Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 191 of 344
Found at i:63770246 original size:186 final size:186
Alignment explanation
Indices: 63769922--63770259 Score: 453
Period size: 186 Copynumber: 1.8 Consensus size: 186
63769912 TACACCCTTG
* * ** * *
63769922 TTATTAGTGGCGCTTCCATAAACGCTGCAAAAGGTGAGAATTACCGGCGTTTTATCCAGAAACGC
1 TTATTAGTGGAGCTTCAATAAACGCCACAAAAGGTGAGAAATACCGGCATTTTATCCAGAAACGC
* ** * *
63769987 CACAAAAATCTGTCAACAGATTGCAAAATGGCATCATTATTACCTTGTTATTAGTGGCGCTTTAT
66 CACAAAAATCTATCAACAGATTGCAAAACAGCATCATTAGTACATTGTTATTAGTGGCGCTTTAT
*
63770052 ATAAAAACGCCACAAAATATTTAAAGTGATTTCAAAATGTCCTCGTTTTGTAGTCTT
131 ACAAAAACGCCAC-AAATATTTAAAGTGATTTCAAAATGTCCTCGTTTTGTAGTCTT
* * * * * *
63770109 TTATTAGTGGAGCTTTAATAAACGCCACAAAAGGTGTGAAATGCTGGCATTTTCTCTAGAAACGC
1 TTATTAGTGGAGCTTCAATAAACGCCACAAAAGGTGAGAAATACCGGCATTTTATCCAGAAACGC
* * * * *
63770174 CAC-AAAATCTATTAATAGATTGCAAAACAGCGTCGTTAGTACATTGTTATTAGTGGCGCTTTCT
66 CACAAAAATCTATCAACAGATTGCAAAACAGCATCATTAGTACATTGTTATTAGTGGCGCTTTAT
63770238 ACAAAAACGCCACAAATATTTA
131 ACAAAAACGCCACAAATATTTA
63770260 TTAATAGATT
Statistics
Matches: 128, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
185 9 0.07
186 63 0.49
187 56 0.44
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (186 bp):
TTATTAGTGGAGCTTCAATAAACGCCACAAAAGGTGAGAAATACCGGCATTTTATCCAGAAACGC
CACAAAAATCTATCAACAGATTGCAAAACAGCATCATTAGTACATTGTTATTAGTGGCGCTTTAT
ACAAAAACGCCACAAATATTTAAAGTGATTTCAAAATGTCCTCGTTTTGTAGTCTT
Found at i:63774463 original size:241 final size:241
Alignment explanation
Indices: 63774040--63775008 Score: 1859
Period size: 241 Copynumber: 4.0 Consensus size: 241
63774030 ATGAATTAAT
*
63774040 TTTATTACCATGTACCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
63774105 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACTTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACTTGACGGGTTGCCTTATATCGAG
* *
63774170 TTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAATC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
63774235 AAAAAGAGTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGAGTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
63774281 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
63774346 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACTTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACTTGACGGGTTGCCTTATATCGAG
63774411 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
63774476 AAAAAGAGTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGAGTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
63774522 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
63774587 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACTTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACTTGACGGGTTGCCTTATATCGAG
63774652 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
63774717 AAAAAGAGTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGAGTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
63774763 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
63774828 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAAGC-TGACGGGTTGCCTTATATCGA
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAA-CTTGACGGGTTGCCTTATATCGA
*
63774892 GCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATAAATCTTAAAAAATT
130 GCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATT
* * *
63774957 CAAAAAGACTTGGAAAAAGTTCTATCGATCTCATTTACTATTGAATA
195 CAAAAAGAGTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
63775004 TTTAT
1 TTTAT
63775009 ATAACCTTAA
Statistics
Matches: 720, Mismatches: 7, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
241 719 1.00
242 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.33
Consensus pattern (241 bp):
TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACTTGACGGGTTGCCTTATATCGAG
CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
AAAAAGAGTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
Found at i:63775211 original size:9 final size:9
Alignment explanation
Indices: 63775188--63775354 Score: 154
Period size: 9 Copynumber: 17.6 Consensus size: 9
63775178 ATTGATCATT
*
63775188 ACTTAAATA
1 ACTTACATA
*
63775197 AATTACATA
1 ACTTACATA
63775206 ACTTACATA
1 ACTTACATA
* *
63775215 ACTCATATA
1 ACTTACATA
63775224 ACTTACATA
1 ACTTACATA
*
63775233 ATTTACATAACA
1 ACTTACAT---A
63775245 ACTTACATA
1 ACTTACATA
*
63775254 ACTCACATA
1 ACTTACATA
63775263 ACTTACATA
1 ACTTACATA
*
63775272 ATTTACATAACA
1 ACTTACAT---A
63775284 ACTTACATA
1 ACTTACATA
*
63775293 ACTCACATA
1 ACTTACATA
63775302 ACTTACATA
1 ACTTACATA
*
63775311 ATTTACATA
1 ACTTACATA
*
63775320 ACTCACATA
1 ACTTACATA
*
63775329 ACGTACATAACA
1 ACTTACAT---A
63775341 ACTTACATA
1 ACTTACATA
63775350 ACTTA
1 ACTTA
63775355 ACTAATACAT
Statistics
Matches: 128, Mismatches: 21, Indels: 18
0.77 0.13 0.11
Matches are distributed among these distances:
9 104 0.81
12 24 0.19
ACGTcount: A:0.47, C:0.22, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:63775257 original size:39 final size:39
Alignment explanation
Indices: 63775205--63775321 Score: 225
Period size: 39 Copynumber: 3.0 Consensus size: 39
63775195 TAAATTACAT
*
63775205 AACTTACATAACTCATATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
63775244 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
63775283 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
63775322 TCACATAACG
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:63775278 original size:48 final size:47
Alignment explanation
Indices: 63775199--63775354 Score: 186
Period size: 48 Copynumber: 3.3 Consensus size: 47
63775189 CTTAAATAAA
* * *
63775199 TTACATAACTTACATAACTCATATAACTTACATAATTTACATAACAAC
1 TTACATAACTTACATAACTTACATAACTTACATAA-CTACATAACAAC
* * * * *
63775247 TTACATAACTCACATAACTTACATAATTTACATAACAACTTACATAAC
1 TTACATAACTTACATAACTTACATAACTTACATAACTACATA-ACAAC
* * *
63775295 TCACATAACTTACATAATTTACATAACTCACATAACGTACATAACAAC
1 TTACATAACTTACATAACTTACATAACTTACATAAC-TACATAACAAC
63775343 TTACATAACTTA
1 TTACATAACTTA
63775355 ACTAATACAT
Statistics
Matches: 89, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
47 4 0.04
48 81 0.91
49 4 0.04
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.31
Consensus pattern (47 bp):
TTACATAACTTACATAACTTACATAACTTACATAACTACATAACAAC
Found at i:63775340 original size:57 final size:57
Alignment explanation
Indices: 63775188--63775352 Score: 192
Period size: 57 Copynumber: 2.9 Consensus size: 57
63775178 ATTGATCATT
* * * *
63775188 ACTTAAATAAATTACATAACTTACATAACT-CAT-ATAACTTACATAATTTACATAACA
1 ACTTACATAAATTACATAACTTACATAACTACATAACAACTTACATAACTCACAT-A-A
* * *
63775245 ACTTACATAACTCACATAACTTACATAATTTACATAACAACTTACATAACTCACAT-A
1 ACTTACATAAATTACATAACTTACATAA-CTACATAACAACTTACATAACTCACATAA
* *
63775302 ACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACTTACATAAATTACATAACTTACATAAC-TACATAACAACTTACATAACT
63775353 TAACTAATAC
Statistics
Matches: 93, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
57 72 0.77
58 1 0.01
59 3 0.03
60 17 0.18
ACGTcount: A:0.47, C:0.22, G:0.01, T:0.31
Consensus pattern (57 bp):
ACTTACATAAATTACATAACTTACATAACTACATAACAACTTACATAACTCACATAA
Found at i:63775350 original size:39 final size:37
Alignment explanation
Indices: 63775188--63775339 Score: 202
Period size: 39 Copynumber: 4.1 Consensus size: 37
63775178 ATTGATCATT
* * *
63775188 ACTTAAATAAATTACAT-AACTTACATAACTCATATA
1 ACTTACATAATTTACATAAACTTACATAACTCACATA
63775224 ACTTACATAATTTACATAACAACTTACATAACTCACATA
1 ACTTACATAATTTACAT-A-AACTTACATAACTCACATA
63775263 ACTTACATAATTTACATAACAACTTACATAACTCACATA
1 ACTTACATAATTTACAT-A-AACTTACATAACTCACATA
*
63775302 ACTTACATAATTTACAT-AACTCACATAACGT-ACATA
1 ACTTACATAATTTACATAAACTTACATAAC-TCACATA
63775338 AC
1 AC
63775340 AACTTACATA
Statistics
Matches: 108, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
36 33 0.31
37 1 0.01
39 74 0.69
ACGTcount: A:0.47, C:0.22, G:0.01, T:0.31
Consensus pattern (37 bp):
ACTTACATAATTTACATAAACTTACATAACTCACATA
Found at i:63779903 original size:21 final size:21
Alignment explanation
Indices: 63779877--63779916 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
63779867 ACTTAGAGCG
*
63779877 GAGGCAGCAGCGCGGGAGGGT
1 GAGGCAGCAGCGAGGGAGGGT
63779898 GAGGCAGCAGCGAGGGAGG
1 GAGGCAGCAGCGAGGGAGG
63779917 CGGAGCAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.17, G:0.57, T:0.03
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGGT
Found at i:63781630 original size:55 final size:55
Alignment explanation
Indices: 63781557--63781678 Score: 156
Period size: 55 Copynumber: 2.2 Consensus size: 55
63781547 CATGCTAAAA
* * *
63781557 CAACACAGGCGTTCGACACACCCGTGTCTAG-AACCTGTGGCCGAACCTGTCAAAT
1 CAACACGGGCGTTCGACACACCCGTGCCAAGCAACC-GTGGCCGAACCTGTCAAAT
* * * *
63781612 CAGCACGGGCGTTCGACACGCCCGTGCCAAGCAACCGTGGTCGAACCTGTTAAAT
1 CAACACGGGCGTTCGACACACCCGTGCCAAGCAACCGTGGCCGAACCTGTCAAAT
*
63781667 TAACACGGGCGT
1 CAACACGGGCGT
63781679 GGGCCTACAT
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
55 53 0.93
56 4 0.07
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.17
Consensus pattern (55 bp):
CAACACGGGCGTTCGACACACCCGTGCCAAGCAACCGTGGCCGAACCTGTCAAAT
Found at i:63792883 original size:47 final size:47
Alignment explanation
Indices: 63792814--63793016 Score: 286
Period size: 47 Copynumber: 4.3 Consensus size: 47
63792804 AGCTTAAGAT
63792814 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
*
63792861 CGAATAGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
** *
63792908 CGAATGGCCAATGTGATGAATGTGAAAGTGCATACATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
** * *
63792955 CGAATGGTTAATGTGAT-ATATGTGTAA--GTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGTGTGTATATGTGATAAGGC
*
63793000 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
63793017 AAAGTGTGCA
Statistics
Matches: 139, Mismatches: 15, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
45 22 0.16
46 6 0.04
47 111 0.80
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
Found at i:63793169 original size:40 final size:39
Alignment explanation
Indices: 63793088--63793171 Score: 114
Period size: 40 Copynumber: 2.1 Consensus size: 39
63793078 AATGAATTGC
* * * *
63793088 GCTGAGATTGTATCCGGGTTAGAGACCCGCTGGCTTCAT
1 GCTGGGATTGTATCCGGGTTAAAGACCCGCAGGCTTAAT
*
63793127 GCTGGGATTGTATCCGGGTTTAAAGTCCCGCAGGCTTAAT
1 GCTGGGATTGTATCCGGG-TTAAAGACCCGCAGGCTTAAT
63793167 GCTGG
1 GCTGG
63793172 TGAATTAAGT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 17 0.44
40 22 0.56
ACGTcount: A:0.18, C:0.21, G:0.32, T:0.29
Consensus pattern (39 bp):
GCTGGGATTGTATCCGGGTTAAAGACCCGCAGGCTTAAT
Found at i:63807561 original size:27 final size:27
Alignment explanation
Indices: 63807522--63807583 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
63807512 AGCAATCTAA
*
63807522 TCAGAGTAAGCCATA-AGGGCGATCCAT
1 TCAGAGTAAGCCACATA-GGCGATCCAT
* *
63807549 TCAGAGTATGCCACATAGGTGATCCAT
1 TCAGAGTAAGCCACATAGGCGATCCAT
63807576 TCAGAGTA
1 TCAGAGTA
63807584 CACCATGAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (27 bp):
TCAGAGTAAGCCACATAGGCGATCCAT
Found at i:63808959 original size:21 final size:21
Alignment explanation
Indices: 63808920--63808959 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
63808910 TGCATTAGAG
* *
63808920 TCTCAAGACCTCTAGAACATT
1 TCTCAAGACATCTACAACATT
*
63808941 TCTCAAGACATTTACAACA
1 TCTCAAGACATCTACAACA
63808960 AAATTGACCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.28, G:0.07, T:0.28
Consensus pattern (21 bp):
TCTCAAGACATCTACAACATT
Found at i:63812492 original size:52 final size:53
Alignment explanation
Indices: 63812376--63812513 Score: 165
Period size: 52 Copynumber: 2.6 Consensus size: 53
63812366 ACACCACACC
* * *
63812376 CCGATGCCATATCCCAGATATAGTCTTATACGGAATCACATTATCATGTCACA
1 CCGATGCCATAGCCCAGATATGGTCTTATACGGAATCACATTATCATATCACA
* * **
63812429 CCGATGCCATAGCCCAGCTATGGTCTTATATGGGAA-CACA-TATCATATTGCA
1 CCGATGCCATAGCCCAGATATGGTCTTATA-CGGAATCACATTATCATATCACA
*
63812481 CCGATGCCATAGCCCA-ATTATGGTCTTAAACGG
1 CCGATGCCATAGCCCAGA-TATGGTCTTATACGG
63812514 GTGCACATAT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
51 2 0.03
52 36 0.49
53 31 0.42
54 4 0.05
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (53 bp):
CCGATGCCATAGCCCAGATATGGTCTTATACGGAATCACATTATCATATCACA
Found at i:63822402 original size:33 final size:33
Alignment explanation
Indices: 63822365--63822432 Score: 77
Period size: 33 Copynumber: 2.1 Consensus size: 33
63822355 TTCACATTTT
63822365 AACTT-GTGAGATTAAAG-AGTTGCGGAATAAGAA
1 AACTTCGTGAG-TTAAAGTA-TTGCGGAATAAGAA
* * *
63822398 AACTTCGTTAGTTAAAGTATTGTGGCATAAGAA
1 AACTTCGTGAGTTAAAGTATTGCGGAATAAGAA
63822431 AA
1 AA
63822433 GTGTAACGCC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
33 25 0.83
34 5 0.17
ACGTcount: A:0.41, C:0.07, G:0.24, T:0.28
Consensus pattern (33 bp):
AACTTCGTGAGTTAAAGTATTGCGGAATAAGAA
Found at i:63826760 original size:43 final size:43
Alignment explanation
Indices: 63826710--63826796 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 43
63826700 ATTTTTGATT
**
63826710 TCGATATGTGTTTACGA-GTAAGACC-CTGTCTGGGACAGTGGCA
1 TCGATATGTGGCTAC-ATGTAAGACCAC-GTCTGGGACAGTGGCA
*
63826753 TCGATATGTGGCTACATGTAAGACCACGTCTGGGACATTGGCA
1 TCGATATGTGGCTACATGTAAGACCACGTCTGGGACAGTGGCA
63826796 T
1 T
63826797 TGTACTATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 37 0.95
44 1 0.03
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (43 bp):
TCGATATGTGGCTACATGTAAGACCACGTCTGGGACAGTGGCA
Found at i:63834565 original size:86 final size:85
Alignment explanation
Indices: 63834458--63834614 Score: 235
Period size: 86 Copynumber: 1.8 Consensus size: 85
63834448 ATCTAAATTA
* * * *
63834458 TCGTATAAGACCGTGTCTGGGACACTGGCATCGA-ATTGGAATTTACGTGTAAGACCATGTCTGG
1 TCGTATAAGACCCTGTCTGGGACACAGGCATCGATACT-GAA-TTACATGTAAGACCATGTCTGG
63834522 GACATCGGCATCGTATCTGTTT
64 GACATCGGCATCGTATCTGTTT
*
63834544 TCGTATAAGACCCTGTCTGGGACAGAGGCATCGATACTGAATTACATGTAAGACCATGTCTGGGA
1 TCGTATAAGACCCTGTCTGGGACACAGGCATCGATACTGAATTACATGTAAGACCATGTCTGGGA
*
63834609 CGTCGG
66 CATCGG
63834615 TATTGTACTT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
85 28 0.44
86 34 0.53
87 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (85 bp):
TCGTATAAGACCCTGTCTGGGACACAGGCATCGATACTGAATTACATGTAAGACCATGTCTGGGA
CATCGGCATCGTATCTGTTT
Found at i:63834566 original size:42 final size:42
Alignment explanation
Indices: 63834458--63834609 Score: 130
Period size: 42 Copynumber: 3.5 Consensus size: 42
63834448 ATCTAAATTA
*
63834458 TCGTATAAGACCGTGTCTGGGACACTGGCATCGAATTGGAATTT
1 TCGTATAAGACCATGTCTGGGACAC-GGCATCGAATTGG-ATTT
* * *
63834502 ACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT-G-TTT
1 TCGTATAAGACCATGTCTGGGACA-CGGCATCGAAT-TGGATTT
* * * *
63834544 TCGTATAAGACCCTGTCTGGGACAGAGGCATCGATACT-GAATT
1 TCGTATAAGACCATGTCTGGGACA-CGGCATCGA-ATTGGATTT
* * *
63834587 ACATGTAAGACCATGTCTGGGAC
1 TCGTATAAGACCATGTCTGGGAC
63834610 GTCGGTATTG
Statistics
Matches: 88, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 33 0.38
43 22 0.25
44 31 0.35
45 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (42 bp):
TCGTATAAGACCATGTCTGGGACACGGCATCGAATTGGATTT
Found at i:63835082 original size:12 final size:13
Alignment explanation
Indices: 63835065--63835096 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
63835055 GCAAATGTTA
63835065 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
63835077 AGTTTTGATGCAT
1 AGTTTTGATGCAT
63835090 -GTTTTGA
1 AGTTTTGA
63835097 AATGTGTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:63838009 original size:52 final size:53
Alignment explanation
Indices: 63837877--63838020 Score: 193
Period size: 53 Copynumber: 2.7 Consensus size: 53
63837867 TCTTACACGG
*
63837877 ATCACATCACACCGATGCCATATCCCAGATATGGTCTTATACGGAATCACATT
1 ATCACATCACACCGATGCCATATCCCAGCTATGGTCTTATACGGAATCACATT
** * *
63837930 ATCATGTCACACCGATGCCATAGCCCAGCTATGGTCTTATACGAGAA-CATA-T
1 ATCACATCACACCGATGCCATATCCCAGCTATGGTCTTATACG-GAATCACATT
***
63837982 ATCACATTGTACCGATGCCATATCCCAGCTATGGTCTTA
1 ATCACATCACACCGATGCCATATCCCAGCTATGGTCTTA
63838021 AATGGGCGCA
Statistics
Matches: 79, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
52 34 0.43
53 42 0.53
54 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (53 bp):
ATCACATCACACCGATGCCATATCCCAGCTATGGTCTTATACGGAATCACATT
Found at i:63839816 original size:6 final size:6
Alignment explanation
Indices: 63839805--63839829 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
63839795 CATCACTTTC
63839805 TCCACT TCCACT TCCACT TCCACT T
1 TCCACT TCCACT TCCACT TCCACT T
63839830 TCAATTTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.48, G:0.00, T:0.36
Consensus pattern (6 bp):
TCCACT
Found at i:63841184 original size:27 final size:27
Alignment explanation
Indices: 63841143--63841299 Score: 69
Period size: 27 Copynumber: 5.9 Consensus size: 27
63841133 TAATTAAGAC
* *
63841143 TCTAATCATCCTAACTTAATTTAAAAT
1 TCTAATTATCTTAACTTAATTTAAAAT
* * *
63841170 TCTACTTATCTTAACTAAATCT-AAA-
1 TCTAATTATCTTAACTTAATTTAAAAT
*
63841195 T-T-ATTATC-TAATCTATTGATTT-AAAT
1 TCTAATTATCTTAA-C--TTAATTTAAAAT
* * * * *
63841221 TATTAATT-TTTTAAAATTAA-TTAAGAC
1 T-CTAATTATCTT-AACTTAATTTAAAAT
* *
63841248 TCTAATCATCCTAACTTAATTTAAAAT
1 TCTAATTATCTTAACTTAATTTAAAAT
* * *
63841275 TCTACTTATCTTAACTAAATCTAAA
1 TCTAATTATCTTAACTTAATTTAAA
63841300 TTATTATCTA
Statistics
Matches: 92, Mismatches: 26, Indels: 24
0.65 0.18 0.17
Matches are distributed among these distances:
22 3 0.03
23 6 0.07
24 1 0.01
25 8 0.09
26 16 0.17
27 50 0.54
28 2 0.02
29 4 0.04
30 2 0.02
ACGTcount: A:0.40, C:0.15, G:0.01, T:0.44
Consensus pattern (27 bp):
TCTAATTATCTTAACTTAATTTAAAAT
Found at i:63841252 original size:105 final size:102
Alignment explanation
Indices: 63841069--63841593 Score: 513
Period size: 105 Copynumber: 5.1 Consensus size: 102
63841059 AAACTCTGAA
*
63841069 TTATCTTAACTAAAATCTAAATTATTATCTAATCTATTGATTTAAATTATTAATTTTTTAAAATT
1 TTATCTTAACT-AAATCTAAATTATTATCTAATCTATT-ATTTAAATTATTAATTTTTT-AAATA
63841134 AATTAAGACTCTAATCATCCTAACTTAATTTAAAATTCTAC
63 AATTAAGACTCTAATCATCCTAACTTAATTTAAAA-TCTAC
*
63841175 TTATCTTAACTAAATCTAAATTATTATCTAATCTATTGATTTAAATTATTAATTTTTTAAAATTA
1 TTATCTTAACTAAATCTAAATTATTATCTAATCTATT-ATTTAAATTATTAATTTTTT-AAATAA
63841240 ATTAAGACTCTAATCATCCTAACTTAATTTAAAATTCTAC
64 ATTAAGACTCTAATCATCCTAACTTAATTTAAAA-TCTAC
* * ** * **
63841280 TTATCTTAACTAAATCTAAATTATTATCTAATCTGTTAATTAAATTCCTAATTTCATTATCTAAA
1 TTATCTTAACTAAATCTAAATTATTATCTAATCTATTATTTAAATTATTAATTT-TTTAAATAAA
* *
63841345 TTAAAACTCTAATTATCCTAA-TTCAATTT-AAA-CT-C
65 TTAAGACTCTAATCATCCTAACTT-AATTTAAAATCTAC
* * * * * * * *
63841380 ATA-ATTATCTAAATCTAAATTATTACCTAATATTTTAATTTAAATTATTAATAATCTTAAATAA
1 TTATCTTAACTAAATCTAAATTATTATCTAATCTATT-ATTTAAATTATTAAT-TTTTTAAATAA
* * * * *
63841444 ATT-TGAACTCTAATTATTCTAATTTAATTTAAACACCTAC
64 ATTAAG-ACTCTAATCATCCTAACTTAATTTAAA-ATCTAC
* * * * ** * **
63841484 TTACCTTAACTAAAATCTAAATTATTATCCAACCTATTAATTAAATTCCTAATTATCTTATTTAA
1 TTATCTTAACT-AAATCTAAATTATTATCTAATCTATTATTTAAATTATTAATT-TTTTAAATAA
* * * * * * *
63841549 ATTAAAATTTTAATTATCCTAATTTAATTTAAACTCTAA
64 ATTAAGACTCTAATCATCCTAACTTAATTTAAAATCTAC
63841588 TTATCT
1 TTATCT
63841594 CTATTAATTT
Statistics
Matches: 356, Mismatches: 49, Indels: 30
0.82 0.11 0.07
Matches are distributed among these distances:
99 28 0.08
100 44 0.12
101 7 0.02
102 1 0.00
103 7 0.02
104 53 0.15
105 184 0.52
106 32 0.09
ACGTcount: A:0.41, C:0.13, G:0.01, T:0.45
Consensus pattern (102 bp):
TTATCTTAACTAAATCTAAATTATTATCTAATCTATTATTTAAATTATTAATTTTTTAAATAAAT
TAAGACTCTAATCATCCTAACTTAATTTAAAATCTAC
Found at i:63841429 original size:204 final size:202
Alignment explanation
Indices: 63841069--63841593 Score: 599
Period size: 204 Copynumber: 2.5 Consensus size: 202
63841059 AAACTCTGAA
* ** * * *
63841069 TTATCTTAACTAAAATCTAAATTATTATCTAATCTATTGATTTAAATTATTAATTTTTTAAAATT
1 TTATCTTAACTAAAATCTAAATTATTATCTAATCTATT-AATTAAATTCCTAATTTCTT-ATATA
* * * *
63841134 AATTAAGACTCTAATCATCCTAACTTAATTTAAAATTCTACTTATCTTAACTAAATCTAAATTAT
64 AATTAAAACTCTAATTATCCTAA-TTAATTT-AAA--CT-C-TA-ATTATCTAAATCTAAATTAT
* * * * * *
63841199 TATCTAATCTATTGATTTAAATTATTAAT-TTTTTAAAATTAATTA-AGACTCTAATCATCCTAA
122 TACCTAATATATTAATTTAAATTATTAATAATCTT-AAATAAATTAGA-ACTCTAATCATCCTAA
*
63841262 CTTAATTTAAA-ATTCTAC
185 CTTAATTTAAACA-CCTAC
* *
63841280 TTATCTTAACT-AAATCTAAATTATTATCTAATCTGTTAATTAAATTCCTAATTTCATTATCTAA
1 TTATCTTAACTAAAATCTAAATTATTATCTAATCTATTAATTAAATTCCTAATTTC-TTATATAA
63841344 ATTAAAACTCTAATTATCCTAATTCAATTTAAACTCATAATTATCTAAATCTAAATTATTACCTA
65 ATTAAAACTCTAATTATCCTAATT-AATTTAAACTC-TAATTATCTAAATCTAAATTATTACCTA
* * * * *
63841409 ATATTTTAATTTAAATTATTAATAATCTTAAATAAATTTGAACTCTAATTATTCTAATTTAATTT
128 ATATATTAATTTAAATTATTAATAATCTTAAATAAATTAGAACTCTAATCATCCTAACTTAATTT
63841474 AAACACCTAC
193 AAACACCTAC
* * * *
63841484 TTACCTTAACTAAAATCTAAATTATTATCCAACCTATTAATTAAATTCCTAATTATCTTATTTAA
1 TTATCTTAACTAAAATCTAAATTATTATCTAATCTATTAATTAAATTCCTAATT-TCTTATATAA
* *
63841549 ATTAAAATTTTAATTATCCTAATTTAATTTAAACTCTAATTATCT
65 ATTAAAACTCTAATTATCCTAA-TTAATTTAAACTCTAATTATCT
63841594 CTATTAATTT
Statistics
Matches: 274, Mismatches: 32, Indels: 23
0.83 0.10 0.07
Matches are distributed among these distances:
204 98 0.36
205 85 0.31
206 6 0.02
208 5 0.02
209 42 0.15
210 27 0.10
211 11 0.04
ACGTcount: A:0.41, C:0.13, G:0.01, T:0.45
Consensus pattern (202 bp):
TTATCTTAACTAAAATCTAAATTATTATCTAATCTATTAATTAAATTCCTAATTTCTTATATAAA
TTAAAACTCTAATTATCCTAATTAATTTAAACTCTAATTATCTAAATCTAAATTATTACCTAATA
TATTAATTTAAATTATTAATAATCTTAAATAAATTAGAACTCTAATCATCCTAACTTAATTTAAA
CACCTAC
Found at i:63841554 original size:26 final size:26
Alignment explanation
Indices: 63841522--63841674 Score: 98
Period size: 26 Copynumber: 5.8 Consensus size: 26
63841512 CCAACCTATT
63841522 AATTAAATTCCTAATTATCTTATTTA
1 AATTAAATTCCTAATTATCTTATTTA
* *
63841548 AATTAAAATT-TTAATTATCCTAATTTA
1 AATT-AAATTCCTAATTAT-CTTATTTA
* *
63841575 ATTTAAACT-CTAATTATCTCTA-TTA
1 AATTAAATTCCTAATTATCT-TATTTA
* * * **
63841600 ATTTAAATTCTTAATTGTCTTAACTA
1 AATTAAATTCCTAATTATCTTATTTA
* *
63841626 AATTAAA-TCTCTAATCATCGTTATATA
1 AATTAAATTC-CTAATTATC-TTATTTA
** * *
63841653 TTTTAAACTCCTAATTACCTTA
1 AATTAAATTCCTAATTATCTTA
63841675 ATCTACACAA
Statistics
Matches: 99, Mismatches: 20, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
25 17 0.17
26 48 0.48
27 32 0.32
28 2 0.02
ACGTcount: A:0.38, C:0.14, G:0.01, T:0.47
Consensus pattern (26 bp):
AATTAAATTCCTAATTATCTTATTTA
Found at i:63841638 original size:52 final size:53
Alignment explanation
Indices: 63841522--63841649 Score: 131
Period size: 52 Copynumber: 2.4 Consensus size: 53
63841512 CCAACCTATT
*
63841522 AATTAAAT-TCCTAATTATCTTATTTAAATTAAAATTTTAATTATCCTAATTTA
1 AATTAAATCT-CTAATTATCTTATTTAAATTAAAATTTTAATTATCCTAATCTA
* * * *
63841575 ATTTAAA-CTCTAATTATCTCTA-TT-AATTTAAATTCTTAATTGTCTTAA-CTA
1 AATTAAATCTCTAATTATCT-TATTTAAATTAAAATT-TTAATTATCCTAATCTA
*
63841626 AATTAAATCTCTAATCATCGTTAT
1 AATTAAATCTCTAATTATC-TTAT
63841650 ATATTTTAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
51 17 0.27
52 35 0.56
53 10 0.16
ACGTcount: A:0.38, C:0.12, G:0.02, T:0.48
Consensus pattern (53 bp):
AATTAAATCTCTAATTATCTTATTTAAATTAAAATTTTAATTATCCTAATCTA
Found at i:63841658 original size:78 final size:78
Alignment explanation
Indices: 63841517--63841669 Score: 184
Period size: 78 Copynumber: 2.0 Consensus size: 78
63841507 ATTATCCAAC
** * * *
63841517 CTATTAATTAAATTCCTAATTATCTTATTTAAATTAAAATTTTAATTATCCTAATTTAATTTAAA
1 CTATTAATTAAATTCCTAATTATCTTAACTAAATTAAAATTCTAATCATCCTAATATAATTTAAA
63841582 CT-CTAATTATCT
66 CTCCTAATTATCT
* * * * *
63841594 CTATTAATTTAAATTCTTAATTGTCTTAACTAAATT-AAATCTCTAATCATCGTTATATATTTTA
1 CTATTAA-TTAAATTCCTAATTATCTTAACTAAATTAAAAT-TCTAATCATCCTAATATAATTTA
63841658 AACTCCTAATTA
64 AACTCCTAATTA
63841670 CCTTAATCTA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
77 11 0.17
78 45 0.71
79 7 0.11
ACGTcount: A:0.38, C:0.13, G:0.01, T:0.48
Consensus pattern (78 bp):
CTATTAATTAAATTCCTAATTATCTTAACTAAATTAAAATTCTAATCATCCTAATATAATTTAAA
CTCCTAATTATCT
Found at i:63846898 original size:19 final size:19
Alignment explanation
Indices: 63846852--63846899 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
63846842 GTATATATTT
63846852 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
63846870 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
63846889 TAAGTTTTATT
1 TAAATTTTATT
63846900 CATATTTTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:63846975 original size:42 final size:42
Alignment explanation
Indices: 63846916--63847004 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
63846906 TTAGGAATAT
* * *
63846916 TTTTATTTTATCTTTTAGTAGTTTATTAGGACAAGGGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAACAAGGGAACTA
*
63846958 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAACAAGGGAACTA
63847000 TTTTC
1 TTTTC
63847005 CCAATTAGGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.28, C:0.07, G:0.15, T:0.51
Consensus pattern (42 bp):
TTTTCTTTTATATTTTAGTAGTTTATTAGAACAAGGGAACTA
Found at i:63850870 original size:19 final size:19
Alignment explanation
Indices: 63850809--63850862 Score: 108
Period size: 19 Copynumber: 2.8 Consensus size: 19
63850799 TATTTTCAAT
63850809 TTATTTAGGTAGATAAATC
1 TTATTTAGGTAGATAAATC
63850828 TTATTTAGGTAGATAAATC
1 TTATTTAGGTAGATAAATC
63850847 TTATTTAGGTAGATAA
1 TTATTTAGGTAGATAA
63850863 GTTTTATTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.37, C:0.04, G:0.17, T:0.43
Consensus pattern (19 bp):
TTATTTAGGTAGATAAATC
Found at i:63850946 original size:42 final size:42
Alignment explanation
Indices: 63850887--63850975 Score: 133
Period size: 42 Copynumber: 2.1 Consensus size: 42
63850877 CTAGGAATAT
* * *
63850887 TTTTATTTTATCTTTTAGTAGTTTATTAGGACAAGGAAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAACAAGGAAACTA
* *
63850929 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAACAAGGAAACTA
63850971 TTTTC
1 TTTTC
63850976 CCAATTAGGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.29, C:0.07, G:0.13, T:0.51
Consensus pattern (42 bp):
TTTTCTTTTATATTTTAGTAGTTTATTAGAACAAGGAAACTA
Found at i:63854179 original size:20 final size:21
Alignment explanation
Indices: 63854139--63854180 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
63854129 GAATAATTTG
63854139 AATAAGAACATAGCTCACATA
1 AATAAGAACATAGCTCACATA
* *
63854160 AATAA-AACATAGTTCGCATA
1 AATAAGAACATAGCTCACATA
63854180 A
1 A
63854181 TAATAGCGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.52, C:0.17, G:0.10, T:0.21
Consensus pattern (21 bp):
AATAAGAACATAGCTCACATA
Found at i:63858183 original size:52 final size:51
Alignment explanation
Indices: 63858100--63858354 Score: 289
Period size: 46 Copynumber: 5.1 Consensus size: 51
63858090 ATCAAGTGAC
* * *
63858100 AAAGTGATAAGTGGTAGC-TCTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTC-GGCTATACTTATCTGATCAAGTGACAAGT-G
* *
63858152 AAAGTGATAAGTAATAGCTTCGGCCATACTTATCTGATCAAGTGAC-----
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTG
*
63858198 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTG
*
63858249 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC-----
1 -AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTG
** * *
63858296 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-AAGTG
63858348 ATAAGTG
1 A-AAGTG
63858355 GCTACACTTA
Statistics
Matches: 176, Mismatches: 13, Indels: 27
0.81 0.06 0.12
Matches are distributed among these distances:
46 86 0.49
52 83 0.47
53 7 0.04
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.27
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTG
Found at i:63858206 original size:98 final size:97
Alignment explanation
Indices: 63858086--63858354 Score: 430
Period size: 98 Copynumber: 2.7 Consensus size: 97
63858076 TTTGAGTACT
*
63858086 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCT-TAGCTACACTTATCTGATCAAGTGACAAGTG
*
63858151 GAAAGTGATAAGTAATAGCTTCGGCCATACTTA
65 AAAAGTGATAAGTAATAGCTTCGGCCATACTTA
*
63858184 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTT-AGCTACACTTATCTGATCAAGTGACAAGTG
* *
63858249 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
65 AAAAGTGATAAGTAATAGCTTCGGCCATACTTA
* *
63858282 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGC-TTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
63858347 GATAAGTG
64 GAAAAGTG
63858355 GCTACACTTA
Statistics
Matches: 159, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
97 1 0.01
98 145 0.91
99 13 0.08
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (97 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTAGCTACACTTATCTGATCAAGTGACAAGTGA
AAAGTGATAAGTAATAGCTTCGGCCATACTTA
Found at i:63858362 original size:37 final size:37
Alignment explanation
Indices: 63858318--63858463 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
63858308 GATAGCTTTA
*
63858318 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
63858355 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
63858392 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
63858429 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
63858464 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:63863041 original size:21 final size:21
Alignment explanation
Indices: 63862995--63863044 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
63862985 ATAATAGTAT
*
63862995 AATCAAAACATAAAGTTTATA
1 AATCCAAACATAAAGTTTATA
63863016 AATCCAAACATAAAGTTTATA
1 AATCCAAACATAAAGTTTATA
63863037 AATCCAAA
1 AATCCAAA
63863045 TTATATAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.56, C:0.14, G:0.04, T:0.26
Consensus pattern (21 bp):
AATCCAAACATAAAGTTTATA
Found at i:63864992 original size:50 final size:49
Alignment explanation
Indices: 63864930--63865069 Score: 158
Period size: 49 Copynumber: 2.8 Consensus size: 49
63864920 CTCTTGAGCA
* *
63864930 TATAACAGGAAGCTCAT-GTGAGCCAT-GTAAAGGGAAGCTTATCCGGGTTG
1 TATAACAGGAAGCTCATAAT-AGCCATAGTAAA--GAAGCTCATCCGGGTTG
* * * *
63864980 TATAACAGGAAGCTCATAATAGCCATATTCAAGAAGCTCATGCTGGTTG
1 TATAACAGGAAGCTCATAATAGCCATAGTAAAGAAGCTCATCCGGGTTG
* * *
63865029 TATAACAGGAAGCTCATAATAGCCATATTCAGGAAGCTCAT
1 TATAACAGGAAGCTCATAATAGCCATAGTAAAGAAGCTCAT
63865070 GCGAGCCTAT
Statistics
Matches: 81, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
49 54 0.67
50 23 0.28
51 4 0.05
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (49 bp):
TATAACAGGAAGCTCATAATAGCCATAGTAAAGAAGCTCATCCGGGTTG
Found at i:63865020 original size:24 final size:24
Alignment explanation
Indices: 63864985--63865069 Score: 89
Period size: 24 Copynumber: 3.5 Consensus size: 24
63864975 GGTTGTATAA
63864985 CAGGAAGCTCATAATAGCCATATT
1 CAGGAAGCTCATAATAGCCATATT
* ** * *** *
63865009 CAAGAAGCTCATGCTGGTTGTATAA
1 CAGGAAGCTCATAATAGCCATAT-T
63865034 CAGGAAGCTCATAATAGCCATATT
1 CAGGAAGCTCATAATAGCCATATT
63865058 CAGGAAGCTCAT
1 CAGGAAGCTCAT
63865070 GCGAGCCTAT
Statistics
Matches: 44, Mismatches: 16, Indels: 2
0.71 0.26 0.03
Matches are distributed among these distances:
24 28 0.64
25 16 0.36
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (24 bp):
CAGGAAGCTCATAATAGCCATATT
Found at i:63865035 original size:49 final size:49
Alignment explanation
Indices: 63864975--63865071 Score: 185
Period size: 49 Copynumber: 2.0 Consensus size: 49
63864965 AGCTTATCCG
63864975 GGTTGTATAACAGGAAGCTCATAATAGCCATATTCAAGAAGCTCATGCT
1 GGTTGTATAACAGGAAGCTCATAATAGCCATATTCAAGAAGCTCATGCT
*
63865024 GGTTGTATAACAGGAAGCTCATAATAGCCATATTCAGGAAGCTCATGC
1 GGTTGTATAACAGGAAGCTCATAATAGCCATATTCAAGAAGCTCATGC
63865072 GAGCCTATAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (49 bp):
GGTTGTATAACAGGAAGCTCATAATAGCCATATTCAAGAAGCTCATGCT
Found at i:63865101 original size:48 final size:49
Alignment explanation
Indices: 63864980--63865102 Score: 133
Period size: 49 Copynumber: 2.5 Consensus size: 49
63864970 ATCCGGGTTG
* * **
63864980 TATAACAGGAAGCTCATAATAGCCATATTCAAGAAGCTCATGCTGGTTG
1 TATAACAGGAAGCTCAGAAGAGCCATATTCAAGAAGCTCATGCTGGTCC
* * *
63865029 TATAACAGGAAGCTCATAATAGCCATATTCAGGAAGCTCATGC-GAG-CC
1 TATAACAGGAAGCTCAGAAGAGCCATATTCAAGAAGCTCATGCTG-GTCC
* * *
63865077 TATAATAGGTAGCTCCGAAGAGCCAT
1 TATAACAGGAAGCTCAGAAGAGCCAT
63865103 TAACGGGAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
48 22 0.34
49 43 0.66
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (49 bp):
TATAACAGGAAGCTCAGAAGAGCCATATTCAAGAAGCTCATGCTGGTCC
Found at i:63871521 original size:21 final size:21
Alignment explanation
Indices: 63871497--63871546 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
63871487 GATTATATAA
63871497 TTTGGATTTATAAACTTTATG
1 TTTGGATTTATAAACTTTATG
63871518 TTTGGATTTATAAACTTTATG
1 TTTGGATTTATAAACTTTATG
*
63871539 TTTTGATT
1 TTTGGATT
63871547 ATACTATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.26, C:0.04, G:0.14, T:0.56
Consensus pattern (21 bp):
TTTGGATTTATAAACTTTATG
Found at i:63877385 original size:20 final size:21
Alignment explanation
Indices: 63877362--63877403 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
63877352 TCCGCTATTA
63877362 TTATGCGAACTATGTT-TTAT
1 TTATGCGAACTATGTTCTTAT
* *
63877382 TTATGTGAGCTATGTTCTTAT
1 TTATGCGAACTATGTTCTTAT
63877403 T
1 T
63877404 CAAATTATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.21, C:0.10, G:0.17, T:0.52
Consensus pattern (21 bp):
TTATGCGAACTATGTTCTTAT
Found at i:63888836 original size:15 final size:15
Alignment explanation
Indices: 63888806--63888838 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
63888796 ATTTTCTGTG
63888806 TTTATTTTGTGTAAA
1 TTTATTTTGTGTAAA
63888821 TTTATATTTGTG-AAA
1 TTTAT-TTTGTGTAAA
63888836 TTT
1 TTT
63888839 TCGTGAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (15 bp):
TTTATTTTGTGTAAA
Found at i:63891606 original size:130 final size:130
Alignment explanation
Indices: 63891367--63891726 Score: 472
Period size: 130 Copynumber: 2.7 Consensus size: 130
63891357 GAAAAACCGA
* * * *
63891367 AACCCAGCACAGTAGGGCACGATTCCTCGGATTTCCTAAACATCGAGTATTGCCTTCGTTTTGGA
1 AACCCAGCACAATAGGGCACGATTCC-C-GAATTGCTAAACATCGAGTATTGCCTTCATTTTGGA
*
63891432 GAATTTTTTAAAAGCATGAGTGATAACCTAAAGGAATATCCGATTGTTTTGAACAAACAAGAAAT
64 GAA-TTTTTAAAAGCATGAGTGAAAACCTAAAGGAATATCCGATTGTTTTGAACAAACAAGAAAT
63891497 CAC
128 CAC
* * *
63891500 AACCCAACACAATAGGGCATGATTCCCGAATTGCTAAACACCGAGTATTGCCTTCATTTTGGAGA
1 AACCCAGCACAATAGGGCACGATTCCCGAATTGCTAAACATCGAGTATTGCCTTCATTTTGGAGA
* *
63891565 ATTTTTAAAAGCATGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCAC
66 ATTTTTAAAAGCATGAGTGAAAACCTAAAGGAATATCCGATTGTTTTGAACAAACAAGAAATCAC
* * * * * **
63891630 AACCCAGCACAATAGGGCACGATTCTGCGAATCG-TCAAATATCGAATATCGCCTTCA-TTTAAA
1 AACCCAGCACAATAGGGCACGATTC-CCGAATTGCT-AAACATCGAGTATTGCCTTCATTTTGGA
* **
63891693 GAATTTTTAAAAGACATGGGTGAAATTCTAAAGG
64 GAATTTTTAAAAG-CATGAGTGAAAACCTAAAGG
63891727 GACCTTCGAT
Statistics
Matches: 201, Mismatches: 23, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
130 102 0.51
131 75 0.37
132 1 0.00
133 23 0.11
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (130 bp):
AACCCAGCACAATAGGGCACGATTCCCGAATTGCTAAACATCGAGTATTGCCTTCATTTTGGAGA
ATTTTTAAAAGCATGAGTGAAAACCTAAAGGAATATCCGATTGTTTTGAACAAACAAGAAATCAC
Found at i:63891765 original size:131 final size:129
Alignment explanation
Indices: 63891431--63891835 Score: 409
Period size: 131 Copynumber: 3.1 Consensus size: 129
63891421 TTCGTTTTGG
* * * ** *
63891431 AGAATTTTTTAAAAGCATGAGTGATAACCTAAAGGAATATCCGATTGTTTTGAACAAACAAGAAA
1 AGAA-TTTTTAAAAGCATGAGTGAAAACCTAAAGGAACATTCGATTACTTTGAACAAACGAGAAA
* * * * * *
63891496 TCACAACCCAACACAATAGGGCATGATTC-CCGAATTGCTAAACACCGAGTATTGCCTTCATTTT
65 TCACAACCCAACACAATAGGGCACGATTCTGCGAATTGC-AAATATCGAATATCGCCTTCA-TTT
**
63891560 GG
128 AA
* **
63891562 AGAATTTTTAAAAGCATGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAAT
1 AGAATTTTTAAAAGCATGAGTGAAAACCTAAAGGAACATTCGATTACTTTGAACAAACGAGAAAT
* *
63891627 CACAACCCAGCACAATAGGGCACGATTCTGCGAATCGTCAAATATCGAATATCGCCTTCATTTAA
66 CACAACCCAACACAATAGGGCACGATTCTGCGAATTG-CAAATATCGAATATCGCCTTCATTTAA
* ** * * * * *
63891692 AGAATTTTTAAAAGACATGGGTGAAATTCTAAAGGGACCTTCGATTACTTTGAGCAAATGAGAGA
1 AGAATTTTTAAAAG-CATGAGTGAAAACCTAAAGGAACATTCGATTACTTTGAACAAACGAGAAA
** ** * *
63891757 TTGCAACCCAACACGTTAGGGCACGA-TCTCGCGAATTGCCAAATGTCGAATATCACCTTCGATT
65 TCACAACCCAACACAATAGGGCACGATTCT-GCGAATTG-CAAATATCGAATATCGCCTTC-ATT
63891821 TAA
127 TAA
* *
63891824 AGGATTCTTAAA
1 AGAATTTTTAAA
63891836 TAATAGTGAA
Statistics
Matches: 234, Mismatches: 35, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
130 104 0.44
131 113 0.48
132 17 0.07
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (129 bp):
AGAATTTTTAAAAGCATGAGTGAAAACCTAAAGGAACATTCGATTACTTTGAACAAACGAGAAAT
CACAACCCAACACAATAGGGCACGATTCTGCGAATTGCAAATATCGAATATCGCCTTCATTTAA
Found at i:63902247 original size:20 final size:20
Alignment explanation
Indices: 63902219--63902256 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
63902209 CTAGGAACTA
63902219 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
63902239 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
63902257 TATATGTGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:63908098 original size:17 final size:18
Alignment explanation
Indices: 63908066--63908100 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
63908056 CCCTATGGCC
63908066 TACCCATGTAGGCCCACA
1 TACCCATGTAGGCCCACA
*
63908084 TACCCTTGT-GGCCCACA
1 TACCCATGTAGGCCCACA
63908101 CAGTCTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.23, C:0.40, G:0.17, T:0.20
Consensus pattern (18 bp):
TACCCATGTAGGCCCACA
Found at i:63909881 original size:16 final size:17
Alignment explanation
Indices: 63909862--63909895 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
63909852 AAATATTATG
63909862 AAATAAA-AATAAACAA
1 AAATAAACAATAAACAA
*
63909878 AAATAAACATTAAACAA
1 AAATAAACAATAAACAA
63909895 A
1 A
63909896 CACTATCCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (17 bp):
AAATAAACAATAAACAA
Found at i:63912659 original size:40 final size:40
Alignment explanation
Indices: 63912602--63912851 Score: 312
Period size: 40 Copynumber: 6.3 Consensus size: 40
63912592 CTAACGGGGT
* * *
63912602 TAAGTCCCGAAGACATTTGTGCTAGTGATTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
*
63912642 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
*
63912682 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
*
63912722 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
* *
63912762 TAAGTCCCGAAGGCATTTGCGCTAGTGACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
* * * **
63912802 TAAGACCCGATGGC-CTTGTGCGAGTGGTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
*
63912840 TAAATCCCGAAG
1 TAAGTCCCGAAG
63912852 ATAAGTGGGT
Statistics
Matches: 192, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
38 12 0.06
39 16 0.08
40 163 0.85
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
Found at i:63912735 original size:80 final size:80
Alignment explanation
Indices: 63912602--63912851 Score: 346
Period size: 80 Copynumber: 3.1 Consensus size: 80
63912592 CTAACGGGGT
* *
63912602 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
63912667 TTACTA-ATTCCGGGC
66 TTACTATA-TCCGGGC
* *
63912682 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
63912747 TTACTATATCCGGGC
66 TTACTATATCCGGGC
* * * *
63912762 TAAGTCCCGAAGGCATTTGCGCTAGTGACT-ATATCCGGGCTAAGACCCGATGGC-CTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
***
63912825 GTGGTTATATCC-GGC
65 GTTACTATATCCGGGC
*
63912840 TAAATCCCGAAG
1 TAAGTCCCGAAG
63912852 ATAAGTGGGT
Statistics
Matches: 154, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
78 14 0.09
79 19 0.12
80 120 0.78
81 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TTACTATATCCGGGC
Found at i:63915182 original size:17 final size:18
Alignment explanation
Indices: 63915145--63915182 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
63915135 TATAATTTAC
*
63915145 ATTTCTCATACATGAATCA
1 ATTTCACATACAT-AATCA
63915164 ATTTCACATACAT-ATCA
1 ATTTCACATACATAATCA
63915181 AT
1 AT
63915183 CTAACATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
19 12 0.67
ACGTcount: A:0.39, C:0.21, G:0.03, T:0.37
Consensus pattern (18 bp):
ATTTCACATACATAATCA
Found at i:63916628 original size:43 final size:42
Alignment explanation
Indices: 63916571--63916727 Score: 154
Period size: 43 Copynumber: 3.7 Consensus size: 42
63916561 ATGCCATATC
* * * *
63916571 CCAGATATAGTCTTACATGTTATCACATATCGATGCCACTGT
1 CCAGACATGGTCTTACACGTAATCACATATCGATGCCACTGT
* * * * * *
63916613 CTCAGACAGGGTCTTACACGAAATCATATAACGAAGCCAATGT
1 C-CAGACATGGTCTTACACGTAATCACATATCGATGCCACTGT
* *
63916656 CCCAGACATGGTCTTACACATAATCACA-ATACAATGCCACTGT
1 -CCAGACATGGTCTTACACGTAATCACATAT-CGATGCCACTGT
*
63916699 CCTAGACATGGTCTTACATGTAATCACAT
1 CC-AGACATGGTCTTACACGTAATCACAT
63916728 CTCGGTAATC
Statistics
Matches: 90, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
42 4 0.04
43 85 0.94
44 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (42 bp):
CCAGACATGGTCTTACACGTAATCACATATCGATGCCACTGT
Found at i:63919925 original size:24 final size:24
Alignment explanation
Indices: 63919898--63919945 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
63919888 TTGCACTTTG
63919898 TCTAGGCTAAAAGGGGCTTTCTTA
1 TCTAGGCTAAAAGGGGCTTTCTTA
*
63919922 TCTAGGTTAAAAGGGGCTTTCTTA
1 TCTAGGCTAAAAGGGGCTTTCTTA
63919946 CACCGACTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (24 bp):
TCTAGGCTAAAAGGGGCTTTCTTA
Found at i:63927448 original size:35 final size:35
Alignment explanation
Indices: 63927399--63927469 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
63927389 AATTCAATAG
*
63927399 ACTCTACAGTCAAAGTCTTACTAGATACTAAATTC
1 ACTCTACAGGCAAAGTCTTACTAGATACTAAATTC
63927434 ACTCTACAGGCAAAGTCTTACTAGATACTAAATTC
1 ACTCTACAGGCAAAGTCTTACTAGATACTAAATTC
63927469 A
1 A
63927470 TACATATATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.30
Consensus pattern (35 bp):
ACTCTACAGGCAAAGTCTTACTAGATACTAAATTC
Found at i:63932750 original size:38 final size:38
Alignment explanation
Indices: 63932708--63932811 Score: 118
Period size: 38 Copynumber: 2.7 Consensus size: 38
63932698 TCAATACACT
63932708 GGCACAAAGCCTGCTAGGCACATAGCCCAAACATCACC
1 GGCACAAAGCCTGCTAGGCACATAGCCCAAACATCACC
* * * ** *
63932746 GGCACATAGCCTGCTAGGCACACAACCTGAATATCACC
1 GGCACAAAGCCTGCTAGGCACATAGCCCAAACATCACC
*** *
63932784 AATACAAAGCCTACTAGGCACATAGCCC
1 GGCACAAAGCCTGCTAGGCACATAGCCC
63932812 TAATAACATT
Statistics
Matches: 52, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.35, C:0.35, G:0.17, T:0.13
Consensus pattern (38 bp):
GGCACAAAGCCTGCTAGGCACATAGCCCAAACATCACC
Found at i:63935277 original size:43 final size:43
Alignment explanation
Indices: 63935229--63935314 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
63935219 ATCACATGTA
* *
63935229 TCGCATTCATTAGGAACTCAGACCACTCAACGAGCTCGGATGC
1 TCGCATCCATAAGGAACTCAGACCACTCAACGAGCTCGGATGC
* *
63935272 TCGCATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGC
1 TCGCATCCATAAGGAACTCAGACCACTCAACGAGCTCGGATGC
63935315 CACATATATC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (43 bp):
TCGCATCCATAAGGAACTCAGACCACTCAACGAGCTCGGATGC
Found at i:63937295 original size:15 final size:15
Alignment explanation
Indices: 63937272--63937311 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
63937262 ACCAAAGAGA
63937272 AAACAAACAAAAAAAC
1 AAAC-AACAAAAAAAC
*
63937288 AAACAACAACAAAAC
1 AAACAACAAAAAAAC
63937303 AAA-AACAAA
1 AAACAACAAA
63937312 GAAGTTTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 5 0.23
15 13 0.59
16 4 0.18
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (15 bp):
AAACAACAAAAAAAC
Found at i:63938975 original size:17 final size:17
Alignment explanation
Indices: 63938935--63938976 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
63938925 TTGAAATTAT
*
63938935 TTTTAAAATTTAGAAAA
1 TTTTAAAATTTAAAAAA
*
63938952 TTCTAAAA-TTAAAAAA
1 TTTTAAAATTTAAAAAA
63938968 TTATTAAAA
1 TT-TTAAAA
63938977 AGTAGATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (17 bp):
TTTTAAAATTTAAAAAA
Found at i:63942416 original size:31 final size:31
Alignment explanation
Indices: 63942369--63942440 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 31
63942359 ATAAAATTGC
63942369 ACATGAA-TTTTGGTTTAATTCGT-AATATTAT
1 ACATGAACTTTTGGTTTAATT--TAAATATTAT
*
63942400 ACATGAGCTTTT-GTTTAATTTAAATATTAT
1 ACATGAACTTTTGGTTTAATTTAAATATTAT
*
63942430 GCATGAACTTT
1 ACATGAACTTT
63942441 GATTTTGTAC
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
29 1 0.03
30 17 0.47
31 14 0.39
32 4 0.11
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.47
Consensus pattern (31 bp):
ACATGAACTTTTGGTTTAATTTAAATATTAT
Found at i:63952618 original size:47 final size:46
Alignment explanation
Indices: 63952520--63952647 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 46
63952510 AATCGATAAG
* *** *
63952520 TACCTATACCATGGCCCGTAGGCAAATCAAGGTAACTTATCTTGGAG
1 TACCTATACCATGGCCCGTA-GCAAATCAAGGTAACTCATCTCAAAA
* *
63952567 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAGCTCCTCTCAAAA
1 TACCTATACCATGGCCCGTAG-CAAATCAAGGTAACTCATCTCAAAA
* *
63952614 TACCTATATCATGGCCCATAGCAGAATCAAGGTA
1 TACCTATACCATGGCCCGTAGCA-AATCAAGGTA
63952648 TTATTCGCAC
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 3 0.04
47 67 0.96
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (46 bp):
TACCTATACCATGGCCCGTAGCAAATCAAGGTAACTCATCTCAAAA
Found at i:63955981 original size:20 final size:19
Alignment explanation
Indices: 63955949--63956001 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
63955939 CATATAGTAT
63955949 TTATATT-TGTATATTATTTA
1 TTATATTAT-TATATTA-TTA
*
63955969 TTATATTATTATA-CATTA
1 TTATATTATTATATTATTA
63955987 TTATA-TATTATATTA
1 TTATATTATTATATTA
63956002 CATACATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
17 7 0.24
18 9 0.31
19 1 0.03
20 11 0.38
21 1 0.03
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (19 bp):
TTATATTATTATATTATTA
Found at i:63956074 original size:21 final size:20
Alignment explanation
Indices: 63956014--63956079 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 20
63956004 TACATTTTAC
*
63956014 TATATA-TATATATTAT-TT
1 TATATATTATATATTTTGTT
*
63956032 TATATATTATCTATCATATTGTT
1 TATATATTA--TAT-ATTTTGTT
63956055 TATATCATTATATATTTTGTT
1 TATAT-ATTATATATTTTGTT
63956076 TATA
1 TATA
63956080 AATTTTATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
18 6 0.15
19 2 0.05
21 14 0.36
22 6 0.15
23 7 0.18
24 4 0.10
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (20 bp):
TATATATTATATATTTTGTT
Found at i:63956384 original size:16 final size:16
Alignment explanation
Indices: 63956348--63956380 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
63956338 TCTTTTTTTT
*
63956348 TATTTTATTTGATTTA
1 TATTTTATATGATTTA
63956364 TATTTTATATG-TTTA
1 TATTTTATATGATTTA
63956379 TA
1 TA
63956381 ATTTGCTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (16 bp):
TATTTTATATGATTTA
Found at i:63973380 original size:53 final size:53
Alignment explanation
Indices: 63973311--63973416 Score: 142
Period size: 53 Copynumber: 2.0 Consensus size: 53
63973301 TTTTCCTTTT
* * * * *
63973311 TGAACTTACCATTGCCATGTCTT-GACATGGTCTTACGTGGTATCCTTACCTTA
1 TGAACTCACCAATGCCATGCCTTAG-CATGGTCTTACATGATATCCTTACCTTA
*
63973364 TGAACTCACCAATGCCATGCCTTAGCATGGTCTTACATGATATCCTTATCTTA
1 TGAACTCACCAATGCCATGCCTTAGCATGGTCTTACATGATATCCTTACCTTA
63973417 CCAAATGCCA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 45 0.98
54 1 0.02
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (53 bp):
TGAACTCACCAATGCCATGCCTTAGCATGGTCTTACATGATATCCTTACCTTA
Found at i:63973446 original size:47 final size:47
Alignment explanation
Indices: 63973389--63973510 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
63973379 CATGCCTTAG
*
63973389 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
63973436 CTTGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
*
63973483 CACGGTCTTACATGGTATCCTTATCTTA
1 CATGGTCTTACATGGTATCCTTATCTTA
63973511 GTGCCAATGC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:63973699 original size:44 final size:44
Alignment explanation
Indices: 63973650--63973734 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
63973640 ATCCTTAACC
* *
63973650 GTCAATTCCTCCTTAAATGCCATGTTATAAACATGGACTTTTCT
1 GTCAATTCCTCCTTAAATGCCATGGTACAAACATGGACTTTTCT
* * *
63973694 GTCAATTCTTCCTTAATTGCCATGGTACAACCATGGACTTT
1 GTCAATTCCTCCTTAAATGCCATGGTACAAACATGGACTTT
63973735 GAGATATCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.38
Consensus pattern (44 bp):
GTCAATTCCTCCTTAAATGCCATGGTACAAACATGGACTTTTCT
Found at i:63974308 original size:31 final size:30
Alignment explanation
Indices: 63974273--63974330 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
63974263 CTAACTCAAA
63974273 CTTTGAAAAAATTACAATTTTGCCCCTACAC
1 CTTTG-AAAAATTACAATTTTGCCCCTACAC
* * *
63974304 CTTTGCAAAATTACGATTTTTCCCCTA
1 CTTTGAAAAATTACAATTTTGCCCCTA
63974331 GGCTTGAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (30 bp):
CTTTGAAAAATTACAATTTTGCCCCTACAC
Found at i:63980027 original size:55 final size:53
Alignment explanation
Indices: 63979902--63980104 Score: 239
Period size: 55 Copynumber: 3.8 Consensus size: 53
63979892 AACTTACCAT
* * * * *
63979902 TGCCATGTCTTGACATGGTCATACATGGTATCCTTGCCATAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAATTCATCAA
* *
63979955 TGCCATGCCTTGTCATGGTCTTACATGGGACCTTTGCCTTATAGTAATTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AATTCATCAA
* *
63980010 TGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTT-ATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAA-TTCATCAA
* *
63980064 TGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGTCTTA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTA
63980105 CCAAATGCCA
Statistics
Matches: 129, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
52 2 0.02
53 35 0.27
54 43 0.33
55 47 0.36
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAATTCATCAA
Found at i:63980309 original size:44 final size:44
Alignment explanation
Indices: 63980243--63980326 Score: 98
Period size: 44 Copynumber: 1.9 Consensus size: 44
63980233 TCCTTAACCT
* * *
63980243 TCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTTCCA
1 TCAATTCCTCCCTAAATGCCATGGTA-CAACCATGGACTTTTCCA
* * *
63980287 TCAATTCTTCCCTAATTTCCATGGTACAACCATGGACTTT
1 TCAATTCCTCCCTAAATGCCATGGTACAACCATGGACTTT
63980327 GAGATATCAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
43 2 0.06
44 31 0.94
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (44 bp):
TCAATTCCTCCCTAAATGCCATGGTACAACCATGGACTTTTCCA
Found at i:63980880 original size:31 final size:30
Alignment explanation
Indices: 63980845--63980902 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
63980835 CTAACTCAAA
63980845 CTTTGGAAAAATTACAATTTTGCCCCTACAC
1 CTTT-GAAAAATTACAATTTTGCCCCTACAC
* * *
63980876 CTTTGCAAAATTACGATTTTTCCCCTA
1 CTTTGAAAAATTACAATTTTGCCCCTA
63980903 GGCTTGAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.29, C:0.26, G:0.09, T:0.36
Consensus pattern (30 bp):
CTTTGAAAAATTACAATTTTGCCCCTACAC
Found at i:63987190 original size:46 final size:46
Alignment explanation
Indices: 63987058--63987190 Score: 121
Period size: 46 Copynumber: 2.8 Consensus size: 46
63987048 ATTGTGGACT
* *
63987058 AGTGTAAGACCATGTCT-GAGACATGGCATCGGC-ATTGAGATGAGAGCT
1 AGTGTAA-AACATGTCTAG-GACAT-GCATCGGCTA-TGAGATGAGAGCC
* * * *
63987106 AGTGTAAGACATGTCTAGGACAAGTATCAGCCT-TGAGATGTA-AGCC
1 AGTGTAAAACATGTCTAGGACATGCATC-GGCTATGAGATG-AGAGCC
*
63987152 AGTGTAAAACATGTCTAGGACATGCATCGGCTACGAGAT
1 AGTGTAAAACATGTCTAGGACATGCATCGGCTATGAGAT
63987191 ATGTCAGTTT
Statistics
Matches: 69, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
45 3 0.04
46 44 0.64
47 14 0.20
48 8 0.12
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAAACATGTCTAGGACATGCATCGGCTATGAGATGAGAGCC
Found at i:63987243 original size:31 final size:31
Alignment explanation
Indices: 63987205--63987266 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
63987195 CAGTTTAAGA
* * *
63987205 CATGTCTAAGACATGGCGTCGACATGGATAT
1 CATGTCTAAAACATGGCATCGACACGGATAT
63987236 CATGTCTAAAACATGGCATCGACACGGATAT
1 CATGTCTAAAACATGGCATCGACACGGATAT
63987267 GTGAGAGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (31 bp):
CATGTCTAAAACATGGCATCGACACGGATAT
Found at i:63987338 original size:47 final size:47
Alignment explanation
Indices: 63987271--63987400 Score: 233
Period size: 47 Copynumber: 2.8 Consensus size: 47
63987261 GGATATGTGA
* *
63987271 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGACTTGATGGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGAT
63987318 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGAT
*
63987365 GAGCCAGTGTAAGACCATGTCTGGAACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
63987401 GCTTTATACC
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 80 1.00
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGAT
Found at i:64011116 original size:13 final size:13
Alignment explanation
Indices: 64011100--64011127 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
64011090 GACACACCCC
64011100 TGGCACACGCCTG
1 TGGCACACGCCTG
64011113 TGGCACACGCCTG
1 TGGCACACGCCTG
64011126 TG
1 TG
64011128 TTCGATTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.36, G:0.32, T:0.18
Consensus pattern (13 bp):
TGGCACACGCCTG
Found at i:64014226 original size:46 final size:46
Alignment explanation
Indices: 64014159--64014251 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
64014149 CTCAGCTCTC
64014159 TCAGCATCATTTTCAACGGTAGCCCAGAACTCCTAAGCCCCGTGTT
1 TCAGCATCATTTTCAACGGTAGCCCAGAACTCCTAAGCCCCGTGTT
64014205 TCAGCATCATTTTCAACGGTAGCCCAGAACTCCTAAGCCCCGTGTT
1 TCAGCATCATTTTCAACGGTAGCCCAGAACTCCTAAGCCCCGTGTT
64014251 T
1 T
64014252 ATGAATCTTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (46 bp):
TCAGCATCATTTTCAACGGTAGCCCAGAACTCCTAAGCCCCGTGTT
Found at i:64051045 original size:25 final size:25
Alignment explanation
Indices: 64050997--64051045 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
64050987 ATGGTCATGG
* *
64050997 CATATTTTGTAAAGCCTTTGTGGCA
1 CATATTCTGTAAAGCCTTTATGGCA
64051022 CATATTCTGTAAAGACC-TTATGGC
1 CATATTCTGTAAAG-CCTTTATGGC
64051046 TTATTATCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (25 bp):
CATATTCTGTAAAGCCTTTATGGCA
Found at i:64052717 original size:20 final size:20
Alignment explanation
Indices: 64052692--64052794 Score: 53
Period size: 20 Copynumber: 5.2 Consensus size: 20
64052682 CACATAAGTG
64052692 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
** ** * ** *
64052712 CCCCTGAATACACATAAGTG
1 CCCCTGTTTGTACTTCGGTA
*
64052732 CCTCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
** * * ** *
64052752 CCCCTGAATGCACATAAGTG
1 CCCCTGTTTGTACTTCGGTA
*
64052772 CACCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
64052792 CCC
1 CCC
64052795 TTGAATGCAC
Statistics
Matches: 49, Mismatches: 34, Indels: 0
0.59 0.41 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.19, C:0.30, G:0.18, T:0.32
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:64052731 original size:40 final size:40
Alignment explanation
Indices: 64052676--64052884 Score: 319
Period size: 40 Copynumber: 5.2 Consensus size: 40
64052666 TATATATATA
64052676 TGAATGCACATAAGTGCCCCTGTTTGTACTTCGGTACCCC
1 TGAATGCACATAAGTGCCCCTGTTTGTACTTCGGTACCCC
* *
64052716 TGAATACACATAAGTGCCTCTGTTTGTACTTCGGTACCCC
1 TGAATGCACATAAGTGCCCCTGTTTGTACTTCGGTACCCC
* *
64052756 TGAATGCACATAAGTGCACCTGTTTGTACTTCGGTACCCT
1 TGAATGCACATAAGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * *
64052796 TGAATGCACATAAGTGGCCTTGTTTGTACTTTGGTAACCT
1 TGAATGCACATAAGTGCCCCTGTTTGTACTTCGGTACCCC
* *
64052836 TGAATGCACATAAGTGCCCCTGTTTGCACTTCGATACCCC
1 TGAATGCACATAAGTGCCCCTGTTTGTACTTCGGTACCCC
64052876 TGAATGCAC
1 TGAATGCAC
64052885 CTGTTTGTAC
Statistics
Matches: 151, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 151 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (40 bp):
TGAATGCACATAAGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:64053645 original size:31 final size:31
Alignment explanation
Indices: 64053607--64053671 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
64053597 CTTAGTGTCC
64053607 AAGAAAGCATGTTTTGGTGAACTTGAGTTTT
1 AAGAAAGCATGTTTTGGTGAACTTGAGTTTT
64053638 AAGAAAGCATGTTTTGGTGAACTTGAGTTTT
1 AAGAAAGCATGTTTTGGTGAACTTGAGTTTT
64053669 AAG
1 AAG
64053672 GTACATTTAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (31 bp):
AAGAAAGCATGTTTTGGTGAACTTGAGTTTT
Found at i:64066086 original size:30 final size:29
Alignment explanation
Indices: 64066052--64066126 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 29
64066042 ACACGAGTGG
64066052 CCACACGGATGTGTG-CAGCACACAGGCGGT
1 CCACACGG-TGTGTGCCA-CACACAGGCGGT
*
64066082 CCACACAGGTGTGTGCCACACACGGGCGGT
1 CCACAC-GGTGTGTGCCACACACAGGCGGT
64066112 CCACACGGTCGTGTG
1 CCACACGGT-GTGTG
64066127 ATTTTGGAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
29 3 0.07
30 34 0.83
31 4 0.10
ACGTcount: A:0.20, C:0.32, G:0.33, T:0.15
Consensus pattern (29 bp):
CCACACGGTGTGTGCCACACACAGGCGGT
Found at i:64066245 original size:21 final size:21
Alignment explanation
Indices: 64066221--64066274 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
64066211 CGAGCGTGTG
*
64066221 CCTTAGACACAAGGCCGTATC
1 CCTTGGACACAAGGCCGTATC
**
64066242 CCTTGGACACAAGGTTGTATC
1 CCTTGGACACAAGGCCGTATC
64066263 CCTTGGACACAA
1 CCTTGGACACAA
64066275 AGTTGTGTCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (21 bp):
CCTTGGACACAAGGCCGTATC
Found at i:64066294 original size:21 final size:21
Alignment explanation
Indices: 64066237--64066287 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
64066227 ACACAAGGCC
*
64066237 GTATCCCTTGGACACAAGGTT
1 GTATCCCTTGGACACAAAGTT
64066258 GTATCCCTTGGACACAAAGTT
1 GTATCCCTTGGACACAAAGTT
*
64066279 GTGTCCCTT
1 GTATCCCTT
64066288 AGCCACACGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (21 bp):
GTATCCCTTGGACACAAAGTT
Found at i:64071031 original size:26 final size:26
Alignment explanation
Indices: 64070994--64071049 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
64070984 TTTCACCCCT
64070994 AAAATCCTAACCTTAAAAAAATTAAA
1 AAAATCCTAACCTTAAAAAAATTAAA
**
64071020 AAAACTCC-AACCTTATCAAAATTAAA
1 AAAA-TCCTAACCTTAAAAAAATTAAA
64071046 AAAA
1 AAAA
64071050 AATCGAGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.61, C:0.18, G:0.00, T:0.21
Consensus pattern (26 bp):
AAAATCCTAACCTTAAAAAAATTAAA
Found at i:64071258 original size:17 final size:18
Alignment explanation
Indices: 64071225--64071259 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
64071215 ATTTAATTTT
*
64071225 TTTTTATAATTTAAAAAC
1 TTTTTATAATCTAAAAAC
64071243 TTTTTATAATCTAAAAA
1 TTTTTATAATCTAAAAA
64071260 TATTGACGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTTTATAATCTAAAAAC
Found at i:64071930 original size:17 final size:17
Alignment explanation
Indices: 64071908--64071941 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
64071898 ATCCACTAAT
*
64071908 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
64071925 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
64071942 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:64076569 original size:17 final size:17
Alignment explanation
Indices: 64076547--64076580 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
64076537 ATCCACTAAT
*
64076547 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
64076564 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
64076581 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:64077164 original size:17 final size:17
Alignment explanation
Indices: 64077142--64077175 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
64077132 TCGTAGAAAA
* *
64077142 GAATTTTTAATTTTTAT
1 GAATTTATAATATTTAT
64077159 GAATTTATAATATTTAT
1 GAATTTATAATATTTAT
64077176 TTAACCGAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (17 bp):
GAATTTATAATATTTAT
Found at i:64084198 original size:21 final size:21
Alignment explanation
Indices: 64084174--64084214 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
64084164 CCACCTTCTC
*
64084174 CATCCCCACCTCCACCTCCAA
1 CATCCCCACCGCCACCTCCAA
* *
64084195 CATCTCCATCGCCACCTCCA
1 CATCCCCACCGCCACCTCCA
64084215 CCTCCTCCGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.59, G:0.02, T:0.17
Consensus pattern (21 bp):
CATCCCCACCGCCACCTCCAA
Found at i:64085489 original size:79 final size:79
Alignment explanation
Indices: 64085358--64085509 Score: 184
Period size: 79 Copynumber: 1.9 Consensus size: 79
64085348 AGTATGTATC
* * * *
64085358 TGTTTTAAAAGTTAAAGAGTCTGGATGATAACCCTTCTAATTGTTCTTTTGTTGAACGAT-TGAG
1 TGTTTTAAAAGTCAAAGAGTCTGGATGATAACCCCTCTAATTGTTCCTTTGTTGAA-AATCTGAG
*
64085422 CTATGTTATGCTCTT
65 CTATATTATGCTCTT
* * *
64085437 TGTTTTAAAAGTCAAAGAGTGTGGATGGA-AACCCCTGTCATCT-TTCCTTTGTTGAAAATCTGA
1 TGTTTTAAAAGTCAAAGAGTCTGGAT-GATAACCCCTCTAAT-TGTTCCTTTGTTGAAAATCTGA
64085500 GCTATATTAT
64 GCTATATTAT
64085510 CCTTCTTTCG
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
78 2 0.03
79 57 0.92
80 3 0.05
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (79 bp):
TGTTTTAAAAGTCAAAGAGTCTGGATGATAACCCCTCTAATTGTTCCTTTGTTGAAAATCTGAGC
TATATTATGCTCTT
Found at i:64094047 original size:12 final size:13
Alignment explanation
Indices: 64094020--64094052 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
64094010 AATAGTATAT
64094020 ATATATAAAAGGTA
1 ATATATAAAA-GTA
64094034 ATATATAAAA-TA
1 ATATATAAAAGTA
64094046 ATATATA
1 ATATATA
64094053 CTTCAATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.47
14 10 0.53
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (13 bp):
ATATATAAAAGTA
Found at i:64095637 original size:88 final size:88
Alignment explanation
Indices: 64095544--64095727 Score: 266
Period size: 88 Copynumber: 2.1 Consensus size: 88
64095534 CCGATACATG
** *
64095544 GAGATAAGA-TCTGTAATCTTCAGTCTACT-TCCTGCAACTTCAGGAAGATAAGACTTGTATCTT
1 GAGATAAGACT-TGT-ATCTTCAACCTACTCTCCTGCAACCTCAGGAAGATAAGACTTGTATCTT
64095607 CAACCTGCTCTCTTGCTACCTCAG-
64 CAACCTGCTCTCTTGCTACCTCAGA
* * *
64095631 GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGGAAGATAAGACTTGTATCTTC
1 G-AGATAAGACTTGTATCTTCAACCTACTCTCCTGCAACCTCAGGAAGATAAGACTTGTATCTTC
64095696 AACCTGCTCTCTTGCTACCTCAGA
65 AACCTGCTCTCTTGCTACCTCAGA
64095720 GAGATAAG
1 GAGATAAG
64095728 GCTGGTGGCT
Statistics
Matches: 87, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
87 12 0.14
88 73 0.84
89 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (88 bp):
GAGATAAGACTTGTATCTTCAACCTACTCTCCTGCAACCTCAGGAAGATAAGACTTGTATCTTCA
ACCTGCTCTCTTGCTACCTCAGA
Found at i:64095747 original size:88 final size:88
Alignment explanation
Indices: 64095583--64095748 Score: 253
Period size: 88 Copynumber: 1.9 Consensus size: 88
64095573 TCCTGCAACT
* *
64095583 TCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGGAAGATAAGACTTGTAT
1 TCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGGAAGATAAGACTGGTAG
**
64095648 CTTCAACCTGCTCTCTTGCTACC
66 CTAAAACCTGCTCTCTTGCTACC
* *
64095671 TCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCA-GAGAGATAAGGCTGGTG
1 TCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGGA-AGATAAGACTGGTA
*
64095735 GCTAAAATCTGCTC
65 GCTAAAACCTGCTC
64095749 CATAGCCGAT
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
87 2 0.03
88 68 0.97
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (88 bp):
TCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGGAAGATAAGACTGGTAG
CTAAAACCTGCTCTCTTGCTACC
Found at i:64095748 original size:44 final size:44
Alignment explanation
Indices: 64095583--64095727 Score: 274
Period size: 44 Copynumber: 3.3 Consensus size: 44
64095573 TCCTGCAACT
64095583 TCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACC
1 TCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACC
64095627 TCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACC
1 TCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACC
64095671 TCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACC
1 TCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACC
64095715 TCA-GAGAGATAAG
1 TCAGGA-AGATAAG
64095728 GCTGGTGGCT
Statistics
Matches: 100, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
43 2 0.02
44 98 0.98
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (44 bp):
TCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACC
Found at i:64095924 original size:176 final size:177
Alignment explanation
Indices: 64095671--64096183 Score: 760
Period size: 176 Copynumber: 2.9 Consensus size: 177
64095661 TCTTGCTACC
*
64095671 TCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGG
1 TCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGG
* * * *
64095736 CTAAAATCTGCTCCATAGCCGATATATGGAGATAAGATTCGCCATCTTCGATCTGTTCCATAGCC
66 CTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCC
*
64095801 GATACATGGAGATAAGATCTGTAATTTTCAGTCTGA-TTTCTGCAACT
131 GATACATGGAGATAAGATCTGTAATTTTCAGTCT-ACTTCCTGCAACT
* * * *
64095848 TCAGGAAGATAAGACTTGTATCTTTAACTTGCTCTC-TGCAACTTTAGAGAGATAAGGCTGGTGG
1 TCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGG
* ** *
64095912 CTAAAATCTGCTCCGTAATCAATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCC
66 CTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCC
* * * * *
64095977 GATAAATGGAGATAATATCTATATTTTTTAGTCTACTTCCTGCAACT
131 GATACATGGAGATAAGATCTGTAATTTTCAGTCTACTTCCTGCAACT
* * * * *
64096024 TCAAGAAGATAAGACTTGTACCTTCAACCTGTTCTCTTGCTACCTTAGAGAGATAAGGTTGGTGT
1 TCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGG
* *
64096089 CTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGTCATTTTCGATCTGCTCCATAGTC
66 CTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCC
*
64096154 GATACATAGAGATAAGATCTGTAATTTTCA
131 GATACATGGAGATAAGATCTGTAATTTTCA
64096184 CCGATGTCGC
Statistics
Matches: 294, Mismatches: 40, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
175 1 0.00
176 152 0.52
177 141 0.48
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (177 bp):
TCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGG
CTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCATAGCC
GATACATGGAGATAAGATCTGTAATTTTCAGTCTACTTCCTGCAACT
Found at i:64096181 original size:45 final size:45
Alignment explanation
Indices: 64096094--64096182 Score: 135
Period size: 45 Copynumber: 2.0 Consensus size: 45
64096084 GGTGTCTAAA
* *
64096094 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGTCATTTTCG
1 ATCTGCTCCATAGCCGATACATAGAGATAAGACTCGTAATTTTCG
*
64096139 ATCTGCTCCATAGTCGATACATAGAGATAAGA-TCTGTAATTTTC
1 ATCTGCTCCATAGCCGATACATAGAGATAAGACTC-GTAATTTTC
64096183 ACCGATGTCG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 2 0.05
45 38 0.95
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (45 bp):
ATCTGCTCCATAGCCGATACATAGAGATAAGACTCGTAATTTTCG
Found at i:64096304 original size:23 final size:22
Alignment explanation
Indices: 64096253--64096305 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
64096243 TATGTTTATG
*
64096253 CCAAATGATTAGAATGCTATGA
1 CCAAATGATTAGAATGCTATAA
*
64096275 CCGAAATGAATTAG-ATGCTCCTAA
1 CC-AAATG-ATTAGAATGCT-ATAA
64096299 CCAAATG
1 CCAAATG
64096306 TGTTATGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 2 0.08
23 15 0.58
24 9 0.35
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.25
Consensus pattern (22 bp):
CCAAATGATTAGAATGCTATAA
Found at i:64103530 original size:19 final size:20
Alignment explanation
Indices: 64103499--64103552 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
64103489 GTTCTTTTTG
* *
64103499 TGAAATTTAATGCACATG-A
1 TGAAATGTAATGCAAATGCA
*
64103518 TGCAATGTAATGCAAATGCA
1 TGAAATGTAATGCAAATGCA
64103538 TGAAATGT-ATGCAAA
1 TGAAATGTAATGCAAA
64103553 AATAAAGAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 22 0.73
20 8 0.27
ACGTcount: A:0.43, C:0.11, G:0.19, T:0.28
Consensus pattern (20 bp):
TGAAATGTAATGCAAATGCA
Found at i:64110563 original size:19 final size:19
Alignment explanation
Indices: 64110539--64110579 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
64110529 TATTTTAAAG
64110539 TTATTTAGGTAAATAAATC
1 TTATTTAGGTAAATAAATC
*
64110558 TTATTTAGGTAGATAAATC
1 TTATTTAGGTAAATAAATC
64110577 TTA
1 TTA
64110580 GAATAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.39, C:0.05, G:0.12, T:0.44
Consensus pattern (19 bp):
TTATTTAGGTAAATAAATC
Found at i:64113988 original size:41 final size:41
Alignment explanation
Indices: 64113959--64114037 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
64113949 TTTTATTTTT
*
64113959 TATTTTAGTAGTTCATTAGAATTAGGGAATTATTTTCCTTA
1 TATTTTAGTAGTTCATTAGAATAAGGGAATTATTTTCCTTA
* *
64114000 TGTTTTAGTAGTTTATTAGAATAAGGGAATTATTTTCC
1 TATTTTAGTAGTTCATTAGAATAAGGGAATTATTTTCC
64114038 CAATTAGGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.29, C:0.06, G:0.16, T:0.48
Consensus pattern (41 bp):
TATTTTAGTAGTTCATTAGAATAAGGGAATTATTTTCCTTA
Found at i:64120226 original size:9 final size:9
Alignment explanation
Indices: 64120212--64120239 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
64120202 TCTCTCACTC
64120212 TTGCCTTTA
1 TTGCCTTTA
64120221 TTGCCTTTA
1 TTGCCTTTA
64120230 TTGCCTTTA
1 TTGCCTTTA
64120239 T
1 T
64120240 CCTACTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.21, G:0.11, T:0.57
Consensus pattern (9 bp):
TTGCCTTTA
Found at i:64133640 original size:46 final size:46
Alignment explanation
Indices: 64133573--64133701 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
64133563 TGTAACCCGC
* * *
64133573 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
64133619 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
64133665 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
64133702 TGCTCAACCA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:64143581 original size:15 final size:15
Alignment explanation
Indices: 64143561--64143590 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
64143551 ATTATTCATT
*
64143561 AGTTGTGAAAATTAA
1 AGTTGTAAAAATTAA
64143576 AGTTGTAAAAATTAA
1 AGTTGTAAAAATTAA
64143591 CAAATATCAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (15 bp):
AGTTGTAAAAATTAA
Found at i:64144013 original size:32 final size:32
Alignment explanation
Indices: 64143977--64144041 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
64143967 TGTATGCATT
64143977 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
64144009 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
64144041 T
1 T
64144042 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:64145551 original size:26 final size:26
Alignment explanation
Indices: 64145522--64145574 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
64145512 TTTACAGTTT
64145522 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
64145548 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
64145574 T
1 T
64145575 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:64151722 original size:43 final size:43
Alignment explanation
Indices: 64151599--64151787 Score: 197
Period size: 43 Copynumber: 4.5 Consensus size: 43
64151589 TATCTCAAAT
* * * * * * *
64151599 ATGGTCTTACATGTTATCACATATCGATGCCATTATCCCAGAC
1 ATGGTCTTACACGTAATCACAAAACAATGCCAATGTCCCAGAC
* * * * *
64151642 AGGGTCTTACACGAAAT--C--AACGATGCTAATGTCCCAGAG
1 ATGGTCTTACACGTAATCACAAAACAATGCCAATGTCCCAGAC
* * *
64151681 ATGGTCTTGCACGTAATCAGAATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACAAAACAATGCCAATGTCCCAGAC
64151724 ATGGTCTTACACGTAATCACAAAACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACAAAACAATGCCAATGTCCCAGAC
* *
64151767 ATGGTCTTACATGTAACCACA
1 ATGGTCTTACACGTAATCACA
64151788 TCTCTGTAAC
Statistics
Matches: 120, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 30 0.25
41 1 0.01
43 89 0.74
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACAAAACAATGCCAATGTCCCAGAC
Found at i:64160671 original size:21 final size:21
Alignment explanation
Indices: 64160630--64160671 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
64160620 TTAGAGTTAT
* *
64160630 TAGAGTTTGACTGGGAAAAGA
1 TAGAGTTTAACTAGGAAAAGA
*
64160651 TAGAGTTTAACTAGGAGAAGA
1 TAGAGTTTAACTAGGAAAAGA
64160672 AACCCGATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.05, G:0.31, T:0.24
Consensus pattern (21 bp):
TAGAGTTTAACTAGGAAAAGA
Found at i:64163147 original size:25 final size:25
Alignment explanation
Indices: 64163119--64163166 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
64163109 TAAGTTAATC
64163119 AGAGTCTAAGTGGAA-AACTAAAAAT
1 AGAGTCTAAGTGGAAGAAC-AAAAAT
* *
64163144 AGAGTTTAATTGGAAGAACAAAA
1 AGAGTCTAAGTGGAAGAACAAAA
64163167 GTTGAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 17 0.85
26 3 0.15
ACGTcount: A:0.52, C:0.06, G:0.21, T:0.21
Consensus pattern (25 bp):
AGAGTCTAAGTGGAAGAACAAAAAT
Found at i:64164914 original size:9 final size:9
Alignment explanation
Indices: 64164902--64164937 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
64164892 AATAGGGAGA
64164902 AAAGAAAGG
1 AAAGAAAGG
*
64164911 AAAGAAAGA
1 AAAGAAAGG
64164920 AAAGAAA-G
1 AAAGAAAGG
64164928 AAAGAAAGG
1 AAAGAAAGG
64164937 A
1 A
64164938 GAAACTAGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
8 7 0.29
9 17 0.71
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (9 bp):
AAAGAAAGG
Found at i:64164917 original size:4 final size:4
Alignment explanation
Indices: 64164902--64164935 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
64164892 AATAGGGAGA
64164902 AAAG AAAGG AAAG AAAG AAAAG AAAG AAAG AAAG
1 AAAG AAA-G AAAG AAAG -AAAG AAAG AAAG AAAG
64164936 GAGAAACTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:64164920 original size:13 final size:13
Alignment explanation
Indices: 64164902--64164937 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
64164892 AATAGGGAGA
64164902 AAAGAAAGGAAAG
1 AAAGAAAGGAAAG
*
64164915 AAAGAAAAGAAAG
1 AAAGAAAGGAAAG
64164928 AAAGAAAGGA
1 AAAGAAAGGA
64164938 GAAACTAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (13 bp):
AAAGAAAGGAAAG
Found at i:64165214 original size:30 final size:28
Alignment explanation
Indices: 64165160--64165216 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 28
64165150 AATTGTGGAA
64165160 TAAATTGTAAAATTTGAATATTAGGGAC
1 TAAATTGTAAAATTTGAATATTAGGGAC
64165188 TAAATTGTGAAAATTTTGAA-ATTTAGGGA
1 TAAATTGT-AAAA-TTTGAATA-TTAGGGA
64165217 TTTAAGTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 8 0.31
29 5 0.19
30 13 0.50
ACGTcount: A:0.42, C:0.02, G:0.19, T:0.37
Consensus pattern (28 bp):
TAAATTGTAAAATTTGAATATTAGGGAC
Found at i:64169363 original size:27 final size:28
Alignment explanation
Indices: 64169310--64169365 Score: 96
Period size: 27 Copynumber: 2.0 Consensus size: 28
64169300 TGTGATGAAT
64169310 GTGAAAGTGTATATATATGTGATAAGGCC
1 GTGAAAGTG-ATATATATGTGATAAGGCC
64169339 GTGAAAGTG-TATATATGTGATAAGGCC
1 GTGAAAGTGATATATATGTGATAAGGCC
64169366 TAATGGCCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 18 0.67
29 9 0.33
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (28 bp):
GTGAAAGTGATATATATGTGATAAGGCC
Found at i:64169379 original size:49 final size:48
Alignment explanation
Indices: 64169339--64169699 Score: 496
Period size: 49 Copynumber: 7.5 Consensus size: 48
64169329 TGATAAGGCC
64169339 GTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
64169386 GTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
64169435 GTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64169484 GTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * *
64169531 GTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGAAT
1 GTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64169580 GTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * * *
64169627 GTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGGAT
1 GTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
64169676 GTGAAAGTG-TATAAATGTGATAAG
1 GTGAAAGTGATATATATGTGATAAG
64169700 TCCCGAAGGG
Statistics
Matches: 280, Mismatches: 28, Indels: 12
0.88 0.09 0.04
Matches are distributed among these distances:
47 106 0.38
49 174 0.62
ACGTcount: A:0.31, C:0.09, G:0.32, T:0.29
Consensus pattern (48 bp):
GTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:64169514 original size:96 final size:96
Alignment explanation
Indices: 64169339--64169699 Score: 546
Period size: 96 Copynumber: 3.8 Consensus size: 96
64169329 TGATAAGGCC
* * * * *
64169339 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTGTATATATATGTGACAGGGCCGAATGGCCAACGTGATGAATGTGAAAGTG--TATAT
*
64169402 ATGTGATAGGGCCTAATGGCCGATGTGATGAAT
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * *
64169435 GTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTGTATATATATGTGACAGGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATAT
64169500 GTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
64169531 GTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTGTATATATATGTGACAGGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATAT
64169596 GTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * *
64169627 GTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 GTGAAAGTGTATATATATGTGACAGGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATAT
64169692 GTGATAAG
66 GTGATAAG
64169700 TCCCGAAGGG
Statistics
Matches: 253, Mismatches: 10, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
96 207 0.82
98 46 0.18
ACGTcount: A:0.31, C:0.09, G:0.32, T:0.29
Consensus pattern (96 bp):
GTGAAAGTGTATATATATGTGACAGGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:64169593 original size:145 final size:143
Alignment explanation
Indices: 64169339--64169695 Score: 529
Period size: 145 Copynumber: 2.5 Consensus size: 143
64169329 TGATAAGGCC
64169339 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
* * * * *
64169404 GTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATG
66 GTGACAGGGCCGAATGGCCAACGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG
64169469 GCCGATGTGATGAAT
129 GCCGATGTGATGAAT
*
64169484 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
*
64169549 GTGACAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
66 GTGACAGGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
64169614 CGATGTGATGAAT
131 CGATGTGATGAAT
* * * * * * * *
64169627 GTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
64169690 ATGTGA
64 ATGTGA
64169696 TAAGTCCCGA
Statistics
Matches: 194, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
143 51 0.26
144 1 0.01
145 142 0.73
ACGTcount: A:0.31, C:0.09, G:0.32, T:0.29
Consensus pattern (143 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
GTGACAGGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
CGATGTGATGAAT
Found at i:64175898 original size:13 final size:13
Alignment explanation
Indices: 64175888--64175912 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64175878 GAAAAGAAGG
64175888 GAAAGAAAGAAAA
1 GAAAGAAAGAAAA
64175901 GAAAGAAAGAAA
1 GAAAGAAAGAAA
64175913 GGAGAAACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
GAAAGAAAGAAAA
Found at i:64181384 original size:25 final size:25
Alignment explanation
Indices: 64181336--64181384 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
64181326 CTAGGTTAAT
* *
64181336 TAGAGTTTAAGTGGGAAACTAAAAA
1 TAGAGTTTAACTGGGAAACGAAAAA
64181361 TAGAGTTTAACTGGGATAA-GAAAA
1 TAGAGTTTAACTGGGA-AACGAAAA
64181385 GCTGAAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.47, C:0.04, G:0.24, T:0.24
Consensus pattern (25 bp):
TAGAGTTTAACTGGGAAACGAAAAA
Found at i:64189375 original size:29 final size:30
Alignment explanation
Indices: 64189320--64189377 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
64189310 GCCTTTTGAA
* *
64189320 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCACCAAATTTTT
64189350 AATATTTAC-AAAAGA-GCAACCAAATTTT
1 AATATTTACAAAAAGAGGC-ACCAAATTTT
64189378 AAAAATAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 2 0.08
29 14 0.56
30 9 0.36
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.33
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAATTTTT
Found at i:64192479 original size:26 final size:26
Alignment explanation
Indices: 64192448--64192555 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
64192438 TGAAATGCCC
*
64192448 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
64192474 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
64192500 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
64192526 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
64192552 ATCA
1 ATCA
64192556 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:64202946 original size:17 final size:17
Alignment explanation
Indices: 64202880--64202948 Score: 52
Period size: 17 Copynumber: 4.0 Consensus size: 17
64202870 TTTTTTTCAA
*
64202880 AATA-TTTTTTGTTGTAG
1 AATACTTTTCTGTTG-AG
* *
64202897 AATATTTTTCGGTTGAG
1 AATACTTTTCTGTTGAG
**
64202914 AATACTCTGACTGTTGCAG
1 AATACT-TTTCTGTTG-AG
64202933 AATA-TTTTCTGTTGAG
1 AATACTTTTCTGTTGAG
64202949 GAAAATCCTC
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
16 2 0.05
17 18 0.44
18 15 0.37
19 6 0.15
ACGTcount: A:0.25, C:0.09, G:0.20, T:0.46
Consensus pattern (17 bp):
AATACTTTTCTGTTGAG
Done.