTAAA
1 GTTTTATAT-TT--G
7109732 GTTTTATATTTG
1 GTTTTATATTTG
7109744 GTTTTATAT
1 GTTTTATAT
7109753 GTTAATGACA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
12 18 0.58
13 2 0.06
14 2 0.06
15 9 0.29
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (12 bp):
GTTTTATATTTG
Found at i:7109735 original size:27 final size:27
Alignment explanation
Indices: 7109701--7109757 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
7109691 TTAGTGGGAG
7109701 TAAAGTTTTATATTTGGTTTTATATGT
1 TAAAGTTTTATATTTGGTTTTATATGT
7109728 TAAAGTTTTATATTTGGTTTTATATGT
1 TAAAGTTTTATATTTGGTTTTATATGT
7109755 TAA
1 TAA
7109758 TGACATATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.58
Consensus pattern (27 bp):
TAAAGTTTTATATTTGGTTTTATATGT
Found at i:7114552 original size:20 final size:20
Alignment explanation
Indices: 7114527--7114567 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
7114517 GGCCATAAAA
7114527 TCCTTAAAGCCACAACCAAG
1 TCCTTAAAGCCACAACCAAG
7114547 TCCTTAAAGCCACAACCAAG
1 TCCTTAAAGCCACAACCAAG
7114567 T
1 T
7114568 AGATGATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.34, G:0.10, T:0.17
Consensus pattern (20 bp):
TCCTTAAAGCCACAACCAAG
Found at i:7117153 original size:57 final size:57
Alignment explanation
Indices: 7117065--7117182 Score: 218
Period size: 57 Copynumber: 2.1 Consensus size: 57
7117055 ATGGCATTAG
*
7117065 TTGTCGGCCATGGATTCGAGAATTACAGTCGAGCATCGTAGCAAGGTAAATCATAGT
1 TTGTCGGCCATGGATTCGAGAATTACAGTCGAGCATCATAGCAAGGTAAATCATAGT
*
7117122 TTGTCGGCCATGGATTTGAGAATTACAGTCGAGCATCATAGCAAGGTAAATCATAGT
1 TTGTCGGCCATGGATTCGAGAATTACAGTCGAGCATCATAGCAAGGTAAATCATAGT
7117179 TTGT
1 TTGT
7117183 TACTGCAATG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (57 bp):
TTGTCGGCCATGGATTCGAGAATTACAGTCGAGCATCATAGCAAGGTAAATCATAGT
Found at i:7118692 original size:13 final size:11
Alignment explanation
Indices: 7118664--7118706 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
7118654 AGTTAAATAT
7118664 TATTTTATTAA
1 TATTTTATTAA
7118675 TATTTTACTTAGA
1 TATTTTA-TTA-A
*
7118688 TA-TTTATTAT
1 TATTTTATTAA
7118698 TATTTTATT
1 TATTTTATT
7118707 TAGAAAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 2 0.07
11 16 0.57
12 7 0.25
13 3 0.11
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:7118693 original size:23 final size:23
Alignment explanation
Indices: 7118667--7118710 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
7118657 TAAATATTAT
7118667 TTTATTAATATTTTACTTAGATA
1 TTTATTAATATTTTACTTAGATA
* *
7118690 TTTATTATTATTTTATTTAGA
1 TTTATTAATATTTTACTTAGA
7118711 AAATGGTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (23 bp):
TTTATTAATATTTTACTTAGATA
Found at i:7130672 original size:11 final size:10
Alignment explanation
Indices: 7130658--7130695 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
7130648 TTAGTACTTA
7130658 TTTTTTTCTTC
1 TTTTTTT-TTC
7130669 -TTTTTTTTC
1 TTTTTTTTTC
7130678 TTTTTTTTTTC
1 -TTTTTTTTTC
7130689 TTTTTTT
1 TTTTTTT
7130696 AAATTTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
9 3 0.12
10 13 0.52
11 9 0.36
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:7130675 original size:12 final size:11
Alignment explanation
Indices: 7130658--7130695 Score: 67
Period size: 11 Copynumber: 3.4 Consensus size: 11
7130648 TTAGTACTTA
7130658 TTTTTTTCTTCT
1 TTTTTTTCTT-T
7130670 TTTTTTTCTTT
1 TTTTTTTCTTT
7130681 TTTTTTTCTTT
1 TTTTTTTCTTT
7130692 TTTT
1 TTTT
7130696 AAATTTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 16 0.62
12 10 0.38
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:7130683 original size:20 final size:20
Alignment explanation
Indices: 7130658--7130695 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7130648 TTAGTACTTA
7130658 TTTTTTTCTTCTTTTTTTTC
1 TTTTTTTCTTCTTTTTTTTC
*
7130678 TTTTTTTTTTCTTTTTTT
1 TTTTTTTCTTCTTTTTTT
7130696 AAATTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (20 bp):
TTTTTTTCTTCTTTTTTTTC
Found at i:7130702 original size:20 final size:21
Alignment explanation
Indices: 7130657--7130702 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
7130647 ATTAGTACTT
*
7130657 ATTTTTTTCTTCTTTTTTT-T
1 ATTTTTTTCTTCTTTTTTTAA
* *
7130677 CTTTTTTTTTTCTTTTTTTAA
1 ATTTTTTTCTTCTTTTTTTAA
7130698 ATTTT
1 ATTTT
7130703 ATTATTATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.83
Consensus pattern (21 bp):
ATTTTTTTCTTCTTTTTTTAA
Done.