Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 190 of 344
Found at i:63533570 original size:23 final size:23
Alignment explanation
Indices: 63533544--63533601 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
63533534 TAGAATGTCA
* *
63533544 GTATGGCGTTTTCTGTAAAACTT
1 GTATGGCGTATTCGGTAAAACTT
* *
63533567 GTATGGAGTATTCGGTAAAGCTT
1 GTATGGCGTATTCGGTAAAACTT
63533590 -TCATGGCGTATT
1 GT-ATGGCGTATT
63533602 TGGAGATATT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 1 0.03
23 28 0.97
ACGTcount: A:0.22, C:0.12, G:0.26, T:0.40
Consensus pattern (23 bp):
GTATGGCGTATTCGGTAAAACTT
Found at i:63536825 original size:34 final size:34
Alignment explanation
Indices: 63536782--63536849 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
63536772 GGGTAGATGA
63536782 CTTAATTGATAAATAAATAATAAACCTAAAGGCT
1 CTTAATTGATAAATAAATAATAAACCTAAAGGCT
63536816 CTTAATTGATAAATAAATAATAAACCTAAAGGCT
1 CTTAATTGATAAATAAATAATAAACCTAAAGGCT
63536850 AGCTATCATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.50, C:0.12, G:0.09, T:0.29
Consensus pattern (34 bp):
CTTAATTGATAAATAAATAATAAACCTAAAGGCT
Found at i:63537699 original size:49 final size:48
Alignment explanation
Indices: 63537638--63537793 Score: 156
Period size: 49 Copynumber: 3.2 Consensus size: 48
63537628 GAGGTGTGTT
* *
63537638 AGTGTAACACCTGTCTAAGACATGGCATCGACATAGATAAGTGAGAGCC
1 AGTGTAAGACCTGTCTAGGACATGGCATCGACATAGAT-AGTGAGAGCC
* * * **
63537687 AGTGTAAGACCTGTCTAGGACATGGCATCGTCCTCGAT-GT-ATGTAAGTT
1 AGTGTAAGACCTGTCTAGGACATGGCATCGACATAGATAGTGA-G--AGCC
* * *
63537736 AGTGTAAGACCTGTCTGGGACATGGCATCAACTTAGAT-GTGAGAGCC
1 AGTGTAAGACCTGTCTAGGACATGGCATCGACATAGATAGTGAGAGCC
*
63537783 AATGTAAGACC
1 AGTGTAAGACC
63537794 ATGTTTGGAA
Statistics
Matches: 88, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
46 1 0.01
47 15 0.17
49 71 0.81
50 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTAGGACATGGCATCGACATAGATAGTGAGAGCC
Found at i:63537713 original size:93 final size:95
Alignment explanation
Indices: 63537594--63537793 Score: 246
Period size: 98 Copynumber: 2.1 Consensus size: 95
63537584 TATGCAAGCT
* * * * *
63537594 AGTGTAAAACCTGTCTTGGACATGGCATCG-GCTTGA-G-GTGT-GTTAGTGTAACACCTGTCTA
1 AGTGTAAGACCTGTCTAGGACATGGCATCGTCCTCGATGTATGTAGTTAGTGTAACACCTGTCTA
*
63537655 AGACATGGCATCGACATAGATAAGTGAGAGCC
66 AGACATGGCATCAACATAGAT--GTGAGAGCC
*
63537687 AGTGTAAGACCTGTCTAGGACATGGCATCGTCCTCGATGTATGTAAGTTAGTGTAAGACCTGTCT
1 AGTGTAAGACCTGTCTAGGACATGGCATCGTCCTCGATGTATGT-AGTTAGTGTAACACCTGTCT
** *
63537752 GGGACATGGCATCAACTTAGATGTGAGAGCC
65 AAGACATGGCATCAACATAGATGTGAGAGCC
*
63537783 AATGTAAGACC
1 AGTGTAAGACC
63537794 ATGTTTGGAA
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
93 28 0.31
94 4 0.04
95 1 0.01
96 22 0.24
98 36 0.40
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (95 bp):
AGTGTAAGACCTGTCTAGGACATGGCATCGTCCTCGATGTATGTAGTTAGTGTAACACCTGTCTA
AGACATGGCATCAACATAGATGTGAGAGCC
Found at i:63545325 original size:49 final size:49
Alignment explanation
Indices: 63545264--63545370 Score: 144
Period size: 49 Copynumber: 2.2 Consensus size: 49
63545254 TATAATCAAT
* *
63545264 ATGGCATTGGCCTCAAGGTATGCAAG-CTAGTGTAAGACCTGTCTGGGAC
1 ATGGCATCGGCCTCAAGGTATGCAAGTC-AGTGTAAGACCTGTCTAGGAC
* * *
63545313 ATGGCATCGGCCTCGATGTATGTAAGTCAGTGTAAGACCTGTCTAGGAC
1 ATGGCATCGGCCTCAAGGTATGCAAGTCAGTGTAAGACCTGTCTAGGAC
*
63545362 ATGCCATCG
1 ATGGCATCG
63545371 ACTTAAATGT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
49 50 0.98
50 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (49 bp):
ATGGCATCGGCCTCAAGGTATGCAAGTCAGTGTAAGACCTGTCTAGGAC
Found at i:63547368 original size:23 final size:23
Alignment explanation
Indices: 63547342--63547439 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
63547332 ATAAGTGCCA
63547342 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
63547365 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
63547388 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
63547410 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
63547433 CACTGAT
1 CACTGAT
63547440 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:63547407 original size:45 final size:45
Alignment explanation
Indices: 63547349--63547437 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
63547339 CCACACTGAT
* *
63547349 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
63547394 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
63547438 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:63549747 original size:18 final size:17
Alignment explanation
Indices: 63549714--63549752 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
63549704 TTGTATAAAT
63549714 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
63549732 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
63549749 TGTG
1 TGTG
63549753 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:63550005 original size:23 final size:23
Alignment explanation
Indices: 63549978--63550075 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
63549968 AGTGTTTTTG
63549978 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
63550001 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
63550024 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
63550046 ATCAATGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
63550069 ATCAGTG
1 ATCAGTG
63550076 TGGCACTTAT
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
22 20 0.30
23 47 0.70
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:63550044 original size:45 final size:45
Alignment explanation
Indices: 63549980--63550068 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
63549970 TGTTTTTGAT
* * *
63549980 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAATGGTAGCTTCGGCTACATC
63550025 CAGTGGTAGCTTCGGCTACATATCAATGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAATGGTAGCTTCGGCTACAT
63550069 ATCAGTGTGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAATGGTAGCTTCGGCTACATC
Found at i:63554077 original size:39 final size:39
Alignment explanation
Indices: 63554006--63554175 Score: 272
Period size: 39 Copynumber: 4.3 Consensus size: 39
63553996 GCTCCTCGTT
* * *
63554006 CAAATGCCTTCGGGACATAGCCTGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
63554046 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
63554085 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
63554124 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
63554163 CAAATGCCTTCGG
1 CAAATGCCTTCGG
63554176 ATCTTAGTCC
Statistics
Matches: 125, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
38 2 0.02
39 108 0.86
40 15 0.12
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:63554134 original size:78 final size:79
Alignment explanation
Indices: 63554006--63554223 Score: 277
Period size: 78 Copynumber: 2.8 Consensus size: 79
63553996 GCTCCTCGTT
* *
63554006 CAAATGCCTTCGGGACATAGCCTGGTTATAGTAATTCGCACAAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGCTTAGCCCGGA
63554071 ATTAGTATCTCGCA
66 ATTAGTATCTCGCA
*
63554085 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTCGGGCTTAGCCCG
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGCTTAGCCCG
63554147 GAATTAGTATCTCGCA
64 GAATTAGTATCTCGCA
* * * * *
63554163 CAAATGCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGT-AATTCGCACAAATGCCTTCGGG-CTTAGCC
63554224 TAGACATCAT
Statistics
Matches: 124, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
77 5 0.04
78 76 0.61
79 36 0.29
80 6 0.05
81 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGCTTAGCCCGGA
ATTAGTATCTCGCA
Found at i:63554214 original size:117 final size:119
Alignment explanation
Indices: 63554006--63554223 Score: 272
Period size: 117 Copynumber: 1.8 Consensus size: 119
63553996 GCTCCTCGTT
* *
63554006 CAAATGCCTTCGGGACATAGCCTGGTTATAGTAATTCGCACAAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGCTTAGCCCGGA
*
63554071 ATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATTAGTATCTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * *
63554124 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTCGGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGG-GCTTAGCCC
63554186 GGATATT-GTCA-CTTAGCAC-AA-GCCTTCGGGACTTAGCC
63 GGA-ATTAGT-ATC-TAGCACAAATGCCTTCGGGACTTAGCC
63554224 TAGACATCAT
Statistics
Matches: 87, Mismatches: 6, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
116 3 0.03
117 39 0.45
118 36 0.41
119 9 0.10
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGCTTAGCCCGGA
ATTAGTATCTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:63565954 original size:12 final size:12
Alignment explanation
Indices: 63565937--63565966 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
63565927 CCACCATCCA
63565937 GTGAGCTCCCCG
1 GTGAGCTCCCCG
*
63565949 GTGAGCTCTCCG
1 GTGAGCTCCCCG
63565961 GTGAGC
1 GTGAGC
63565967 CTCAACATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.33, G:0.37, T:0.20
Consensus pattern (12 bp):
GTGAGCTCCCCG
Found at i:63571376 original size:27 final size:27
Alignment explanation
Indices: 63571324--63571377 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
63571314 ATAAGAGGAT
* **
63571324 TAGTTCTTCATGGAATCTGTAAACACA
1 TAGTTCCTCATGGAATCCATAAACACA
*
63571351 TAGTTCCTCATGGAATCCATATACACA
1 TAGTTCCTCATGGAATCCATAAACACA
63571378 ATAAACTTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.31
Consensus pattern (27 bp):
TAGTTCCTCATGGAATCCATAAACACA
Found at i:63571597 original size:19 final size:19
Alignment explanation
Indices: 63571569--63571605 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
63571559 CAAAAAAACT
63571569 AAAAACTAAAATA-CAAAG
1 AAAAACTAAAATATCAAAG
63571587 AAAAACTTAAAATATCAAA
1 AAAAAC-TAAAATATCAAA
63571606 AGTTATCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 7 0.41
20 4 0.24
ACGTcount: A:0.70, C:0.11, G:0.03, T:0.16
Consensus pattern (19 bp):
AAAAACTAAAATATCAAAG
Found at i:63573737 original size:50 final size:50
Alignment explanation
Indices: 63573681--63573906 Score: 218
Period size: 50 Copynumber: 4.6 Consensus size: 50
63573671 AGATGTGCCC
*
63573681 GTGTAAGACCATGTCTGGAATATGGCATCGGCAC-GGATATGTGAGAGCTA
1 GTGTAAGACCATGTCTGGAACATGGCATCGGCACTGGATAT-TGAGAGCTA
* * * *
63573731 GTGTAAGACCATGTCTAGG-ATATGGAATTGGCAC-GGATATGTGAGAGTTA
1 GTGTAAGACCATGTCT-GGAACATGGCATCGGCACTGGATAT-TGAGAGCTA
* * * * *
63573781 GTGTAAGACCATGTCTGGGACATGGCGTTGGC-CTCGAT-TTCGATAGCTA
1 GTGTAAGACCATGTCTGGAACATGGCATCGGCACTGGATATT-GAGAGCTA
* *
63573830 GTGTAAGACCATGTCTAGAACATGGCATC-G-ACTTGATA--GATGAGCTA
1 GTGTAAGACCATGTCTGGAACATGGCATCGGCACTGGATATTGA-GAGCTA
* *
63573877 GTGTAAGACCATGTCTGGGACATGACATCG
1 GTGTAAGACCATGTCTGGAACATGGCATCG
63573907 ACATTATACC
Statistics
Matches: 150, Mismatches: 18, Indels: 18
0.81 0.10 0.10
Matches are distributed among these distances:
46 2 0.01
47 31 0.21
48 7 0.05
49 35 0.23
50 73 0.49
51 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.26
Consensus pattern (50 bp):
GTGTAAGACCATGTCTGGAACATGGCATCGGCACTGGATATTGAGAGCTA
Found at i:63573806 original size:100 final size:96
Alignment explanation
Indices: 63573681--63573906 Score: 235
Period size: 99 Copynumber: 2.3 Consensus size: 96
63573671 AGATGTGCCC
* * *
63573681 GTGTAAGACCATGTCTGGAATATGGCATCGGCAC-GGATATGT-GAGAGCTAGTGTAAGACCATG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAT-T-TCGAGAGCTAGTGTAAGACCATG
* * * *
63573744 TCTAGGATATGGAATTGGCAC-GGATATG-TGAGAGTTA
63 TCTAGAACATGGAA-TCG-ACTGGATA-GAT--GAGCTA
* * *
63573781 GTGTAAGACCATGTCTGGGACATGGCGTTGGCCTCGATTTCGATAGCTAGTGTAAGACCATGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTCGAGAGCTAGTGTAAGACCATGTCT
* *
63573846 AGAACATGGCATCGACTTGATAGATGAGCTA
66 AGAACATGGAATCGACTGGATAGATGAGCTA
*
63573877 GTGTAAGACCATGTCTGGGACATGACATCG
1 GTGTAAGACCATGTCTGGGACATGGCATCG
63573907 ACATTATACC
Statistics
Matches: 107, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
96 32 0.30
97 3 0.03
98 8 0.07
99 33 0.31
100 31 0.29
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.26
Consensus pattern (96 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTCGAGAGCTAGTGTAAGACCATGTCT
AGAACATGGAATCGACTGGATAGATGAGCTA
Found at i:63597892 original size:2 final size:2
Alignment explanation
Indices: 63597885--63597909 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
63597875 ACTTTTCATT
63597885 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
63597910 TGCTTTACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:63606917 original size:14 final size:14
Alignment explanation
Indices: 63606900--63606927 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
63606890 TTAAAGTAAG
63606900 AATTAAGAACAAAT
1 AATTAAGAACAAAT
63606914 AATTAAGAACAAAT
1 AATTAAGAACAAAT
63606928 CAAGTATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.21
Consensus pattern (14 bp):
AATTAAGAACAAAT
Found at i:63610793 original size:47 final size:47
Alignment explanation
Indices: 63610734--63610871 Score: 204
Period size: 47 Copynumber: 2.9 Consensus size: 47
63610724 TAGTATGGCG
63610734 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
63610781 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
63610828 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
63610872 TCCCGAAGGG
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 81 1.00
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.28
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:63611033 original size:37 final size:37
Alignment explanation
Indices: 63610990--63611068 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
63610980 CCGACCTCTA
* * *
63610990 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGAGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
* *
63611027 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
63611064 AAGAC
1 AAGAC
63611069 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
Found at i:63612817 original size:7 final size:6
Alignment explanation
Indices: 63612769--63612836 Score: 50
Period size: 6 Copynumber: 11.3 Consensus size: 6
63612759 TATTAAAGAG
** * * * *
63612769 AAAT-A AAATAA AAAT-A ATTTAA AAAGAT AAATAA AGATAA AAGTAAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAAT-AA
63612816 AAATAA AAATAA TAAATAA AA
1 AAATAA AAATAA -AAATAA AA
63612837 GTCTTCAAAA
Statistics
Matches: 47, Mismatches: 12, Indels: 7
0.71 0.18 0.11
Matches are distributed among these distances:
5 7 0.15
6 29 0.62
7 11 0.23
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (6 bp):
AAATAA
Found at i:63612823 original size:13 final size:13
Alignment explanation
Indices: 63612805--63612838 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
63612795 ATAAATAAAG
63612805 ATAAAAGTAAAAA
1 ATAAAAGTAAAAA
* *
63612818 ATAAAAATAATAA
1 ATAAAAGTAAAAA
63612831 ATAAAAGT
1 ATAAAAGT
63612839 CTTCAAAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.21
Consensus pattern (13 bp):
ATAAAAGTAAAAA
Found at i:63614156 original size:29 final size:30
Alignment explanation
Indices: 63614124--63614180 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
63614114 ACCATGAATA
* *
63614124 TAATTAAACTAACAA-ATTCAACCAAAAAC
1 TAATGAAACTAACAATACTCAACCAAAAAC
63614153 TAATGAAACTAACAATACTCAACCAAAA
1 TAATGAAACTAACAATACTCAACCAAAA
63614181 GTAATCGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.58, C:0.21, G:0.02, T:0.19
Consensus pattern (30 bp):
TAATGAAACTAACAATACTCAACCAAAAAC
Found at i:63620335 original size:53 final size:54
Alignment explanation
Indices: 63620265--63620461 Score: 182
Period size: 55 Copynumber: 3.6 Consensus size: 54
63620255 AACTTACCAT
* * * * *
63620265 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACTAT
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAATTACTAA
* * * * **
63620318 TGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTAGTTTA-TCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG-AAATTACT-AA
* * * * * * *
63620373 TGCCATGTCTTGACATGGTCTTATATGATTTCCTTGCCTTGTAAAAATTACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAATTACTAA
* *
63620427 TGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
63620462 AAACCCTAAT
Statistics
Matches: 112, Mismatches: 28, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
53 37 0.33
54 37 0.33
55 38 0.34
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAATTACTAA
Found at i:63624804 original size:25 final size:25
Alignment explanation
Indices: 63624766--63624817 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
63624756 AAATTTTGAG
*
63624766 TTAAATTATGCAATTGGTCCTCGTA
1 TTAAATTATACAATTGGTCCTCGTA
63624791 TTAAATTATACAATTGGTCCTCGTA
1 TTAAATTATACAATTGGTCCTCGTA
63624816 TT
1 TT
63624818 TTTTTCTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.42
Consensus pattern (25 bp):
TTAAATTATACAATTGGTCCTCGTA
Found at i:63625954 original size:33 final size:33
Alignment explanation
Indices: 63625870--63625954 Score: 109
Period size: 33 Copynumber: 2.6 Consensus size: 33
63625860 TAGTTTTAAC
** *
63625870 AAATGAAAAATATAG-AAAAATTACGTTGAAAG
1 AAATGAAAAATGGAGAAAAAATTACGTTAAAAG
* * *
63625902 AAATGAAGAAGGGATAAAAAATTACGTTAAAAG
1 AAATGAAAAATGGAGAAAAAATTACGTTAAAAG
63625935 AAATGAAAAATGGAGAAAAA
1 AAATGAAAAATGGAGAAAAA
63625955 CAGAAGAAGA
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 10 0.23
33 33 0.77
ACGTcount: A:0.61, C:0.02, G:0.19, T:0.18
Consensus pattern (33 bp):
AAATGAAAAATGGAGAAAAAATTACGTTAAAAG
Found at i:63638151 original size:26 final size:26
Alignment explanation
Indices: 63638122--63638229 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
63638112 TGGTACAAAT
63638122 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
63638148 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
63638174 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
63638200 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
63638226 TGAT
1 TGAT
63638230 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:63641217 original size:177 final size:177
Alignment explanation
Indices: 63640887--63641217 Score: 459
Period size: 177 Copynumber: 1.9 Consensus size: 177
63640877 ACATGCTCTT
* * *
63640887 TTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATTACCAATACATGGAGATAAG
1 TTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTACCAATACATAGAGATAAG
* * * * *
63640952 ATTCGCTGTCTTCAATCTGCTCCATTACTATTTAGGGAGATAAGATCTGCAATTTTTAGTCTGCT
66 ATTCACAGTCTTCAATCTGCTCCACTACTATTTAGGGAGATAAGATCTGCAATTTTCAGTCTACT
* * *
63641017 TCCTTGCTACCTCAGGAAGATAAGGCTTGTACCTTCAACCTGCTTTC
131 TCCCTACAACCTCAGGAAGATAAGGCTTGTACCTTCAACCTGCTTTC
* *
63641064 TTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTGCCGATACATAGAGATAAG
1 TTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTACCAATACATAGAGATAAG
* * * *
63641129 ATTCACAGTCTTCGATCTGCTCCACTATTACTTT-GGGAGATAAGATTTGTAATTTTCAGTCTAC
66 ATTCACAGTCTTCAATCTGCTCCACTACTA-TTTAGGGAGATAAGATCTGCAATTTTCAGTCTAC
* *
63641193 -TCCACTACAACTTCAGGGAGATAAG
130 TTCC-CTACAACCTCAGGAAGATAAG
63641218 ATCTGTAATT
Statistics
Matches: 133, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
176 3 0.02
177 127 0.95
178 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (177 bp):
TTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTACCAATACATAGAGATAAG
ATTCACAGTCTTCAATCTGCTCCACTACTATTTAGGGAGATAAGATCTGCAATTTTCAGTCTACT
TCCCTACAACCTCAGGAAGATAAGGCTTGTACCTTCAACCTGCTTTC
Found at i:63641219 original size:45 final size:45
Alignment explanation
Indices: 63641163--63641307 Score: 193
Period size: 45 Copynumber: 3.2 Consensus size: 45
63641153 CTATTACTTT
*
63641163 GGGAGATAAGATTTGTAATTTTCAGTCTACTCCACTACAACTTCA
1 GGGAGATAAGATTTGTAATTTTCAGTCTACTCCACTGCAACTTCA
*
63641208 GGGAGATAAGATCTGTAATTTTCAGTCTACTCCACTGCAACTTCA
1 GGGAGATAAGATTTGTAATTTTCAGTCTACTCCACTGCAACTTCA
* * * * ** * *
63641253 GGGAGATAAGACTGGT-ATCTTGAACCTGCTCCACTGTAACTTCA
1 GGGAGATAAGATTTGTAATTTTCAGTCTACTCCACTGCAACTTCA
63641297 GGGAGATAAGA
1 GGGAGATAAGA
63641308 CTGGTGGCTT
Statistics
Matches: 89, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
44 33 0.37
45 56 0.63
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (45 bp):
GGGAGATAAGATTTGTAATTTTCAGTCTACTCCACTGCAACTTCA
Found at i:63641305 original size:222 final size:222
Alignment explanation
Indices: 63640985--63641412 Score: 549
Period size: 222 Copynumber: 1.9 Consensus size: 222
63640975 ATTACTATTT
* * * * * *
63640985 AGGGAGATAAGATCTGCAATTTTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGGCTTGTACC
1 AGGGAGATAAGATCTGCAATTTTCAGTCTACTTCCCTGCAACCTCAGGAAGATAAGACTGGTACC
* * *
63641050 TTCAACCTGCTTTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTGCCGA
66 TTCAACCTGCTTCCCTGCTACCTCAGAGAGATAAGACTAGTGGCTAAAATCTACTCCATTGCCGA
* * * * *
63641115 TACATAGAGATAAGATTC-ACAGTCTTCGATCTGCTCCACTATTACTTTGGGAGATAAGATTTGT
131 TACATAGAGATAAGATCCGAC-GTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGT
63641179 AATTTTCAGTCTACTCCACTACAACTTC
195 AATTTTCAGTCTACTCCACTACAACTTC
* * * *
63641207 AGGGAGATAAGATCTGTAATTTTCAGTCTAC-TCCACTGCAACTTCAGGGAGATAAGACTGGTAT
1 AGGGAGATAAGATCTGCAATTTTCAGTCTACTTCC-CTGCAACCTCAGGAAGATAAGACTGGTAC
* * * * * *
63641271 CTTGAACCTGC-TCCACTG-TAACTTCAGGGAGATAAGACTGGTGGCTTAAATCTATTCCATTGC
65 CTTCAACCTGCTTCC-CTGCT-ACCTCAGAGAGATAAGACTAGTGGCTAAAATCTACTCCATTGC
* * *
63641334 CGATACATGGAGATAAGATCCGTCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCT
128 CGATACATAGAGATAAGATCCGACGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCT
63641399 GTAATTTTCAGTCT
193 GTAATTTTCAGTCT
63641413 GTTTCATTGC
Statistics
Matches: 175, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
221 6 0.03
222 168 0.96
223 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (222 bp):
AGGGAGATAAGATCTGCAATTTTCAGTCTACTTCCCTGCAACCTCAGGAAGATAAGACTGGTACC
TTCAACCTGCTTCCCTGCTACCTCAGAGAGATAAGACTAGTGGCTAAAATCTACTCCATTGCCGA
TACATAGAGATAAGATCCGACGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGTA
ATTTTCAGTCTACTCCACTACAACTTC
Found at i:63641440 original size:177 final size:178
Alignment explanation
Indices: 63641192--63641936 Score: 953
Period size: 177 Copynumber: 4.2 Consensus size: 178
63641182 TTTCAGTCTA
** * * * * * * **
63641192 CTCCACTACAACTTCAGGGAGATAAGATCTGTAATTTTCAGTCTACTCCACTGCAACTTCAGGGA
1 CTCCACTACTGCTT-AGGGAGATAAGATCTGTAATTTTCAGTCTGCTTCATTACTACCTCAGAAA
* * * * * * *
63641257 GATAAGACTGGTATCTTGAACCTGCTC-CACTG-TAACTTCAGGGAGATAAGACTGGTGGCTTAA
65 GATAAGACTTGTATCTTCAACCTACTCTC-TTGCTAACTTCAGAGAGATAAGGCTGGTGGCTAAA
** * *
63641320 ATCTATTCCATTGCCGATACATGGAGATAAGATCCGTCGTCTTCGATCTG
129 ATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCGATCTG
* * *
63641370 CTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAGTCTGTTTCATTGCTACCTCAGAAAG
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGTCTGCTTCATTACTACCTCAGAAAG
** * * *
63641435 ATAAGACTTGTATCTTCAACCTGTTCTCTTGCTATC-TCAGAGAGATAGGGCTAGTGGCTAAAAT
66 ATAAGACTTGTATCTTCAACCTACTCTCTTGCTAACTTCAGAGAGATAAGGCTGGTGGCTAAAAT
* * *
63641499 CTGCTTCATTGTCGATACATGGAGATAAGATTTGCCGTCTTCGATCTG
131 CTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCGATCTG
* * *
63641547 CTCCACTATTGCTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTTTC-TTACTACCTTAGAAA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGTCTGC-TTCATTACTACCTCAGAAA
* *
63641611 GATAAGACTTGTATCTTCAACCTACTCTCTTGCT-ACATCAGAGACATAAGGCTGGTGGCTAAAA
65 GATAAGACTTGTATCTTCAACCTACTCTCTTGCTAACTTCAGAGAGATAAGGCTGGTGGCTAAAA
* *
63641675 TCTGCTCCATTGCTGATACATGGAGATAAGATTCGCCATCTTCGATCTG
130 TCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCGATCTG
* * * * * *
63641724 CTTCACTATTGCTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTTCCTTACTACCTTAGGAAG
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGTCTGCTTCATTACTACCTCAGAAAG
* *
63641789 ATAAGACTTGTATCTTCAACCTACTCTCTTGCTACCTT-AGAGAGATAAGGTTGGTGGCTAAAAT
66 ATAAGACTTGTATCTTCAACCTACTCTCTTGCTAACTTCAGAGAGATAAGGCTGGTGGCTAAAAT
* * *
63641853 CTGCTCCATTGCTGATACATGGAGATAAGATTCGTCGTCTTCGATATG
131 CTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCGATCTG
*
63641901 CTCCACTACTACTTAGGGAGATAAGATCTGTGAATT
1 CTCCACTACTGCTTAGGGAGATAAGATCTGT-AATT
63641937 CACCGAGGTC
Statistics
Matches: 502, Mismatches: 58, Indels: 14
0.87 0.10 0.02
Matches are distributed among these distances:
176 4 0.01
177 473 0.94
178 25 0.05
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (178 bp):
CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGTCTGCTTCATTACTACCTCAGAAAG
ATAAGACTTGTATCTTCAACCTACTCTCTTGCTAACTTCAGAGAGATAAGGCTGGTGGCTAAAAT
CTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCGATCTG
Found at i:63641793 original size:399 final size:397
Alignment explanation
Indices: 63640927--63641794 Score: 861
Period size: 399 Copynumber: 2.2 Consensus size: 397
63640917 TAAAATCTGC
* * * * * * *
63640927 TCCATTACCAATACATGGAGATAAGATTCG-CTGTCTTCAATCTGCTCCATTACTA-TTTAGGGA
1 TCCATTGCC-ATACAGGGAGATAAGATCCGTC-ATCTTCAGTCTGCTCC-TTACTACCTTAGGAA
* * * *
63640990 GATAAGATCTGCAATTTTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGGCTTGTACCTTCAA
63 GATAAGATCTGCAATTTTCAGTCTGCTTCATTGCTACCTCAGAAAGATAAGACTTGTACCTTCAA
63641055 CCTGCTTTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTGCCGATACAT
128 CCTGCTTTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTGCCGATACAT
* * *
63641120 AGAGATAAGATTCACAGTCTTCGATCTGCTCCACTATTACTTTGGGAGATAAGATTTGTAATTTT
193 AGAGATAAGATTCACAGTCTTCGATCTGCTCCACTATTACTTAGGGAGATAAGATCTGCAATTTT
** * ** *
63641185 CAGTCTACTCCACTACAACTTCAGGGAGATAAGATCTGTAATTTTCAGTCTACTCCACTGCAACT
258 CAGTCTACTCCACTAC-ACTTCAGAAAGATAAGATCTGTAATCTTCAACCTACTCCACTGCAACA
* * * ** * ***
63641250 TCAGGGAGATAAGACTGGTATCTTGAACCTGCTCCACTGTAACTTCAGGGAGATAAGACTGGTGG
322 TCAGAGACATAAGACTGGTAGCTAAAACCTGCTCCACTGTAACTACAGGGAGATAAGACTGCCAG
63641315 CTTAAATCTAT
387 CTTAAATCTAT
* *
63641326 TCCATTGCCGATACATGGAGATAAGATCCGTCGTCTTC-GATCTGCTCC--ACTACTGCTTA-GA
1 TCCATTGCC-ATACAGGGAGATAAGATCCGTCATCTTCAG-TCTGCTCCTTACTAC--CTTAGGA
* * *
63641387 GAGATAAGATCTGTAATTTTCAGTCTGTTTCATTGCTACCTCAGAAAGATAAGACTTGTATCTTC
62 -AGATAAGATCTGCAATTTTCAGTCTGCTTCATTGCTACCTCAGAAAGATAAGACTTGTACCTTC
* * * * *
63641452 AACCTG-TTCTCTTGCTATCTCAGAGAGATAGGGCTAGTGGCTAAAATCTGCTTCATTGTCGATA
126 AACCTGCTT-TCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTGCCGATA
* ** * *
63641516 CATGGAGATAAGATTTGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGCAAT
190 CATAGAGATAAGATTCACAGTCTTCGATCTGCTCCACTATTACTTAGGGAGATAAGATCTGCAAT
* * *
63641581 TTTCAGTCTGCTTTCTTACTAC-CTT-AGAAAGATAAGA-CTTGT-ATCTTCAACCTACTCTC-T
255 TTTCAGTCTAC--TC-CACTACACTTCAGAAAGATAAGATC-TGTAATCTTCAACCTACTC-CAC
* * * * * * *
63641641 TGCTACATCAGAGACATAAGGCTGGTGGCTAAAATCTGCTCCATTGCTGA-TACATGGAGATAAG
315 TGCAACATCAGAGACATAAGACTGGTAGCTAAAACCTGCTCCACTG-TAACTACAGGGAGATAAG
* * ** *
63641705 ATTCGCCATCTTCGATCTGCT
379 ACT-GCCAGCTTAAATCT-AT
* * *
63641726 TCACTATTG-C-T-TAGGGAGATAAGATCTG-CAATTTTCAGTCTGCTTCCTTACTACCTTAGGA
1 TC-C-ATTGCCATACAGGGAGATAAGATCCGTC-ATCTTCAGTCTGC-TCCTTACTACCTTAGGA
63641787 AGATAAGA
62 AGATAAGA
63641795 CTTGTATCTT
Statistics
Matches: 385, Mismatches: 61, Indels: 46
0.78 0.12 0.09
Matches are distributed among these distances:
396 4 0.01
397 1 0.00
398 88 0.23
399 265 0.69
400 9 0.02
401 9 0.02
402 9 0.02
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (397 bp):
TCCATTGCCATACAGGGAGATAAGATCCGTCATCTTCAGTCTGCTCCTTACTACCTTAGGAAGAT
AAGATCTGCAATTTTCAGTCTGCTTCATTGCTACCTCAGAAAGATAAGACTTGTACCTTCAACCT
GCTTTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTGCCGATACATAGA
GATAAGATTCACAGTCTTCGATCTGCTCCACTATTACTTAGGGAGATAAGATCTGCAATTTTCAG
TCTACTCCACTACACTTCAGAAAGATAAGATCTGTAATCTTCAACCTACTCCACTGCAACATCAG
AGACATAAGACTGGTAGCTAAAACCTGCTCCACTGTAACTACAGGGAGATAAGACTGCCAGCTTA
AATCTAT
Found at i:63646570 original size:21 final size:20
Alignment explanation
Indices: 63646536--63646578 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
63646526 AAATGAAATG
63646536 CAAGAAAAAGAATATTTGCT
1 CAAGAAAAAGAATATTTGCT
*
63646556 CAAGACAAAATAATATTTGCT
1 CAAGA-AAAAGAATATTTGCT
63646577 CA
1 CA
63646579 GAATAAGACA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.49, C:0.14, G:0.12, T:0.26
Consensus pattern (20 bp):
CAAGAAAAAGAATATTTGCT
Found at i:63650148 original size:19 final size:19
Alignment explanation
Indices: 63650124--63650169 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
63650114 ATGAAATTTT
* *
63650124 AATGCACATG-ATGCGATG
1 AATGCAAATGCATGAGATG
63650142 AAATGCAAATGCATGAGATG
1 -AATGCAAATGCATGAGATG
63650162 AATGCAAA
1 AATGCAAA
63650170 ACTAAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.43, C:0.13, G:0.24, T:0.20
Consensus pattern (19 bp):
AATGCAAATGCATGAGATG
Found at i:63654073 original size:6 final size:6
Alignment explanation
Indices: 63654062--63654090 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
63654052 GTTCTCCCCA
63654062 CCCTCT CCCTCT CCCTCT CCCTCT CCCTC
1 CCCTCT CCCTCT CCCTCT CCCTCT CCCTC
63654091 CCAACATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.69, G:0.00, T:0.31
Consensus pattern (6 bp):
CCCTCT
Found at i:63657765 original size:120 final size:120
Alignment explanation
Indices: 63657627--63657919 Score: 500
Period size: 120 Copynumber: 2.4 Consensus size: 120
63657617 AATTATTTTA
* * * *
63657627 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT--AATTTATATT
*
63657690 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
64 TTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
63657747 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTACTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
63657812 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
63657867 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
63657920 TAAATATGAT
Statistics
Matches: 165, Mismatches: 6, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
119 4 0.02
120 159 0.96
121 2 0.01
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:63657787 original size:15 final size:15
Alignment explanation
Indices: 63657752--63657793 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
63657742 TTAAGAATTT
*
63657752 TATTAAATTAT-ATA
1 TATTTAATTATAATA
63657766 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
63657780 TATTTAATAATAAT
1 TATTTAATTATAAT
63657794 TATGTTACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:63657902 original size:16 final size:16
Alignment explanation
Indices: 63657881--63657922 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
63657871 TTATTAAATT
*
63657881 ATATATTTTAATTATA
1 ATATATTTTAATAATA
63657897 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
63657912 AT-TATGTTTAA
1 ATATAT-TTTAA
63657923 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:63657907 original size:15 final size:15
Alignment explanation
Indices: 63657872--63657913 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
63657862 TTAAGAATTT
*
63657872 TATTAAATTAT-ATA
1 TATTTAATTATAATA
63657886 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
63657900 TATTTAATAATAAT
1 TATTTAATTATAAT
63657914 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:63658063 original size:157 final size:157
Alignment explanation
Indices: 63657856--63658172 Score: 546
Period size: 157 Copynumber: 2.0 Consensus size: 157
63657846 ATAAGAATAT
*
63657856 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
* * *
63657921 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
63657986 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
63658013 TAATTA-TAAGAATTTTATTAAATTATATATTATTAATTAAAATATATTTAATAATAATTATGTT
1 TAATTATTAAGAATTTTATTAAATTATATATT-TTAATTAAAATATATTTAATAATAATTATGTT
63658077 TAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACA
65 TAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACA
* * *
63658142 GTAATCATTTACCAAAACAATTTTATGC
130 ATAATAATTTACCAAAACAAATTTATGC
63658170 TAA
1 TAA
63658173 GGGTATTCTA
Statistics
Matches: 151, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
156 25 0.17
157 126 0.83
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:63658289 original size:44 final size:45
Alignment explanation
Indices: 63658224--63658314 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
63658214 ACCTCTATTC
* * *
63658224 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
63658268 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
63658313 CA
1 CA
63658315 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:63658316 original size:16 final size:16
Alignment explanation
Indices: 63658295--63658363 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
63658285 GATTAGCTAT
63658295 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
63658311 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
63658328 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
63658344 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
63658360 TACA
1 TACA
63658364 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:63658337 original size:33 final size:32
Alignment explanation
Indices: 63658295--63658363 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
63658285 GATTAGCTAT
63658295 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
63658328 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
63658360 TACA
1 TACA
63658364 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:63660427 original size:24 final size:25
Alignment explanation
Indices: 63660394--63660455 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
63660384 AAAAAAACAT
*
63660394 TACATAAATATATATTGAAAA-TAGA
1 TACAT-AATATATATTGAAAAGCAGA
* * *
63660419 TATATAATA-ATATTTAAAAGCATA
1 TACATAATATATATTGAAAAGCAGA
63660443 TACATAATATATA
1 TACATAATATATA
63660456 CATAATATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
23 9 0.30
24 14 0.47
25 7 0.23
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (25 bp):
TACATAATATATATTGAAAAGCAGA
Found at i:63660465 original size:9 final size:11
Alignment explanation
Indices: 63660440--63660464 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
63660430 ATTTAAAAGC
63660440 ATATACATAAT
1 ATATACATAAT
63660451 ATATACATAAT
1 ATATACATAAT
63660462 ATA
1 ATA
63660465 CGAAACAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (11 bp):
ATATACATAAT
Found at i:63660534 original size:19 final size:18
Alignment explanation
Indices: 63660497--63660537 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
63660487 ATATTAAAAC
* *
63660497 ATATACATGACATACATA
1 ATATACATGAAAAACATA
63660515 ATATACATGATAAAACATA
1 ATATACATGA-AAAACATA
63660534 ATAT
1 ATAT
63660538 GATATTTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.54, C:0.12, G:0.05, T:0.29
Consensus pattern (18 bp):
ATATACATGAAAAACATA
Found at i:63660897 original size:11 final size:12
Alignment explanation
Indices: 63660855--63660903 Score: 50
Period size: 11 Copynumber: 4.2 Consensus size: 12
63660845 AGGAACAACA
*
63660855 ATAATAATATAT
1 ATAAGAATATAT
*
63660867 ATAA-AACA-ACT
1 ATAAGAATATA-T
63660878 ATAAGAATATAT
1 ATAAGAATATAT
63660890 ATAA-AATATAT
1 ATAAGAATATAT
63660901 ATA
1 ATA
63660904 TGTAGTATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
10 1 0.03
11 18 0.56
12 12 0.38
13 1 0.03
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (12 bp):
ATAAGAATATAT
Found at i:63660903 original size:23 final size:23
Alignment explanation
Indices: 63660848--63660895 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
63660838 ATATATTAGG
* *
63660848 AACAACAATAATAATATATATAA
1 AACAACTATAAGAATATATATAA
63660871 AACAACTATAAGAATATATATAA
1 AACAACTATAAGAATATATATAA
63660894 AA
1 AA
63660896 TATATATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.65, C:0.08, G:0.02, T:0.25
Consensus pattern (23 bp):
AACAACTATAAGAATATATATAA
Found at i:63660942 original size:19 final size:19
Alignment explanation
Indices: 63660918--63660957 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
63660908 GTATTAATTA
63660918 AAAATAT-TTAAATAATAAT
1 AAAATATGTTAAA-AATAAT
63660937 AAAATATGTTAAAAATAAT
1 AAAATATGTTAAAAATAAT
63660956 AA
1 AA
63660958 TACAAGAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
AAAATATGTTAAAAATAAT
Found at i:63662055 original size:18 final size:18
Alignment explanation
Indices: 63662028--63662071 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
63662018 AGGTTAGTGG
*
63662028 GTTTTAGGTAGGTTATTT
1 GTTTTGGGTAGGTTATTT
63662046 GTTTTGGGTAGGTTATTT
1 GTTTTGGGTAGGTTATTT
63662064 GTTTTGGG
1 GTTTTGGG
63662072 CCCAAAATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.11, C:0.00, G:0.34, T:0.55
Consensus pattern (18 bp):
GTTTTGGGTAGGTTATTT
Found at i:63662851 original size:88 final size:86
Alignment explanation
Indices: 63662738--63662911 Score: 251
Period size: 88 Copynumber: 2.0 Consensus size: 86
63662728 TGTAAATTTG
* * *
63662738 GCTTGTTACCTTACTGCTTAGGGGGTTAAAGCTCATTATCTTAGATCTGTTTCCCTACTGCTTA-
1 GCTTGTTACCCTACTACTTAGGGGGTTAAAGCTCATTACCTTAGATCTGTTTCCCTACTGCTTAT
63662802 GGGTGATAAGATCTATGAACTTCA
66 GGG-G-TAAGATCTATGAA-TTCA
* * *
63662826 GCTTGTTACCCTACTACTTAGGGGGTTAAAGCTCGTTGCCTTCGATCTGTTTCCCTACTGCTTAT
1 GCTTGTTACCCTACTACTTAGGGGGTTAAAGCTCATTACCTTAGATCTGTTTCCCTACTGCTTAT
*
63662891 GGGGTAAGATCTGTGAATTCA
66 GGGGTAAGATCTATGAATTCA
63662912 CTGATTCTAG
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
86 4 0.05
87 12 0.15
88 59 0.76
89 3 0.04
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (86 bp):
GCTTGTTACCCTACTACTTAGGGGGTTAAAGCTCATTACCTTAGATCTGTTTCCCTACTGCTTAT
GGGGTAAGATCTATGAATTCA
Found at i:63662882 original size:44 final size:43
Alignment explanation
Indices: 63662749--63662895 Score: 138
Period size: 44 Copynumber: 3.3 Consensus size: 43
63662739 CTTGTTACCT
*
63662749 TACTGCTTAGGGGGTTAAAGCTCATT-ATCTTAGATCTGTTTCCC
1 TACTGCTTAGGGGGTTAAAGCTC-TTGA-CTTCGATCTGTTTCCC
* * * * *
63662793 TACTGCTTAGGGTGAT-AAGATCTATGAACTTC-AGCTTGTTACCC
1 TACTGCTTAGGGGGTTAAAGCTCT-TG-ACTTCGATC-TGTTTCCC
* *
63662837 TACTACTTAGGGGGTTAAAGCTCGTTGCCTTCGATCTGTTTCCC
1 TACTGCTTAGGGGGTTAAAGCTC-TTGACTTCGATCTGTTTCCC
*
63662881 TACTGCTTATGGGGT
1 TACTGCTTAGGGGGT
63662896 AAGATCTGTG
Statistics
Matches: 81, Mismatches: 15, Indels: 14
0.74 0.14 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.10
44 61 0.75
45 10 0.12
46 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (43 bp):
TACTGCTTAGGGGGTTAAAGCTCTTGACTTCGATCTGTTTCCC
Found at i:63674355 original size:24 final size:25
Alignment explanation
Indices: 63674322--63674383 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
63674312 TAAAAAACAT
*
63674322 TACATAAATATATATTGAAAA-TAGA
1 TACAT-AATATATATTGAAAAGCAGA
* * *
63674347 TATATAATA-ATATTTAAAAGCATA
1 TACATAATATATATTGAAAAGCAGA
63674371 TACATAATATATA
1 TACATAATATATA
63674384 CATAATATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
23 9 0.30
24 14 0.47
25 7 0.23
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (25 bp):
TACATAATATATATTGAAAAGCAGA
Found at i:63674393 original size:9 final size:11
Alignment explanation
Indices: 63674368--63674392 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
63674358 ATTTAAAAGC
63674368 ATATACATAAT
1 ATATACATAAT
63674379 ATATACATAAT
1 ATATACATAAT
63674390 ATA
1 ATA
63674393 CGAAACAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (11 bp):
ATATACATAAT
Found at i:63674462 original size:19 final size:18
Alignment explanation
Indices: 63674425--63674465 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
63674415 ATATTAAAAC
* *
63674425 ATATACATGACATACATA
1 ATATACATGAAAAACATA
63674443 ATATACATGATAAAACATA
1 ATATACATGA-AAAACATA
63674462 ATAT
1 ATAT
63674466 GATATTTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.54, C:0.12, G:0.05, T:0.29
Consensus pattern (18 bp):
ATATACATGAAAAACATA
Found at i:63674875 original size:19 final size:20
Alignment explanation
Indices: 63674838--63674879 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
63674828 TAGTATTAAT
63674838 TAAAAATGTTTAAATAATAA
1 TAAAAATGTTTAAATAATAA
63674858 TAAAATATG-TTAAA-AATAA
1 TAAAA-ATGTTTAAATAATAA
63674877 TAA
1 TAA
63674880 TACAAGAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.38
20 10 0.48
21 3 0.14
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (20 bp):
TAAAAATGTTTAAATAATAA
Found at i:63678062 original size:15 final size:15
Alignment explanation
Indices: 63678025--63678065 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
63678015 TTAATTTTTT
63678025 TATACTAATAAATAA
1 TATACTAATAAATAA
*
63678040 TA-AGTAATGAAATAA
1 TATACTAAT-AAATAA
63678055 TATA-TAATAAA
1 TATACTAATAAA
63678066 AGGAAGATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 8 0.35
15 14 0.61
16 1 0.04
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (15 bp):
TATACTAATAAATAA
Found at i:63678321 original size:13 final size:13
Alignment explanation
Indices: 63678296--63678329 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
63678286 TAAAATATAT
63678296 AATGTAT-AATAA
1 AATGTATAAATAA
*
63678308 AATTTATAAATAA
1 AATGTATAAATAA
63678321 AATGTATAA
1 AATGTATAA
63678330 TAATAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (13 bp):
AATGTATAAATAA
Found at i:63678331 original size:12 final size:12
Alignment explanation
Indices: 63678296--63678332 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
63678286 TAAAATATAT
63678296 AATGTATAATAA
1 AATGTATAATAA
*
63678308 AATTTATAAATAA
1 AATGTAT-AATAA
63678321 AATGTATAATAA
1 AATGTATAATAA
63678333 TAAAAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
AATGTATAATAA
Found at i:63678341 original size:25 final size:24
Alignment explanation
Indices: 63678288--63678355 Score: 59
Period size: 25 Copynumber: 2.8 Consensus size: 24
63678278 ATATGTAGTA
*
63678288 AAAT-ATATAATGTATAATAAAAT
1 AAATAATAAAATGTATAATAAAAT
**
63678311 TTATAAATAAAATGTATAATAATAA-
1 AAAT-AATAAAATGTATAATAA-AAT
* *
63678336 AAATAATATAATGAATAATA
1 AAATAATAAAATGTATAATA
63678356 TTTAAATAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
23 2 0.06
24 14 0.40
25 17 0.49
26 2 0.06
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (24 bp):
AAATAATAAAATGTATAATAAAAT
Found at i:63678352 original size:12 final size:12
Alignment explanation
Indices: 63678292--63678356 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
63678282 GTAGTAAAAT
63678292 ATATAATGTATA
1 ATATAATGTATA
* *
63678304 ATAAAATTTATAA
1 ATATAATGTAT-A
*
63678317 ATAAAATGTATA
1 ATATAATGTATA
**
63678329 ATAATAA-AAATA
1 AT-ATAATGTATA
*
63678341 ATATAATGAATA
1 ATATAATGTATA
63678353 ATAT
1 ATAT
63678357 TTAAATAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
11 4 0.09
12 25 0.58
13 14 0.33
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
ATATAATGTATA
Found at i:63680046 original size:44 final size:44
Alignment explanation
Indices: 63679998--63680419 Score: 476
Period size: 44 Copynumber: 9.6 Consensus size: 44
63679988 CAAACTCAAG
* *
63679998 AACGCCAAATCTATTATCCTT-GATCTGCTCTTTGACAATACAGA
1 AACGCCAAATCTGTTAT-CTTCGATCTGCTCTCTGACAATACAGA
** * * *
63680042 AACGCCAAATCTACTATTTTCAATCTGCTCTCTAACAATACAGA
1 AACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGA
* * * * *
63680086 GACGCCAAACCCGCTATTTTCGATCTGCTCTCTGACAATACA-A
1 AACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGA
* * * *
63680129 AGACGCCAAATCAGCTATCTTTGATCTGCTCTCTGACAATATAGA
1 A-ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGA
* * * * *
63680174 GACACCAGATCTGTTATCTTCGATCTGCTCTTTGATAATACAGA
1 AACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGA
* * * *
63680218 GATGCCAAATCTGTCATCTTCGATCTGCTTTCT-ATCAATACA-A
1 AACGCCAAATCTGTTATCTTCGATCTGCTCTCTGA-CAATACAGA
* * *
63680261 AGACGCCAAATCTATTATCTTCGATCTACTCTCTGTCAATACA-A
1 A-ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGA
63680305 AGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGA
1 A-ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGA
* * *
63680350 GACGCCAAATCTGTTCTCTTCGATCTGCTCTTTGACAATACAGA
1 AACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGA
*
63680394 GACGCCAAATCTGTTATCTTCGATCT
1 AACGCCAAATCTGTTATCTTCGATCT
63680420 ACATTGTCTC
Statistics
Matches: 324, Mismatches: 47, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
43 5 0.02
44 317 0.98
45 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (44 bp):
AACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGA
Found at i:63680215 original size:132 final size:131
Alignment explanation
Indices: 63679999--63680419 Score: 533
Period size: 132 Copynumber: 3.2 Consensus size: 131
63679989 AAACTCAAGA
* * ** *
63679999 ACGCCAAATCTATTATCCTT-GATCTGCTCTTTGACAATACAGAAACGCCAAATCTACTATTTTC
1 ACGCCAAATCTATTAT-CTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTC
* * * * *
63680063 AATCTGCTCTCTAACAATACAGAGACGCCAAACCCGCTATTTTCGATCTGCTCTCTGACAATACA
65 GATCTGCTCTCTGACAATACAGAGACGCCAAATCTG-TATCTTCGATCTGCTCTCTGACAATACA
63680128 AAG
129 AAG
* * * * *
63680131 ACGCCAAATC-AGCTATCTTTGATCTGCTCTCTGACAATATAGAGACACCAGATCTGTTATCTTC
1 ACGCCAAATCTA-TTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTC
* * * *
63680195 GATCTGCTCTTTGATAATACAGAGATGCCAAATCTGTCATCTTCGATCTGCTTTCT-ATCAATAC
65 GATCTGCTCTCTGACAATACAGAGACGCCAAATCTGT-ATCTTCGATCTGCTCTCTGA-CAATAC
63680259 AAAG
128 AAAG
* * *
63680263 ACGCCAAATCTATTATCTTCGATCTACTCTCTGTCAATACAAAGACGCCAAATCTGTTATCTTCG
1 ACGCCAAATCTATTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTCG
* * *
63680328 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTCTCTTCGATCTGCTCTTTGACAATACAG
66 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTG-TATCTTCGATCTGCTCTCTGACAATACAA
63680393 AG
130 AG
*
63680395 ACGCCAAATCTGTTATCTTCGATCT
1 ACGCCAAATCTATTATCTTCGATCT
63680420 ACATTGTCTC
Statistics
Matches: 248, Mismatches: 34, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
131 6 0.02
132 239 0.96
133 3 0.01
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (131 bp):
ACGCCAAATCTATTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTCG
ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTATCTTCGATCTGCTCTCTGACAATACAAA
G
Found at i:63692344 original size:15 final size:15
Alignment explanation
Indices: 63692307--63692347 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
63692297 TTTAATTTTT
63692307 TATACTAATAAATAA
1 TATACTAATAAATAA
*
63692322 TA-AGTAATGAAATAA
1 TATACTAAT-AAATAA
63692337 TATA-TAATAAA
1 TATACTAATAAA
63692348 AGGAAGATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 8 0.35
15 14 0.61
16 1 0.04
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (15 bp):
TATACTAATAAATAA
Found at i:63692451 original size:39 final size:37
Alignment explanation
Indices: 63692353--63692451 Score: 94
Period size: 39 Copynumber: 2.6 Consensus size: 37
63692343 ATAAAAGGAA
* *
63692353 GATAATATAAGGAATAATATATAATAATATATGATATGT
1 GATAA-ATAAGG-ATAATATATAATAATATATAATATAT
**
63692392 GATAAA-AAATATAATAATATAATAATATGATAACTATCAT
1 GATAAATAAGGATAAT-ATATAATAATAT-ATAA-TAT-AT
63692432 -ATAAATAAGGATAATATATA
1 GATAAATAAGGATAATATATA
63692452 TACTATTATT
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
36 5 0.10
37 14 0.29
38 4 0.08
39 18 0.37
40 8 0.16
ACGTcount: A:0.56, C:0.02, G:0.09, T:0.33
Consensus pattern (37 bp):
GATAAATAAGGATAATATATAATAATATATAATATAT
Found at i:63692902 original size:26 final size:26
Alignment explanation
Indices: 63692873--63693032 Score: 257
Period size: 26 Copynumber: 6.2 Consensus size: 26
63692863 TGGTACAAAT
63692873 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
63692899 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
63692925 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
63692951 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
63692977 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
63693003 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
63693029 TGAT
1 TGAT
63693033 GGGCATTTCA
Statistics
Matches: 123, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 123 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:63692935 original size:52 final size:52
Alignment explanation
Indices: 63692873--63693032 Score: 284
Period size: 52 Copynumber: 3.1 Consensus size: 52
63692863 TGGTACAAAT
63692873 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
*
63692925 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* * *
63692977 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
63693029 TGAT
1 TGAT
63693033 GGGCATTTCA
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 103 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:63694520 original size:26 final size:26
Alignment explanation
Indices: 63694491--63694543 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
63694481 TTTACAGTTT
63694491 TACCCCTAGGAGATAAATT-ACTGAAA
1 TACCCCTAGG-GATAAATTGACTGAAA
* *
63694517 TACCCCTAGGGTTAAATTGACTTAAA
1 TACCCCTAGGGATAAATTGACTGAAA
63694543 T
1 T
63694544 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACTGAAA
Found at i:63698977 original size:15 final size:15
Alignment explanation
Indices: 63698940--63698980 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
63698930 TTAATTTTTT
63698940 TATACTAATAAATAA
1 TATACTAATAAATAA
*
63698955 TA-AGTAATGAAATAA
1 TATACTAAT-AAATAA
63698970 TATA-TAATAAA
1 TATACTAATAAA
63698981 AGGAAGATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 8 0.35
15 14 0.61
16 1 0.04
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (15 bp):
TATACTAATAAATAA
Found at i:63699084 original size:39 final size:37
Alignment explanation
Indices: 63698986--63699084 Score: 94
Period size: 39 Copynumber: 2.6 Consensus size: 37
63698976 ATAAAAGGAA
* *
63698986 GATAATATAAGGAATAATATATAATAATATATGATATGT
1 GATAA-ATAAGG-ATAATATATAATAATATATAATATAT
**
63699025 GATAAA-AAATATAATAATATAATAATATGATAACTATCAT
1 GATAAATAAGGATAAT-ATATAATAATAT-ATAA-TAT-AT
63699065 -ATAAATAAGGATAATATATA
1 GATAAATAAGGATAATATATA
63699085 TATACTATTA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
36 5 0.10
37 14 0.29
38 4 0.08
39 18 0.37
40 8 0.16
ACGTcount: A:0.56, C:0.02, G:0.09, T:0.33
Consensus pattern (37 bp):
GATAAATAAGGATAATATATAATAATATATAATATAT
Found at i:63699238 original size:13 final size:13
Alignment explanation
Indices: 63699213--63699246 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
63699203 TAAAATATAT
63699213 AATGTAT-AATAA
1 AATGTATAAATAA
*
63699225 AATTTATAAATAA
1 AATGTATAAATAA
63699238 AATGTATAA
1 AATGTATAA
63699247 TAATAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (13 bp):
AATGTATAAATAA
Found at i:63699248 original size:12 final size:12
Alignment explanation
Indices: 63699213--63699249 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
63699203 TAAAATATAT
63699213 AATGTATAATAA
1 AATGTATAATAA
*
63699225 AATTTATAAATAA
1 AATGTAT-AATAA
63699238 AATGTATAATAA
1 AATGTATAATAA
63699250 TAAAAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
AATGTATAATAA
Found at i:63699258 original size:25 final size:24
Alignment explanation
Indices: 63699205--63699272 Score: 59
Period size: 25 Copynumber: 2.8 Consensus size: 24
63699195 ATATGTAGTA
*
63699205 AAAT-ATATAATGTATAATAAAAT
1 AAATAATAAAATGTATAATAAAAT
**
63699228 TTATAAATAAAATGTATAATAATAA-
1 AAAT-AATAAAATGTATAATAA-AAT
* *
63699253 AAATAATATAATGAATAATA
1 AAATAATAAAATGTATAATA
63699273 TTTAAATAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
23 2 0.06
24 14 0.40
25 17 0.49
26 2 0.06
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (24 bp):
AAATAATAAAATGTATAATAAAAT
Found at i:63699269 original size:12 final size:12
Alignment explanation
Indices: 63699209--63699273 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
63699199 GTAGTAAAAT
63699209 ATATAATGTATA
1 ATATAATGTATA
* *
63699221 ATAAAATTTATAA
1 ATATAATGTAT-A
*
63699234 ATAAAATGTATA
1 ATATAATGTATA
**
63699246 ATAATAA-AAATA
1 AT-ATAATGTATA
*
63699258 ATATAATGAATA
1 ATATAATGTATA
63699270 ATAT
1 ATAT
63699274 TTAAATAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
11 4 0.09
12 25 0.58
13 14 0.33
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
ATATAATGTATA
Found at i:63702489 original size:22 final size:22
Alignment explanation
Indices: 63702461--63702513 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
63702451 TAATACCAAA
63702461 CCCCATACCCCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
*
63702483 CCCCATACCTCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
*
63702505 TCCCATACC
1 CCCCATACC
63702514 GTCTGACACC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.30, C:0.53, G:0.04, T:0.13
Consensus pattern (22 bp):
CCCCATACCCCCACTACAACAG
Found at i:63702822 original size:26 final size:25
Alignment explanation
Indices: 63702785--63702841 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 25
63702775 GTGTTCTTGG
*
63702785 TTCTTTTTTATTTT-TATTTAGTTTTT
1 TTCTTTTGTATTTTCT-TTTA-TTTTT
63702811 TTCTTTTGTATTTTCTTTTATTTTT
1 TTCTTTTGTATTTTCTTTTATTTTT
63702836 TTCTTT
1 TTCTTT
63702842 CTCTTCGCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 11 0.38
26 17 0.59
27 1 0.03
ACGTcount: A:0.09, C:0.07, G:0.04, T:0.81
Consensus pattern (25 bp):
TTCTTTTGTATTTTCTTTTATTTTT
Found at i:63702824 original size:13 final size:13
Alignment explanation
Indices: 63702785--63702841 Score: 53
Period size: 13 Copynumber: 4.5 Consensus size: 13
63702775 GTGTTCTTGG
*
63702785 TTCTTTTTTATTT
1 TTCTTTTGTATTT
* * *
63702798 TTATTTAGTTTTT
1 TTCTTTTGTATTT
63702811 TTCTTTTGTA-TT
1 TTCTTTTGTATTT
* *
63702823 TTCTTTTATTTTT
1 TTCTTTTGTATTT
63702836 TTCTTT
1 TTCTTT
63702842 CTCTTCGCGA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
12 10 0.29
13 24 0.71
ACGTcount: A:0.09, C:0.07, G:0.04, T:0.81
Consensus pattern (13 bp):
TTCTTTTGTATTT
Found at i:63702824 original size:25 final size:26
Alignment explanation
Indices: 63702785--63702841 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
63702775 GTGTTCTTGG
*
63702785 TTCTTTTTTATTTTT-ATTTAGTTTTT
1 TTCTTTTGTATTTTTCATTTA-TTTTT
*
63702811 TTCTTTTGTA-TTTTCTTTTATTTTT
1 TTCTTTTGTATTTTTCATTTATTTTT
63702836 TTCTTT
1 TTCTTT
63702842 CTCTTCGCGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 15 0.54
26 13 0.46
ACGTcount: A:0.09, C:0.07, G:0.04, T:0.81
Consensus pattern (26 bp):
TTCTTTTGTATTTTTCATTTATTTTT
Found at i:63702837 original size:20 final size:18
Alignment explanation
Indices: 63702785--63702837 Score: 52
Period size: 20 Copynumber: 2.8 Consensus size: 18
63702775 GTGTTCTTGG
*
63702785 TTCTTTTTTATTTTTATT
1 TTCTTTTTTTTTTTTATT
**
63702803 TAGTTTTTTTCTTTTGTATT
1 TTCTTTTTTT-TTTT-TATT
*
63702823 TTCTTTTATTTTTTT
1 TTCTTTTTTTTTTTT
63702838 CTTTCTCTTC
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
18 8 0.30
19 8 0.30
20 11 0.41
ACGTcount: A:0.09, C:0.06, G:0.04, T:0.81
Consensus pattern (18 bp):
TTCTTTTTTTTTTTTATT
Found at i:63703774 original size:3 final size:3
Alignment explanation
Indices: 63703752--63703821 Score: 77
Period size: 3 Copynumber: 22.3 Consensus size: 3
63703742 TTTTTATTTA
* * * *
63703752 TAT TAT TGT TAG TAT CAT TAT TAT TAT TAT TAT CTCCAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -T--AT TAT TAT TAT
63703800 TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT T
63703822 CTCTTGTTAT
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
3 52 0.93
4 1 0.02
5 1 0.02
6 2 0.04
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:63703860 original size:20 final size:19
Alignment explanation
Indices: 63703823--63703874 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
63703813 ATTATTATTC
63703823 TCTTGTTATA-T-TACTAT
1 TCTTGTTATATTATACTAT
63703840 TCTTGTTATATTATCACTAT
1 TCTTGTTATATTAT-ACTAT
* *
63703860 TTTTCTTACTATTAT
1 TCTTGTTA-TATTAT
63703875 TATTACTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 10 0.34
18 1 0.03
19 1 0.03
20 11 0.38
21 6 0.21
ACGTcount: A:0.23, C:0.13, G:0.04, T:0.60
Consensus pattern (19 bp):
TCTTGTTATATTATACTAT
Found at i:63704190 original size:15 final size:15
Alignment explanation
Indices: 63704170--63704200 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
63704160 TATTATTTTC
63704170 TATTTATTACTATTA
1 TATTTATTACTATTA
63704185 TATTTATTACTATTA
1 TATTTATTACTATTA
63704200 T
1 T
63704201 TAATATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:63704296 original size:3 final size:3
Alignment explanation
Indices: 63704281--63704334 Score: 56
Period size: 3 Copynumber: 18.3 Consensus size: 3
63704271 CCCACTTAGC
* * * * *
63704281 TAT TAT TAC TAT TAT TAT TTT TAC TAT TAT AAT TAT TAT TAT TCT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
63704328 TAT TAT T
1 TAT TAT T
63704335 CTCTTACATT
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:63709147 original size:24 final size:24
Alignment explanation
Indices: 63709114--63709167 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
63709104 ACTTCACTTA
* *
63709114 AAAAAAAAGAAGAGAAAATTAATG
1 AAAAAAAAGAAAAGAAAATGAATG
* *
63709138 AAAAAGAAGAAAAGAAAATGAGTG
1 AAAAAAAAGAAAAGAAAATGAATG
63709162 AAAAAA
1 AAAAAA
63709168 GGAGAGGCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.72, C:0.00, G:0.19, T:0.09
Consensus pattern (24 bp):
AAAAAAAAGAAAAGAAAATGAATG
Found at i:63710553 original size:45 final size:44
Alignment explanation
Indices: 63710502--63710658 Score: 129
Period size: 45 Copynumber: 3.4 Consensus size: 44
63710492 TCCCTGACTA
*
63710502 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATCTGG
1 CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTG-ATCTGG
* ** * * *
63710547 CAGTGGAATAGATTGAAGATCAAATATGACAGATTTTACCTCCCTGA-CT-A
1 CAGTGGAATACATTGAAG--CCGATA--AC----TCTATCTCCCTGATCTGG
*
63710597 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGG
1 CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTG-ATCTGG
*
63710642 CAGTGGAATAGATTGAA
1 CAGTGGAATACATTGAA
63710659 TATTGCAGAT
Statistics
Matches: 85, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
42 10 0.12
43 1 0.01
44 2 0.02
45 31 0.36
46 2 0.02
47 4 0.05
48 4 0.05
49 2 0.02
50 16 0.19
51 2 0.02
52 1 0.01
53 10 0.12
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (44 bp):
CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTGATCTGG
Found at i:63710586 original size:95 final size:95
Alignment explanation
Indices: 63710468--63710658 Score: 348
Period size: 95 Copynumber: 2.0 Consensus size: 95
63710458 GCAGCGAAGC
63710468 AGATCAAAGATAGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATAGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
63710533 CTCCCTGCATCTGGCAGTGGAATAGATTGA
66 CTCCCTGCATCTGGCAGTGGAATAGATTGA
*
63710563 AGATCAAATAT-GACAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
1 AGATCAAAGATAG-CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
*
63710627 TCTCCCTGTATCTGGCAGTGGAATAGATTGA
65 TCTCCCTGCATCTGGCAGTGGAATAGATTGA
63710658 A
1 A
63710659 TATTGCAGAT
Statistics
Matches: 93, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
94 1 0.01
95 92 0.99
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (95 bp):
AGATCAAAGATAGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGCATCTGGCAGTGGAATAGATTGA
Found at i:63710720 original size:134 final size:134
Alignment explanation
Indices: 63710576--63711091 Score: 933
Period size: 134 Copynumber: 3.8 Consensus size: 134
63710566 TCAAATATGA
63710576 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTG
1 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTG
* * *
63710641 GCAGTGGAATAGATTGAATATTGCAGATCTTGCATTCCTGTATTCGGCAGCGAAGCAGATCGAAG
66 GCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAG
63710706 ATGG
131 ATGG
63710710 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTG
1 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTG
*
63710775 GCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAG
66 GCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAG
63710840 ATGG
131 ATGG
*
63710844 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCACTGTATCTG
1 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTG
*
63710909 GCAGTAGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAG
66 GCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAG
63710974 ATGG
131 ATGG
* *
63710978 CAGATTTTACCTCTCTGTGACTACAGTGGAGTACATTGAAACCGATAACTCTATCTCCCTGTATC
1 CAGATTTTACCTC-C-CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATC
*
63711043 TGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCTTGTATTAGG
64 TGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGG
63711092 TAGAAGTAGA
Statistics
Matches: 369, Mismatches: 11, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
134 275 0.75
135 1 0.00
136 93 0.25
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (134 bp):
CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTG
GCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAG
ATGG
Found at i:63710958 original size:46 final size:46
Alignment explanation
Indices: 63710631--63711091 Score: 167
Period size: 46 Copynumber: 10.2 Consensus size: 46
63710621 ACTCTATCTC
* * *
63710631 CCTGTATCT-GGCAGTGGAATAGATTGAATATTGCAGATCTTGCATT
1 CCTGTAT-TAGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTT
* * * * * * *
63710677 CCTGTATTCGGCAG-CGAAGCAGATCGAAGATGGCAGATTTTACCTC
1 CCTGTATTAGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTACCTT
* * * ** * * * *
63710723 CCTG-ACTA--CAGTGGAGTACATTGAAG-CCG-ATAACTCTATCTC
1 CCTGTATTAGGCAGTGGAATAGATTGAAGATTGCAGATCT-TACCTT
*
63710765 CCTGTATCT-GGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTT
1 CCTGTAT-TAGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTT
* * * * * * *
63710811 CCTGTATTTGGCAG-CGAAGCAGATCGAAGATGGCAGATTTTACCTC
1 CCTGTATTAGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTACCTT
* * * ** * * *
63710857 CCTG-ACTA--CAGTGGAGTACATTGAAG-CCG-ATAACTCTATC-T
1 CCTGTATTAGGCAGTGGAATAGATTGAAGATTGCAGATCT-TACCTT
* *
63710898 CACTGTATCT-GGCAGTAGAATAGATTGAAGATTGCAGATCTTGCCTT
1 C-CTGTAT-TAGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTT
* * * * *
63710945 CCTGTATTAGGCAG-CGAAGCAGATCGAAGATGGCAGATTTTACC-T
1 CCTGTATTAGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTACCTT
* * * ** * * * *
63710990 CTCTGTGACTA--CAGTGGAGTACATTGAA-ACCG-ATAACTCTATCTC
1 C-CTGT-ATTAGGCAGTGGAATAGATTGAAGATTGCAGATCT-TACCTT
*
63711035 CCTGTATCT-GGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTT
1 CCTGTAT-TAGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTT
*
63711081 CTTGTATTAGG
1 CCTGTATTAGG
63711092 TAGAAGTAGA
Statistics
Matches: 287, Mismatches: 93, Indels: 70
0.64 0.21 0.16
Matches are distributed among these distances:
41 7 0.02
42 17 0.06
43 26 0.09
44 16 0.06
45 75 0.26
46 129 0.45
47 17 0.06
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (46 bp):
CCTGTATTAGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTT
Found at i:63711307 original size:44 final size:44
Alignment explanation
Indices: 63711054--63711311 Score: 198
Period size: 44 Copynumber: 5.9 Consensus size: 44
63711044 GGCAGTGGAA
* * * * * *
63711054 TAGATTGAAGATTGCAGATCTTGCCTTCTTGTATTAGGT-AGAAG
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATT-GGTGTGAAG
* * * *
63711098 TAGACCGAAGAAAGCAGATCTTGTCTTCATGTATTGGTGTGAAG
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGTGAAG
* * * **
63711142 TAGATCAAAGATAACAGGTCCGGTCTTCCTATATTGGTAG-GAAG
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGT-GTGAAG
* * * * * * *
63711186 TGGATCGACGA-CGCAGATCTTGTCTTCCCATACTGGTGCCGAAT
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTG-TGAAG
* * * * * *
63711230 TAGATCGAAGAAAGCAGATCTTATTTTCATATATTGATGTGAAA
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGTGAAG
* *
63711274 TAGATCGAAGATAGCAGATCCTGCCTTCCTATATTGGT
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGT
63711312 AGGAAGTGGA
Statistics
Matches: 164, Mismatches: 45, Indels: 10
0.75 0.21 0.05
Matches are distributed among these distances:
42 1 0.01
43 22 0.13
44 120 0.73
45 21 0.13
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (44 bp):
TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGTGAAG
Found at i:63711366 original size:132 final size:131
Alignment explanation
Indices: 63711098--63711341 Score: 312
Period size: 132 Copynumber: 1.9 Consensus size: 131
63711088 TAGGTAGAAG
* * * * * *
63711098 TAGACCGAAGAAAGCAGATCTTGTCTTCATGTATTGGTGTGAAGTAGATCAAAGATAACAGGTCC
1 TAGATCGAAGAAAGCAGATCTTATCTTCATATATTGATGTGAAATAGATCAAAGATAACAGATCC
* * ** *
63711163 GGTCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGCCGA
66 GGCCTTCCTATATTGGTAGGAAGTGGATCGACAAAACAGATCTTATCTTCCCATACTGGTG-CGA
63711228 AT
130 AT
* * *
63711230 TAGATCGAAGAAAGCAGATCTTATTTTCATATATTGATGTGAAATAGATCGAAGATAGCAGATCC
1 TAGATCGAAGAAAGCAGATCTTATCTTCATATATTGATGTGAAATAGATCAAAGATAACAGATCC
* *
63711295 TGCCTTCCTATATTGGTAGGAAGTGGATTGA-AAAACAGA-CTCTATCT
66 GGCCTTCCTATATTGGTAGGAAGTGGATCGACAAAACAGATCT-TATCT
63711342 CCCTGTATTT
Statistics
Matches: 95, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
130 2 0.02
131 9 0.09
132 84 0.88
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (131 bp):
TAGATCGAAGAAAGCAGATCTTATCTTCATATATTGATGTGAAATAGATCAAAGATAACAGATCC
GGCCTTCCTATATTGGTAGGAAGTGGATCGACAAAACAGATCTTATCTTCCCATACTGGTGCGAA
T
Found at i:63711682 original size:229 final size:229
Alignment explanation
Indices: 63711270--63711707 Score: 734
Period size: 229 Copynumber: 1.9 Consensus size: 229
63711260 ATATTGATGT
*
63711270 GAAATAGATCGAAGATAGCAGATCCTGCCTTCCTATATTGGTAGGAAGTGGATTGAAAAACAGAC
1 GAAATAGATCGAAGATAGCAGATCCTGCCTCCCTATATTGGTAGGAAGTGGATTGAAAAACAGAC
* * *
63711335 TCTATCTCCCTGTATTTAGCAGTGGAATAGATTACAGGTCGAAGACGGCAGACTTTACCTCCCTG
66 TCTATCTCCCTGTATTTAGCAGTGGAACAGATTACAGATCAAAGACGGCAGACTTTACCTCCCTG
* * *
63711400 ACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTATTGGGCAGTGGAATAGATTGA
131 ACTACAATGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTGGGCAGTGGAATAGATTGA
63711465 AGATTGCAGATCTTGCCTTCCTGTATTCGGCAAC
196 AGATTGCAGATCTTGCCTTCCTGTATTCGGCAAC
63711499 GAAATAGATCGAAGATAGCAGATCCTGCCTCCCTATATTGGTAGGAAGTGGATTGAAAAACAGAC
1 GAAATAGATCGAAGATAGCAGATCCTGCCTCCCTATATTGGTAGGAAGTGGATTGAAAAACAGAC
* * *
63711564 TCTATCTCCCTGTATTTGGCAGTGGAACAGATTGA-AGATCAAAGATGGCAGATTTTACCTCCCT
66 TCTATCTCCCTGTATTTAGCAGTGGAACAGATT-ACAGATCAAAGACGGCAGACTTTACCTCCCT
* *
63711628 GACTACAATGGAGTACATTGAAGCCGATGACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTG
130 GACTACAATGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTGGGCAGTGGAATAGATTG
* *
63711693 AAGATTTCAGGTCTT
195 AAGATTGCAGATCTT
63711708 ATCTCCCTAA
Statistics
Matches: 194, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
229 193 0.99
230 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (229 bp):
GAAATAGATCGAAGATAGCAGATCCTGCCTCCCTATATTGGTAGGAAGTGGATTGAAAAACAGAC
TCTATCTCCCTGTATTTAGCAGTGGAACAGATTACAGATCAAAGACGGCAGACTTTACCTCCCTG
ACTACAATGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTGGGCAGTGGAATAGATTGA
AGATTGCAGATCTTGCCTTCCTGTATTCGGCAAC
Found at i:63712068 original size:22 final size:22
Alignment explanation
Indices: 63712040--63712092 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
63712030 TAATACCAAA
63712040 CCCCATACCCCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
*
63712062 CCCCATACCTCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
*
63712084 TCCCATACC
1 CCCCATACC
63712093 GTCTGACACC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.30, C:0.53, G:0.04, T:0.13
Consensus pattern (22 bp):
CCCCATACCCCCACTACAACAG
Found at i:63712401 original size:26 final size:25
Alignment explanation
Indices: 63712367--63712420 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 25
63712357 TCTTGGTTCT
*
63712367 TTTTTTATTTT-TATTTAGTTTTTTTC
1 TTTTGTATTTTCT-TTTA-TTTTTTTC
63712393 TTTTGTATTTTCTTTTATTTTTTTC
1 TTTTGTATTTTCTTTTATTTTTTTC
63712418 TTT
1 TTT
63712421 CTCTTCGCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 11 0.42
26 14 0.54
27 1 0.04
ACGTcount: A:0.09, C:0.06, G:0.04, T:0.81
Consensus pattern (25 bp):
TTTTGTATTTTCTTTTATTTTTTTC
Found at i:63712415 original size:12 final size:13
Alignment explanation
Indices: 63712363--63712420 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
63712353 GTGTTCTTGG
63712363 TTCTTTT-TTTATT
1 TTCTTTTATTT-TT
63712376 TT-TATTTAGTTTTT
1 TTCT-TTTA-TTTTT
* *
63712390 TTCTTTT-GTATT
1 TTCTTTTATTTTT
63712402 TTCTTTTATTTTT
1 TTCTTTTATTTTT
63712415 TTCTTT
1 TTCTTT
63712421 CTCTTCGCGA
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
12 11 0.31
13 14 0.39
14 7 0.19
15 4 0.11
ACGTcount: A:0.09, C:0.07, G:0.03, T:0.81
Consensus pattern (13 bp):
TTCTTTTATTTTT
Found at i:63712416 original size:20 final size:19
Alignment explanation
Indices: 63712363--63712408 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
63712353 GTGTTCTTGG
63712363 TTCTTTTTTTATTTTTATT
1 TTCTTTTTTTATTTTTATT
** *
63712382 TAGTTTTTTTCTTTTGTATT
1 TTCTTTTTTTATTTT-TATT
63712402 TTCTTTT
1 TTCTTTT
63712409 ATTTTTTTCT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.09, C:0.07, G:0.04, T:0.80
Consensus pattern (19 bp):
TTCTTTTTTTATTTTTATT
Found at i:63713353 original size:3 final size:3
Alignment explanation
Indices: 63713331--63713397 Score: 71
Period size: 3 Copynumber: 21.3 Consensus size: 3
63713321 TTTTTATTTA
* * * *
63713331 TAT TAT TGT TAG TAT CAT TAT TAT TAT TAT TAT CTCCAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -T--AT TAT TAT TAT
63713379 TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT T
63713398 CTCTTGTTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
3 49 0.92
4 1 0.02
5 1 0.02
6 2 0.04
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:63713436 original size:20 final size:19
Alignment explanation
Indices: 63713399--63713450 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
63713389 ATTATTATTC
63713399 TCTTGTTATA-T-TACTAT
1 TCTTGTTATATTATACTAT
63713416 TCTTGTTATATTATCACTAT
1 TCTTGTTATATTAT-ACTAT
* *
63713436 TTTTCTTACTATTAT
1 TCTTGTTA-TATTAT
63713451 TATTACTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 10 0.34
18 1 0.03
19 1 0.03
20 11 0.38
21 6 0.21
ACGTcount: A:0.23, C:0.13, G:0.04, T:0.60
Consensus pattern (19 bp):
TCTTGTTATATTATACTAT
Found at i:63713766 original size:15 final size:15
Alignment explanation
Indices: 63713746--63713776 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
63713736 TATTATTTTC
63713746 TATTTATTACTATTA
1 TATTTATTACTATTA
63713761 TATTTATTACTATTA
1 TATTTATTACTATTA
63713776 T
1 T
63713777 TAATTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:63713872 original size:3 final size:3
Alignment explanation
Indices: 63713857--63713910 Score: 56
Period size: 3 Copynumber: 18.3 Consensus size: 3
63713847 CCCACTTAGC
* * * * *
63713857 TAT TAT TAC TAT TAT TAT TTT TAC TAT TAT AAT TAT TAT TAT TCT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
63713904 TAT TAT T
1 TAT TAT T
63713911 CTCTTACATT
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:63715222 original size:55 final size:55
Alignment explanation
Indices: 63715160--63715274 Score: 230
Period size: 55 Copynumber: 2.1 Consensus size: 55
63715150 ATGGTTATTG
63715160 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
1 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
63715215 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
1 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
63715270 CCGAC
1 CCGAC
63715275 ATGGCAATTT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 60 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (55 bp):
CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
Found at i:63716647 original size:43 final size:43
Alignment explanation
Indices: 63716600--63716686 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
63716590 AAGAAAGATA
63716600 CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
1 CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
63716643 CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
1 CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
63716686 C
1 C
63716687 CAACCTTAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.46, C:0.17, G:0.09, T:0.28
Consensus pattern (43 bp):
CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
Found at i:63716696 original size:38 final size:39
Alignment explanation
Indices: 63716611--63716696 Score: 111
Period size: 43 Copynumber: 2.1 Consensus size: 39
63716601 AAAGTTTGCG
*
63716611 TTAAATAATATAATTAGAACCAAAATACCCATCAAAGTTTGCG
1 TTAAATAATATAATTAGAACCAAAATACCCATCAAA---T-CC
*
63716654 TTAAATAATATAATTAGAACCAAAATACCCATCCAA-CC
1 TTAAATAATATAATTAGAACCAAAATACCCATCAAATCC
63716692 TTAAA
1 TTAAA
63716697 GGTTGGCTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
38 6 0.15
43 35 0.85
ACGTcount: A:0.49, C:0.19, G:0.06, T:0.27
Consensus pattern (39 bp):
TTAAATAATATAATTAGAACCAAAATACCCATCAAATCC
Found at i:63717607 original size:37 final size:37
Alignment explanation
Indices: 63717548--63717619 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 37
63717538 TTCTCAACAA
*
63717548 ATATTCAGAAGTAGCTTCCTTTGAGTATCAATTTCTC
1 ATATTCAGAAGTAACTTCCTTTGAGTATCAATTTCTC
*
63717585 ATATTCAGAAGTAAC-TCACTTTGAGTATTAATTTC
1 ATATTCAGAAGTAACTTC-CTTTGAGTATCAATTTC
63717620 CCATTCATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 2 0.06
37 30 0.94
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (37 bp):
ATATTCAGAAGTAACTTCCTTTGAGTATCAATTTCTC
Found at i:63718130 original size:11 final size:12
Alignment explanation
Indices: 63718104--63718128 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63718094 ATTGATGTAA
63718104 TTAAAAAATATT
1 TTAAAAAATATT
63718116 TTAAAAAATATT
1 TTAAAAAATATT
63718128 T
1 T
63718129 AACTAATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TTAAAAAATATT
Found at i:63719699 original size:25 final size:25
Alignment explanation
Indices: 63719665--63719716 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
63719655 CAGGTTCGAG
63719665 AGTCAGTTACGTACGAGGAAGGGTT
1 AGTCAGTTACGTACGAGGAAGGGTT
63719690 AGTCAGTTACGTACGAGGAAGGGTT
1 AGTCAGTTACGTACGAGGAAGGGTT
63719715 AG
1 AG
63719717 CACCCTCGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.29, C:0.12, G:0.37, T:0.23
Consensus pattern (25 bp):
AGTCAGTTACGTACGAGGAAGGGTT
Found at i:63720524 original size:16 final size:16
Alignment explanation
Indices: 63720496--63720533 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
63720486 ATAAGGAAAT
*
63720496 TATAAA-CATATAAAA
1 TATAAATCAAATAAAA
63720511 TATAAATCAAATAAAA
1 TATAAATCAAATAAAA
*
63720527 TAAAAAT
1 TATAAAT
63720534 AAAGATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (16 bp):
TATAAATCAAATAAAA
Found at i:63720820 original size:21 final size:20
Alignment explanation
Indices: 63720795--63720863 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 20
63720785 TAATAAAATT
63720795 TATAAACAAAATATATAATGA
1 TATAAACAAAATATATAAT-A
*
63720816 TATAAACAATATGATAGATAATA
1 TATAAACAA-A--ATATATAATA
*
63720839 TATAAA-ATAATATAT-ATA
1 TATAAACAAAATATATAATA
63720857 TAATAAA
1 T-ATAAA
63720864 ATGTATGTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
18 4 0.10
19 10 0.24
21 10 0.24
22 2 0.05
23 7 0.17
24 8 0.20
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (20 bp):
TATAAACAAAATATATAATA
Found at i:63720894 original size:10 final size:10
Alignment explanation
Indices: 63720804--63720914 Score: 69
Period size: 10 Copynumber: 11.6 Consensus size: 10
63720794 TTATAAACAA
63720804 AATATATAAT
1 AATATATAAT
* *
63720814 GATATA-AAC
1 AATATATAAT
63720823 AATATGATAGAT
1 AATAT-ATA-AT
63720835 AATATATAA-
1 AATATATAAT
63720844 AATA-AT-AT
1 AATATATAAT
63720852 -ATATATAAT
1 AATATATAAT
* *
63720861 AAAATGT-AT
1 AATATATAAT
*
63720870 -GTA-AT-AT
1 AATATATAAT
63720877 AATATATAAT
1 AATATATAAT
*
63720887 AATGTATAAT
1 AATATATAAT
63720897 AATATAATAAAT
1 AATAT-AT-AAT
63720909 AATATA
1 AATATA
63720915 CAGATATAAA
Statistics
Matches: 77, Mismatches: 12, Indels: 23
0.69 0.11 0.21
Matches are distributed among these distances:
7 7 0.09
8 7 0.09
9 16 0.21
10 26 0.34
11 7 0.09
12 14 0.18
ACGTcount: A:0.58, C:0.01, G:0.05, T:0.36
Consensus pattern (10 bp):
AATATATAAT
Found at i:63720909 original size:12 final size:12
Alignment explanation
Indices: 63720804--63720914 Score: 50
Period size: 12 Copynumber: 9.1 Consensus size: 12
63720794 TTATAAACAA
*
63720804 AATATATAATGAT
1 AATAAATAAT-AT
*
63720817 -ATAAACAATAT
1 AATAAATAATAT
* *
63720828 GATAGATAATAT
1 AATAAATAATAT
63720840 -ATAAAATAATAT
1 AAT-AAATAATAT
*
63720852 ATATATAATAAAAT
1 A-ATA-AATAATAT
* **
63720866 -GTATGTAATAT
1 AATAAATAATAT
*
63720877 AATATATAATA-
1 AATAAATAATAT
*
63720888 ATGTATAATAATAT
1 A-ATA-AATAATAT
63720902 AATAAATAATAT
1 AATAAATAATAT
63720914 A
1 A
63720915 CAGATATAAA
Statistics
Matches: 74, Mismatches: 15, Indels: 19
0.69 0.14 0.18
Matches are distributed among these distances:
11 10 0.14
12 45 0.61
13 9 0.12
14 10 0.14
ACGTcount: A:0.58, C:0.01, G:0.05, T:0.36
Consensus pattern (12 bp):
AATAAATAATAT
Found at i:63721545 original size:17 final size:17
Alignment explanation
Indices: 63721523--63721580 Score: 107
Period size: 17 Copynumber: 3.4 Consensus size: 17
63721513 CACTAGGCTA
63721523 CACGCGCACATGCGCTG
1 CACGCGCACATGCGCTG
63721540 CACGCGCACATGCGCTG
1 CACGCGCACATGCGCTG
*
63721557 CACGCGCACATGCGCCG
1 CACGCGCACATGCGCTG
63721574 CACGCGC
1 CACGCGC
63721581 TGTCGTACAG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
17 40 1.00
ACGTcount: A:0.17, C:0.45, G:0.29, T:0.09
Consensus pattern (17 bp):
CACGCGCACATGCGCTG
Found at i:63723984 original size:27 final size:28
Alignment explanation
Indices: 63723900--63723997 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
63723890 CATGAGATTG
* * * *
63723900 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
63723929 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
63723957 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
63723984 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
63723998 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:63724008 original size:27 final size:27
Alignment explanation
Indices: 63723928--63724010 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
63723918 TAAATTGTAC
* *
63723928 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
63723956 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
63723983 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
63724010 A
1 A
63724011 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:63724011 original size:29 final size:27
Alignment explanation
Indices: 63723900--63724011 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
63723890 CATGAGATTG
** * *
63723900 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
63723929 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
63723957 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
63723984 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
63724012 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:63737804 original size:97 final size:98
Alignment explanation
Indices: 63737633--63737816 Score: 316
Period size: 97 Copynumber: 1.9 Consensus size: 98
63737623 GAGGTCATGT
* * *
63737633 GTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCATGTGTAGTACTATGTGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGC
*
63737698 AGGCTACTATGCGTACCTGATAACATCGATCAC
66 AGGCTACTATGCGTACCAGATAACATCGATCAC
*
63737731 GTGT-GTACTAAGTGCAGGCTATTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGC
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGC
63737795 AGGCTACTATGCGTACCAGATA
66 AGGCTACTATGCGTACCAGATA
63737817 GCTTTGGCCA
Statistics
Matches: 81, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
97 77 0.95
98 4 0.05
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (98 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGC
AGGCTACTATGCGTACCAGATAACATCGATCAC
Found at i:63737811 original size:49 final size:49
Alignment explanation
Indices: 63737632--63737816 Score: 214
Period size: 49 Copynumber: 3.8 Consensus size: 49
63737622 TGAGGTCATG
* *
63737632 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTGGTCGCA
* * * * **
63737681 TGTGTAGTACTATGTGTAGGCTACTATGCGTACCTGATAA--CATCGATCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTGGTCG--CA
* * *
63737730 CGTGT-GTACTAAGTGCAGGCTATTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTGGTCGCA
* *
63737778 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATA
63737817 GCTTTGGCCA
Statistics
Matches: 109, Mismatches: 22, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
47 3 0.03
48 34 0.31
49 69 0.63
50 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTGGTCGCA
Found at i:63739309 original size:46 final size:45
Alignment explanation
Indices: 63739212--63739374 Score: 154
Period size: 46 Copynumber: 3.6 Consensus size: 45
63739202 GTGTTGATTC
* * * *
63739212 CATGTCCTAGACATGGTCTTACACTGA-CACATCTAGTAGCTGATG
1 CATGTCCCAGACATGGTCTTACACTGATTACATCTCG-AGCCGATG
63739257 CATGTCCCAGACAT-GTCTTACACTGGATTACATCTCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACT-GATTACATCTCGA-GCCGATG
* * * * *
63739303 CGTGTCCCAGACAT-GTTTTACATTAGCTCT-CATCTCAATGCCGATG
1 CATGTCCCAGACATGGTCTTACACT-GAT-TACATCTCGA-GCCGATG
63739349 CCATGTCCCAGACATGGTCTTACACT
1 -CATGTCCCAGACATGGTCTTACACT
63739375 AGTCCACAAT
Statistics
Matches: 98, Mismatches: 14, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
44 10 0.10
45 16 0.16
46 50 0.51
47 14 0.14
48 8 0.08
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGGTCTTACACTGATTACATCTCGAGCCGATG
Found at i:63757444 original size:23 final size:23
Alignment explanation
Indices: 63757385--63757438 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
63757375 GTTAATGCCT
63757385 CACACGCCCATGTGGAGACAATG
1 CACACGCCCATGTGGAGACAATG
* *
63757408 CAAACGCCCGTGTGGAGACAATG
1 CACACGCCCATGTGGAGACAATG
63757431 CACACGCC
1 CACACGCC
63757439 TTTGTGCATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.30, C:0.33, G:0.26, T:0.11
Consensus pattern (23 bp):
CACACGCCCATGTGGAGACAATG
Found at i:63768910 original size:145 final size:146
Alignment explanation
Indices: 63768621--63768886 Score: 335
Period size: 145 Copynumber: 1.8 Consensus size: 146
63768611 TAGATTGAGT
* *
63768621 ATTAGCGGTGTTTTTAGAGAAGCGCCGCTATAGGTCCACCTATAGCGGTGCTTTATTAAAAACGC
1 ATTAGCGGTGTTTTTAGAGAAGCGCCGCTATAGATCCACCTATAGCGGCGCTTTATTAAAAACGC
* * ** *
63768686 CGCTAAAAGATTAATGTGAACGACGTCGTATTATGTAAGCTTCAGTTCATTAGCGGCGCTTCTCT
66 CGCTAAAAGATTAAAGAGAACGACGTCGTATTATGTAAGCACCAATTCATTAGCGGCGCTTCTCT
63768751 AAAAACACCGCTAAAG
131 AAAAACACCGCTAAAG
* * *
63768767 ATTAGCGG-GTTTTTAGAGAAGCGCCGCTATAGATCGACCTATCGCGGCG-TTT-TTACATAAGC
1 ATTAGCGGTGTTTTTAGAGAAGCGCCGCTATAGATCCACCTATAGCGGCGCTTTATTA-A-AAAC
* * * *
63768829 GTCGCTAAAAGATTAAAGAGCACGACGTCGTTTTCT-TAA-CAACCAATTGCATTAGCGG
64 GCCGCTAAAAGATTAAAGAGAACGACGTCGTATTATGTAAGC-ACCAATT-CATTAGCGG
63768887 TGTTTTTTAG
Statistics
Matches: 102, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
143 4 0.04
144 11 0.11
145 79 0.77
146 8 0.08
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (146 bp):
ATTAGCGGTGTTTTTAGAGAAGCGCCGCTATAGATCCACCTATAGCGGCGCTTTATTAAAAACGC
CGCTAAAAGATTAAAGAGAACGACGTCGTATTATGTAAGCACCAATTCATTAGCGGCGCTTCTCT
AAAAACACCGCTAAAG
Done.