Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 192 of 344
Found at i:64204921 original size:12 final size:10
Alignment explanation
Indices: 64204892--64204917 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
64204882 TTTTTCTATA
64204892 ATTTTTATTG
1 ATTTTTATTG
64204902 ATTTTTATTG
1 ATTTTTATTG
64204912 ATTTTT
1 ATTTTT
64204918 TTATCATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.08, T:0.73
Consensus pattern (10 bp):
ATTTTTATTG
Found at i:64205078 original size:18 final size:18
Alignment explanation
Indices: 64205057--64205109 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
64205047 AAAAAATTCT
64205057 AATTTATATTTTTATTAA
1 AATTTATATTTTTATTAA
*
64205075 AATTTAATAATTTTT-CTAA
1 AATTT-AT-ATTTTTATTAA
*
64205094 AATTTAT-TATTTATTA
1 AATTTATATTTTTATTA
64205110 TATTTTCTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
16 4 0.14
17 2 0.07
18 7 0.24
19 10 0.34
20 6 0.21
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (18 bp):
AATTTATATTTTTATTAA
Found at i:64219037 original size:78 final size:78
Alignment explanation
Indices: 64218918--64219075 Score: 316
Period size: 78 Copynumber: 2.0 Consensus size: 78
64218908 CAATAGTGTA
64218918 TTAACTATATAAAAATAGCCTATATATTGTATACAAAAATTTGAAGCAAATTAACAAATTTGACT
1 TTAACTATATAAAAATAGCCTATATATTGTATACAAAAATTTGAAGCAAATTAACAAATTTGACT
64218983 TAACAATATAAGT
66 TAACAATATAAGT
64218996 TTAACTATATAAAAATAGCCTATATATTGTATACAAAAATTTGAAGCAAATTAACAAATTTGACT
1 TTAACTATATAAAAATAGCCTATATATTGTATACAAAAATTTGAAGCAAATTAACAAATTTGACT
64219061 TAACAATATAAGT
66 TAACAATATAAGT
64219074 TT
1 TT
64219076 TATCTTGATT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 80 1.00
ACGTcount: A:0.48, C:0.10, G:0.08, T:0.34
Consensus pattern (78 bp):
TTAACTATATAAAAATAGCCTATATATTGTATACAAAAATTTGAAGCAAATTAACAAATTTGACT
TAACAATATAAGT
Found at i:64222453 original size:17 final size:18
Alignment explanation
Indices: 64222433--64222466 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64222423 AAAATGGAAA
64222433 TGAAAAGC-TAATGTTTT
1 TGAAAAGCTTAATGTTTT
*
64222450 TGAAAATCTTAATGTTT
1 TGAAAAGCTTAATGTTT
64222467 GAAATTATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (18 bp):
TGAAAAGCTTAATGTTTT
Found at i:64224492 original size:29 final size:28
Alignment explanation
Indices: 64224455--64224716 Score: 184
Period size: 29 Copynumber: 9.3 Consensus size: 28
64224445 AACAAAGTTT
* *
64224455 GCCAC-AAGGCATTCATTTAACTGATATA
1 GCCACAAAGGCATTC-TTTAACAGAGATA
* *
64224483 GCCACAAAGGTACGTT-TTTAACAGAAATA
1 GCCACAAAGG--CATTCTTTAACAGAGATA
*
64224512 GCCACAAAGGCATCCTTTTAACAGAGATA
1 GCCACAAAGGCATTC-TTTAACAGAGATA
* * *
64224541 GCCACAAATGC-TTCTTTATAGTAGAGATC
1 GCCACAAAGGCATTCTTTA-A-CAGAGATA
*
64224570 GCCACAAAGGC-TTCCATTTAACAAAGATA
1 GCCACAAAGGCATT-C-TTTAACAGAGATA
*
64224599 GCCACAAAGGCA-TCTTT-TCAGAGATA
1 GCCACAAAGGCATTCTTTAACAGAGATA
* *
64224625 GCCATAAAGGC-TTCCTTATAACAAAGATA
1 GCCACAAAGGCATT-CTT-TAACAGAGATA
* ** * *
64224654 ACCACAAAGGTGTCCTTT--CAGAGAGA
1 GCCACAAAGGCATTCTTTAACAGAGATA
*
64224680 GCCACAAAGGC-TTCCTTATAATAGAGATA
1 GCCACAAAGGCATT-CTT-TAACAGAGATA
64224709 GCCACAAA
1 GCCACAAA
64224717 TGCTCACTTA
Statistics
Matches: 185, Mismatches: 30, Indels: 37
0.73 0.12 0.15
Matches are distributed among these distances:
25 1 0.01
26 36 0.19
27 13 0.07
28 11 0.06
29 114 0.62
30 3 0.02
31 7 0.04
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (28 bp):
GCCACAAAGGCATTCTTTAACAGAGATA
Found at i:64224647 original size:55 final size:55
Alignment explanation
Indices: 64224504--64224716 Score: 239
Period size: 55 Copynumber: 3.8 Consensus size: 55
64224494 ACGTTTTTAA
* * * * * *
64224504 CAGAAATAGCCACAAAGGCATCCTTTTAACAGAGATAGCCACAAATGCTTCTTTAT
1 CAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAGCCACAAAGGCATCTTT-T
* *
64224560 AGTAGAGATCGCCACAAAGGCTTCCATT-TAACAAAGATAGCCACAAAGGCATCTTTT
1 --CAGAGATAGCCACAAAGGCTTCC-TTATAACAAAGATAGCCACAAAGGCATCTTTT
* * ** *
64224617 CAGAGATAGCCATAAAGGCTTCCTTATAACAAAGATAACCACAAAGGTGTCCTTT
1 CAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAGCCACAAAGGCATCTTTT
* * *
64224672 CAGAGAGAGCCACAAAGGCTTCCTTATAATAGAGATAGCCACAAA
1 CAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAGCCACAAA
64224717 TGCTCACTTA
Statistics
Matches: 134, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
54 2 0.01
55 85 0.63
57 1 0.01
58 44 0.33
59 2 0.01
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.22
Consensus pattern (55 bp):
CAGAGATAGCCACAAAGGCTTCCTTATAACAAAGATAGCCACAAAGGCATCTTTT
Found at i:64224727 original size:84 final size:85
Alignment explanation
Indices: 64224511--64224728 Score: 225
Period size: 84 Copynumber: 2.6 Consensus size: 85
64224501 TAACAGAAAT
* * ** * **
64224511 AGCCACAAAGGCATCCTTTTAACAGAGATAGCCACAAATGCTTCTTTATAGTAGAGATCGCCACA
1 AGCCACAAAGGCATCC-TTTAATAGAGATAGCCACAAATGCTTCCTTATAACAAAGATAACCACA
*
64224576 AAGGCTTCCATTTAACAAAGAT
65 AAGGCTTCCATTT-ACAAAGAG
* *
64224598 AGCCACAAAGGCAT-CTTT--TCAGAGATAGCCATAAAGGCTTCCTTATAACAAAGATAACCACA
1 AGCCACAAAGGCATCCTTTAAT-AGAGATAGCCACAAATGCTTCCTTATAACAAAGATAACCACA
*
64224660 AAGG-TGTCC-TTT-CAGAGAG
65 AAGGCT-TCCATTTACAAAGAG
*
64224679 AGCCACAAAGGCTTCCTTATAATAGAGATAGCCACAAATGC-TCACTTATA
1 AGCCACAAAGGCATCCTT-TAATAGAGATAGCCACAAATGCTTC-CTTATA
64224729 CGGAAATTGG
Statistics
Matches: 110, Mismatches: 14, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
81 18 0.16
82 3 0.03
83 7 0.06
84 63 0.57
85 4 0.04
86 1 0.01
87 14 0.13
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (85 bp):
AGCCACAAAGGCATCCTTTAATAGAGATAGCCACAAATGCTTCCTTATAACAAAGATAACCACAA
AGGCTTCCATTTACAAAGAG
Found at i:64229305 original size:65 final size:65
Alignment explanation
Indices: 64229225--64229354 Score: 251
Period size: 65 Copynumber: 2.0 Consensus size: 65
64229215 TCCTTATATC
*
64229225 CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCGTTACACTTCATACT
1 CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCATTACACTTCATACT
64229290 CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCATTACACTTCATACT
1 CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCATTACACTTCATACT
64229355 TTGAATATAT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.36, C:0.20, G:0.02, T:0.42
Consensus pattern (65 bp):
CATCATATTAATGCCATTTTCATAATTAAAATCATATTCCATTATATATCATTACACTTCATACT
Found at i:64230973 original size:26 final size:26
Alignment explanation
Indices: 64230944--64231003 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
64230934 TCCCTTTGAA
* * *
64230944 TCATTCGATATTTCGCACACTAAGTG
1 TCATTCAATATCTCACACACTAAGTG
64230970 TCATTCTCAATATCTCACACACTAAGTG
1 TCA-T-TCAATATCTCACACACTAAGTG
*
64230998 CCATTC
1 TCATTC
64231004 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.33
Consensus pattern (26 bp):
TCATTCAATATCTCACACACTAAGTG
Found at i:64231019 original size:28 final size:28
Alignment explanation
Indices: 64230951--64231029 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
64230941 GAATCATTCG
*
64230951 ATATTTCGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
64230979 ATATCTCACACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
64231007 ATATTTCGTACACTGAGTGCCAT
1 ATATTTCGCACACTAAGTGCCAT
64231030 ATTTGATTGC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:64235168 original size:11 final size:10
Alignment explanation
Indices: 64235136--64235191 Score: 62
Period size: 11 Copynumber: 5.6 Consensus size: 10
64235126 CATGAGATTT
64235136 TGATAT-ACA
1 TGATATGACA
*
64235145 TGATTTGACA
1 TGATATGACA
64235155 TGATATGCACA
1 TGATATG-ACA
*
64235166 TGATATG-TA
1 TGATATGACA
64235175 TGATATGCACA
1 TGATATG-ACA
64235186 TGATAT
1 TGATAT
64235192 AGTCATATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
9 13 0.33
10 9 0.23
11 17 0.44
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (10 bp):
TGATATGACA
Found at i:64235179 original size:20 final size:22
Alignment explanation
Indices: 64235153--64235204 Score: 83
Period size: 20 Copynumber: 2.5 Consensus size: 22
64235143 CATGATTTGA
64235153 CATGATATGCACATGATAT-GT
1 CATGATATGCACATGATATAGT
64235174 -ATGATATGCACATGATATAGT
1 CATGATATGCACATGATATAGT
64235195 CAT-ATATGCA
1 CATGATATGCA
64235205 TGGGTTGGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 18 0.62
21 9 0.31
22 2 0.07
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (22 bp):
CATGATATGCACATGATATAGT
Found at i:64235268 original size:24 final size:25
Alignment explanation
Indices: 64235237--64235305 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
64235227 GAGGAAGTGA
64235237 AAAAGGGCTTT-CCCCAGTTTACCG
1 AAAAGGGCTTTCCCCCAGTTTACCG
64235261 AAAAGGGCTTTCCCCCAGTTTACCG
1 AAAAGGGCTTTCCCCCAGTTTACCG
* *
64235286 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTCCCCCAGTT
64235306 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
24 11 0.26
25 31 0.74
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTCCCCCAGTTTACCG
Found at i:64235558 original size:30 final size:31
Alignment explanation
Indices: 64235524--64235636 Score: 196
Period size: 30 Copynumber: 3.7 Consensus size: 31
64235514 CGCTTACAGT
64235524 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
64235554 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
64235584 AAAGGCTTCGGCCCGGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
64235615 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
64235637 TCGAGACTGA
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
30 46 0.57
31 34 0.43
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:64241430 original size:103 final size:103
Alignment explanation
Indices: 64241302--64241508 Score: 389
Period size: 103 Copynumber: 2.0 Consensus size: 103
64241292 AGGGGATCAC
64241302 ATAGTCATTCTTAGTGAGTCACACACAAATATAAATATCTCAAAATATAGAGTTCCTTTACTTGA
1 ATAGTCATTCTTAGTGAGTCACACACAAATATAAATATCTCAAAATATAGAGTTCCTTTACTTGA
*
64241367 TCTGTTTCTTTTACATGGGAATAGACTTATTAAGCTTT
66 TCTGTTTCTTTTACATGGGAATAGACTCATTAAGCTTT
64241405 ATAGTCATT-TTGAGTGAGTCACACACAAATATAAATATCTCAAAATATAGAGTTCCTTTACTTG
1 ATAGTCATTCTT-AGTGAGTCACACACAAATATAAATATCTCAAAATATAGAGTTCCTTTACTTG
64241469 ATCTGTTTCTTTTACATGGGAATAGACTCATTAAGCTTT
65 ATCTGTTTCTTTTACATGGGAATAGACTCATTAAGCTTT
64241508 A
1 A
64241509 ATTTCATATC
Statistics
Matches: 102, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
102 2 0.02
103 100 0.98
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.38
Consensus pattern (103 bp):
ATAGTCATTCTTAGTGAGTCACACACAAATATAAATATCTCAAAATATAGAGTTCCTTTACTTGA
TCTGTTTCTTTTACATGGGAATAGACTCATTAAGCTTT
Found at i:64247511 original size:28 final size:28
Alignment explanation
Indices: 64247448--64247598 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
64247438 ATATTAAGTC
*
64247448 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
64247475 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
64247503 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
64247531 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
64247559 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
64247588 CGCACACTTAG
1 CGCACACTTAG
64247599 CGCCAATCTC
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 22 0.19
28 77 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:64249675 original size:46 final size:46
Alignment explanation
Indices: 64249505--64249680 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
64249495 TGTAACCCGC
* * * *
64249505 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCAT
*
64249551 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GA-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACATTCGC-A--T
* *** *
64249597 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCAT
*
64249644 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGA
64249681 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 68 0.62
47 30 0.28
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCAT
Found at i:64255536 original size:28 final size:27
Alignment explanation
Indices: 64255479--64255630 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
64255469 TAAATTGTGC
*
64255479 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
64255506 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
64255534 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
64255561 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
64255589 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
64255616 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64255631 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:64255543 original size:55 final size:55
Alignment explanation
Indices: 64255479--64255630 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
64255469 TAAATTGTGC
*
64255479 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
64255534 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
64255589 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
64255631 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:64263567 original size:28 final size:27
Alignment explanation
Indices: 64263510--64263661 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
64263500 TAAATTGTGC
*
64263510 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
64263537 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
64263565 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
64263592 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
64263620 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
64263647 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64263662 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:64263574 original size:55 final size:55
Alignment explanation
Indices: 64263510--64263661 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
64263500 TAAATTGTGC
*
64263510 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
64263565 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
64263620 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
64263662 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:64266819 original size:68 final size:68
Alignment explanation
Indices: 64266652--64266827 Score: 184
Period size: 68 Copynumber: 2.6 Consensus size: 68
64266642 TAGTACCACC
* * * *
64266652 CATGTGACCTAGC--CA-ATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGTGACCTAGCTACACATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAAT
64266714 CACA
65 CACA
** * *
64266718 CATGTGACCTAGCTACATTTATCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGT
1 CATGTGACCTAGCTACACATATATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGA
64266780 ATCACA
63 ATCACA
64266786 CATGTGACCTAGCTACTACATAGTATCTCGTAGCTCTCTTGT
1 CATGTGACCTAGCTAC-ACATA-TATCTCGTAGCTCTCTTGT
64266828 ACACATGATG
Statistics
Matches: 92, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
66 13 0.14
68 39 0.42
69 8 0.09
70 6 0.07
71 26 0.28
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (68 bp):
CATGTGACCTAGCTACACATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATC
ACA
Found at i:64273547 original size:52 final size:52
Alignment explanation
Indices: 64273482--64273605 Score: 196
Period size: 52 Copynumber: 2.4 Consensus size: 52
64273472 CATGAGAGCT
64273482 AATCCAACCGATAACACGCCCCGGCACTAAGTGCCTAACCCATAGGCTATAC
1 AATCCAACCGATAACACGCCCCGGCACTAAGTGCCTAACCCATAGGCTATAC
**
64273534 AATCCAATTGATAACACGCCCCGGCACTAAGTGCCTAACCCATAGGCTATAC
1 AATCCAACCGATAACACGCCCCGGCACTAAGTGCCTAACCCATAGGCTATAC
* *
64273586 -ATCCACCCCCATAACACGCC
1 AATCCA-ACCGATAACACGCC
64273606 AGAACAGGAT
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
51 5 0.08
52 60 0.92
ACGTcount: A:0.32, C:0.38, G:0.14, T:0.16
Consensus pattern (52 bp):
AATCCAACCGATAACACGCCCCGGCACTAAGTGCCTAACCCATAGGCTATAC
Found at i:64275213 original size:53 final size:53
Alignment explanation
Indices: 64275150--64275265 Score: 232
Period size: 53 Copynumber: 2.2 Consensus size: 53
64275140 TTAGGTTGTT
64275150 ACACGGTTTGAGGACATGACTGTGTGGCTTTGCATCAAACGGCCCCAAGCTTC
1 ACACGGTTTGAGGACATGACTGTGTGGCTTTGCATCAAACGGCCCCAAGCTTC
64275203 ACACGGTTTGAGGACATGACTGTGTGGCTTTGCATCAAACGGCCCCAAGCTTC
1 ACACGGTTTGAGGACATGACTGTGTGGCTTTGCATCAAACGGCCCCAAGCTTC
64275256 ACACGGTTTG
1 ACACGGTTTG
64275266 GCCACACGAC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 63 1.00
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (53 bp):
ACACGGTTTGAGGACATGACTGTGTGGCTTTGCATCAAACGGCCCCAAGCTTC
Found at i:64275281 original size:53 final size:53
Alignment explanation
Indices: 64275150--64275281 Score: 194
Period size: 53 Copynumber: 2.5 Consensus size: 53
64275140 TTAGGTTGTT
* * *
64275150 ACACGGTTTGAGGACATGACTGTGTGGCTTTGCATCAAACGGCCCCAAGCTTC
1 ACACGGTTTGAGCACACGACCGTGTGGCTTTGCATCAAACGGCCCCAAGCTTC
* * *
64275203 ACACGGTTTGAGGACATGACTGTGTGGCTTTGCATCAAACGGCCCCAAGCTTC
1 ACACGGTTTGAGCACACGACCGTGTGGCTTTGCATCAAACGGCCCCAAGCTTC
64275256 ACACGGTTTG-GCCACACGACCGTGTG
1 ACACGGTTTGAG-CACACGACCGTGTG
64275282 ACCCTTGATT
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
52 1 0.01
53 74 0.99
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (53 bp):
ACACGGTTTGAGCACACGACCGTGTGGCTTTGCATCAAACGGCCCCAAGCTTC
Found at i:64275584 original size:17 final size:17
Alignment explanation
Indices: 64275562--64275596 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
64275552 TACGGTTTAG
64275562 TCGATTATAGGAATAAA
1 TCGATTATAGGAATAAA
64275579 TCGATTATAGGAATAAA
1 TCGATTATAGGAATAAA
64275596 T
1 T
64275597 GTAGTGTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.06, G:0.17, T:0.31
Consensus pattern (17 bp):
TCGATTATAGGAATAAA
Found at i:64280409 original size:37 final size:37
Alignment explanation
Indices: 64280359--64280437 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
64280349 TTATTACGAA
* * *
64280359 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
64280396 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
64280433 GTCTT
1 GTCTT
64280438 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:64280730 original size:49 final size:47
Alignment explanation
Indices: 64280558--64280934 Score: 601
Period size: 47 Copynumber: 7.9 Consensus size: 47
64280548 CTTCGGGACT
* * * * * *
64280558 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
64280605 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
64280652 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
64280699 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
64280748 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
64280797 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
64280846 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
64280893 TATCACATATATACACTTTCACATTCATCACATCGGTCATTA
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTA
64280935 CGCCATACTA
Statistics
Matches: 316, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 172 0.54
49 144 0.46
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:64283638 original size:16 final size:16
Alignment explanation
Indices: 64283617--64283647 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64283607 ATTTGTTTTC
*
64283617 ATTTGCATCATATATA
1 ATTTGCATCAAATATA
64283633 ATTTGCATCAAATAT
1 ATTTGCATCAAATAT
64283648 CAAATAACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.13, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTTGCATCAAATATA
Found at i:64283933 original size:56 final size:56
Alignment explanation
Indices: 64283865--64284054 Score: 281
Period size: 56 Copynumber: 3.4 Consensus size: 56
64283855 CCAGACCGCA
* * * * * *
64283865 TCTTACTTGCACACACATATCGGAGTCACATATTGATGCCAATGTATTAAATGTGG
1 TCTTACTCGCACACATATATCGGAGTCACATATCGCTGCCAACGTATTAAACGTGG
*
64283921 TCTTACTCGCACACATATATCAGAGTCACATATCGCTGCCAACGTATTAAACGTGG
1 TCTTACTCGCACACATATATCGGAGTCACATATCGCTGCCAACGTATTAAACGTGG
* * *
64283977 TCTTACTCGCACACATATATCGAAGTCACATATCGCTACCAACATATTAAACGTGG
1 TCTTACTCGCACACATATATCGGAGTCACATATCGCTGCCAACGTATTAAACGTGG
*
64284033 TCTTACTCACACACATATATCG
1 TCTTACTCGCACACATATATCG
64284055 ATGCCATGGT
Statistics
Matches: 122, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 122 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (56 bp):
TCTTACTCGCACACATATATCGGAGTCACATATCGCTGCCAACGTATTAAACGTGG
Found at i:64291772 original size:43 final size:41
Alignment explanation
Indices: 64291670--64291803 Score: 153
Period size: 43 Copynumber: 3.1 Consensus size: 41
64291660 TGACATTAGG
**
64291670 GTTACTGAGATTATGTGTAAGACCATATCTGGGATATGGCATC
1 GTTAC-GAGATTACATGTAAGACCATATCT-GGATATGGCATC
* * *
64291713 GATATGAGACTT-CATGTAAGACCATAGCTGGACTATTGGCATC
1 GTTACGAGA-TTACATGTAAGACCATATCTGGA-TA-TGGCATC
*
64291756 GTTACGAGATTACATGTAAGACCATATCTGAGATATGGCATT
1 GTTACGAGATTACATGTAAGACCATATCTG-GATATGGCATC
64291798 GTTACG
1 GTTACG
64291804 GTACTGTGTG
Statistics
Matches: 77, Mismatches: 9, Indels: 11
0.79 0.09 0.11
Matches are distributed among these distances:
41 3 0.04
42 34 0.44
43 38 0.49
44 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31
Consensus pattern (41 bp):
GTTACGAGATTACATGTAAGACCATATCTGGATATGGCATC
Found at i:64297204 original size:27 final size:27
Alignment explanation
Indices: 64297169--64297347 Score: 184
Period size: 27 Copynumber: 6.6 Consensus size: 27
64297159 TTAAATTGTA
64297169 TAGCACTAAGTGTGCGATATGACTATG
1 TAGCACTAAGTGTGCGATATGACTATG
* * *
64297196 TTGCACTAAGTGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCGATATGACTATG
*
64297223 -ATGCACTAAGTGTGCGA-ATTGACCATG
1 TA-GCACTAAGTGTGCGATA-TGACTATG
** *
64297250 CGGCACTAAGTGTGCGAGTTTGACTATG
1 TAGCACTAAGTGTGCGA-TATGACTATG
* * *
64297278 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGATATGACTATG
* *
64297305 TAGCACTAAGTGTGCGAGT-TGATTATA
1 TAGCACTAAGTGTGCGA-TATGACTATG
*
64297332 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
64297348 GACTCAATAT
Statistics
Matches: 130, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.01
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGATATGACTATG
Found at i:64297285 original size:82 final size:81
Alignment explanation
Indices: 64297171--64297326 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
64297161 AAATTGTATA
* *
64297171 GCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
64297235 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
64297252 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
64297317 TGCGAGTTGA
65 TGCGAATTGA
64297327 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:64297338 original size:82 final size:81
Alignment explanation
Indices: 64297167--64297347 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
64297157 TATTAAATTG
* *
64297167 TATAGCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
64297232 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
*** * ** *
64297248 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TATAGCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
64297312 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
*
64297330 TATAGCACTGAGTGTGCG
1 TATAGCACTAAGTGTGCG
64297348 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:64305772 original size:26 final size:26
Alignment explanation
Indices: 64305736--64305786 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
64305726 TATTTGAGTG
64305736 TGTAGGGTGTCATTTTAGGTTAAAGT
1 TGTAGGGTGTCATTTTAGGTTAAAGT
64305762 TGTAGGGTGTCATTTTAGGTTAAAG
1 TGTAGGGTGTCATTTTAGGTTAAAG
64305787 AACACAAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.04, G:0.31, T:0.41
Consensus pattern (26 bp):
TGTAGGGTGTCATTTTAGGTTAAAGT
Found at i:64307917 original size:21 final size:21
Alignment explanation
Indices: 64307893--64307947 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
64307883 CTTATAAAAT
64307893 TTTATTATATATACATTTTAC
1 TTTATTATATATACATTTTAC
**
64307914 TTTA-TATATTATTTATTTTAC
1 TTTATTATA-TATACATTTTAC
*
64307935 TATATTTATATAT
1 TTTA-TTATATAT
64307948 GTAAATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 4 0.14
21 17 0.61
22 3 0.11
23 4 0.14
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTATTATATATACATTTTAC
Found at i:64307982 original size:41 final size:40
Alignment explanation
Indices: 64307842--64307982 Score: 110
Period size: 41 Copynumber: 3.4 Consensus size: 40
64307832 AAAAATAATG
*
64307842 TATATTATTTTTATTTATATATTATATTATTATATACGTTTCT
1 TATATTATTTTTATTTATATATTATATTATTATATA---TTAT
* * * *
64307885 TATA-AAATTTTA-TTATATATACATTTTACTTTATATATTAT
1 TATATTATTTTTATTTATATAT-TATATTA--TTATATATTAT
* *
64307926 T-TATT-TTACTATATTTATATATGTAAATTATTATATATTAT
1 TATATTATT--TTTATTTATATAT-TATATTATTATATATTAT
64307967 TATATTATTTTTATTT
1 TATATTATTTTTATTT
64307983 TTAACTATTT
Statistics
Matches: 76, Mismatches: 13, Indels: 20
0.70 0.12 0.18
Matches are distributed among these distances:
40 3 0.04
41 30 0.39
42 18 0.24
43 18 0.24
44 7 0.09
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (40 bp):
TATATTATTTTTATTTATATATTATATTATTATATATTAT
Found at i:64311165 original size:22 final size:22
Alignment explanation
Indices: 64311137--64311258 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
64311127 TTCCACATCC
64311137 ATCACATTGGCCATTCGACCTT
1 ATCACATTGGCCATTCGACCTT
** * *
64311159 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGACCTT
*
64311183 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGACCTT
* * *
64311206 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGACCTT
*
64311230 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGACCTT
64311253 ATCACA
1 ATCACA
64311259 CATACACATG
Statistics
Matches: 71, Mismatches: 17, Indels: 24
0.63 0.15 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 13 0.18
25 20 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGACCTT
Found at i:64311181 original size:47 final size:47
Alignment explanation
Indices: 64311109--64311593 Score: 717
Period size: 47 Copynumber: 10.3 Consensus size: 47
64311099 CCCTTCGGGA
* * * *
64311109 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGAC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
64311156 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
64311203 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
64311250 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
64311297 CTTATCACACATACT-CATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATA-TACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
64311344 CTTATCTCATATATGCATGTTCACATTCATCACTTTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
64311391 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
64311438 CTTATCACACATACT-GATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATA-TACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
64311485 CATATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
64311532 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
64311579 CTTATCACATATATA
1 CTTATCACATATATA
64311594 TATACACTTT
Statistics
Matches: 401, Mismatches: 32, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
46 3 0.01
47 398 0.99
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:64311363 original size:141 final size:141
Alignment explanation
Indices: 64311130--64311587 Score: 830
Period size: 141 Copynumber: 3.2 Consensus size: 141
64311120 TATACACTTC
* * *
64311130 CACATCCATCACATTGGCCATTCGACCTTATCACATATA-TACACT-TTCACATTCATCACATTG
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACT-CA-TGTTCACATTCATCACATTG
64311193 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
64 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
64311258 ACATACACATGTT
129 ACATACACATGTT
64311271 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACTCATGTTCACATTCATCACATTGGC
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACTCATGTTCACATTCATCACATTGGC
*
64311336 CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACTTTGGCCATTCGGCCTTATCACAC
66 CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
64311401 ATACACATGTT
131 ATACACATGTT
*
64311412 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACTGATGTTCACATTCATCACATTGGC
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACTCATGTTCACATTCATCACATTGGC
*
64311477 CATTCGGCCATATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
66 CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
64311542 ATACACATGTT
131 ATACACATGTT
64311553 CACATTCATCACATTGGCCATTCGGCCTTATCACA
1 CACATTCATCACATTGGCCATTCGGCCTTATCACA
64311588 TATATATATA
Statistics
Matches: 308, Mismatches: 7, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
140 1 0.00
141 306 0.99
142 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.32
Consensus pattern (141 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACACATACTCATGTTCACATTCATCACATTGGC
CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
ATACACATGTT
Found at i:64312768 original size:56 final size:56
Alignment explanation
Indices: 64312701--64312820 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
64312691 TATTAGTTTA
64312701 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
64312757 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
64312813 TTGCCCAT
1 TTGCCCAT
64312821 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:64323647 original size:44 final size:44
Alignment explanation
Indices: 64323593--64324165 Score: 722
Period size: 44 Copynumber: 13.0 Consensus size: 44
64323583 GATAGCTAAA
* * * *
64323593 TTGGCGTCTCTGTATTGTCAGAGAGCAAATAGAAAATAGCAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
*
64323637 TTGGCGTCTCTGTATTGACAGAAAGCAGATCGAAGAT-GACAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAG-CAGAT
* * *
64323681 TTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAAAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
* *
64323725 TTGGTGTCTCTGTGTTGACAGAGAGCAGATCGAAGAT-GACAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAG-CAGAT
* * *
64323769 TTGGCGTCTTTGTATTGTCAGAGAGCAGATCGAAGATAACAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
* * * *
64323813 TTGGTGTCTCTGTGTTGACAGAGAGTAGATCAAAGATAGCAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
* *
64323857 TTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGATAGCAGTT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
* * * **
64323901 TTCGCATCTCTGTATTGACAAAGAGCAGATCGAAGATAATAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
* * *
64323945 TTTGCGTCTCTGTATTGACAGAGAGCATATCAAAGATAGCAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
*
64323989 TTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGATAGCAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
*
64324033 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGTAGAT
1 TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
* * * * *
64324077 TTGGCATCT-TAGTATTGACAAAGAGCAGATTGAAAATAACAGAT
1 TTGGCGTCTCT-GTATTGACAGAGAGCAGATCGAAGATAGCAGAT
* * * * *
64324121 TTTGCTTCTCTATGTTAGA-TGCAGAGCAGATCGAAGATAGCAGAT
1 TTGGCGTCTCTGTATT-GACAG-AGAGCAGATCGAAGATAGCAGAT
64324166 CTAACATTTG
Statistics
Matches: 454, Mismatches: 67, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
43 2 0.00
44 429 0.94
45 23 0.05
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (44 bp):
TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAGAT
Found at i:64326053 original size:20 final size:20
Alignment explanation
Indices: 64325994--64326054 Score: 54
Period size: 20 Copynumber: 3.0 Consensus size: 20
64325984 ATATATGTAA
*
64325994 ATTAT-TATATATTATTATATT
1 ATTATGTATA-ATTAATAT-TT
* *
64326015 ATTTTG-ATTATTAACTATTT
1 ATTATGTATAATTAA-TATTT
64326035 ATTATGTATAATTAATATTT
1 ATTATGTATAATTAATATTT
64326055 TTAAATTATT
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
20 16 0.50
21 16 0.50
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (20 bp):
ATTATGTATAATTAATATTT
Found at i:64349631 original size:42 final size:43
Alignment explanation
Indices: 64349572--64349667 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 43
64349562 TCTGTTTTGT
* *
64349572 GTGTAAGACCATGTCTGGGACA-TCGGCATC-ATATATGATTTC
1 GTGTAAGACCATATCTGGGACAGT-GGCATCGATATATGATTAC
* * *
64349614 GTGTAAGACCTTATCTGGGACAGTGGCATCGATGTTTGATTAC
1 GTGTAAGACCATATCTGGGACAGTGGCATCGATATATGATTAC
*
64349657 ATGTAAGACCA
1 GTGTAAGACCA
64349668 CGTCTGAGAT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 26 0.58
43 19 0.42
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATATCTGGGACAGTGGCATCGATATATGATTAC
Found at i:64350949 original size:20 final size:20
Alignment explanation
Indices: 64350924--64350961 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
64350914 CCTATACATG
*
64350924 GTAAAAATTTTCTAAGTTTT
1 GTAAAAATTTCCTAAGTTTT
64350944 GTAAAAATTTCCTAAGTT
1 GTAAAAATTTCCTAAGTT
64350962 CTTGGTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.08, G:0.11, T:0.45
Consensus pattern (20 bp):
GTAAAAATTTCCTAAGTTTT
Found at i:64353796 original size:22 final size:23
Alignment explanation
Indices: 64353754--64353796 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
64353744 AAAACTACCG
*
64353754 GTAAAAATGCAGACAAGTTGCTA
1 GTAAAAATGCAGACAAATTGCTA
*
64353777 GTAAAAATG-AGATAAATTGC
1 GTAAAAATGCAGACAAATTGC
64353797 CTAATCTCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.47, C:0.09, G:0.21, T:0.23
Consensus pattern (23 bp):
GTAAAAATGCAGACAAATTGCTA
Found at i:64364579 original size:15 final size:15
Alignment explanation
Indices: 64364540--64364598 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
64364530 TAAAGGTAAC
*
64364540 AAGAAACCCGA-ATA
1 AAGAAACCCAAGATA
* *
64364554 AAGAAATCCAAGATT
1 AAGAAACCCAAGATA
* *
64364569 GAGAAACCCAAAATA
1 AAGAAACCCAAGATA
64364584 AAGAAACCCAAGATA
1 AAGAAACCCAAGATA
64364599 CGATACTATG
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
14 9 0.26
15 26 0.74
ACGTcount: A:0.58, C:0.19, G:0.14, T:0.10
Consensus pattern (15 bp):
AAGAAACCCAAGATA
Found at i:64364586 original size:30 final size:29
Alignment explanation
Indices: 64364541--64364597 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
64364531 AAAGGTAACA
* *
64364541 AGAAACCCGAATAAAGAAATCCAAGATTG
1 AGAAACCCAAATAAAGAAACCCAAGATTG
64364570 AGAAACCCAAAATAAAGAAACCCAAGAT
1 AGAAACCC-AAATAAAGAAACCCAAGAT
64364598 ACGATACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 8 0.32
30 17 0.68
ACGTcount: A:0.56, C:0.19, G:0.14, T:0.11
Consensus pattern (29 bp):
AGAAACCCAAATAAAGAAACCCAAGATTG
Found at i:64367084 original size:46 final size:46
Alignment explanation
Indices: 64367017--64367190 Score: 221
Period size: 46 Copynumber: 3.8 Consensus size: 46
64367007 TGTAACCCGC
*
64367017 CCATAAGCAAACTCGGACTCAACTCAACGAGTTCGAACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGAACGTTCGCAT
* * *
64367063 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GA--AC--GTTCGCAT
*
64367113 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGAACGTTCGCAT
*
64367156 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG
64367191 GATGCTCAAA
Statistics
Matches: 109, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 61 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGAACGTTCGCAT
Found at i:64367138 original size:93 final size:93
Alignment explanation
Indices: 64367026--64367195 Score: 331
Period size: 93 Copynumber: 1.8 Consensus size: 93
64367016 CCCATAAGCA
64367026 AACTCGGACTCAACTCAACGAGTTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
64367091 GAGTTCAGATGCCTAGTTACATCTCACG
66 GAGTTCAGATGCCTAGTTACATCTCACG
64367119 AACTCGGACTCAACTCAACGAGTTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
64367184 GAGTTCGGATGC
66 GAGTTCAGATGC
64367196 TCAAATATCC
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCAGATGCCTAGTTACATCTCACG
Found at i:64369935 original size:16 final size:16
Alignment explanation
Indices: 64369909--64369949 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
64369899 TGAATATTTC
64369909 TTCTTTA-TTCTTTAAT
1 TTCTTTATTTC-TTAAT
*
64369925 TTC-TTATTTCTTATT
1 TTCTTTATTTCTTAAT
64369940 TTCTTTATTT
1 TTCTTTATTT
64369950 TCTTGTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (16 bp):
TTCTTTATTTCTTAAT
Found at i:64380851 original size:13 final size:13
Alignment explanation
Indices: 64380835--64380874 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
64380825 GGGGGTAGGA
64380835 TTCTGTATATCTG
1 TTCTGTATATCTG
*
64380848 TTCTGCATATCTG
1 TTCTGTATATCTG
64380861 ATTCTGT-TATCTG
1 -TTCTGTATATCTG
64380874 T
1 T
64380875 ATTTGAAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 1 0.04
13 18 0.75
14 5 0.21
ACGTcount: A:0.15, C:0.17, G:0.15, T:0.53
Consensus pattern (13 bp):
TTCTGTATATCTG
Found at i:64384070 original size:48 final size:47
Alignment explanation
Indices: 64383983--64384079 Score: 131
Period size: 48 Copynumber: 2.0 Consensus size: 47
64383973 TTTATGCTAC
** *
64383983 TTTAAGGACTGCTATTTGGTGTATTAATGCAGCTGAAAAATATGTTGT
1 TTTAAGGACTGCTATTTGGTGTATTAATGCAGCAAAAAAAT-TATTGT
* * *
64384031 TTTAAGGACTGTTGTTTGGTGTATTCATGCAGCAAAAAAATTATTGT
1 TTTAAGGACTGCTATTTGGTGTATTAATGCAGCAAAAAAATTATTGT
64384078 TT
1 TT
64384080 AGGCATCAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
47 7 0.16
48 36 0.84
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (47 bp):
TTTAAGGACTGCTATTTGGTGTATTAATGCAGCAAAAAAATTATTGT
Found at i:64384179 original size:91 final size:91
Alignment explanation
Indices: 64384023--64384394 Score: 591
Period size: 91 Copynumber: 4.1 Consensus size: 91
64384013 AGCTGAAAAA
* * *
64384023 TATGTTGTTTTAAGGACTGTTGTTTGGTGTATTCATGCAGCAAAAAAATTATTGTTTAGGCATCA
1 TATGTTGTTTTAAGGACTGTTGTTTGGTGTATTAATGCAGCAAAAAAATTGTTGTTTAGACATCA
64384088 ATTAATGTTGTCTAAGTGACTGTATT
66 ATTAATGTTGTCTAAGTGACTGTATT
* * *
64384114 TATGTTATTTTAAGGACTGTTGTTTGGTGTATTAATACAGCAAAAAAATTGTTGTTTAGATATCA
1 TATGTTGTTTTAAGGACTGTTGTTTGGTGTATTAATGCAGCAAAAAAATTGTTGTTTAGACATCA
* *
64384179 ATTAATGTTTTCTAAGTGACTGCATT
66 ATTAATGTTGTCTAAGTGACTGTATT
* * * *
64384205 TATGATGTTTTAAGGACTGTTGTTTGATGTATTAATGCAGTAGAAAAATTGTTGTTTAGACATCA
1 TATGTTGTTTTAAGGACTGTTGTTTGGTGTATTAATGCAGCAAAAAAATTGTTGTTTAGACATCA
64384270 ATTAATGTTGTCTAAGTGACTGTATT
66 ATTAATGTTGTCTAAGTGACTGTATT
* * *
64384296 TATGTTGTTCTAAGGACTGTTGTTTGTTGTATTAATGCAGCAGAAAAATTGTTGTTTAGACATCA
1 TATGTTGTTTTAAGGACTGTTGTTTGGTGTATTAATGCAGCAAAAAAATTGTTGTTTAGACATCA
64384361 ATTAATGTTGTCTAAGTGACTGTAAATT
66 ATTAATGTTGTCTAAGTGACTGT--ATT
64384389 TATGTT
1 TATGTT
64384395 AATAATGGTT
Statistics
Matches: 258, Mismatches: 21, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
91 249 0.97
93 9 0.03
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (91 bp):
TATGTTGTTTTAAGGACTGTTGTTTGGTGTATTAATGCAGCAAAAAAATTGTTGTTTAGACATCA
ATTAATGTTGTCTAAGTGACTGTATT
Found at i:64390857 original size:48 final size:48
Alignment explanation
Indices: 64390786--64391123 Score: 604
Period size: 48 Copynumber: 7.0 Consensus size: 48
64390776 CAAGATAAAT
*
64390786 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
*
64390834 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
64390882 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
* *
64390930 ATATGTATATGTTGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
*
64390978 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
*
64391026 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
* *
64391074 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
64391122 AT
1 AT
64391124 GTGTGTATAT
Statistics
Matches: 281, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 281 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
Found at i:64391314 original size:37 final size:37
Alignment explanation
Indices: 64391264--64391366 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
64391254 GGAAATATAT
*
64391264 TCCGGGTAAGACCCGATGACTACGTGTGGAGCTTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
64391301 TCCGGGTAAGACCCGATGACTACATATGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
64391338 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
64391367 GGACTATTCG
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:64402964 original size:45 final size:44
Alignment explanation
Indices: 64402848--64402981 Score: 184
Period size: 43 Copynumber: 3.1 Consensus size: 44
64402838 TATCGAAATG
* *
64402848 TGATATTCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
64402892 TGATA-TCGGGCTTTGAGCTTAGTAGGCTATGATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
64402935 T-ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGT-AAA
1 TGA-TATTCGGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
64402979 TGA
1 TGA
64402982 AATGTTATGT
Statistics
Matches: 78, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
42 1 0.01
43 36 0.46
44 14 0.18
45 27 0.35
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (44 bp):
TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:64403309 original size:38 final size:38
Alignment explanation
Indices: 64403251--64403443 Score: 203
Period size: 38 Copynumber: 5.1 Consensus size: 38
64403241 ATGATATTTG
* ** *
64403251 TATCCGGCTTAAAGACCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGGTTAAATCCCGCAGGCT-TCGTGCTGGAATTA
* *
64403289 TATCAGGGTTAAATCTCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
* * * *
64403327 TATTCGGATTAAATCCTGCAGGCTTCATGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
* *
64403365 TATCCGGGTTAATTCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * *
64403403 TATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
64403441 TAT
1 TAT
64403444 TTGGGCCTTT
Statistics
Matches: 131, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
37 2 0.02
38 127 0.97
39 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
Found at i:64403357 original size:76 final size:75
Alignment explanation
Indices: 64403251--64403443 Score: 235
Period size: 76 Copynumber: 2.5 Consensus size: 75
64403241 ATGATATTTG
* ** *
64403251 TATCCGGCTTAAAGACCGCAGGCTATATGCTGGAATTATATCAGGGTTAAATCTCGCAGGCTTCG
1 TATCCGGATTAAATCCCGCAGGCT-TATGCTGGAATTATATCAGGGTTAAATCCCGCAGGCTTCG
64403316 TGCTGGTAATA
65 TGCTGGTAATA
* * * *
64403327 TATTCGGATTAAATCCTGCAGGCTTCATGCTGGTAA-TATATCCGGGTTAATTCCCGCAGGCTTC
1 TATCCGGATTAAATCCCGCAGGCTT-ATGCTGG-AATTATATCAGGGTTAAATCCCGCAGGCTTC
*
64403391 GTGCTGGTATTA
64 GTGCTGGTAATA
* * *
64403403 TATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTATAT
1 TATCCGGATTAAATCCCGCAGGCTTA-TGCTGGAATTATAT
64403444 TTGGGCCTTT
Statistics
Matches: 99, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
75 3 0.03
76 94 0.95
77 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (75 bp):
TATCCGGATTAAATCCCGCAGGCTTATGCTGGAATTATATCAGGGTTAAATCCCGCAGGCTTCGT
GCTGGTAATA
Found at i:64403524 original size:45 final size:45
Alignment explanation
Indices: 64403441--64403563 Score: 174
Period size: 45 Copynumber: 2.7 Consensus size: 45
64403431 GCTGGTATTA
* * *
64403441 TATTTGGGCCTTTGAGCCTAGCAAGTTATTATGACGGTGAGACAC
1 TATTTGGGCCTTTGAGCCTAGCAGGCTATAATGACGGTGAGACAC
* * * *
64403486 TATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTTGGGCCTTTGAGCCTAGCAGGCTATAATGACGGTGAGACAC
*
64403531 TATTTGGGCTTTTGAGCCTAGCAGGCTATAATG
1 TATTTGGGCCTTTGAGCCTAGCAGGCTATAATG
64403564 TCGATGAAAT
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 68 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (45 bp):
TATTTGGGCCTTTGAGCCTAGCAGGCTATAATGACGGTGAGACAC
Found at i:64405286 original size:25 final size:25
Alignment explanation
Indices: 64405258--64405322 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
64405248 CATATAGCAA
*
64405258 GAAGCTCATGT-GAGCTAAGTAACGG
1 GAAGCTCAT-TCGAGCTAAGTAACAG
* *
64405283 GAAGCTCATTCGAGCTGAGTATCAG
1 GAAGCTCATTCGAGCTAAGTAACAG
64405308 GAAGCTC-TTGCGAGC
1 GAAGCTCATT-CGAGC
64405323 AAAATATCGA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.09
25 32 0.91
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.22
Consensus pattern (25 bp):
GAAGCTCATTCGAGCTAAGTAACAG
Found at i:64407918 original size:13 final size:13
Alignment explanation
Indices: 64407900--64407950 Score: 50
Period size: 13 Copynumber: 4.0 Consensus size: 13
64407890 AAAAATATTT
64407900 TTTAATCAATTAA
1 TTTAATCAATTAA
*
64407913 TTTAATAAATTAA
1 TTTAATCAATTAA
* * *
64407926 ATTAATTAATTAC
1 TTTAATCAATTAA
*
64407939 TTT-CTCAATTAA
1 TTTAATCAATTAA
64407951 ATTATTTTCT
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
12 6 0.20
13 24 0.80
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (13 bp):
TTTAATCAATTAA
Found at i:64414685 original size:27 final size:27
Alignment explanation
Indices: 64414655--64414797 Score: 173
Period size: 27 Copynumber: 5.3 Consensus size: 27
64414645 TACTGAAATG
* **
64414655 CCCTCGATTTGTAGAATTATTGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
64414682 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
64414709 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * *
64414736 CCCTCAATTTA-AAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
64414762 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTATAGAATTACCGTTTTA
*
64414789 CCATCGATT
1 CCCTCGATT
64414798 GTGAAATTAC
Statistics
Matches: 103, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
25 1 0.01
26 22 0.21
27 79 0.77
28 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:64414713 original size:54 final size:53
Alignment explanation
Indices: 64414655--64414790 Score: 184
Period size: 53 Copynumber: 2.5 Consensus size: 53
64414645 TACTGAAATG
* ** * *
64414655 CCCTCGATTTGTAGAATTATTGTTTTACCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTA-AAAATTACCATTTTA
64414709 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTAAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTAAAAATTACCATTTTA
* *
64414762 CCCTC-AGTTTACAAAATTACCGTTTTACC
1 CCCTCGA-TTTATAGAATTACCGTTTTACC
64414791 ATCGATTGTG
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
52 1 0.01
53 39 0.53
54 34 0.46
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (53 bp):
CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTAAAAATTACCATTTTA
Found at i:64414833 original size:27 final size:27
Alignment explanation
Indices: 64414801--64414897 Score: 124
Period size: 27 Copynumber: 3.6 Consensus size: 27
64414791 ATCGATTGTG
**
64414801 AAATTACTGAAATACCCCT-GTAGGATA
1 AAATTACCAAAATACCCCTAGTAGG-TA
**
64414828 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTAGGTA
**
64414855 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTAGGTA
64414882 AAATTACCAAAATACC
1 AAATTACCAAAATACC
64414898 ACTGGTTTGT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
27 62 0.95
28 3 0.05
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTAGGTA
Found at i:64414905 original size:27 final size:27
Alignment explanation
Indices: 64414826--64415045 Score: 165
Period size: 27 Copynumber: 8.1 Consensus size: 27
64414816 CCCTGTAGGA
* *
64414826 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCACTGGTTTG
* *
64414853 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCACTGGTTTG
64414880 TAAAATTACCAAAATACCACTGGTTTG
1 TAAAATTACCAAAATACCACTGGTTTG
* **
64414907 TGAAATTACTGAAATACCACTGGTTTG
1 TAAAATTACCAAAATACCACTGGTTTG
* ** * * * *
64414934 TGAAATTTTCGAAATACCCCTGATTTA
1 TAAAATTACCAAAATACCACTGGTTTG
* * * *
64414961 CAAAATTACAAAAATACC-CTTGACTTTC
1 TAAAATTACCAAAATACCAC-TG-GTTTG
** * *
64414989 TAAAAATTATAAAAATACCATTGGTTTA
1 T-AAAATTACCAAAATACCACTGGTTTG
* * *
64415017 CAAAATTACTAAAATAACC-TTGGTTTG
1 TAAAATTACCAAAAT-ACCACTGGTTTG
64415044 TA
1 TA
64415046 GGTTTACCAA
Statistics
Matches: 159, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 131 0.82
28 9 0.06
29 18 0.11
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACCAAAATACCACTGGTTTG
Found at i:64414922 original size:81 final size:81
Alignment explanation
Indices: 64414828--64414978 Score: 187
Period size: 81 Copynumber: 1.9 Consensus size: 81
64414818 CTGTAGGATA
* ** *
64414828 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAA
1 AAATTACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCCTGA-TTTACAAAATTACAAA
64414892 AATACCACTGGTTTGTG
65 AATACCACTGGTTTGTG
** * * ** *
64414909 AAATTACTGAAATACCACTGGTTTGTGAAATTTTCGAAATACCCCTGATTTACAAAATTACAAAA
1 AAATTACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAAAA
64414974 ATACC
66 ATACC
64414979 CTTGACTTTC
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
81 57 0.98
82 1 0.02
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAAAA
ATACCACTGGTTTGTG
Found at i:64414951 original size:54 final size:53
Alignment explanation
Indices: 64414796--64414940 Score: 182
Period size: 54 Copynumber: 2.7 Consensus size: 53
64414786 TTACCATCGA
** *
64414796 TTGTGAAATTACTGAAATACCCCTGTAGGATAAAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACTGAAATACCCCTGTTTG-TAAAATTACCAAAATACCACTAGT
* ** *
64414850 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGT
1 TTGTGAAATTACTGAAATACCCCT-GTTTGTAAAATTACCAAAATACCACTAGT
* *
64414904 TTGTGAAATTACTGAAATACCACTGGTTTGTGAAATT
1 TTGTGAAATTACTGAAATACCCCT-GTTTGTAAAATT
64414941 TTCGAAATAC
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
54 74 0.96
55 3 0.04
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (53 bp):
TTGTGAAATTACTGAAATACCCCTGTTTGTAAAATTACCAAAATACCACTAGT
Found at i:64416007 original size:25 final size:24
Alignment explanation
Indices: 64415969--64416038 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
64415959 AGGAAGTGCT
*
64415969 AAAAGGGCTCTGCCCTAGTTTACC
1 AAAAGGGCTTTGCCCTAGTTTACC
* *
64415993 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCTAGTTTACC
64416018 AGAAAGGGCTTTGCCCTAGTT
1 A-AAAGGGCTTTGCCCTAGTT
64416039 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 1 0.03
25 39 0.98
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCTAGTTTACC
Found at i:64416051 original size:24 final size:24
Alignment explanation
Indices: 64415968--64416051 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
64415958 GAGGAAGTGC
* *
64415968 TAAAAGGGCTCTGCCCTAGTTTACC
1 TAAAAGGGCTTTGCCCTAGTTTA-T
* *
64415993 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCTAGTTTAT
*
64416017 CAGAAAGGGCTTTGCCCTAG-TTAT
1 TA-AAAGGGCTTTGCCCTAGTTTAT
64416041 TAAAAGAGGCT
1 TAAAAG-GGCT
64416052 AGGCCTCTAG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.20
25 36 0.72
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCTAGTTTAT
Found at i:64416245 original size:42 final size:42
Alignment explanation
Indices: 64416186--64416273 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
64416176 TAGTCTCCCC
*
64416186 AAATGAGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGAGCTTGCATACATCCATTGACATTACATGTGATATTG
*
64416228 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGAGCTTGCATACATCCATTGACATTACATGTGATATTG
64416270 AAAT
1 AAAT
64416274 CAGCCTAGGG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (42 bp):
AAATGAGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:64416360 original size:30 final size:30
Alignment explanation
Indices: 64416301--64416382 Score: 121
Period size: 30 Copynumber: 2.7 Consensus size: 30
64416291 CGTTTACAGT
*
64416301 AAAGGCTTCGGCCCAGTGATACGATTTATGA
1 AAAGGCTTCGGCCCAGTGATA-TATTTATGA
*
64416332 AAAGGCTTCGGCCCAGTGATATATTTATGC
1 AAAGGCTTCGGCCCAGTGATATATTTATGA
*
64416362 AAAGGCTTCGGGCCAGT-ATAT
1 AAAGGCTTCGGCCCAGTGATAT
64416383 GTCAAGACTA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
29 4 0.08
30 23 0.48
31 21 0.44
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGATATATTTATGA
Found at i:64418642 original size:27 final size:27
Alignment explanation
Indices: 64418612--64418777 Score: 217
Period size: 27 Copynumber: 6.2 Consensus size: 27
64418602 TACTGAAATG
**
64418612 CCCTCAATTTGTAGAATTACCATTTTA
1 CCCTCAATTTACAGAATTACCATTTTA
* *
64418639 CCCTCGATTTATAGAA-TACCATTTTA
1 CCCTCAATTTACAGAATTACCATTTTA
* *
64418665 CCCTTAATTTACAGAATTACCGTTTTA
1 CCCTCAATTTACAGAATTACCATTTTA
64418692 CCCTCAATTTACAGAATTACCATTTTA
1 CCCTCAATTTACAGAATTACCATTTTA
* ** *
64418719 CCATTGATTTACAAAATTACCATTTTA
1 CCCTCAATTTACAGAATTACCATTTTA
* *
64418746 CCCTCAATTTACAAAATTACCGTTTTA
1 CCCTCAATTTACAGAATTACCATTTTA
64418773 CCCTC
1 CCCTC
64418778 GATTGTGAAA
Statistics
Matches: 122, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
26 23 0.19
27 99 0.81
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.39
Consensus pattern (27 bp):
CCCTCAATTTACAGAATTACCATTTTA
Found at i:64418770 original size:81 final size:80
Alignment explanation
Indices: 64418612--64418777 Score: 251
Period size: 81 Copynumber: 2.1 Consensus size: 80
64418602 TACTGAAATG
** * * * *
64418612 CCCTCAATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATACCATTTTACCCTTAATTTAC
1 CCCTCAATTTACAGAATTACCATTTTACCATCGATTTACAAAATACCATTTTACCCTCAATTTAC
*
64418677 AGAATTACCGTTTTA
66 AAAATTACCGTTTTA
*
64418692 CCCTCAATTTACAGAATTACCATTTTACCATTGATTTACAAAATTACCATTTTACCCTCAATTTA
1 CCCTCAATTTACAGAATTACCATTTTACCATCGATTTACAAAA-TACCATTTTACCCTCAATTTA
64418757 CAAAATTACCGTTTTA
65 CAAAATTACCGTTTTA
64418773 CCCTC
1 CCCTC
64418778 GATTGTGAAA
Statistics
Matches: 77, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
80 37 0.48
81 40 0.52
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.39
Consensus pattern (80 bp):
CCCTCAATTTACAGAATTACCATTTTACCATCGATTTACAAAATACCATTTTACCCTCAATTTAC
AAAATTACCGTTTTA
Found at i:64418843 original size:27 final size:27
Alignment explanation
Indices: 64418813--64418936 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
64418803 TGTAGGATAG
64418813 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
64418840 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * * *
64418867 AATTACCGAAATACCACTGGTTTTTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
64418894 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
64418921 AATTACCAAAATACCC
1 AATTACCAAAATACCC
64418937 GATTTACAAA
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
26 3 0.04
27 79 0.94
28 2 0.02
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:64418854 original size:54 final size:54
Alignment explanation
Indices: 64418780--64418935 Score: 163
Period size: 54 Copynumber: 2.9 Consensus size: 54
64418770 TTACCCTCGA
* * *
64418780 TTGTGAAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGG-TAAAATTACCAAAATACCACTAGT
* * ** * *
64418834 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCACTGGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
* * **
64418888 TTTTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACC
1 TTGTGAAATTACCGAAATACCCCT-AGTAGGTAAAATTACCAAAATACC
64418936 CGATTTACAA
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
53 4 0.05
54 79 0.92
55 3 0.03
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (54 bp):
TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
Found at i:64418978 original size:81 final size:81
Alignment explanation
Indices: 64418813--64418989 Score: 191
Period size: 81 Copynumber: 2.2 Consensus size: 81
64418803 TGTAGGATAG
* * * ** *
64418813 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAA
1 AATTACCGAAATACCCCTAATTTGTAAAATTACCAAAATACCCCGAGTTTACAAAATTACAGAAA
* **
64418878 TACCACTGGTTTTTGA
66 TACCACTGCTTTTAAA
64418894 AATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATA-CCCGA-TTTACAAAATTACAGAA
1 AATTACCGAAATACCCCT-AATTTGTAAAATTACCAAAATACCCCGAGTTTACAAAATTACAGAA
64418956 ATACC-CTTGACTTTCTAAA
65 ATACCAC-TG-CTTT-TAAA
**
64418975 AATTATAGAAATACC
1 AATTACCGAAATACC
64418990 ATTGGTTTAC
Statistics
Matches: 80, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
78 1 0.01
79 21 0.26
80 11 0.14
81 46 0.57
82 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
AATTACCGAAATACCCCTAATTTGTAAAATTACCAAAATACCCCGAGTTTACAAAATTACAGAAA
TACCACTGCTTTTAAA
Found at i:64419012 original size:27 final size:27
Alignment explanation
Indices: 64418838--64419024 Score: 96
Period size: 27 Copynumber: 6.9 Consensus size: 27
64418828 CCTAGTTTGT
** * * **
64418838 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACTGAAATACCCTTGGTTTAC
* **
64418865 AAAATTACCGAAATACCAC-TGGTTTTT
1 AAAATTACTGAAATACC-CTTGGTTTAC
* * *** **
64418892 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACTGAAATACCCTTGGTTTAC
** *
64418919 AAAATTACCAAAATACCC--GATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* *
64418944 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACTGAAATACCCTTG-GTTTAC
*
64418971 TAAAAATTA-TAGAAATACCATTGGTTTAC
1 --AAAATTACT-GAAATACCCTTGGTTTAC
64419000 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
64419025 GTAGATTTAC
Statistics
Matches: 130, Mismatches: 20, Indels: 20
0.76 0.12 0.12
Matches are distributed among these distances:
25 20 0.15
26 1 0.01
27 82 0.63
28 8 0.06
29 19 0.15
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:64419026 original size:108 final size:106
Alignment explanation
Indices: 64418785--64419044 Score: 254
Period size: 108 Copynumber: 2.4 Consensus size: 106
64418775 CTCGATTGTG
* ** * **
64418785 AAATTACTGAAATACCCCTGTAGGATAGAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACTGAAATACCCTTGTTTG-TAGAATTACCAAAATA-CCCGAGTTTACAAAATTACCAAA
* * * ***
64418850 ATACCCCTAGTTTGTAAAATTACCGAAATACCACTGGTTTTTG
64 ATACCCCTACTTTCTAAAATTACAGAAATACCACTGGTTTACA
* ** *
64418893 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCGA-TTTACAAAATTA-CAGAA
1 AAATTACTGAAATACCCT-TGTTTGTAGAATTACCAAAATACCCGAGTTTACAAAATTACCA-AA
* * *
64418956 ATACCCTTGACTTTCTAAAAATTATAGAAATACCATTGGTTTACA
64 ATACCCCT-ACTTTCT-AAAATTACAGAAATACCACTGGTTTACA
* *
64419001 AAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAACACCC
1 AAATTACTGAAATACCCTT-GTTTGTAGAATTACCAAAATACCC
64419045 TTGTAGGATG
Statistics
Matches: 122, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
105 2 0.02
106 19 0.16
107 9 0.07
108 90 0.74
109 2 0.02
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (106 bp):
AAATTACTGAAATACCCTTGTTTGTAGAATTACCAAAATACCCGAGTTTACAAAATTACCAAAAT
ACCCCTACTTTCTAAAATTACAGAAATACCACTGGTTTACA
Found at i:64419986 original size:25 final size:24
Alignment explanation
Indices: 64419952--64420021 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 24
64419942 AGGAAGTGCT
64419952 AAAAGGGCTTTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
64419976 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
64420001 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
64420022 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
24 1 0.02
25 42 0.98
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:64420216 original size:42 final size:42
Alignment explanation
Indices: 64420169--64420302 Score: 243
Period size: 42 Copynumber: 3.2 Consensus size: 42
64420159 TAGTCTCCCC
*
64420169 AAATGGGCTTGCATACATTCATTGACATTAAATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
64420211 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
64420253 AAATGGGCTTGCATACA-TCTATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTC-ATTGACATTACATGTGATATTG
64420295 AAATGGGC
1 AAATGGGC
64420303 CTAAGGGCCA
Statistics
Matches: 90, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
41 2 0.02
42 88 0.98
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:64420364 original size:31 final size:31
Alignment explanation
Indices: 64420326--64420470 Score: 240
Period size: 31 Copynumber: 4.7 Consensus size: 31
64420316 CGTTTACAGT
*
64420326 AAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
64420357 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
64420388 AAAGGCTTCAGCCCAGTGATATGATTTATG-
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
64420418 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
64420449 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
64420471 TCAAGACTAA
Statistics
Matches: 108, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
30 34 0.31
31 74 0.69
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:64420453 original size:61 final size:61
Alignment explanation
Indices: 64420326--64420470 Score: 231
Period size: 61 Copynumber: 2.4 Consensus size: 61
64420316 CGTTTACAGT
*
64420326 AAAGGCTTCGACCCAGTGATATGATTTATGAAAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCG-CCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGA
*
64420388 AAAGGCTTCAGCCCAGTGATATGATTTATG-AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTC-GCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGA
64420449 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTC-GCCCAGTGATATG
64420471 TCAAGACTAA
Statistics
Matches: 79, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
60 5 0.06
61 45 0.57
62 28 0.35
63 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (61 bp):
AAAGGCTTCGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:64423054 original size:12 final size:12
Alignment explanation
Indices: 64423037--64423067 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
64423027 AGCACATGGT
*
64423037 CGTGTCCTAGCC
1 CGTGTCCTACCC
64423049 CGTGTCCTACCC
1 CGTGTCCTACCC
64423061 CGTGTCC
1 CGTGTCC
64423068 AAACAAGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.45, G:0.23, T:0.26
Consensus pattern (12 bp):
CGTGTCCTACCC
Found at i:64424334 original size:28 final size:29
Alignment explanation
Indices: 64424301--64424355 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
64424291 CCTCGAAATA
*
64424301 CTGATA-TCATGGCCTGAAGCCAAATCAG
1 CTGATATTCATGGCCCGAAGCCAAATCAG
64424329 CTGATATTCATGGCCCGAAGCCAAATC
1 CTGATATTCATGGCCCGAAGCCAAATC
64424356 GGTATATCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 6 0.24
29 19 0.76
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (29 bp):
CTGATATTCATGGCCCGAAGCCAAATCAG
Found at i:64429349 original size:11 final size:11
Alignment explanation
Indices: 64429335--64429371 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
64429325 AAATACAAAG
64429335 AAAAGAAAGGA
1 AAAAGAAAGGA
*
64429346 AAAATAAA-G-
1 AAAAGAAAGGA
64429355 AAAAGAAAGGA
1 AAAAGAAAGGA
64429366 AAAAGA
1 AAAAGA
64429372 TTCATCTAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 7 0.32
10 2 0.09
11 13 0.59
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.03
Consensus pattern (11 bp):
AAAAGAAAGGA
Found at i:64429356 original size:20 final size:20
Alignment explanation
Indices: 64429331--64429369 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
64429321 CCAAAAATAC
64429331 AAAGAAAAGAAAGGAAAAAT
1 AAAGAAAAGAAAGGAAAAAT
64429351 AAAGAAAAGAAAGGAAAAA
1 AAAGAAAAGAAAGGAAAAA
64429370 GATTCATCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.03
Consensus pattern (20 bp):
AAAGAAAAGAAAGGAAAAAT
Found at i:64429454 original size:35 final size:35
Alignment explanation
Indices: 64429408--64429476 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
64429398 CTTTGATTAA
** *
64429408 GGTATGTGTTTTGTTCTGTTTTTTATAATTTCTAG
1 GGTATGTGTTTTGTTCCATTTTTGATAATTTCTAG
64429443 GGTATGTGTTTTGTTCCATTTTTGATAATTTCTA
1 GGTATGTGTTTTGTTCCATTTTTGATAATTTCTA
64429477 TGTTTTTGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.16, C:0.07, G:0.19, T:0.58
Consensus pattern (35 bp):
GGTATGTGTTTTGTTCCATTTTTGATAATTTCTAG
Found at i:64430256 original size:44 final size:42
Alignment explanation
Indices: 64430192--64430326 Score: 139
Period size: 44 Copynumber: 3.1 Consensus size: 42
64430182 ACTTAGGATC
* * *
64430192 TGATATGTGTTTTGGTGTAAGACCATGTCTGGGACGTTGGCA
1 TGATATATGATTTCGTGTAAGACCATGTCTGGGACGTTGGCA
* *
64430234 TCGACT-TATGATTTATGTGTAAGACCATGTCTGGGACATTGGCA
1 T-GA-TATATGATTT-CGTGTAAGACCATGTCTGGGACGTTGGCA
* * *
64430278 TTATATTTGATTTCGTGTAAGACCCTGTCTGGGACAG-TGGCA
1 TGATATATGATTTCGTGTAAGACCATGTCTGGGAC-GTTGGCA
64430320 TTGATAT
1 -TGATAT
64430327 TCGACTACAT
Statistics
Matches: 77, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
42 27 0.35
43 21 0.27
44 29 0.38
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.36
Consensus pattern (42 bp):
TGATATATGATTTCGTGTAAGACCATGTCTGGGACGTTGGCA
Found at i:64430309 original size:42 final size:43
Alignment explanation
Indices: 64430206--64430327 Score: 149
Period size: 42 Copynumber: 2.8 Consensus size: 43
64430196 ATGTGTTTTG
* * * *
64430206 GTGTAAGACCATGTCTGGGACGTTGGCATCGACT-TATGATTTAT
1 GTGTAAGACCATGTCTGGGACATTGGCAT-TA-TATTTGATTTAC
64430250 GTGTAAGACCATGTCTGGGACATTGGCATTATATTTGATTT-C
1 GTGTAAGACCATGTCTGGGACATTGGCATTATATTTGATTTAC
* *
64430292 GTGTAAGACCCTGTCTGGGACAGTGGCATTGATATT
1 GTGTAAGACCATGTCTGGGACATTGGCATT-ATATT
64430328 CGACTACATA
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
42 29 0.41
43 13 0.19
44 28 0.40
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATTATATTTGATTTAC
Found at i:64433056 original size:79 final size:80
Alignment explanation
Indices: 64432950--64433121 Score: 276
Period size: 79 Copynumber: 2.2 Consensus size: 80
64432940 AGACTAAGAT
*
64432950 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
64433015 -ATTCCGGGCTAAG-C
66 TA-ACCGGGCTAAGTC
* *
64433029 CCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
64433094 TAACCGGGCTATGTC
66 TAACCGGGCTAAGTC
64433109 CCGAAGGCATTTG
1 CCGAAGGCATTTG
64433122 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
79 71 0.83
80 15 0.17
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
TAACCGGGCTAAGTC
Found at i:64433128 original size:40 final size:40
Alignment explanation
Indices: 64432897--64433121 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
64432887 TTGAATGATG
* * * *
64432897 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
64432937 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
64432977 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64433017 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64433056 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64433097 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64433122 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 36 0.23
40 113 0.71
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64441307 original size:30 final size:30
Alignment explanation
Indices: 64441273--64441333 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
64441263 AAAATACAAG
*
64441273 AAAATCTCGCCCAACCATCCAATCACACTA
1 AAAATCTCACCCAACCATCCAATCACACTA
64441303 AAAATCTCACCCAACCATCCAATCACACTA
1 AAAATCTCACCCAACCATCCAATCACACTA
64441333 A
1 A
64441334 CTCTGTCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.39, G:0.02, T:0.16
Consensus pattern (30 bp):
AAAATCTCACCCAACCATCCAATCACACTA
Found at i:64443101 original size:46 final size:46
Alignment explanation
Indices: 64443049--64443168 Score: 240
Period size: 46 Copynumber: 2.6 Consensus size: 46
64443039 TGTAACCCGC
64443049 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
64443095 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
64443141 CCATAAGTGAACTCGGACTCAACTCAAC
1 CCATAAGTGAACTCGGACTCAACTCAAC
64443169 GAGTTCAGAA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
Found at i:64448915 original size:21 final size:21
Alignment explanation
Indices: 64448891--64448932 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
64448881 TCATCAGATC
64448891 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGCATCGGGGG
** *
64448912 TACAGGTTGAGGTATCGGGGG
1 TACACCTTGAGGCATCGGGGG
64448933 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.19, C:0.17, G:0.43, T:0.21
Consensus pattern (21 bp):
TACACCTTGAGGCATCGGGGG
Found at i:64454851 original size:80 final size:80
Alignment explanation
Indices: 64454718--64454878 Score: 322
Period size: 80 Copynumber: 2.0 Consensus size: 80
64454708 TCACACCAAA
64454718 TATGTGTTGCGCGGATGGAAACATCATTAATGAATTTTTGCCCTCTGTCAGACCTATGTCACAAC
1 TATGTGTTGCGCGGATGGAAACATCATTAATGAATTTTTGCCCTCTGTCAGACCTATGTCACAAC
64454783 ACAGGCTTAAACGTG
66 ACAGGCTTAAACGTG
64454798 TATGTGTTGCGCGGATGGAAACATCATTAATGAATTTTTGCCCTCTGTCAGACCTATGTCACAAC
1 TATGTGTTGCGCGGATGGAAACATCATTAATGAATTTTTGCCCTCTGTCAGACCTATGTCACAAC
64454863 ACAGGCTTAAACGTG
66 ACAGGCTTAAACGTG
64454878 T
1 T
64454879 CGCGACACAC
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 81 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (80 bp):
TATGTGTTGCGCGGATGGAAACATCATTAATGAATTTTTGCCCTCTGTCAGACCTATGTCACAAC
ACAGGCTTAAACGTG
Found at i:64470895 original size:100 final size:101
Alignment explanation
Indices: 64470708--64470915 Score: 251
Period size: 100 Copynumber: 2.1 Consensus size: 101
64470698 CTAAATGACC
* * * * * **
64470708 TTGTATATTCGGCCACATAGGTATGTACATATGTGATGTTATTTTGGATCTTGAATATTCGGTCA
1 TTGTATATTCGACCACATAAGTAAGTACACATGTGATGTTAATTTGGATCTTGAATATTCGACCA
** *
64470773 TGAAGGTATGCACAAATGTGATATTATATTTGA-AT
66 TGAAGGTAAACACAAATATGATATTATATTTGATAT
* *
64470808 TTGTATATTCGACCATATAAGTAAGTACACATGTGATGTTAAATTT-GATCTTGCATATTCGACC
1 TTGTATATTCGACCACATAAGTAAGTACACATGTGATGTT-AATTTGGATCTTGAATATTCGACC
*
64470872 AT-ATAGGTAAACACATATATGATATTATATTTGATAT
65 ATGA-AGGTAAACACAAATATGATATTATATTTGATAT
64470909 TGTGTAT
1 T-TGTAT
64470916 TTGGCCAAAT
Statistics
Matches: 91, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
99 1 0.01
100 78 0.86
101 7 0.08
102 5 0.05
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.40
Consensus pattern (101 bp):
TTGTATATTCGACCACATAAGTAAGTACACATGTGATGTTAATTTGGATCTTGAATATTCGACCA
TGAAGGTAAACACAAATATGATATTATATTTGATAT
Found at i:64470906 original size:50 final size:50
Alignment explanation
Indices: 64470707--64470916 Score: 192
Period size: 50 Copynumber: 4.2 Consensus size: 50
64470697 GCTAAATGAC
* * * * *
64470707 CTTGTATATTCGGCCACATAGGTATGTACATATGTGATGTTAT-TTTGGAT
1 CTTGTATATTCGACCATATAGGTAAGCACATATGTGATATTATATTT-GAT
* ** * *
64470757 CTTGAATATTCGGTCATGA-AGGTATGCACAAATGTGATATTATATTTGAAT
1 CTTGTATATTCGACCAT-ATAGGTAAGCACATATGTGATATTATATTTG-AT
* * * * *
64470808 -TTGTATATTCGACCATATAAGTAAGTACACATGTGATGTTAAATTTGAT
1 CTTGTATATTCGACCATATAGGTAAGCACATATGTGATATTATATTTGAT
* * *
64470857 CTTGCATATTCGACCATATAGGTAAACACATATATGATATTATATTTGAT
1 CTTGTATATTCGACCATATAGGTAAGCACATATGTGATATTATATTTGAT
* *
64470907 ATTGTGTATT
1 CTTGTATATT
64470917 TGGCCAAATG
Statistics
Matches: 129, Mismatches: 26, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
49 3 0.02
50 120 0.93
51 6 0.05
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (50 bp):
CTTGTATATTCGACCATATAGGTAAGCACATATGTGATATTATATTTGAT
Found at i:64479102 original size:27 final size:28
Alignment explanation
Indices: 64479072--64479144 Score: 105
Period size: 27 Copynumber: 2.7 Consensus size: 28
64479062 CCGATTAATA
*
64479072 AAATTATCGAAATACCCCT-AACTTGTG
1 AAATTACCGAAATACCCCTCAACTTGTG
* *
64479099 AAATTACCGAAATA-CCCTCGATTTGTG
1 AAATTACCGAAATACCCCTCAACTTGTG
64479126 AAATTACCGAAATACCCCT
1 AAATTACCGAAATACCCCT
64479145 GTAGGGTAGG
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
26 4 0.10
27 33 0.80
28 4 0.10
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (28 bp):
AAATTACCGAAATACCCCTCAACTTGTG
Found at i:64479158 original size:27 final size:27
Alignment explanation
Indices: 64479128--64479341 Score: 286
Period size: 27 Copynumber: 7.9 Consensus size: 27
64479118 GATTTGTGAA
64479128 ATTACCGAAATACCCCTGTAGGGTAGG
1 ATTACCGAAATACCCCTGTAGGGTAGG
* *
64479155 ATTACTGAAATACCCCTGTAGGGTAAG
1 ATTACCGAAATACCCCTGTAGGGTAGG
* * *
64479182 ATTACCGAAATACCTCTGTAAGGTACG
1 ATTACCGAAATACCCCTGTAGGGTAGG
* *
64479209 ATTATCGAAATACCCCTAT-GTGGTAGG
1 ATTACCGAAATACCCCTGTAG-GGTAGG
64479236 ATTACCGAAATACCCCTGTAGGGTAGG
1 ATTACCGAAATACCCCTGTAGGGTAGG
*
64479263 ATTATCGAAATACCCCTGTAGGGTAGG
1 ATTACCGAAATACCCCTGTAGGGTAGG
* * *
64479290 ATTACCAAAATACCACTGTAGGGCAGG
1 ATTACCGAAATACCCCTGTAGGGTAGG
* * *
64479317 ATTACCAAAATACCCTTCTAGGGTA
1 ATTACCGAAATACCCCTGTAGGGTA
64479342 AAATGATCGT
Statistics
Matches: 163, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
27 162 0.99
28 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (27 bp):
ATTACCGAAATACCCCTGTAGGGTAGG
Found at i:64479159 original size:54 final size:52
Alignment explanation
Indices: 64479101--64479331 Score: 207
Period size: 54 Copynumber: 4.3 Consensus size: 52
64479091 AACTTGTGAA
64479101 ATTACCGAAATACCCTCGATTT-GTGAAATTACCGAAATACCCCTGTAGGGTAGG
1 ATTACCGAAATACCC-C-ATTTGGT-AAATTACCGAAATACCCCTGTAGGGTAGG
* * * * *
64479155 ATTACTGAAATACCCC-TGTAGGGTAAGATTACCGAAATACCTCTGTAAGGTACG
1 ATTACCGAAATACCCCAT-T-TGGTAA-ATTACCGAAATACCCCTGTAGGGTAGG
* * *
64479209 ATTATCGAAATACCCCTATGTGGTAGGATTACCGAAATACCCCTGTAGGGTAGG
1 ATTACCGAAATACCCC-ATTTGGTA-AATTACCGAAATACCCCTGTAGGGTAGG
* * * * * *
64479263 ATTATCGAAATACCCC-TGTAGGGTAGGATTACCAAAATACCACTGTAGGGCAGG
1 ATTACCGAAATACCCCAT-T-TGGTA-AATTACCGAAATACCCCTGTAGGGTAGG
*
64479317 ATTACCAAAATACCC
1 ATTACCGAAATACCC
64479332 TTCTAGGGTA
Statistics
Matches: 148, Mismatches: 20, Indels: 18
0.80 0.11 0.10
Matches are distributed among these distances:
51 1 0.01
52 2 0.01
53 3 0.02
54 141 0.95
56 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.25
Consensus pattern (52 bp):
ATTACCGAAATACCCCATTTGGTAAATTACCGAAATACCCCTGTAGGGTAGG
Found at i:64479359 original size:27 final size:27
Alignment explanation
Indices: 64479329--64479395 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 27
64479319 TACCAAAATA
*
64479329 CCCTTCTAGGGTAAAATGATCGTTTTG
1 CCCTTATAGGGTAAAATGATCGTTTTG
* * *
64479356 CCC-TAAAGAGTAAAATGATTGTTTTG
1 CCCTTATAGGGTAAAATGATCGTTTTG
*
64479382 CCCTTGT-GGGTAAA
1 CCCTTATAGGGTAAA
64479396 TGACTGACTT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
26 28 0.88
27 4 0.12
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.34
Consensus pattern (27 bp):
CCCTTATAGGGTAAAATGATCGTTTTG
Found at i:64479395 original size:26 final size:26
Alignment explanation
Indices: 64479336--64479385 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
64479326 ATACCCTTCT
64479336 AGGGTAAAATGATCGTTTTGCCCTAA
1 AGGGTAAAATGATCGTTTTGCCCTAA
* *
64479362 AGAGTAAAATGATTGTTTTGCCCT
1 AGGGTAAAATGATCGTTTTGCCCT
64479386 TGTGGGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (26 bp):
AGGGTAAAATGATCGTTTTGCCCTAA
Found at i:64481653 original size:31 final size:31
Alignment explanation
Indices: 64481618--64481681 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
64481608 ATGACCTAAT
*
64481618 AAATGAATGTTTTTAAACTAACTCAAAGTAC
1 AAATGAATGTTTTTAAACAAACTCAAAGTAC
64481649 AAATGAATGTTTTTAAACAAACTCAAAGTAC
1 AAATGAATGTTTTTAAACAAACTCAAAGTAC
64481680 AA
1 AA
64481682 CTATGGTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.30
Consensus pattern (31 bp):
AAATGAATGTTTTTAAACAAACTCAAAGTAC
Found at i:64482893 original size:46 final size:46
Alignment explanation
Indices: 64482818--64483274 Score: 630
Period size: 46 Copynumber: 10.0 Consensus size: 46
64482808 TTATCTTCGA
* * * * * *
64482818 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* * *** *
64482864 CAGGTTGCCATGGTATCTTCCAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* ** ** ***
64482910 TACATTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
** * *
64482955 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
64483001 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
64483047 CCTGTTGCCATGGTATCTTTCAACCATGTTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
64483093 CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
64483139 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
64483185 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
64483231 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
64483275 TTCAAAAAGC
Statistics
Matches: 374, Mismatches: 35, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
45 43 0.11
46 331 0.89
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:64486878 original size:14 final size:14
Alignment explanation
Indices: 64486859--64486889 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
64486849 CAAATAAAAG
64486859 ACTTAAAAAATTTC
1 ACTTAAAAAATTTC
64486873 ACTTAAAAAATTTC
1 ACTTAAAAAATTTC
64486887 ACT
1 ACT
64486890 CTAATGAGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.35
Consensus pattern (14 bp):
ACTTAAAAAATTTC
Found at i:64487197 original size:25 final size:25
Alignment explanation
Indices: 64487169--64487219 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
64487159 ATGAGTATGT
*
64487169 ATACCTAATGCACCACAAGAGTGAA
1 ATACCTAATACACCACAAGAGTGAA
*
64487194 ATACGTAATACACCACAAGAGTGAA
1 ATACCTAATACACCACAAGAGTGAA
64487219 A
1 A
64487220 CCTTTGATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.47, C:0.22, G:0.16, T:0.16
Consensus pattern (25 bp):
ATACCTAATACACCACAAGAGTGAA
Found at i:64489343 original size:48 final size:48
Alignment explanation
Indices: 64489124--64489350 Score: 200
Period size: 48 Copynumber: 4.8 Consensus size: 48
64489114 GTTGTGTAAA
*
64489124 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCGATATGTA-
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG-AG
**** * *
64489172 ATTTTGTGTAAAACCATAGT-TGGG-C-T---ATCGGCATCGATATGAG
1 ATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATATGAG
* * * *
64489215 ATCCCATGTAAGACCATGTCTAGAACATGGCATTGGCATTGATCT-ACG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGA-G
* ** *
64489263 ATCCTACATAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAG
* * * *
64489311 ATCCCATGTAAGACCATATCCGGGATACGGCATTGGCATC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
64489351 CTACTATGTT
Statistics
Matches: 137, Mismatches: 32, Indels: 20
0.72 0.17 0.11
Matches are distributed among these distances:
42 3 0.02
43 27 0.20
44 1 0.01
45 1 0.01
46 1 0.01
47 2 0.01
48 100 0.73
49 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (48 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAG
Found at i:64492301 original size:41 final size:41
Alignment explanation
Indices: 64492256--64492426 Score: 263
Period size: 41 Copynumber: 4.2 Consensus size: 41
64492246 TATCTAAATC
* * *
64492256 AATGAAAAGGATGAAAAGGATGTTATTCGAAAAGGATATCA
1 AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
* *
64492297 AATGAAAAGGTTGAAAAAGAAGTTATCCAAAAAGGATATCA
1 AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
64492338 AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
1 AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
* * *
64492379 AATGAAAAGG-TAAAAAGGATGTTATCCAAAAAGTATAACA
1 AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
64492419 AATGAAAA
1 AATGAAAA
64492427 TGACATATTT
Statistics
Matches: 120, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
40 35 0.29
41 85 0.71
ACGTcount: A:0.53, C:0.06, G:0.20, T:0.20
Consensus pattern (41 bp):
AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
Found at i:64494310 original size:17 final size:17
Alignment explanation
Indices: 64494290--64494323 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
64494280 TGTTATTAAA
*
64494290 GGTTAAAATGGTAAAAT
1 GGTTAAAATGATAAAAT
64494307 GGTTAAAATGATAAAAT
1 GGTTAAAATGATAAAAT
64494324 AATTAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (17 bp):
GGTTAAAATGATAAAAT
Found at i:64494329 original size:17 final size:17
Alignment explanation
Indices: 64494292--64494332 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
64494282 TTATTAAAGG
* **
64494292 TTAAAATGGTAAAATGG
1 TTAAAATGATAAAATAA
64494309 TTAAAATGATAAAATAA
1 TTAAAATGATAAAATAA
64494326 TTAAAAT
1 TTAAAAT
64494333 AAAGCCAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32
Consensus pattern (17 bp):
TTAAAATGATAAAATAA
Found at i:64495267 original size:43 final size:43
Alignment explanation
Indices: 64495177--64495344 Score: 144
Period size: 43 Copynumber: 3.9 Consensus size: 43
64495167 TACCGAGAGG
* * * * *
64495177 TGATTACATGTAAGACCATGTATGGGACATTGGCATTG-TATTG
1 TGATTACATGTAAGACTATGTCTGGGACAGTGGCATCGTTA-TA
* * *
64495220 TGATTACTTGTAAGACTATGTCTAGGACATTGGCATCGTTATA
1 TGATTACATGTAAGACTATGTCTGGGACAGTGGCATCGTTATA
* * * * *
64495263 TGATTTCGTATAAGATCCTA--TCTGGGACAGTGGCATCGATACA
1 TGATTACATGTAAGA--CTATGTCTGGGACAGTGGCATCGTTATA
* * *
64495306 TGATAACATGTAAGACTCTATCTGGGACAGTGGCATCGT
1 TGATTACATGTAAGACTATGTCTGGGACAGTGGCATCGT
64495345 ACGAGTTATT
Statistics
Matches: 101, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
41 2 0.02
43 94 0.93
44 2 0.02
45 3 0.03
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (43 bp):
TGATTACATGTAAGACTATGTCTGGGACAGTGGCATCGTTATA
Found at i:64503062 original size:206 final size:204
Alignment explanation
Indices: 64502617--64503107 Score: 743
Period size: 206 Copynumber: 2.4 Consensus size: 204
64502607 CTTCAATTCA
* * *
64502617 TTCTCTAACAATACAGAGATGACAAATCATCTTAGACTTACTTCATCGTAAGCACGTGAAAGCCA
1 TTCTCTGACAATACAGAGATGACAAATCATCTTAGA-TTTCTTCATCGTAAACACGTGAAAGCCA
* *
64502682 AATCAGCTATGTCTTTGATTTGTTCATTGTAAGCACAAGAATGCCAAATCATCTTGGATCTGCTT
65 AATCAGCTATGTCTTCGATTTGTTCATTGTAAGCACAAGAATGCAAAATCATCTTGGATCTGCTT
* * * *
64502747 CAGCATAATCATCTAAAAGTGAGATCTGCTGTGTATCTGCTCTCCATTAAAGTGGAGATGCCGGA
130 CAGCATAATCATCTAAAAGTGAGACCTGCTATGTATCTGCTCCCCATTAAAGTGGAGATGCCAGA
64502812 CTTCGATTTG
195 CTTCGATTTG
64502822 TTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCA
1 TTCTCTGACAATACAGAGATGACAAATCATCTTAGATTT-CTTCATCGTAAACACGTGAAAGCCA
* * *
64502887 AATCAGCTATGTCTTCGATTTGTTCCTTGTAAGTACAAGGATGCAAAATCATCTTGGATCTTGCT
65 AATCAGCTATGTCTTCGATTTGTTCATTGTAAGCACAAGAATGCAAAATCATCTTGGATC-TGCT
* * * *
64502952 TCAGTC-TAATCGTCTGAAGGTCG-GACCTGCTATGTATCTGCTCCCCATTGAAGTGGAGATGCC
129 TCAG-CATAATCATCTAAAAGT-GAGACCTGCTATGTATCTGCTCCCCATTAAAGTGGAGATGCC
64503015 AGACTTCGATTTG
192 AGACTTCGATTTG
* *
64503028 TTCTCTGACAATACAGAGACGACAAATCATCTTAGAATTTCTTCATCGTAAACACATGAAAGCCA
1 TTCTCTGACAATACAGAGATGACAAATCATCTTAG-ATTTCTTCATCGTAAACACGTGAAAGCCA
*
64503093 AATCAGCTATATCTT
65 AATCAGCTATGTCTT
64503108 TGTTCTGCTC
Statistics
Matches: 262, Mismatches: 19, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
204 2 0.01
205 114 0.44
206 140 0.53
207 6 0.02
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (204 bp):
TTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTCTTCATCGTAAACACGTGAAAGCCAA
ATCAGCTATGTCTTCGATTTGTTCATTGTAAGCACAAGAATGCAAAATCATCTTGGATCTGCTTC
AGCATAATCATCTAAAAGTGAGACCTGCTATGTATCTGCTCCCCATTAAAGTGGAGATGCCAGAC
TTCGATTTG
Found at i:64511226 original size:15 final size:14
Alignment explanation
Indices: 64511184--64511233 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
64511174 ATGACTTTGA
*
64511184 ATGCAAATGATGTG
1 ATGCAAATGATGAG
64511198 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
64511213 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
64511227 ATGCAAA
1 ATGCAAA
64511234 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:64514202 original size:40 final size:39
Alignment explanation
Indices: 64514061--64514281 Score: 300
Period size: 40 Copynumber: 5.6 Consensus size: 39
64514051 TCCTCGTTCA
* * * * *
64514061 AATGCCTTCGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACG
* *
64514099 AATGCCTTCGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACG
64514138 AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACG
64514177 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
* * *
64514217 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
* *
64514257 AAGGCCTTCGGATCTTAATCCGGAT
1 AATGCCTTCGGA-CTTAACCCGGAT
64514282 ATATTCACTT
Statistics
Matches: 168, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
38 33 0.20
39 49 0.29
40 86 0.51
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:64514320 original size:40 final size:40
Alignment explanation
Indices: 64514064--64514320 Score: 267
Period size: 40 Copynumber: 6.5 Consensus size: 40
64514054 TCGTTCAAAT
* * * * * *
64514064 GCCTTC-GGACATAGCCCGGTTTTAGTAACTCACAC-AAT
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAAA
* * *
64514102 GCCTTC-GGACATAACCCGGATTTAACAACTCGCACGAAT
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAAA
*
64514141 GCCTTC-GGACTTAACCCGGATTTAATAACTCGCACGAAT
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAAA
*
64514180 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAAT
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAAA
* *
64514220 GCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC-AAA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAAA
* * * * *
64514259 GGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-AAA
1 -GCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACGAAA
*
64514300 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
64514321 CAGCATTCAA
Statistics
Matches: 195, Mismatches: 18, Indels: 10
0.87 0.08 0.04
Matches are distributed among these distances:
38 30 0.15
39 51 0.26
40 103 0.53
41 11 0.06
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAAA
Found at i:64521757 original size:40 final size:40
Alignment explanation
Indices: 64521659--64521921 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
64521649 TCCTCGTTCA
* * * * *
64521659 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
64521698 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCATG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
64521738 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
64521778 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
64521818 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
64521858 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
64521898 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
64521922 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 36 0.18
40 154 0.78
41 8 0.04
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:64531761 original size:24 final size:24
Alignment explanation
Indices: 64531711--64531774 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
64531701 TTTGAATACC
* *
64531711 CACACGGGCTGGGACACGGGTAAA
1 CACACGGGCTGGGACACGAGCAAA
**
64531735 CACACGGGCTGGGACACGAGCGGA
1 CACACGGGCTGGGACACGAGCAAA
*
64531759 CACACGGGCTGAGACA
1 CACACGGGCTGGGACA
64531775 TAACCGTGTG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.28, C:0.28, G:0.38, T:0.06
Consensus pattern (24 bp):
CACACGGGCTGGGACACGAGCAAA
Found at i:64531815 original size:18 final size:18
Alignment explanation
Indices: 64531792--64531830 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
64531782 GTGACCCCTA
64531792 TTTTCC-AAATTTTCATGT
1 TTTTCCAAAATTTTC-TGT
64531810 TTTTCCAAAATTTTCTGT
1 TTTTCCAAAATTTTCTGT
64531828 TTT
1 TTT
64531831 GTTTCTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.21, C:0.15, G:0.05, T:0.59
Consensus pattern (18 bp):
TTTTCCAAAATTTTCTGT
Found at i:64539214 original size:16 final size:16
Alignment explanation
Indices: 64539165--64539216 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
64539155 AAACTAAGTT
*
64539165 AAATTAAT-TAAATGTA
1 AAATTAATCTAAATG-C
**
64539181 AAATTAATCCCGAATGC
1 AAATTAAT-CTAAATGC
64539198 AAATTAATCTAAATGC
1 AAATTAATCTAAATGC
64539214 AAA
1 AAA
64539217 GTATGATAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
16 17 0.59
17 8 0.28
18 4 0.14
ACGTcount: A:0.52, C:0.12, G:0.08, T:0.29
Consensus pattern (16 bp):
AAATTAATCTAAATGC
Done.