Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 20 of 344
Found at i:7130977 original size:118 final size:118
Alignment explanation
Indices: 7130821--7131051 Score: 372
Period size: 118 Copynumber: 2.0 Consensus size: 118
7130811 TATTTCCGGT
7130821 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCAAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCAAAGTAGAATGACAACCCAAGCAC
* * *
7130886 CCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACCTCGGC
66 CCTACCCCGATTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
**** *
7130939 TAGCGGAGTTTTACTTGTCACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCAAAGTAGAATGACAACCCAAGCAC
**
7131004 CCTACCCCGATTACTCAGTCAGTCACGATCTAAGCTGTACTCATAACC
66 CCTACCCCGATTACTCAGTCAGTCACGATCTAAGCCATACTCATAACC
7131052 ATGGAAAACA
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
118 103 1.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (118 bp):
TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCAAAGTAGAATGACAACCCAAGCAC
CCTACCCCGATTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
Found at i:7132024 original size:7 final size:7
Alignment explanation
Indices: 7132012--7132073 Score: 51
Period size: 7 Copynumber: 8.9 Consensus size: 7
7132002 AAATAAAATA
7132012 AAATAAT
1 AAATAAT
7132019 AAATAAT
1 AAATAAT
7132026 AAATAAT
1 AAATAAT
7132033 AAA-AGA-
1 AAATA-AT
*
7132039 AAATAAAGGA
1 AAAT-AA--T
7132049 AAATAAT
1 AAATAAT
7132056 AAATAA-
1 AAATAAT
7132062 AAATAA-
1 AAATAAT
7132068 AAATAA
1 AAATAA
7132074 AGATTGGGTT
Statistics
Matches: 48, Mismatches: 1, Indels: 13
0.77 0.02 0.21
Matches are distributed among these distances:
6 16 0.33
7 25 0.52
8 1 0.02
9 2 0.04
10 4 0.08
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (7 bp):
AAATAAT
Found at i:7132036 original size:27 final size:29
Alignment explanation
Indices: 7132003--7132076 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 29
7131993 ATTTAACTAA
*
7132003 AATAAAATAAAAT-AA-TAAATAATAAAT
1 AATAAAATAAAATAAAGAAAATAATAAAT
*
7132030 AATAAAAGAAAATAAAGGAAAATAATAAAT
1 AATAAAATAAAATAAA-GAAAATAATAAAT
7132060 -A-AAAATAAAAATAAAGA
1 AATAAAAT-AAAATAAAGA
7132077 TTGGGTTGCC
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
27 12 0.30
28 8 0.20
29 9 0.22
30 11 0.28
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (29 bp):
AATAAAATAAAATAAAGAAAATAATAAAT
Found at i:7132055 original size:30 final size:29
Alignment explanation
Indices: 7132019--7132075 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 29
7132009 ATAAAATAAT
7132019 AAATAATAAATAATAAA-AGAAAATAAAGGA
1 AAATAATAAATAA-AAATA-AAAATAAAGGA
7132049 AAATAATAAATAAAAATAAAAATAAAG
1 AAATAATAAATAAAAATAAAAATAAAG
7132076 ATTGGGTTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.18
Consensus pattern (29 bp):
AAATAATAAATAAAAATAAAAATAAAGGA
Found at i:7137057 original size:80 final size:80
Alignment explanation
Indices: 7136970--7137126 Score: 278
Period size: 80 Copynumber: 2.0 Consensus size: 80
7136960 CCTCCAATTG
* * *
7136970 TCTTACTTGTAAAACTTTAATATTTGTGTTTATTTTATAAACTTTGTTATCTTTGATTGAATGTC
1 TCTTACTTGTAAAACTTTAAAATTTGTGTTAATTTTATAAACTTTGTTATCTTTGATTGAATATC
7137035 ATGTTTTTATGGAGC
66 ATGTTTTTATGGAGC
*
7137050 TCTTACTTGTAAAACTTTAAAATTTGTGTTAATTTTATAAACTTTGTTTTCTTTGATTGAATATC
1 TCTTACTTGTAAAACTTTAAAATTTGTGTTAATTTTATAAACTTTGTTATCTTTGATTGAATATC
7137115 ATGTTTTTATGG
66 ATGTTTTTATGG
7137127 GGACTTGAGA
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 73 1.00
ACGTcount: A:0.26, C:0.08, G:0.13, T:0.53
Consensus pattern (80 bp):
TCTTACTTGTAAAACTTTAAAATTTGTGTTAATTTTATAAACTTTGTTATCTTTGATTGAATATC
ATGTTTTTATGGAGC
Found at i:7157595 original size:16 final size:16
Alignment explanation
Indices: 7157562--7157595 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7157552 TCTCATTGTT
* *
7157562 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
7157578 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
7157594 AA
1 AA
7157596 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:7160422 original size:21 final size:21
Alignment explanation
Indices: 7160396--7160436 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7160386 AGACGAGCAA
* *
7160396 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
7160417 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
7160437 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:7162375 original size:16 final size:16
Alignment explanation
Indices: 7162342--7162375 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7162332 GGAGATTGTT
* *
7162342 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
7162358 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
7162374 AA
1 AA
7162376 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:7167828 original size:19 final size:21
Alignment explanation
Indices: 7167788--7167828 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7167778 ACACTTTAAC
*
7167788 ACATTCACAAGCCAATCCAAG
1 ACATTCACAAACCAATCCAAG
7167809 ACATTCA-AAACCAA-CCAAG
1 ACATTCACAAACCAATCCAAG
7167828 A
1 A
7167829 TCAAGTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.32
20 6 0.32
21 7 0.37
ACGTcount: A:0.49, C:0.32, G:0.07, T:0.12
Consensus pattern (21 bp):
ACATTCACAAACCAATCCAAG
Found at i:7168615 original size:25 final size:25
Alignment explanation
Indices: 7168587--7168644 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
7168577 GCCCTCTCTC
* **
7168587 GAGCCATATAACGGGAAGCTCATGT
1 GAGCCATATAACGGGAAACTCATAA
* *
7168612 GAGCCATGTATCGGGAAACTCATAA
1 GAGCCATATAACGGGAAACTCATAA
7168637 GAGCCATA
1 GAGCCATA
7168645 ATCAGAAAGC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACGGGAAACTCATAA
Found at i:7170956 original size:21 final size:21
Alignment explanation
Indices: 7170926--7170965 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7170916 ACTGTATTGG
7170926 TAGCTCTGCTGCAATTACTGA
1 TAGCTCTGCTGCAATTACTGA
* *
7170947 TAGCTTTGCTGTAATTACT
1 TAGCTCTGCTGCAATTACT
7170966 AAATAGCGCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (21 bp):
TAGCTCTGCTGCAATTACTGA
Found at i:7171863 original size:40 final size:40
Alignment explanation
Indices: 7171819--7171896 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
7171809 TCACACTATG
* *
7171819 TGGGGATAAAATCGACCCA-CCTATCCCTGCACACCATATA
1 TGGGGATAAAATCGACCCATCC-AACCCTACACACCATATA
*
7171859 TGGGGATATAATCGACCCATCCAACCCTACACACCATA
1 TGGGGATAAAATCGACCCATCCAACCCTACACACCATA
7171897 ATCGCAGCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 32 0.94
41 2 0.06
ACGTcount: A:0.33, C:0.33, G:0.14, T:0.19
Consensus pattern (40 bp):
TGGGGATAAAATCGACCCATCCAACCCTACACACCATATA
Found at i:7172912 original size:15 final size:15
Alignment explanation
Indices: 7172889--7172918 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7172879 TTAAGCTTAT
7172889 CGAAAAAGAAGAAAA
1 CGAAAAAGAAGAAAA
*
7172904 CGAATAAGAAGAAAA
1 CGAAAAAGAAGAAAA
7172919 ACAGAGAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.07, G:0.20, T:0.03
Consensus pattern (15 bp):
CGAAAAAGAAGAAAA
Found at i:7176504 original size:37 final size:38
Alignment explanation
Indices: 7176454--7176525 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 38
7176444 CAATCACAAC
*
7176454 TATCTCTTTATCCTCCTT-GTACTCAGAACAACTCTCT
1 TATCTCGTTATCCTCCTTGGTACTCAGAACAACTCTCT
* *
7176491 TATCTCGTTATCCTCCTTGGTCCTCAGATCAACTC
1 TATCTCGTTATCCTCCTTGGTACTCAGAACAACTC
7176526 CCTTTTCAGC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
37 17 0.55
38 14 0.45
ACGTcount: A:0.19, C:0.33, G:0.08, T:0.39
Consensus pattern (38 bp):
TATCTCGTTATCCTCCTTGGTACTCAGAACAACTCTCT
Found at i:7177154 original size:20 final size:20
Alignment explanation
Indices: 7177129--7177175 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
7177119 AGGGGCACAC
*
7177129 GCCCGTGTGCCCT-GAGACAT
1 GCCCGTGTGACCTGGA-ACAT
7177149 GCCCGTGTGACCTGGAACAT
1 GCCCGTGTGACCTGGAACAT
*
7177169 GGCCGTG
1 GCCCGTG
7177176 GGGCCAGGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (20 bp):
GCCCGTGTGACCTGGAACAT
Found at i:7181143 original size:41 final size:40
Alignment explanation
Indices: 7181085--7181172 Score: 140
Period size: 41 Copynumber: 2.2 Consensus size: 40
7181075 TAATCCAGAT
* *
7181085 ATTAAGTGAAACATTTCATTAACGCGGAAGCTAAAACATC
1 ATTAAGTGAAACATTTCATTAAAGCGGAAGCAAAAACATC
*
7181125 ATTTAAGTGAAGCATTTCATTAAAGCGGAAGCAAAAACATC
1 A-TTAAGTGAAACATTTCATTAAAGCGGAAGCAAAAACATC
7181166 ATTAAGT
1 ATTAAGT
7181173 CATAAATCAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 7 0.16
41 37 0.84
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.26
Consensus pattern (40 bp):
ATTAAGTGAAACATTTCATTAAAGCGGAAGCAAAAACATC
Found at i:7182091 original size:33 final size:34
Alignment explanation
Indices: 7182031--7182109 Score: 133
Period size: 33 Copynumber: 2.4 Consensus size: 34
7182021 CACACACCCG
*
7182031 TGTGGGTCACACGGCCTAAAGTTGGCCTTGCCCA
1 TGTGGGTCACACGACCTAAAGTTGGCCTTGCCCA
*
7182065 TGTGGGTCACACGACC-CAAGTTGGCCTTGCCCA
1 TGTGGGTCACACGACCTAAAGTTGGCCTTGCCCA
7182098 TGTGGGTCACAC
1 TGTGGGTCACAC
7182110 CGCATGGCCC
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
33 28 0.65
34 15 0.35
ACGTcount: A:0.18, C:0.30, G:0.29, T:0.23
Consensus pattern (34 bp):
TGTGGGTCACACGACCTAAAGTTGGCCTTGCCCA
Found at i:7182748 original size:17 final size:17
Alignment explanation
Indices: 7182698--7182748 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
7182688 GCTTATCAAA
*
7182698 AAAGAAGAAAACGAAGGAG
1 AAAGAA-AAAA-GAAGAAG
7182717 -AAGAAAAATAG-AGAAG
1 AAAGAAAAA-AGAAGAAG
7182733 AAAGAAAAAAGAAGAA
1 AAAGAAAAAAGAAGAA
7182749 AAGAATTTCG
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
16 6 0.21
17 16 0.57
18 6 0.21
ACGTcount: A:0.71, C:0.02, G:0.25, T:0.02
Consensus pattern (17 bp):
AAAGAAAAAAGAAGAAG
Found at i:7186727 original size:21 final size:21
Alignment explanation
Indices: 7186664--7186841 Score: 94
Period size: 21 Copynumber: 8.5 Consensus size: 21
7186654 GGCCGAAGGC
* * *
7186664 TAAACAGAAGCTCATGAGAGC
1 TAAACAAAAGCTCATAAGAGT
*
7186685 T-AACAGAAA-CCCATAA-AGGT
1 TAAACA-AAAGCTCATAAGA-GT
* *
7186705 TGAACAAAAGCTCGTAAGAGT
1 TAAACAAAAGCTCATAAGAGT
* * *
7186726 TGAATAGAAA-CCCATAAGAGT
1 TAAACA-AAAGCTCATAAGAGT
* * * *
7186747 TAAATAAAAGCTTAAAAGAGC
1 TAAACAAAAGCTCATAAGAGT
* * *
7186768 TGAACAGAAGCTCATATGAGT
1 TAAACAAAAGCTCATAAGAGT
* *
7186789 TAAACAGAAGCTCATATGAGT
1 TAAACAAAAGCTCATAAGAGT
* * * *
7186810 TAAACAGAAGCTCGTGAGAGC
1 TAAACAAAAGCTCATAAGAGT
7186831 TAAACAGAAAG
1 TAAACA-AAAG
7186842 TAAACATGAA
Statistics
Matches: 122, Mismatches: 27, Indels: 15
0.74 0.16 0.09
Matches are distributed among these distances:
19 1 0.01
20 17 0.14
21 97 0.80
22 7 0.06
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.18
Consensus pattern (21 bp):
TAAACAAAAGCTCATAAGAGT
Found at i:7186766 original size:42 final size:42
Alignment explanation
Indices: 7186664--7186802 Score: 129
Period size: 42 Copynumber: 3.3 Consensus size: 42
7186654 GGCCGAAGGC
* **
7186664 TAAACAGAAGCTCATGAGAGCT-AACAGAAACCCATAA-AGGT
1 TAAACAAAAGCTCAAAAGAGCTGAACAGAAACCCATAAGA-GT
* ** * *
7186705 TGAACAAAAGCTCGTAAGAGTTGAATAGAAACCCATAAGAGT
1 TAAACAAAAGCTCAAAAGAGCTGAACAGAAACCCATAAGAGT
* * * * *
7186747 TAAATAAAAGCTTAAAAGAGCTGAACAGAAGCTCATATGAGT
1 TAAACAAAAGCTCAAAAGAGCTGAACAGAAACCCATAAGAGT
*
7186789 TAAACAGAAGCTCA
1 TAAACAAAAGCTCA
7186803 TATGAGTTAA
Statistics
Matches: 77, Mismatches: 19, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
41 17 0.22
42 59 0.77
43 1 0.01
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (42 bp):
TAAACAAAAGCTCAAAAGAGCTGAACAGAAACCCATAAGAGT
Found at i:7191018 original size:28 final size:29
Alignment explanation
Indices: 7190987--7191046 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
7190977 AAAGTGATTT
*
7190987 TTGACAAAAATGTCAATT-AG-GGATTAAA
1 TTGACAAAAATGTAAATTGAGAGG-TTAAA
* *
7191015 TTGAGAAAAGTGTAAATTGAGAGGTTAAA
1 TTGACAAAAATGTAAATTGAGAGGTTAAA
7191044 TTG
1 TTG
7191047 TGAAATAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 15 0.56
29 10 0.37
30 2 0.07
ACGTcount: A:0.43, C:0.03, G:0.23, T:0.30
Consensus pattern (29 bp):
TTGACAAAAATGTAAATTGAGAGGTTAAA
Found at i:7191662 original size:47 final size:47
Alignment explanation
Indices: 7191588--7191715 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 47
7191578 GCAAAAAATG
* * * * *
7191588 CCTTGATTTGGCTACCGGCCATAGTATAGGTATTCATAGAGGAGTTA
1 CCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAGAAGTTA
* * * * * *
7191635 CCTTGATTTAGCTGCGGGCTATGGTATAAGTACTCCGAGATAAGTTA
1 CCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAGAAGTTA
*
7191682 CCTTGATTTGGCTTCGGGCCATGGTATAGGTACT
1 CCTTGATTTGGCTACGGGCCATGGTATAGGTACT
7191716 TGTCGATTGA
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.33
Consensus pattern (47 bp):
CCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAGAAGTTA
Found at i:7194229 original size:19 final size:19
Alignment explanation
Indices: 7194179--7194233 Score: 94
Period size: 18 Copynumber: 2.9 Consensus size: 19
7194169 ATAATCTTCA
7194179 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
7194198 ATGAT-TCCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
7194216 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
7194234 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
18 17 0.52
19 16 0.48
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:7194259 original size:22 final size:22
Alignment explanation
Indices: 7194179--7194256 Score: 71
Period size: 18 Copynumber: 3.8 Consensus size: 22
7194169 ATAATCTTCA
7194179 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
7194198 ATGAT-TCCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
7194216 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
7194238 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
7194257 GATTTAATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
18 17 0.34
19 13 0.26
22 8 0.16
23 12 0.24
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:7194546 original size:17 final size:17
Alignment explanation
Indices: 7194522--7194556 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7194512 TGTTTCCCTG
*
7194522 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
7194540 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
7194557 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:7194849 original size:12 final size:12
Alignment explanation
Indices: 7194832--7194858 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7194822 GATGATTTCA
7194832 GTTGGATGTGAT
1 GTTGGATGTGAT
7194844 GTTGGATGTGAT
1 GTTGGATGTGAT
7194856 GTT
1 GTT
7194859 TGTATTCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.41, T:0.44
Consensus pattern (12 bp):
GTTGGATGTGAT
Found at i:7196344 original size:31 final size:31
Alignment explanation
Indices: 7196309--7196369 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
7196299 ACATCCAGAC
*
7196309 GTAAAGAAAAGGGTCGACGTCCTGGCTTTGT
1 GTAAAGAAAAGGGTCGACGTCCTGACTTTGT
7196340 GTAAAGAAAAGGGTCGACGTCCTGACTTTG
1 GTAAAGAAAAGGGTCGACGTCCTGACTTTG
7196370 AGTATTTACG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (31 bp):
GTAAAGAAAAGGGTCGACGTCCTGACTTTGT
Found at i:7206487 original size:78 final size:78
Alignment explanation
Indices: 7206357--7206729 Score: 577
Period size: 78 Copynumber: 4.8 Consensus size: 78
7206347 CGAAGAAACA
* ** * * * *
7206357 GATTTGACATCTCCATATTCGACGGAGATCAGATCGAAGACATAGCAGATCTGACCTTCATTAAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
7206422 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
7206435 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAAATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
7206500 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
7206513 GATTTGGCATCTCTGTATTAGACGGGAAGCAGATCGAAGACACAGCAGATCTAACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
7206578 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
7206591 GATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
*
7206655 AGTAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
7206669 GATTTAGCATCTCTGTATTAGACGGGGAGCAGATTGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
7206730 GTGTTTACAT
Statistics
Matches: 271, Mismatches: 22, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
77 1 0.00
78 269 0.99
79 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:7206873 original size:89 final size:90
Alignment explanation
Indices: 7206752--7206942 Score: 285
Period size: 89 Copynumber: 2.1 Consensus size: 90
7206742 AAGCAAACCT
***
7206752 AAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGAAAATTGGAGATAACAGATTTGGCATC
1 AAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGAAAATCAAAGATAACAGATTTGGCATC
**
7206817 TCTGTATTAGACGGGGAGCAGATTG
66 TCTGTATTAGACGGGGAGCAGATCA
* * * *
7206842 AAGA-AGCAGATTTGGCGTCTTTGTATTAGACGGGGAGCAAATCAAAGATAACAGATTTGGCGTC
1 AAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGAAAATCAAAGATAACAGATTTGGCATC
*
7206906 TCTGTATTAGATGGGGAGCAGATCA
66 TCTGTATTAGACGGGGAGCAGATCA
7206931 AAGATAGCAGAT
1 AAGATAGCAGAT
7206943 ATCACCTTCT
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
89 79 0.88
90 11 0.12
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (90 bp):
AAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGAAAATCAAAGATAACAGATTTGGCATC
TCTGTATTAGACGGGGAGCAGATCA
Found at i:7206913 original size:134 final size:136
Alignment explanation
Indices: 7206669--7206923 Score: 331
Period size: 134 Copynumber: 1.9 Consensus size: 136
7206659 GATCCAAGAT
*
7206669 GATTTAGCATCTCTGTATTAGACGGGGAGCAGATTGAAGACATAGCAGATCTGACCTTCATGTGT
1 GATTTAGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-ATAGCAGATCTGACCGTCATGTGT
* *
7206734 TTACATCGAAGCAAACCTAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGAAAATTGGA
65 TTACATCGAAGCAAACCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGAAAATTGGA
7206799 GATAACA
130 GATAACA
* * * *
7206806 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAG-A-AGCAGATTTG-GCGTC-TTTGTA
1 GATTTAGCATCTCTGTATTAGACGGGGAGCAGATTGAAGAATAGCAGATCTGACCGTCATGTGT-
* * * * *
7206867 TTAGA-CGGGGAGCAAATCAAAGATAACAGATTTGGCGTCTCTGTATTAGATGGGGAG
65 TTACATC--GAAGCAAACCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAG
7206924 CAGATCAAAG
Statistics
Matches: 103, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
132 5 0.05
133 7 0.07
134 52 0.50
135 1 0.01
137 38 0.37
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (136 bp):
GATTTAGCATCTCTGTATTAGACGGGGAGCAGATTGAAGAATAGCAGATCTGACCGTCATGTGTT
TACATCGAAGCAAACCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGAAAATTGGAG
ATAACA
Found at i:7206931 original size:45 final size:45
Alignment explanation
Indices: 7206743--7206942 Score: 249
Period size: 45 Copynumber: 4.5 Consensus size: 45
7206733 TTTACATCGA
* *
7206743 AGCAAACCTAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAAATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGG
* *** *
7206788 AGAAAATTGGAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAAATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGG
* ** * *
7206833 AGCAGATTGAAGA-AGCAGATTTGGCGTCTTTGTATTAGACGGGG
1 AGCAAATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGG
* * *
7206877 AGCAAATCAAAGATAACAGATTTGGCGTCTCTGTATTAGATGGGG
1 AGCAAATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGG
*
7206922 AGCAGATCAAAGATAGCAGAT
1 AGCAAATCAAAGATAGCAGAT
7206943 ATCACCTTCT
Statistics
Matches: 134, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
44 38 0.28
45 96 0.72
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (45 bp):
AGCAAATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:7207316 original size:17 final size:17
Alignment explanation
Indices: 7207296--7207359 Score: 83
Period size: 17 Copynumber: 3.6 Consensus size: 17
7207286 CAATGATATG
7207296 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
7207313 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
*
7207331 CAATATTAGATATGATA
1 CAATCTTAGATATGATA
7207348 TGCAATCTTAGA
1 --CAATCTTAGA
7207360 AGATATGATT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
17 16 0.40
18 15 0.38
19 9 0.22
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:7207334 original size:35 final size:37
Alignment explanation
Indices: 7207288--7207366 Score: 112
Period size: 35 Copynumber: 2.2 Consensus size: 37
7207278 ATAATCTTCA
*
7207288 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATATTAGATATGATAGCAATCTTAGAT
7207324 ATGAT-TGCAATATTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATATTAGATATGATA-GCAATCTTAGAT
7207360 A-GATATG
1 ATGATATG
7207367 ATTTTGTAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
35 21 0.54
36 8 0.21
37 10 0.26
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATATTAGATATGATAGCAATCTTAGAT
Found at i:7207366 original size:17 final size:19
Alignment explanation
Indices: 7207288--7207359 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
7207278 ATAATCTTCA
7207288 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
7207307 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
7207324 ATGAT-TGCAATATTAGAT
1 ATGATATGCAATCTTAGAT
7207342 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
7207360 AGATATGATT
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
17 16 0.33
18 15 0.31
19 17 0.35
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:7207385 original size:22 final size:22
Alignment explanation
Indices: 7207288--7207382 Score: 70
Period size: 17 Copynumber: 4.8 Consensus size: 22
7207278 ATAATCTTCA
7207288 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
7207307 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
7207324 ATGAT-TGCAATATT---AGAT
1 ATGATATGCAATCTTAGAAGAT
7207342 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
7207364 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
7207383 GATTTAATTT
Statistics
Matches: 65, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
17 16 0.25
18 15 0.23
19 14 0.22
22 8 0.12
23 12 0.18
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:7209119 original size:25 final size:25
Alignment explanation
Indices: 7209091--7209142 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
7209081 TTTGGCTTGG
**
7209091 CATTTACTAAGCAATATCGGATATT
1 CATTTACTAAGCAATATCAAATATT
* *
7209116 CATTTATTAGGCAATATCAAATATT
1 CATTTACTAAGCAATATCAAATATT
7209141 CA
1 CA
7209143 AATTATTCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (25 bp):
CATTTACTAAGCAATATCAAATATT
Found at i:7210888 original size:18 final size:18
Alignment explanation
Indices: 7210865--7210902 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
7210855 TAATCTATGA
7210865 GTTCATTTTTCGGATTTG
1 GTTCATTTTTCGGATTTG
*
7210883 GTTCATTTTTTGGATTTG
1 GTTCATTTTTCGGATTTG
7210901 GT
1 GT
7210903 GGTCTCGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.11, C:0.08, G:0.24, T:0.58
Consensus pattern (18 bp):
GTTCATTTTTCGGATTTG
Found at i:7213002 original size:24 final size:24
Alignment explanation
Indices: 7212974--7213020 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7212964 GATATATACC
7212974 AATTCAATCA-ATA-TAAATTCAATA
1 AATTC-ATCACATACTAAA-TCAATA
7212998 AATTCATCACATACTAAATCAAT
1 AATTCATCACATACTAAATCAAT
7213021 CTATTTCAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (24 bp):
AATTCATCACATACTAAATCAATA
Found at i:7213718 original size:18 final size:18
Alignment explanation
Indices: 7213695--7213729 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7213685 CATCTGTTTC
*
7213695 TTTTTCCTTTTTCTTTTT
1 TTTTTCCTTTTGCTTTTT
*
7213713 TTTTTCGTTTTGCTTTT
1 TTTTTCCTTTTGCTTTT
7213730 CTGTATCGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.00, C:0.14, G:0.06, T:0.80
Consensus pattern (18 bp):
TTTTTCCTTTTGCTTTTT
Found at i:7214129 original size:21 final size:21
Alignment explanation
Indices: 7214103--7214144 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7214093 AGTCCTGAGA
7214103 ATGCAACTTTTTTTAATTTGG
1 ATGCAACTTTTTTTAATTTGG
*
7214124 ATGCAAGTTTTTTTAATTTGG
1 ATGCAACTTTTTTTAATTTGG
7214145 TCTTTTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.07, G:0.17, T:0.52
Consensus pattern (21 bp):
ATGCAACTTTTTTTAATTTGG
Found at i:7226929 original size:46 final size:46
Alignment explanation
Indices: 7226869--7227096 Score: 305
Period size: 46 Copynumber: 5.0 Consensus size: 46
7226859 TTTGACGTAA
* * * * * * *
7226869 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGC
* ** * *
7226915 TGCCATGATATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
7226961 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
* * *
7227007 TACCATGGTATCTTTCAACGATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
7227053 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
7227097 AGAGCACACT
Statistics
Matches: 164, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.02
46 160 0.98
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
Found at i:7234139 original size:14 final size:13
Alignment explanation
Indices: 7234104--7234144 Score: 57
Period size: 14 Copynumber: 3.2 Consensus size: 13
7234094 AATATCTTGA
7234104 AAATATTAA-AAC
1 AAATATTAAGAAC
*
7234116 AAGTATTAAGAAC
1 AAATATTAAGAAC
7234129 AAATAATTAAGAAC
1 AAAT-ATTAAGAAC
7234143 AA
1 AA
7234145 TAACAAGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 8 0.32
13 6 0.24
14 11 0.44
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (13 bp):
AAATATTAAGAAC
Found at i:7239236 original size:26 final size:27
Alignment explanation
Indices: 7239207--7239260 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
7239197 ATAAAACAAT
*
7239207 TTAAAATAGATGATATA-TATATAATA
1 TTAAAATAGATAATATATTATATAATA
*
7239233 TTAAAATAGGTAATATATTTATATAATA
1 TTAAAATAGATAATATA-TTATATAATA
7239261 AATACTATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 15 0.62
28 9 0.38
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (27 bp):
TTAAAATAGATAATATATTATATAATA
Found at i:7239400 original size:22 final size:23
Alignment explanation
Indices: 7239341--7239415 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 23
7239331 TTAGTTGTAT
* *
7239341 AAGATAATTTTAAATAAATATACGTA
1 AAGACAATTTAAAAT-AATATA--TA
7239367 AAGACAAGTTTAAAATAATATATA
1 AAGACAA-TTTAAAATAATATATA
*
7239391 AAGA-AATTTAAAATAA-ATATT
1 AAGACAATTTAAAATAATATATA
7239412 AAGA
1 AAGA
7239416 GGCTCAAAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
21 8 0.18
22 10 0.22
23 2 0.04
24 6 0.13
26 12 0.27
27 7 0.16
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.31
Consensus pattern (23 bp):
AAGACAATTTAAAATAATATATA
Found at i:7239471 original size:25 final size:25
Alignment explanation
Indices: 7239443--7239586 Score: 91
Period size: 26 Copynumber: 5.8 Consensus size: 25
7239433 TGTAAAAGTG
7239443 AAATTTAAAATAAATAATATATAAA
1 AAATTTAAAATAAATAATATATAAA
* * *
7239468 AAATTTAAAGTGAATAACATATAAA
1 AAATTTAAAATAAATAATATATAAA
* * * * *
7239493 ACAGTTTAAATTAAATATTATACATGA
1 A-AATTTAAAATAAATAATATATA-AA
* * *
7239520 AAATTTAGATTAGAA-CATATAT--A
1 AAATTTAAAATA-AATAATATATAAA
**
7239543 AAA--TAAAATAAATAATATATAGGG
1 AAATTTAAAATAAATAATATATA-AA
7239567 AAATTTAAAAATAAATAATA
1 AAATTT-AAAATAAATAATA
7239587 ATGAAAATGA
Statistics
Matches: 90, Mismatches: 19, Indels: 18
0.71 0.15 0.14
Matches are distributed among these distances:
20 2 0.02
21 11 0.12
23 4 0.04
24 3 0.03
25 23 0.26
26 30 0.33
27 17 0.19
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (25 bp):
AAATTTAAAATAAATAATATATAAA
Found at i:7240567 original size:17 final size:18
Alignment explanation
Indices: 7240547--7240589 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
7240537 AAAGTAAGTT
7240547 AATAAA-TAAAAAAATAA
1 AATAAAGTAAAAAAATAA
7240564 AATAAAGTAAAAAAATAA
1 AATAAAGTAAAAAAATAA
7240582 ATATAAAG
1 A-ATAAAG
7240590 ATCGAGATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 6 0.25
18 12 0.50
19 6 0.25
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.19
Consensus pattern (18 bp):
AATAAAGTAAAAAAATAA
Found at i:7249511 original size:23 final size:22
Alignment explanation
Indices: 7249460--7249511 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
7249450 CCTCGTCTTT
*
7249460 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
7249482 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
7249505 TTCTTTT
1 TTCTTTT
7249512 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:7254615 original size:29 final size:29
Alignment explanation
Indices: 7254576--7254631 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
7254566 AAAAACTAAA
7254576 TATATAAGGAGTAGATTATAAATTAAAAT
1 TATATAAGGAGTAGATTATAAATTAAAAT
*
7254605 TATATAAGGAGTGGATTATAAATTAAA
1 TATATAAGGAGTAGATTATAAATTAAA
7254632 TTAGTATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (29 bp):
TATATAAGGAGTAGATTATAAATTAAAAT
Found at i:7256970 original size:13 final size:12
Alignment explanation
Indices: 7256952--7256986 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
7256942 TAGGATTTTC
7256952 TTTCTTTTCTCT
1 TTTCTTTTCTCT
*
7256964 ATTTCTTCTCTCT
1 -TTTCTTTTCTCT
7256977 TTTCTTTTCT
1 TTTCTTTTCT
7256987 TTCCTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTCTTTTCTCT
Found at i:7259543 original size:29 final size:29
Alignment explanation
Indices: 7259510--7259567 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
7259500 TTCAATTGTT
7259510 CAACTTAATCAACATTTAAAAATTCACTA
1 CAACTTAATCAACATTTAAAAATTCACTA
7259539 CAACTTAATCAACATTTAAAAATTCACTA
1 CAACTTAATCAACATTTAAAAATTCACTA
7259568 ACATTCTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (29 bp):
CAACTTAATCAACATTTAAAAATTCACTA
Found at i:7259840 original size:23 final size:24
Alignment explanation
Indices: 7259778--7259844 Score: 66
Period size: 23 Copynumber: 2.8 Consensus size: 24
7259768 TTATTTTCTT
*
7259778 TTATTTACTTTAAAATATAATATTA
1 TTATTTA-TTTATAATATAATATTA
* * *
7259803 CTATAT-TTTAGTAAT-TATTATTA
1 TTATTTATTTA-TAATATAATATTA
7259826 TTATTTATTTATAATATAA
1 TTATTTATTTATAATATAA
7259845 GTAAACATAT
Statistics
Matches: 32, Mismatches: 7, Indels: 7
0.70 0.15 0.15
Matches are distributed among these distances:
23 19 0.59
24 9 0.28
25 4 0.12
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.55
Consensus pattern (24 bp):
TTATTTATTTATAATATAATATTA
Found at i:7260942 original size:44 final size:44
Alignment explanation
Indices: 7260865--7260952 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
7260855 AATCAATAGT
* * *
7260865 TAGAGGTAGATTTCATTTGCAAGACTTTGTTGTGTACCCACAAC
1 TAGAGGTAGATTCCATTTGCAAAACTTTATTGTGTACCCACAAC
* **
7260909 TAGAGGTAGATTCCATTTGCAAAATTTTATTGTGTGTCCACAAC
1 TAGAGGTAGATTCCATTTGCAAAACTTTATTGTGTACCCACAAC
7260953 CATTGATAGT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (44 bp):
TAGAGGTAGATTCCATTTGCAAAACTTTATTGTGTACCCACAAC
Found at i:7275211 original size:17 final size:17
Alignment explanation
Indices: 7275189--7275221 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7275179 AAAAATTATT
*
7275189 TAATTTTTATTAAAATA
1 TAATTTTTATGAAAATA
7275206 TAATTTTTATGAAAAT
1 TAATTTTTATGAAAAT
7275222 TGATTGTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (17 bp):
TAATTTTTATGAAAATA
Found at i:7275352 original size:9 final size:9
Alignment explanation
Indices: 7275288--7275352 Score: 58
Period size: 9 Copynumber: 7.0 Consensus size: 9
7275278 CCAAGATACA
7275288 ATAATTTTT
1 ATAATTTTT
*
7275297 ATTATTTTT
1 ATAATTTTT
*
7275306 ATTATTTTT
1 ATAATTTTT
*
7275315 AATATTTTTT
1 -ATAATTTTT
* *
7275325 ACAAATTTTA
1 A-TAATTTTT
*
7275335 ATAAATTTT
1 ATAATTTTT
7275344 ATAATTTTT
1 ATAATTTTT
7275353 GAAAGTTTTT
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
9 31 0.70
10 13 0.30
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (9 bp):
ATAATTTTT
Found at i:7275352 original size:19 final size:19
Alignment explanation
Indices: 7275288--7275352 Score: 69
Period size: 19 Copynumber: 3.5 Consensus size: 19
7275278 CCAAGATACA
*
7275288 ATAATTTTT-ATTATTTTT
1 ATAATTTTTAATAATTTTT
* *
7275306 ATTATTTTTAATATTTTTT
1 ATAATTTTTAATAATTTTT
* * *
7275325 ACAAATTTTAATAAATTTT
1 ATAATTTTTAATAATTTTT
7275344 ATAATTTTT
1 ATAATTTTT
7275353 GAAAGTTTTT
Statistics
Matches: 36, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
18 8 0.22
19 28 0.78
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (19 bp):
ATAATTTTTAATAATTTTT
Found at i:7275464 original size:16 final size:17
Alignment explanation
Indices: 7275429--7275479 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
7275419 AAAAATTATA
7275429 TATATTTATAAATATTT
1 TATATTTATAAATATTT
* *
7275446 TATATTTA-CAATTTTT
1 TATATTTATAAATATTT
*
7275462 TATACTTT-TAATTATTT
1 TATA-TTTATAAATATTT
7275479 T
1 T
7275480 TTAGGTTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
16 10 0.37
17 17 0.63
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (17 bp):
TATATTTATAAATATTT
Found at i:7275895 original size:3 final size:3
Alignment explanation
Indices: 7275887--7275912 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7275877 AGTAAAATTC
7275887 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
7275913 ACCTTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:7278969 original size:28 final size:28
Alignment explanation
Indices: 7278929--7278989 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
7278919 TTAGGTGTTT
* *
7278929 ACTACAACAATTTCCCTTTTCTCTTGAA
1 ACTATAACAATTTCCCTTCTCTCTTGAA
7278957 ACTATAACAATTTCCCTTCTCTCTTGAA
1 ACTATAACAATTTCCCTTCTCTCTTGAA
7278985 ACTAT
1 ACTAT
7278990 CATACGAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.30, C:0.28, G:0.03, T:0.39
Consensus pattern (28 bp):
ACTATAACAATTTCCCTTCTCTCTTGAA
Found at i:7294043 original size:18 final size:18
Alignment explanation
Indices: 7294020--7294055 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7294010 GAGAGGATTT
*
7294020 CCAAGTTCTTGGGTATCA
1 CCAAGTTCTTGGATATCA
7294038 CCAAGTTCTTGGATATCA
1 CCAAGTTCTTGGATATCA
7294056 TCTCTTAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.33
Consensus pattern (18 bp):
CCAAGTTCTTGGATATCA
Found at i:7297207 original size:5 final size:5
Alignment explanation
Indices: 7297197--7297273 Score: 154
Period size: 5 Copynumber: 15.4 Consensus size: 5
7297187 AAGTATGTTA
7297197 CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT
1 CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT
7297247 CATAT CATAT CATAT CATAT CATAT CA
1 CATAT CATAT CATAT CATAT CATAT CA
7297274 CACACACATA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 72 1.00
ACGTcount: A:0.40, C:0.21, G:0.00, T:0.39
Consensus pattern (5 bp):
CATAT
Found at i:7297458 original size:129 final size:125
Alignment explanation
Indices: 7297304--7297572 Score: 425
Period size: 129 Copynumber: 2.1 Consensus size: 125
7297294 TATAATATGA
7297304 ACATATCATACATA-ATAAAGTTAGTTACATATCATGCATATATATT-GAAGTCTGTAACATGCA
1 ACATATCATACATACATAAAGTTAGTTACATATCATGCATATATATTAG-AGTCTGTAACATGCA
* *
7297367 AATTATGACATACATACATATATAATAATATTGACATATCATACATACATTAGATGCATATC
65 AATCATGACATACATACATATATAA-AATATTGACATATCATACATACATTAGACGCATATC
* *
7297429 ACATATCATACATACTTAGTAAAGTTAGTTATATATCATGCATATATATTAGAGTCTGTTACATG
1 ACATATCATACATAC--A-TAAAGTTAGTTACATATCATGCATATATATTAGAGTCTGTAACATG
* *
7297494 CATATCATGACATACATACATATATAAAATATTGACATATCTTACATACATTAGACGCATATC
63 CAAATCATGACATACATACATATATAAAATATTGACATATCATACATACATTAGACGCATATC
7297557 ACATATCATACATACA
1 ACATATCATACATACA
7297573 CATAATCAGA
Statistics
Matches: 133, Mismatches: 6, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
125 14 0.11
126 1 0.01
128 50 0.38
129 67 0.50
130 1 0.01
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.34
Consensus pattern (125 bp):
ACATATCATACATACATAAAGTTAGTTACATATCATGCATATATATTAGAGTCTGTAACATGCAA
ATCATGACATACATACATATATAAAATATTGACATATCATACATACATTAGACGCATATC
Found at i:7305787 original size:40 final size:40
Alignment explanation
Indices: 7305729--7305828 Score: 114
Period size: 40 Copynumber: 2.5 Consensus size: 40
7305719 TGATACATTG
* * *
7305729 ATGGGCTAAGGCCCAACTGTATGACTGATTCCG-TACTGAA
1 ATGGGCTAAGGCCAAACTGTAAG-CTGATTCCGTTACGGAA
7305769 ATGGGCTAAGGCCAAACTG-AAGCTGATTCCGTTACGGAA
1 ATGGGCTAAGGCCAAACTGTAAGCTGATTCCGTTACGGAA
** *
7305808 AAAGGCTTAGGCCCAAACTGT
1 ATGGGCTAAGG-CCAAACTGT
7305829 GATAATGTTC
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
38 9 0.18
39 16 0.31
40 26 0.51
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (40 bp):
ATGGGCTAAGGCCAAACTGTAAGCTGATTCCGTTACGGAA
Found at i:7307334 original size:42 final size:42
Alignment explanation
Indices: 7307286--7307423 Score: 170
Period size: 42 Copynumber: 3.3 Consensus size: 42
7307276 AAACATTTAC
7307286 AGATAAAACTGCTACTGGGTTGTGGATGCACAACATATTTGT
1 AGATAAAACTGCTACTGGGTTGTGGATGCACAACATATTTGT
* * * * *
7307328 AGATAAAATTGCCACTAGGTGGTGGATGCACAACATATTTGC
1 AGATAAAACTGCTACTGGGTTGTGGATGCACAACATATTTGT
* * * * *
7307370 AAATAAAACTG-TCATTGGGTTATGGACGAACAACATATTTGT
1 AGATAAAACTGCT-ACTGGGTTGTGGATGCACAACATATTTGT
7307412 AGATAAAACTGC
1 AGATAAAACTGC
7307424 CACTCTTCCT
Statistics
Matches: 78, Mismatches: 16, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
42 78 1.00
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (42 bp):
AGATAAAACTGCTACTGGGTTGTGGATGCACAACATATTTGT
Found at i:7314286 original size:14 final size:15
Alignment explanation
Indices: 7314262--7314291 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7314252 GGATATCAAA
7314262 ACATGAATTAAGAAC
1 ACATGAATTAAGAAC
7314277 ACAT-AATTAAGAAC
1 ACATGAATTAAGAAC
7314291 A
1 A
7314292 AGTTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.57, C:0.13, G:0.10, T:0.20
Consensus pattern (15 bp):
ACATGAATTAAGAAC
Found at i:7316290 original size:36 final size:36
Alignment explanation
Indices: 7316224--7316293 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 36
7316214 ATTTCAACCC
* * *
7316224 TTTTACAAATTATTTTATTTATTTATTTTTATTTTT
1 TTTTAAAAATCATTTTATTTATTCATTTTTATTTTT
7316260 TTTTAAAAATCATTTTATTTATATCA-TTTTATTT
1 TTTTAAAAATCATTTTATTTAT-TCATTTTTATTT
7316294 CTGCATTTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
36 28 0.93
37 2 0.07
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (36 bp):
TTTTAAAAATCATTTTATTTATTCATTTTTATTTTT
Found at i:7316481 original size:3 final size:3
Alignment explanation
Indices: 7316468--7316510 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
7316458 ATTATCTTAT
* *
7316468 TTA TT- TTA TTA TTA TTA TTA TCA TT- TTA TCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7316511 ATTACATTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
2 4 0.12
3 30 0.88
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:7316487 original size:26 final size:25
Alignment explanation
Indices: 7316439--7316518 Score: 83
Period size: 26 Copynumber: 3.2 Consensus size: 25
7316429 ATGCGTTTTC
**
7316439 CATTTTATTTTATT-TTAAGATTAT
1 CATTTTATTTTATTATTATTATTAT
*
7316463 CTTATTTATTTTATTATTATTATTAT
1 CAT-TTTATTTTATTATTATTATTAT
*
7316489 CATTTTATCATTATTATTATTAATTA-
1 CATTTTAT-TTTATTATTATT-ATTAT
7316515 CATT
1 CATT
7316519 AGTATTACTA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
24 2 0.04
25 16 0.34
26 25 0.53
27 4 0.09
ACGTcount: A:0.30, C:0.06, G:0.01, T:0.62
Consensus pattern (25 bp):
CATTTTATTTTATTATTATTATTAT
Found at i:7316493 original size:20 final size:20
Alignment explanation
Indices: 7316470--7316508 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7316460 TATCTTATTT
*
7316470 ATTTTATTATTATTATTATC
1 ATTTTATCATTATTATTATC
7316490 ATTTTATCATTATTATTAT
1 ATTTTATCATTATTATTAT
7316509 TAATTACATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (20 bp):
ATTTTATCATTATTATTATC
Found at i:7316496 original size:8 final size:9
Alignment explanation
Indices: 7316473--7316519 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
7316463 CTTATTTATT
*
7316473 TTATTATTA
1 TTATTATCA
7316482 TTATTATCA
1 TTATTATCA
7316491 TT-TTATCA
1 TTATTATCA
*
7316499 TTATTATTA
1 TTATTATCA
7316508 TTAATTA-CA
1 TT-ATTATCA
7316517 TTA
1 TTA
7316520 GTATTACTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
8 9 0.27
9 20 0.61
10 4 0.12
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (9 bp):
TTATTATCA
Found at i:7330188 original size:24 final size:24
Alignment explanation
Indices: 7330156--7330202 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
7330146 TTTTCTCTTC
*
7330156 CTATTTCCATTTTGTTCATTATTA
1 CTATTTCCATTTTATTCATTATTA
7330180 CTATTTCCATTTTATTCATTATT
1 CTATTTCCATTTTATTCATTATT
7330203 TCTGCATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.17, G:0.02, T:0.60
Consensus pattern (24 bp):
CTATTTCCATTTTATTCATTATTA
Found at i:7331098 original size:15 final size:15
Alignment explanation
Indices: 7331078--7331111 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
7331068 GGCGAGAGAG
7331078 CACTGGCGTCATCAA
1 CACTGGCGTCATCAA
*
7331093 CACTGGCGTCGTCAA
1 CACTGGCGTCATCAA
7331108 CACT
1 CACT
7331112 AACGACGCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.24, C:0.35, G:0.21, T:0.21
Consensus pattern (15 bp):
CACTGGCGTCATCAA
Found at i:7334343 original size:18 final size:18
Alignment explanation
Indices: 7334322--7334449 Score: 96
Period size: 18 Copynumber: 7.1 Consensus size: 18
7334312 AGTCACTCTT
* *
7334322 TAACAGCCAGTTATTCAG
1 TAACAGTCAATTATTCAG
*
7334340 TAAC-GATAAATTATTCAG
1 TAACAG-TCAATTATTCAG
* *
7334358 TAATAATCAATTATTCAG
1 TAACAGTCAATTATTCAG
* ** **
7334376 TAACAATCTTTTACGCAG
1 TAACAGTCAATTATTCAG
* * *
7334394 TAGCAGTCAGTTATCCAG
1 TAACAGTCAATTATTCAG
* *
7334412 TAACAGTCAGTTATTCAA
1 TAACAGTCAATTATTCAG
*
7334430 TAGCAGTCAATTATTCAG
1 TAACAGTCAATTATTCAG
7334448 TA
1 TA
7334450 CCTTTATTTA
Statistics
Matches: 85, Mismatches: 23, Indels: 4
0.76 0.21 0.04
Matches are distributed among these distances:
17 1 0.01
18 84 0.99
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (18 bp):
TAACAGTCAATTATTCAG
Found at i:7336221 original size:20 final size:20
Alignment explanation
Indices: 7336180--7336217 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
7336170 ATTACAAATG
7336180 CATGTATAATATTTATTACA
1 CATGTATAATATTTATTACA
*
7336200 CATGTAT-ATTTTTATTAC
1 CATGTATAATATTTATTAC
7336218 CACACATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.34, C:0.11, G:0.05, T:0.50
Consensus pattern (20 bp):
CATGTATAATATTTATTACA
Found at i:7348111 original size:44 final size:44
Alignment explanation
Indices: 7348048--7348384 Score: 327
Period size: 44 Copynumber: 7.6 Consensus size: 44
7348038 CATCGTGGCG
* * * **
7348048 AATCTTATCTCCCTGAAGTTGTAATGGAGCAAACCAAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * ** *
7348092 AATCTTATCTCCCTGAAGTTGCAATGGAGTAGATCGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CA
* ** * *
7348137 AATCTTATCTCCCTAAAGTTATAGTGGAGCAGATTAAAACCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * *
7348181 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * * *
7348225 AATCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CA
* *
7348270 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * * * * * * *
7348314 AGTCTAATCTCCCTGGAGCTGTAGTGGAGTAGATTGAAA-CAATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCTACA
*
7348358 AATCCTATAC-CCCTGAAGTTGCAGTGG
1 AATCTTAT-CTCCCTGAAGTTGCAGTGG
7348385 GTTAGAATGA
Statistics
Matches: 240, Mismatches: 49, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
44 164 0.68
45 76 0.32
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.27
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
Found at i:7348324 original size:133 final size:133
Alignment explanation
Indices: 7348083--7348324 Score: 376
Period size: 133 Copynumber: 1.8 Consensus size: 133
7348073 GGAGCAAACC
* *
7348083 AAAGCTACAAATCTTATCTCCCTGAAGTTGCAATGGAGTAGATCGAAGATAGCAAATCTTATCTC
1 AAAGCTACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATCGAAGATAGCAAATCTTATCTC
* * *
7348148 CCTAAAGTTATAGTGGAGCAGATTAAAACCACAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAG
66 CCTAAAGTTACAGTAGAGCAGATTAAAACCACAAATCTAATCTCTCTAAAGTTGCAGTAGAGCAG
7348213 ATT
131 ATT
*
7348216 AAAGCTACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAGCAAATCTTATCTC
1 AAAGCTACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATCGAAGATAGCAAATCTTATCTC
* * * * * *
7348281 TCTGAAGTTGCAGTAGAGCAGATTAAAGCTACAAGTCTAATCTC
66 CCTAAAGTTACAGTAGAGCAGATTAAAACCACAAATCTAATCTC
7348325 CCTGGAGCTG
Statistics
Matches: 97, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
133 97 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (133 bp):
AAAGCTACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATCGAAGATAGCAAATCTTATCTC
CCTAAAGTTACAGTAGAGCAGATTAAAACCACAAATCTAATCTCTCTAAAGTTGCAGTAGAGCAG
ATT
Found at i:7348342 original size:89 final size:89
Alignment explanation
Indices: 7348048--7348382 Score: 338
Period size: 89 Copynumber: 3.8 Consensus size: 89
7348038 CATCGTGGCG
* * *** * * *
7348048 AATCTTATCTCCCTGAAGTTGTAATGGAGCA-AACCAAAGCTACAAATCTTATCTCCCTGAAGTT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAAACCACAAATCTTATCTCTCTGAAGTT
* * * ** *
7348112 GCAATGGAGTAGATCGAAGATAGCA
66 GCAGTAGAGCAGATTAAAGCTA-CA
* *
7348137 AATCTTATCTCCCTAAAGTTATAGTGGAGCAGATT-AAAACCACAAATCTTATCTCTCTAAAGTT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAAACCACAAATCTTATCTCTCTGAAGTT
7348201 GCAGTAGAGCAGATTAAAGCTACA
66 GCAGTAGAGCAGATTAAAGCTACA
* * * *
7348225 AATCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGA-TAGCAAATCTTATCTCTCTGAAGT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAAACCA-CAAATCTTATCTCTCTGAAGT
7348289 TGCAGTAGAGCAGATTAAAGCTACA
65 TGCAGTAGAGCAGATTAAAGCTACA
* * ** * * * * * *
7348314 AGTCTAATCTCCCTGGAGCTGTAGTGGAGTAGATTG-AAACAATAAATCCTATAC-CCCTGAAGT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAAACCACAAATCTTAT-CTCTCTGAAGT
7348377 TGCAGT
65 TGCAGT
7348383 GGGTTAGAAT
Statistics
Matches: 207, Mismatches: 34, Indels: 11
0.82 0.13 0.04
Matches are distributed among these distances:
88 59 0.29
89 147 0.71
90 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (89 bp):
AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAAACCACAAATCTTATCTCTCTGAAGTT
GCAGTAGAGCAGATTAAAGCTACA
Found at i:7348361 original size:133 final size:133
Alignment explanation
Indices: 7348083--7348380 Score: 357
Period size: 133 Copynumber: 2.2 Consensus size: 133
7348073 GGAGCAAACC
* *
7348083 AAAGCTACAAATCTTATCTCCCTGAAGTTGCAATGGAGTAGATCGAAGATAGCAAATCTTATCTC
1 AAAGCAACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATCGAAGATAGCAAATCTTATCTC
* * * * *
7348148 CCTAAAGTTATAGTGGAGCAGATTAAAACCACAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAG
66 CCTAAAGTTACAGTAGAGCAGATTAAAACCACAAATCTAATCTCCCTAAAGCTGCAGTAGAGCAG
7348213 ATT
131 ATT
* * *
7348216 AAAGCTACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAGCAAATCTTATCTC
1 AAAGCAACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATCGAAGATAGCAAATCTTATCTC
* * * * * * ** * * *
7348281 TCTGAAGTTGCAGTAGAGCAGATTAAAGCTACAAGTCTAATCTCCCTGGAGCTGTAGTGGAGTAG
66 CCTAAAGTTACAGTAGAGCAGATTAAAACCACAAATCTAATCTCCCTAAAGCTGCAGTAGAGCAG
7348346 ATT
131 ATT
* *
7348349 GAAA-CAATAAATCCTATAC-CCCTGAAGTTGCA
1 -AAAGCAACAAATCTTAT-CTCCCTGAAGTTGCA
7348381 GTGGGTTAGA
Statistics
Matches: 140, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
133 136 0.97
134 4 0.03
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.27
Consensus pattern (133 bp):
AAAGCAACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATCGAAGATAGCAAATCTTATCTC
CCTAAAGTTACAGTAGAGCAGATTAAAACCACAAATCTAATCTCCCTAAAGCTGCAGTAGAGCAG
ATT
Found at i:7350028 original size:3 final size:3
Alignment explanation
Indices: 7350022--7350068 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
7350012 TTACCTTATT
7350022 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
7350069 TTTGATCATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:7353452 original size:32 final size:31
Alignment explanation
Indices: 7353411--7353477 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 31
7353401 ATGAAAAAGT
7353411 AGTTTCGAGATAATGATATTACGAATCTTGA
1 AGTTTCGAGATAATGATATTACGAATCTTGA
7353442 AGTTGTCGAGATAATGATATTACGAATCTTGA
1 AGTT-TCGAGATAATGATATTACGAATCTTGA
7353474 AGTT
1 AGTT
7353478 CGATTGACAA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 4 0.11
32 31 0.89
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.36
Consensus pattern (31 bp):
AGTTTCGAGATAATGATATTACGAATCTTGA
Found at i:7364561 original size:15 final size:15
Alignment explanation
Indices: 7364526--7364577 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
7364516 TTAAGAATTT
*
7364526 TATTAAATTAT-ATA
1 TATTTAATTATAATA
7364540 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
7364554 TATTTAATAATAAT-
1 TATTTAATTATAATA
7364568 TATGTTAATT
1 TAT-TTAATT
7364578 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:7364586 original size:120 final size:120
Alignment explanation
Indices: 7364441--7365413 Score: 1784
Period size: 120 Copynumber: 8.1 Consensus size: 120
7364431 GGCAGTTGTC
* * * * * *
7364441 TAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATAATTTGAGTAAATTCATATAAGA
1 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
* *
7364506 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
66 ATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
*
7364561 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
1 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
7364626 ATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
66 ATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
*
7364681 TAATAATTATATTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
1 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
7364746 ATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
66 ATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
*
7364801 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
1 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
* *
7364866 ATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAA
66 ATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
7364921 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
1 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
7364986 ATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
66 ATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
*
7365041 TAATAATTATATTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
1 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
7365106 ATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
66 ATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
7365161 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
1 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
* *
7365226 ATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAA
66 ATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
7365281 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
1 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
* *
7365346 ATATTAATTATTAAGAATTTTATTAAATTGTATATTTTAATTAAAATATATTTAA
66 ATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
7365401 TAATAATTATGTT
1 TAATAATTATGTT
7365414 TAAATATGAT
Statistics
Matches: 831, Mismatches: 22, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 831 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (120 bp):
TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
ATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
Found at i:7364670 original size:18 final size:17
Alignment explanation
Indices: 7364642--7364692 Score: 52
Period size: 18 Copynumber: 3.0 Consensus size: 17
7364632 ATTATTAAGA
*
7364642 ATTTCATTAAATTATAT
1 ATTTAATTAAATTATAT
7364659 ATTTTAATTAAA--ATAT
1 A-TTTAATTAAATTATAT
*
7364675 ATTTAATAATAATTATAT
1 ATTTAATTA-AATTATAT
7364693 TAATTTATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
15 7 0.25
16 7 0.25
17 1 0.04
18 13 0.46
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTTAATTAAATTATAT
Found at i:7365030 original size:18 final size:17
Alignment explanation
Indices: 7365002--7365052 Score: 52
Period size: 18 Copynumber: 3.0 Consensus size: 17
7364992 ATTATTAAGA
*
7365002 ATTTCATTAAATTATAT
1 ATTTAATTAAATTATAT
7365019 ATTTTAATTAAA--ATAT
1 A-TTTAATTAAATTATAT
*
7365035 ATTTAATAATAATTATAT
1 ATTTAATTA-AATTATAT
7365053 TAATTTATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
15 7 0.25
16 7 0.25
17 1 0.04
18 13 0.46
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTTAATTAAATTATAT
Found at i:7365653 original size:16 final size:16
Alignment explanation
Indices: 7365632--7365700 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
7365622 GATTAGCTAT
7365632 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
7365648 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
7365665 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
7365681 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
7365697 TACA
1 TACA
7365701 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:7365674 original size:33 final size:32
Alignment explanation
Indices: 7365632--7365700 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
7365622 GATTAGCTAT
7365632 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
7365665 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
7365697 TACA
1 TACA
7365701 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:7366679 original size:16 final size:17
Alignment explanation
Indices: 7366641--7366681 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
7366631 AATAAATAAA
*
7366641 ATAATATATAAATTTAT
1 ATAATATATAAAATTAT
7366658 -TAA-ATATTAAAATTAT
1 ATAATATA-TAAAATTAT
7366674 ATAATATA
1 ATAATATA
7366682 AATATTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
15 3 0.15
16 11 0.55
17 3 0.15
18 3 0.15
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATAATATATAAAATTAT
Found at i:7382049 original size:15 final size:15
Alignment explanation
Indices: 7382031--7382059 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7382021 TAATTTTTAA
7382031 TTATATAATATAAAT
1 TTATATAATATAAAT
7382046 TTATATAATATAAA
1 TTATATAATATAAA
7382060 ATATAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TTATATAATATAAAT
Found at i:7389917 original size:2 final size:2
Alignment explanation
Indices: 7389910--7389952 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
7389900 GTTGCATCTT
7389910 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7389952 T
1 T
7389953 TTCAATACCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:7395161 original size:38 final size:39
Alignment explanation
Indices: 7395080--7395167 Score: 101
Period size: 38 Copynumber: 2.3 Consensus size: 39
7395070 TTATTGATTG
* *
7395080 CATGTTCAA-CATGTCTACTATTTATTTTTGAATTGAAAA
1 CATGTT-AAGCATGTCTACTATTTACTGTTGAATTGAAAA
* *
7395119 CATGTTAAGCATGTTTACTA-TTACTGTTGAACTT-AAAT
1 CATGTTAAGCATGTCTACTATTTACTGTTGAA-TTGAAAA
7395157 CATGTTAAGCA
1 CATGTTAAGCA
7395168 AGTTCATTGC
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
38 25 0.58
39 18 0.42
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (39 bp):
CATGTTAAGCATGTCTACTATTTACTGTTGAATTGAAAA
Found at i:7395431 original size:45 final size:45
Alignment explanation
Indices: 7395340--7395441 Score: 132
Period size: 45 Copynumber: 2.3 Consensus size: 45
7395330 GTACGACTAG
* * * ** *
7395340 TGGTTTATCCATAACGTACTAGCAGCTTTTATCTATACTGATGGA
1 TGGTTCATCCACAACGTACTAGCAGCTTTTATCTACACAAACGGA
*
7395385 TGGTTCATCCACAACGTATTAGCAGCTTTTATCTACACAAACGGA
1 TGGTTCATCCACAACGTACTAGCAGCTTTTATCTACACAAACGGA
*
7395430 TGGTTCACCCAC
1 TGGTTCATCCAC
7395442 CAATATATTT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (45 bp):
TGGTTCATCCACAACGTACTAGCAGCTTTTATCTACACAAACGGA
Found at i:7395686 original size:8 final size:8
Alignment explanation
Indices: 7395673--7395698 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
7395663 TTTAGTGTAT
7395673 TTGGTGAA
1 TTGGTGAA
7395681 TTGGTGAA
1 TTGGTGAA
7395689 TTGGTGAA
1 TTGGTGAA
7395697 TT
1 TT
7395699 AGGGACTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.35, T:0.42
Consensus pattern (8 bp):
TTGGTGAA
Found at i:7401245 original size:16 final size:14
Alignment explanation
Indices: 7401226--7401260 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 14
7401216 CACAAACCTT
7401226 TTTTCCTTTTTCTTC
1 TTTTCCTTTTT-TTC
7401241 ATTTTCCTTTTTTTC
1 -TTTTCCTTTTTTTC
7401256 TTTTC
1 TTTTC
7401261 TACTCAGGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.26
15 3 0.16
16 11 0.58
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTCCTTTTTTTC
Found at i:7401575 original size:16 final size:17
Alignment explanation
Indices: 7401544--7401576 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7401534 TCTTAGTCCA
*
7401544 TTTTCTCTTCTTTCTTT
1 TTTTCTCTTCTCTCTTT
7401561 TTTTCTC-TCTCTCTTT
1 TTTTCTCTTCTCTCTTT
7401577 AACTCAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTCTCTTCTCTCTTT
Found at i:7402602 original size:19 final size:19
Alignment explanation
Indices: 7402573--7402609 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
7402563 TTTTATTAAT
7402573 ATTTTTCTAGTAATGTTTTG
1 ATTTTTCTAGTAAT-TTTTG
7402593 ATTTTT-TAGTAATTTTT
1 ATTTTTCTAGTAATTTTT
7402610 AATAAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 7 0.41
20 6 0.35
ACGTcount: A:0.22, C:0.03, G:0.11, T:0.65
Consensus pattern (19 bp):
ATTTTTCTAGTAATTTTTG
Found at i:7402697 original size:12 final size:12
Alignment explanation
Indices: 7402682--7402723 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
7402672 TATTAATTTT
7402682 ATTTTTAATAAA
1 ATTTTTAATAAA
*
7402694 ATTTATAAT--A
1 ATTTTTAATAAA
7402704 ATTTTTAATAAA
1 ATTTTTAATAAA
*
7402716 AATTTTAA
1 ATTTTTAA
7402724 GTCTTCTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
10 9 0.36
12 16 0.64
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
ATTTTTAATAAA
Found at i:7407020 original size:2 final size:2
Alignment explanation
Indices: 7407010--7407039 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
7407000 TAGACACACC
7407010 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT A
7407040 AGGTACATAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7408523 original size:3 final size:3
Alignment explanation
Indices: 7408515--7408541 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7408505 AGATTAATAA
7408515 GAG GAG GAG GAG GAG GAG GAG GAG GAG
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG
7408542 TTAAGAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.67, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:7408875 original size:15 final size:16
Alignment explanation
Indices: 7408855--7408887 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7408845 GATATTCTTA
7408855 TTATTTTT-AATATAT
1 TTATTTTTAAATATAT
7408870 TTATTTTTGAAATATAT
1 TTATTTTT-AAATATAT
7408887 T
1 T
7408888 AAATTTCAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (16 bp):
TTATTTTTAAATATAT
Found at i:7415674 original size:16 final size:15
Alignment explanation
Indices: 7415646--7415696 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
7415636 TTTAGCTTGC
*
7415646 TTTTTTGAGTTCAGG
1 TTTTTTCAGTTCAGG
7415661 TTTTTTCAGATTCA-G
1 TTTTTTCAG-TTCAGG
*
7415676 TTCTTTTCAGGTTCAGA
1 TT-TTTTCA-GTTCAGG
7415693 TTTT
1 TTTT
7415697 ATCGGGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
15 11 0.37
16 16 0.53
17 3 0.10
ACGTcount: A:0.16, C:0.12, G:0.18, T:0.55
Consensus pattern (15 bp):
TTTTTTCAGTTCAGG
Found at i:7417031 original size:3 final size:3
Alignment explanation
Indices: 7417023--7417052 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7417013 TAGTTTTTTA
7417023 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
7417053 CATGTAACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:7421026 original size:30 final size:30
Alignment explanation
Indices: 7420991--7421050 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
7420981 TATTTTATTA
*
7420991 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
* *
7421021 TTAATTTTATTATTATTTTAGAGGTATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
7421051 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.58
Consensus pattern (30 bp):
TTAATTTTATTATTATTTTAAAGGCATTTG
Found at i:7421937 original size:23 final size:23
Alignment explanation
Indices: 7421896--7421939 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
7421886 ATAAATTATT
7421896 TTTATTACTTTAAATATAAAATA
1 TTTATTACTTTAAATATAAAATA
*
7421919 TTTATTTC-TTAAATCATAAAA
1 TTTATTACTTTAAAT-ATAAAA
7421940 ATAGAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (23 bp):
TTTATTACTTTAAATATAAAATA
Found at i:7428415 original size:6 final size:6
Alignment explanation
Indices: 7428404--7428466 Score: 126
Period size: 6 Copynumber: 10.5 Consensus size: 6
7428394 TAAAAGGAGG
7428404 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
7428452 ATGTGT ATGTGT ATG
1 ATGTGT ATGTGT ATG
7428467 GCAAAGGAGT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 57 1.00
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.49
Consensus pattern (6 bp):
ATGTGT
Found at i:7429025 original size:21 final size:23
Alignment explanation
Indices: 7428944--7429041 Score: 110
Period size: 23 Copynumber: 4.3 Consensus size: 23
7428934 CCAATAGGAA
* * *
7428944 AAGTGATAGTGACATTATGGTGC
1 AAGTGATAGTGGCACTACGGTGC
* *
7428967 AAGTGATAGAGGCACTACGATGC
1 AAGTGATAGTGGCACTACGGTGC
*
7428990 AAGCGATAGTGGCACTACGGTGC
1 AAGTGATAGTGGCACTACGGTGC
*
7429013 AAGTGA-A-TGGCACTTCGGTGC
1 AAGTGATAGTGGCACTACGGTGC
7429034 AAAGTGAT
1 -AAGTGAT
7429042 TTACGCATGT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
21 13 0.21
22 7 0.11
23 43 0.68
ACGTcount: A:0.31, C:0.15, G:0.32, T:0.22
Consensus pattern (23 bp):
AAGTGATAGTGGCACTACGGTGC
Found at i:7431966 original size:23 final size:23
Alignment explanation
Indices: 7431939--7432073 Score: 123
Period size: 23 Copynumber: 6.0 Consensus size: 23
7431929 CCAATAGGAA
7431939 AAGTGATAGTGGCACTACGGTGC
1 AAGTGATAGTGGCACTACGGTGC
* * **
7431962 AAGTGATAGAGGCACCACAATGC
1 AAGTGATAGTGGCACTACGGTGC
* *
7431985 AAGTGATCA-TGGCGCTACGATGC
1 AAGTGAT-AGTGGCACTACGGTGC
* * **
7432008 AAGTGACAGAGGCACTAAAGTGC
1 AAGTGATAGTGGCACTACGGTGC
* *
7432031 AAGCGGTAGTGGCACTACGGTGC
1 AAGTGATAGTGGCACTACGGTGC
*
7432054 AAGTGA-A-TGGCACTTCGGTG
1 AAGTGATAGTGGCACTACGGTG
7432074 GAAAACTTCG
Statistics
Matches: 87, Mismatches: 23, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
21 12 0.14
22 2 0.02
23 72 0.83
24 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.33, T:0.19
Consensus pattern (23 bp):
AAGTGATAGTGGCACTACGGTGC
Found at i:7432003 original size:46 final size:46
Alignment explanation
Indices: 7431939--7432059 Score: 156
Period size: 46 Copynumber: 2.6 Consensus size: 46
7431929 CCAATAGGAA
*
7431939 AAGTGATAGTGGCACTACGGTGCAAGTGATAGAGGCACCACAA-TGC
1 AAGTGATAGTGGCACTACGGTGCAAGTGACAGAGGCACCA-AAGTGC
* * *
7431985 AAGTGATCA-TGGCGCTACGATGCAAGTGACAGAGGCACTAAAGTGC
1 AAGTGAT-AGTGGCACTACGGTGCAAGTGACAGAGGCACCAAAGTGC
* *
7432031 AAGCGGTAGTGGCACTACGGTGCAAGTGA
1 AAGTGATAGTGGCACTACGGTGCAAGTGA
7432060 ATGGCACTTC
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
45 3 0.05
46 60 0.94
47 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.32, T:0.17
Consensus pattern (46 bp):
AAGTGATAGTGGCACTACGGTGCAAGTGACAGAGGCACCAAAGTGC
Found at i:7432083 original size:13 final size:13
Alignment explanation
Indices: 7432065--7432090 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7432055 AGTGAATGGC
7432065 ACTTCGGTGGAAA
1 ACTTCGGTGGAAA
7432078 ACTTCGGTGGAAA
1 ACTTCGGTGGAAA
7432091 GTGATATCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (13 bp):
ACTTCGGTGGAAA
Found at i:7441708 original size:54 final size:54
Alignment explanation
Indices: 7441650--7441764 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
7441640 TAGCATAAGA
* *
7441650 AAAAAAATATTCAAATGACAAATATACCCTTTAATAGA-TTTTTTGTAAAAGTAT
1 AAAAAAATACTCAAATGACAAATATACCCTTTAATA-ATTTTTTTGTAAAAATAT
* * *
7441704 AAAAAAATACTCAAATGACCACTATACTCTTTAATAATTTTTTTGTAAAAATAT
1 AAAAAAATACTCAAATGACAAATATACCCTTTAATAATTTTTTTGTAAAAATAT
7441758 AAAAAAA
1 AAAAAAA
7441765 AACTAGAAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
53 1 0.02
54 54 0.98
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.34
Consensus pattern (54 bp):
AAAAAAATACTCAAATGACAAATATACCCTTTAATAATTTTTTTGTAAAAATAT
Found at i:7444426 original size:8 final size:8
Alignment explanation
Indices: 7444403--7444437 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
7444393 TTATTTTAAT
7444403 TATAATAA
1 TATAATAA
7444411 TAGT-ATAA
1 TA-TAATAA
7444419 TATAATAA
1 TATAATAA
7444427 TATAATAA
1 TATAATAA
7444435 TAT
1 TAT
7444438 TTACTTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 1 0.04
8 23 0.92
9 1 0.04
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (8 bp):
TATAATAA
Found at i:7444690 original size:13 final size:13
Alignment explanation
Indices: 7444672--7444723 Score: 50
Period size: 13 Copynumber: 3.7 Consensus size: 13
7444662 ACTAATTTTG
7444672 TAAATATTTTTAA
1 TAAATATTTTTAA
**
7444685 TAAATATTTACGAA
1 TAAATATTT-TTAA
7444699 TCTGAAATATTTTTAA
1 --T-AAATATTTTTAA
7444715 TAAATATTT
1 TAAATATTT
7444724 ACGAATCCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
13 17 0.55
14 3 0.10
16 3 0.10
17 8 0.26
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (13 bp):
TAAATATTTTTAA
Found at i:7444709 original size:30 final size:30
Alignment explanation
Indices: 7444673--7444730 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
7444663 CTAATTTTGT
7444673 AAATATTTTTAATAAATATTTACGAATCTG
1 AAATATTTTTAATAAATATTTACGAATCTG
7444703 AAATATTTTTAATAAATATTTACGAATC
1 AAATATTTTTAATAAATATTTACGAATC
7444731 CGTTTTACGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (30 bp):
AAATATTTTTAATAAATATTTACGAATCTG
Found at i:7453004 original size:16 final size:16
Alignment explanation
Indices: 7452983--7453051 Score: 66
Period size: 16 Copynumber: 4.1 Consensus size: 16
7452973 TTACAGTATC
7452983 AACATTTGCACTGTAA
1 AACATTTGCACTGTAA
* * *
7452999 AACATTTCCTTTACAGTATC
1 AACATTTGC---ACTGTA-A
*
7453019 ATCATTTGCACTGTAA
1 AACATTTGCACTGTAA
7453035 AACATTTGCACTGTAA
1 AACATTTGCACTGTAA
7453051 A
1 A
7453052 GAGAAAAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
16 24 0.59
17 5 0.12
19 5 0.12
20 7 0.17
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (16 bp):
AACATTTGCACTGTAA
Found at i:7453016 original size:36 final size:36
Alignment explanation
Indices: 7452969--7453041 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
7452959 ACCAAAAAGG
7452969 TCCTTTACAGTATCAACATTTGCACTGTAAAACATT
1 TCCTTTACAGTATCAACATTTGCACTGTAAAACATT
*
7453005 TCCTTTACAGTATCATCATTTGCACTGTAAAACATT
1 TCCTTTACAGTATCAACATTTGCACTGTAAAACATT
7453041 T
1 T
7453042 GCACTGTAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (36 bp):
TCCTTTACAGTATCAACATTTGCACTGTAAAACATT
Found at i:7454739 original size:63 final size:63
Alignment explanation
Indices: 7454657--7454784 Score: 256
Period size: 63 Copynumber: 2.0 Consensus size: 63
7454647 GACTAACAAT
7454657 CTCAATGATTTTTATATATTCCTCATGTTCTCTGAGATCGATGGAAATACATCAAACACTAGA
1 CTCAATGATTTTTATATATTCCTCATGTTCTCTGAGATCGATGGAAATACATCAAACACTAGA
7454720 CTCAATGATTTTTATATATTCCTCATGTTCTCTGAGATCGATGGAAATACATCAAACACTAGA
1 CTCAATGATTTTTATATATTCCTCATGTTCTCTGAGATCGATGGAAATACATCAAACACTAGA
7454783 CT
1 CT
7454785 AGTGCATATT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (63 bp):
CTCAATGATTTTTATATATTCCTCATGTTCTCTGAGATCGATGGAAATACATCAAACACTAGA
Found at i:7469454 original size:19 final size:19
Alignment explanation
Indices: 7469430--7469469 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
7469420 ATAATATAAT
7469430 AATAAAAAGAAAG-AAAAGA
1 AATAAAAA-AAAGAAAAAGA
*
7469449 AATAAAAACAAGAAAAAGA
1 AATAAAAAAAAGAAAAAGA
7469468 AA
1 AA
7469470 CAGAAGCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 3 0.16
19 16 0.84
ACGTcount: A:0.80, C:0.03, G:0.12, T:0.05
Consensus pattern (19 bp):
AATAAAAAAAAGAAAAAGA
Found at i:7471654 original size:14 final size:15
Alignment explanation
Indices: 7471626--7471654 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7471616 TAAATTATTG
7471626 AATTTTATAATGATT
1 AATTTTATAATGATT
7471641 AATTTTAT-ATGATT
1 AATTTTATAATGATT
7471655 CGTGATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (15 bp):
AATTTTATAATGATT
Found at i:7479226 original size:14 final size:15
Alignment explanation
Indices: 7479198--7479226 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7479188 TAAATTACTG
7479198 AATTTTATAATGATT
1 AATTTTATAATGATT
7479213 AATTTTAT-ATGATT
1 AATTTTATAATGATT
7479227 CGTGATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (15 bp):
AATTTTATAATGATT
Found at i:7482897 original size:21 final size:21
Alignment explanation
Indices: 7482871--7482911 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
7482861 TGGGTGGATT
7482871 AGCTCTTACGAGCTTCTGTTA
1 AGCTCTTACGAGCTTCTGTTA
7482892 AGCTCTTACGAGCTTCTGTT
1 AGCTCTTACGAGCTTCTGTT
7482912 CAACTTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.17, C:0.24, G:0.20, T:0.39
Consensus pattern (21 bp):
AGCTCTTACGAGCTTCTGTTA
Found at i:7484497 original size:22 final size:22
Alignment explanation
Indices: 7484467--7484514 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
7484457 TGACAGCCCA
* * *
7484467 TGTCTCGAGACATATAGGCTTT
1 TGTCCCGAGACAAACAGGCTTT
*
7484489 TGTCCCGAGACAAACATGCTTT
1 TGTCCCGAGACAAACAGGCTTT
7484511 TGTC
1 TGTC
7484515 TAAAGACATG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (22 bp):
TGTCCCGAGACAAACAGGCTTT
Found at i:7486134 original size:48 final size:47
Alignment explanation
Indices: 7486065--7486173 Score: 123
Period size: 48 Copynumber: 2.3 Consensus size: 47
7486055 GATAATTTTA
*
7486065 AATTTTCAATATTATTCGATATTATT-TTAATTTATGCAAATT-TAATT
1 AATTTTCAATACTATTCGATATT-TTATTAATTTATG-AAATTATAATT
* * *
7486112 AATTTTGCAATACTATTTGATATTTTATTCATTTATGTAATTATAATT
1 AATTTT-CAATACTATTCGATATTTTATTAATTTATGAAATTATAATT
*
7486160 ACAATTTCAATACT
1 A-ATTTTCAATACT
7486174 GCTTTTTTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
47 12 0.23
48 37 0.70
49 4 0.08
ACGTcount: A:0.36, C:0.08, G:0.05, T:0.51
Consensus pattern (47 bp):
AATTTTCAATACTATTCGATATTTTATTAATTTATGAAATTATAATT
Done.