Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 200 of 344
Found at i:66705846 original size:139 final size:140
Alignment explanation
Indices: 66705635--66705901 Score: 392
Period size: 139 Copynumber: 1.9 Consensus size: 140
66705625 ATATCTATCT
* * * * * *
66705635 AACTATCTAACCATCTAACGAAAGAACTAAAATGTTAAAAAACATTGATTACAAATTTAAAAAGC
1 AACTATCTAAACATCTAACCAAAAAACTAAAATATTAAAAAACATTAATTAAAAATTTAAAAAGC
66705700 TTGAAGCAACATGAAATAAAAAATACAAATATAAGTAAAAGAGAAATCGAACACGAGACTCAAAA
66 TTGAAGCAACATGAAATAAAAAATACAAATATAAGTAAAAGAGAAATCGAACACGAGACTCAAAA
66705765 ATATAGTTGC
131 ATATAGTTGC
* *
66705775 AACTATCTAAACATCTAACCAAAAAACTAATATATT-AAAAATATTAATTAAAAATTTAAAAAGC
1 AACTATCTAAACATCTAACCAAAAAACTAAAATATTAAAAAACATTAATTAAAAATTTAAAAAGC
* * * ** * *
66705839 TTGAAGCAACATGAAATAAAAATTACAAATGTGAGTAGGAGAGGAATCGAACCCGAGACTCAA
66 TTGAAGCAACATGAAATAAAAAATACAAATATAAGTAAAAGAGAAATCGAACACGAGACTCAA
66705902 GGATGAAAAC
Statistics
Matches: 112, Mismatches: 15, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
139 81 0.72
140 31 0.28
ACGTcount: A:0.53, C:0.13, G:0.12, T:0.22
Consensus pattern (140 bp):
AACTATCTAAACATCTAACCAAAAAACTAAAATATTAAAAAACATTAATTAAAAATTTAAAAAGC
TTGAAGCAACATGAAATAAAAAATACAAATATAAGTAAAAGAGAAATCGAACACGAGACTCAAAA
ATATAGTTGC
Found at i:66707289 original size:22 final size:22
Alignment explanation
Indices: 66707261--66707302 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
66707251 GATGTCTGTC
66707261 ATAAAGTACCAATACCTATTTT
1 ATAAAGTACCAATACCTATTTT
* *
66707283 ATAAAGTATCGATACCTATT
1 ATAAAGTACCAATACCTATT
66707303 CCAGTATGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (22 bp):
ATAAAGTACCAATACCTATTTT
Found at i:66710378 original size:19 final size:19
Alignment explanation
Indices: 66710335--66710378 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
66710325 GGGACTAAAT
*
66710335 TGAAAAGTTGTAAAATTTA
1 TGAAAAATTGTAAAATTTA
* *
66710354 TAGAAAAATTTTAAATTTTA
1 T-GAAAAATTGTAAAATTTA
66710374 TGAAA
1 TGAAA
66710379 TACATGGGCT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (19 bp):
TGAAAAATTGTAAAATTTA
Found at i:66711058 original size:26 final size:25
Alignment explanation
Indices: 66711010--66711081 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 25
66711000 CCCGATATAT
*
66711010 GGCTCTTCGGAGCTTCCCGATTAAA
1 GGCTCTTCGGAGCTTCCCAATTAAA
* *
66711035 GGCTCTTTGAGAGCTTCCTAATTAATA
1 GGCTCTTCG-GAGCTTCCCAATTAA-A
* * *
66711062 -GCTCCTCAGAGCTTTCCAAT
1 GGCTCTTCGGAGCTTCCCAAT
66711082 ATTGGCTCGC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
25 18 0.49
26 18 0.49
27 1 0.03
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.32
Consensus pattern (25 bp):
GGCTCTTCGGAGCTTCCCAATTAAA
Found at i:66718811 original size:68 final size:67
Alignment explanation
Indices: 66718644--66718819 Score: 159
Period size: 68 Copynumber: 2.6 Consensus size: 67
66718634 TAGTACCACT
* * *
66718644 CATGCGACCTAGC--CA-ATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTCATCCACTT-G-AT
*
66718706 CACT
64 CACA
* *
66718710 CATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATCCA-TT-
1 CATGCGACCTAGCTACATATATATCT--CGTAGCTCTCTTGTCTACATGGTG-T-CATCCACTTG
66718772 ATCACA
62 ATCACA
*
66718778 CATGTGACCTAGCTACTATATAGTATCTCGTAGC-CTTCTTGT
1 CATGCGACCTAGCTAC-ATATA-TATCTCGTAGCTC-TCTTGT
66718820 ACACATGATG
Statistics
Matches: 91, Mismatches: 9, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
66 13 0.14
67 1 0.01
68 34 0.37
69 9 0.10
70 5 0.05
71 25 0.27
72 4 0.04
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.35
Consensus pattern (67 bp):
CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTCATCCACTTGATCA
CA
Found at i:66721480 original size:43 final size:43
Alignment explanation
Indices: 66721426--66721527 Score: 125
Period size: 43 Copynumber: 2.4 Consensus size: 43
66721416 ACCGAGATGT
* * * *
66721426 GATTACATGTAAGACCATGTCTTGGACATTGGCATTG-TATAGC
1 GATTACGTGTAAGACCATGTCTAGGACATCGGCATCGTTA-AGC
* * *
66721469 GATTATGTGTAAGACCATGTCTAGGGCATCGGCATCGTTAATC
1 GATTACGTGTAAGACCATGTCTAGGACATCGGCATCGTTAAGC
66721512 GATTACGTGTAAGACC
1 GATTACGTGTAAGACC
66721528 TTTTCTGAGA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
43 48 0.96
44 2 0.04
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTAGGACATCGGCATCGTTAAGC
Found at i:66725339 original size:7 final size:7
Alignment explanation
Indices: 66725327--66725394 Score: 82
Period size: 7 Copynumber: 9.6 Consensus size: 7
66725317 CTTACCATCG
66725327 TCTTACT
1 TCTTACT
66725334 TCTTACT
1 TCTTACT
66725341 TCTTACT
1 TCTTACT
66725348 TCTTACT
1 TCTTACT
66725355 TCTTACT
1 TCTTACT
* *
66725362 TCTTTCCC
1 TC-TTACT
* *
66725370 CCTTTCT
1 TCTTACT
66725377 TCTTACT
1 TCTTACT
*
66725384 TCTTCCT
1 TCTTACT
66725391 TCTT
1 TCTT
66725395 TCTCCTTTTC
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
7 48 0.92
8 4 0.08
ACGTcount: A:0.09, C:0.34, G:0.00, T:0.57
Consensus pattern (7 bp):
TCTTACT
Found at i:66725397 original size:21 final size:21
Alignment explanation
Indices: 66725327--66725394 Score: 91
Period size: 21 Copynumber: 3.2 Consensus size: 21
66725317 CTTACCATCG
*
66725327 TCTTACTTCTTACTTCTTACT
1 TCTTACTTCTTACTTCTTCCT
*
66725348 TCTTACTTCTTACTTCTTTCCC
1 TCTTACTTCTTACTTC-TTCCT
* *
66725370 CCTTTCTTCTTACTTCTTCCT
1 TCTTACTTCTTACTTCTTCCT
66725391 TCTT
1 TCTT
66725395 TCTCCTTTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
21 23 0.57
22 17 0.43
ACGTcount: A:0.09, C:0.34, G:0.00, T:0.57
Consensus pattern (21 bp):
TCTTACTTCTTACTTCTTCCT
Found at i:66725409 original size:29 final size:29
Alignment explanation
Indices: 66725348--66725409 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
66725338 ACTTCTTACT
*
66725348 TCTTACTTCTTACTTCTTTCCCCCTTTCT
1 TCTTACTTCTTACTTCTTTCCCCCTTTCC
* * *
66725377 TCTTACTTCTTCCTTCTTTCTCCTTTTCC
1 TCTTACTTCTTACTTCTTTCCCCCTTTCC
66725406 TCTT
1 TCTT
66725410 CCCATCACAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.05, C:0.37, G:0.00, T:0.58
Consensus pattern (29 bp):
TCTTACTTCTTACTTCTTTCCCCCTTTCC
Found at i:66735359 original size:40 final size:40
Alignment explanation
Indices: 66735304--66735382 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
66735294 CAGTTCGATT
66735304 TCAATACAATGGCATG-TCTAACAAGCTTACAATAACATAA
1 TCAATACAATGGCATGCT-TAACAAGCTTACAATAACATAA
* * **
66735344 TCAATTCAATGGCATGCTTAACATGCTTACGGTAACATA
1 TCAATACAATGGCATGCTTAACAAGCTTACAATAACATA
66735383 TTCGGTACAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 33 0.97
41 1 0.03
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (40 bp):
TCAATACAATGGCATGCTTAACAAGCTTACAATAACATAA
Found at i:66738089 original size:20 final size:20
Alignment explanation
Indices: 66738037--66738089 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
66738027 GTTTATCGGG
* *
66738037 TGGAAACTGGATATATGAAA
1 TGGAAACTGGTTAGATGAAA
*
66738057 TGGAAAATGGTTAGATGAAA
1 TGGAAACTGGTTAGATGAAA
*
66738077 TGGAAACTCGTTA
1 TGGAAACTGGTTA
66738090 TTTGTAATGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.42, C:0.06, G:0.26, T:0.26
Consensus pattern (20 bp):
TGGAAACTGGTTAGATGAAA
Found at i:66746181 original size:27 final size:27
Alignment explanation
Indices: 66746151--66746328 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
66746141 ATATTGAGCC
* *
66746151 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
66746178 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
66746205 CGCACACTTAGTGCTACATAGTCAACCT
1 CGCACACTTAGTGCTACATAATCAA-CT
** ** *
66746233 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* * **
66746260 CACACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
66746287 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
66746314 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66746329 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:66756229 original size:80 final size:80
Alignment explanation
Indices: 66756125--66756348 Score: 269
Period size: 79 Copynumber: 2.8 Consensus size: 80
66756115 GCTCCTCGTT
* *
66756125 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
66756190 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* * * *
66756205 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGAG-CTTAGCCTG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCG
*
66756268 GAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
* * * * *
66756284 CAAATGCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCC
66756346 GGA
64 GGA
66756349 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
78 12 0.10
79 55 0.45
80 53 0.43
81 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:66756286 original size:39 final size:40
Alignment explanation
Indices: 66756125--66756348 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
66756115 GCTCCTCGTT
* * *
66756125 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
66756165 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66756205 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
66756245 CAAATGCCTTCGAG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
66756284 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
66756325 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
66756349 CAGCATTCAA
Statistics
Matches: 162, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 1 0.01
39 48 0.30
40 104 0.64
41 9 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:66763583 original size:27 final size:27
Alignment explanation
Indices: 66763544--66763721 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
66763534 TATTTGAGCC
* * *
66763544 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
66763571 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
66763598 CGCACACTTAGTGCTACATAGTCAACCT
1 CGCACACTTAGTGCTACATAGTCAA-CT
** * *
66763626 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
66763653 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
66763680 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAGTC-AACT
66763707 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66763722 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:66763683 original size:82 final size:81
Alignment explanation
Indices: 66763565--66763720 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
66763555 TGCTATATAA
* *
66763565 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTC-AACCTCGC
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAA--TCGC
66763629 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
66763647 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
66763711 CACTTAGTGC
65 CACTTAGTGC
66763721 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 16 0.24
82 48 0.73
83 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:66797423 original size:21 final size:23
Alignment explanation
Indices: 66797380--66797423 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
66797370 TATGTTTGGA
66797380 ATGGCATGTATATGGTGAAGTAT
1 ATGGCATGTATATGGTGAAGTAT
*
66797403 ATGGCATGT-TTTGGT-AAGTAT
1 ATGGCATGTATATGGTGAAGTAT
66797424 TGAGCTAGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 5 0.25
23 9 0.45
ACGTcount: A:0.27, C:0.05, G:0.30, T:0.39
Consensus pattern (23 bp):
ATGGCATGTATATGGTGAAGTAT
Found at i:66798464 original size:79 final size:79
Alignment explanation
Indices: 66798333--66798486 Score: 209
Period size: 79 Copynumber: 1.9 Consensus size: 79
66798323 GGTACGCTTC
* * * * *
66798333 TACGTTACTCTGTTGATGAAGAATATATGACATCTGATTATGTTAGATTGATTGTTACTAATTCT
1 TACGTTACTCTGTTGATGAAGAATACATAACATCTGAATAGGTTAGACTGATTGTTACTAATTCT
66798398 GATTGATAACCCTT
66 GATTGATAACCCTT
* * * * *
66798412 TACGTTACTTTGTTGATGAGGAATACATAATATCTGAATAGGTTAGACTGATTGTTATTAATTTT
1 TACGTTACTCTGTTGATGAAGAATACATAACATCTGAATAGGTTAGACTGATTGTTACTAATTCT
*
66798477 GATTTATAAC
66 GATTGATAAC
66798487 TGTGCATGTG
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
79 64 1.00
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (79 bp):
TACGTTACTCTGTTGATGAAGAATACATAACATCTGAATAGGTTAGACTGATTGTTACTAATTCT
GATTGATAACCCTT
Found at i:66799008 original size:15 final size:15
Alignment explanation
Indices: 66798967--66799012 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
66798957 TCTGCTTTGC
*
66798967 TCTGTTTGGTTCTGT
1 TCTGTTCGGTTCTGT
** *
66798982 TCTACTCCGTTCTGT
1 TCTGTTCGGTTCTGT
66798997 TCTGTTCGGTTCTGT
1 TCTGTTCGGTTCTGT
66799012 T
1 T
66799013 GTACTATTGT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.02, C:0.22, G:0.22, T:0.54
Consensus pattern (15 bp):
TCTGTTCGGTTCTGT
Found at i:66811143 original size:11 final size:11
Alignment explanation
Indices: 66811127--66811155 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
66811117 GTAATGTTGA
66811127 AATATATACAT
1 AATATATACAT
66811138 AATATATACAT
1 AATATATACAT
66811149 -ATATATA
1 AATATATA
66811156 TGAAATAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (11 bp):
AATATATACAT
Found at i:66811271 original size:21 final size:22
Alignment explanation
Indices: 66811218--66811272 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
66811208 AATAATATTA
66811218 AAATAAAATAATAAGTGATAAT
1 AAATAAAATAATAAGTGATAAT
* *
66811240 -AATGAACATAATAGGT-ATAAT
1 AAAT-AAAATAATAAGTGATAAT
*
66811261 AAATAATATAAT
1 AAATAAAATAAT
66811273 GATATATGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 15 0.54
22 13 0.46
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.29
Consensus pattern (22 bp):
AAATAAAATAATAAGTGATAAT
Found at i:66811378 original size:31 final size:33
Alignment explanation
Indices: 66811336--66811411 Score: 84
Period size: 31 Copynumber: 2.3 Consensus size: 33
66811326 TATATGTACT
*
66811336 AATATTAATAATAAATGTAATA-GGGA-TAAAAA
1 AATA-TAATAATAAATATAATATGGGATTAAAAA
* *
66811368 AATATAATAATATATATAATATGGTATTAAAAA
1 AATATAATAATAAATATAATATGGGATTAAAAA
*
66811401 TATATATATAA
1 AATATA-ATAA
66811412 CATAGTATTC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
31 15 0.41
32 7 0.19
33 11 0.30
34 4 0.11
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.34
Consensus pattern (33 bp):
AATATAATAATAAATATAATATGGGATTAAAAA
Found at i:66811591 original size:31 final size:31
Alignment explanation
Indices: 66811556--66811651 Score: 86
Period size: 31 Copynumber: 2.9 Consensus size: 31
66811546 AACATTAAAC
* *
66811556 ATATATACATATA-ATGTATAAAAAATATATA
1 ATATATACACATATAT-AATAAAAAATATATA
*
66811587 ATATATACACATATATAATAAAAAATATTAAA
1 ATATATACACATATATAATAAAAAATA-TATA
66811619 AGTATATACGTAACATATATAATAGAAATAATA
1 A-TATATAC---ACATATATAATA-AAA-AATA
66811652 GTAGTAACTA
Statistics
Matches: 54, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
31 22 0.41
32 6 0.11
33 7 0.13
36 12 0.22
37 3 0.06
38 4 0.07
ACGTcount: A:0.58, C:0.05, G:0.04, T:0.32
Consensus pattern (31 bp):
ATATATACACATATATAATAAAAAATATATA
Found at i:66812442 original size:11 final size:10
Alignment explanation
Indices: 66812417--66812448 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
66812407 TATGTATGCG
66812417 AAAATAAAAA
1 AAAATAAAAA
66812427 AAAATAAAAGA
1 AAAATAAAA-A
66812438 AAAATAAAAA
1 AAAATAAAAA
66812448 A
1 A
66812449 GTAACATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 11 0.52
11 10 0.48
ACGTcount: A:0.88, C:0.00, G:0.03, T:0.09
Consensus pattern (10 bp):
AAAATAAAAA
Found at i:66822898 original size:24 final size:24
Alignment explanation
Indices: 66822867--66822913 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
66822857 CTTTTGGTCT
* *
66822867 GTTTCTTTT-TTGTTTTTCTTGCC
1 GTTTCTTTTATTATTTTACTTGCC
66822890 GTTTGCTTTTATTATTTTACTTGC
1 GTTT-CTTTTATTATTTTACTTGC
66822914 TCCAGTGGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.20
24 5 0.25
25 11 0.55
ACGTcount: A:0.06, C:0.15, G:0.13, T:0.66
Consensus pattern (24 bp):
GTTTCTTTTATTATTTTACTTGCC
Found at i:66824625 original size:3 final size:3
Alignment explanation
Indices: 66824600--66824796 Score: 101
Period size: 3 Copynumber: 67.7 Consensus size: 3
66824590 TTAATTTGAC
* * * *
66824600 ATT ATT ATC ATT ATT -TT AAT ATT ATT ACT ATT ATT ATT -TT ATT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * **
66824646 GTT ATT ATT ATAT ATT ATT ACTT ATT ATT ATT ATT AGT AGT AGT AAC
1 ATT ATT ATT AT-T ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT
* **
66824693 A-T GTT ATT ATT ATT A-T ATAT ATTT ATT ACC ATT -TT -TT ATT -TT
1 ATT ATT ATT ATT ATT ATT AT-T A-TT ATT ATT ATT ATT ATT ATT ATT
* ** *
66824735 -TT ATT ATT ATT AGT AAC A-T ATT GTT ATT -TCT ATT ATT -TT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT
* *
66824777 ATT CTT ATT CTT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT AT
66824797 CATGGTACTA
Statistics
Matches: 150, Mismatches: 30, Indels: 28
0.72 0.14 0.13
Matches are distributed among these distances:
2 18 0.12
3 120 0.80
4 11 0.07
5 1 0.01
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:66824626 original size:23 final size:23
Alignment explanation
Indices: 66824600--66824796 Score: 100
Period size: 23 Copynumber: 8.3 Consensus size: 23
66824590 TTAATTTGAC
* *
66824600 ATTATTATCATTATTTTAATATT
1 ATTATTATTATTATTTTATTATT
* *
66824623 ATTACTATTATTATTTTATTACT
1 ATTATTATTATTATTTTATTATT
* *
66824646 GTTATTATTA-TATATTATTACTT
1 ATTATTATTATTATTTTATTA-TT
** * *
66824669 ATTATTATTATTAGTAGTAGTAACAT
1 ATTATTATTATTA-TTTTA-TTA-TT
* *
66824695 GTTATTATTATTATATATATTTATT
1 ATTATTATTATTAT-TTTA-TTATT
**
66824720 ACCATT-TT-TTATTTT-TTATT
1 ATTATTATTATTATTTTATTATT
* *
66824740 ATTATTAGTAACATATTGTTATT-TCT
1 ATTATTA-TTA-TTATT-TTATTAT-T
*
66824766 ATTATT-TTATTATTCTTATTCTT
1 ATTATTATTATTATT-TTATTATT
66824789 ATTATTAT
1 ATTATTAT
66824797 CATGGTACTA
Statistics
Matches: 131, Mismatches: 29, Indels: 27
0.70 0.16 0.14
Matches are distributed among these distances:
20 9 0.07
22 12 0.09
23 57 0.44
24 12 0.09
25 12 0.09
26 29 0.22
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (23 bp):
ATTATTATTATTATTTTATTATT
Found at i:66824632 original size:20 final size:20
Alignment explanation
Indices: 66824600--66824674 Score: 68
Period size: 17 Copynumber: 3.8 Consensus size: 20
66824590 TTAATTTGAC
66824600 ATTATTA-TCATTATTTTAAT
1 ATTATTACT-ATTATTTTAAT
66824620 ATTATTACTATTA--TT-AT
1 ATTATTACTATTATTTTAAT
* *
66824637 TTTATTACTGTTATTATTATAT
1 ATTATTACTATTATT-TTA-AT
66824659 ATTATTACTTATTATT
1 ATTATTAC-TATTATT
66824675 ATTATTAGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
17 13 0.30
18 2 0.05
20 13 0.30
21 1 0.02
22 9 0.20
23 6 0.14
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.61
Consensus pattern (20 bp):
ATTATTACTATTATTTTAAT
Found at i:66824675 original size:20 final size:20
Alignment explanation
Indices: 66824600--66824681 Score: 84
Period size: 20 Copynumber: 4.2 Consensus size: 20
66824590 TTAATTTGAC
*
66824600 ATTATTATCATTATT-TTAAT
1 ATTATTA-CATTATTATTATT
66824620 ATTATTAC--TATTATTATT
1 ATTATTACATTATTATTATT
*
66824638 -TTATTACTGTTATTATTATAT
1 ATTATTAC-ATTATTATTAT-T
66824659 ATTATTAC-TTATTATTATT
1 ATTATTACATTATTATTATT
66824678 ATTA
1 ATTA
66824682 GTAGTAGTAA
Statistics
Matches: 55, Mismatches: 1, Indels: 13
0.80 0.01 0.19
Matches are distributed among these distances:
17 11 0.20
18 4 0.07
19 6 0.11
20 26 0.47
21 1 0.02
22 7 0.13
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (20 bp):
ATTATTACATTATTATTATT
Found at i:66824676 original size:26 final size:26
Alignment explanation
Indices: 66824619--66824712 Score: 81
Period size: 26 Copynumber: 3.7 Consensus size: 26
66824609 ATTATTTTAA
*
66824619 TATTATTACTATTAT-TATT-TTA-T
1 TATTATTATTATTATATATTATTACT
* *
66824642 TACTGTTATTATTATATATTATTACT
1 TATTATTATTATTATATATTATTACT
* *
66824668 TATTATTATTATTAGTAGTAGTA--ACA
1 TATTATTATTATTA-TA-TATTATTACT
*
66824694 TGTTATTATTATTATATAT
1 TATTATTATTATTATATAT
66824713 ATTTATTACC
Statistics
Matches: 57, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
23 12 0.21
24 6 0.11
25 5 0.09
26 28 0.49
27 2 0.04
28 4 0.07
ACGTcount: A:0.33, C:0.04, G:0.05, T:0.57
Consensus pattern (26 bp):
TATTATTATTATTATATATTATTACT
Found at i:66831541 original size:124 final size:124
Alignment explanation
Indices: 66831315--66831563 Score: 327
Period size: 124 Copynumber: 2.0 Consensus size: 124
66831305 CCTGAAGTTG
* * * * ** **
66831315 CAGTGGAGCAGATTGAAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGTTG
1 CAGTGGAGCAGACTAAAAATTGCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCAAAGACG
* * * * * *
66831380 GCGAATCTTATCTCCATAAATCGACAATGGAGTAAATTTAAGCCACCAGCCTTGTCTCC
66 GCGAATCTTATCCCCATAAAGCGACAATGAAGCAAATTTAAGCCACAAGCCTTATCTCC
*
66831439 CAGTGGAGCAGACTAAAAATTGTAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCAAAGACG
1 CAGTGGAGCAGACTAAAAATTGCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCAAAGACG
** * *
66831504 GCGAATCTTATCCCCATGTAGCGGCAATGAAGCAAATTTAAGCCACAAGTCTTATCTCC
66 GCGAATCTTATCCCCATAAAGCGACAATGAAGCAAATTTAAGCCACAAGCCTTATCTCC
66831563 C
1 C
66831564 TGAAGTTGCA
Statistics
Matches: 106, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
124 106 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (124 bp):
CAGTGGAGCAGACTAAAAATTGCAGATCTTATCTCCCTAAGCAATAGTGGAGCAAATCAAAGACG
GCGAATCTTATCCCCATAAAGCGACAATGAAGCAAATTTAAGCCACAAGCCTTATCTCC
Found at i:66842967 original size:50 final size:50
Alignment explanation
Indices: 66842873--66842971 Score: 137
Period size: 50 Copynumber: 2.0 Consensus size: 50
66842863 CAAGCACCTA
* * *
66842873 TTAAATAGAATCAAATTAATACTAAAATATATATTCAAATAACTATAAAG
1 TTAAATAGAATCAAACTAATACCAAAATATATATTCAAACAACTATAAAG
* *
66842923 TTAAATCA-AATCAAACTAATACCAAAATATATATTCGAGCAACTATAAA
1 TTAAAT-AGAATCAAACTAATACCAAAATATATATTCAAACAACTATAAA
66842972 ATAGAATCTA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
50 42 0.98
51 1 0.02
ACGTcount: A:0.55, C:0.12, G:0.04, T:0.29
Consensus pattern (50 bp):
TTAAATAGAATCAAACTAATACCAAAATATATATTCAAACAACTATAAAG
Found at i:66844370 original size:19 final size:20
Alignment explanation
Indices: 66844346--66844396 Score: 70
Period size: 21 Copynumber: 2.6 Consensus size: 20
66844336 ATTAAGTCCT
66844346 TTTTGGGAAAA-GTGATTAA
1 TTTTGGGAAAATGTGATTAA
*
66844365 TTTTGGAAAATATGTGATTAA
1 TTTTGGGAAA-ATGTGATTAA
66844386 TTTT-GGAAAAT
1 TTTTGGGAAAAT
66844397 ATCTTCATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 11 0.39
20 5 0.18
21 12 0.43
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (20 bp):
TTTTGGGAAAATGTGATTAA
Found at i:66844383 original size:21 final size:21
Alignment explanation
Indices: 66844357--66844398 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
66844347 TTTGGGAAAA
66844357 GTGATTAATTTTGGAAAATAT
1 GTGATTAATTTTGGAAAATAT
66844378 GTGATTAATTTTGGAAAATAT
1 GTGATTAATTTTGGAAAATAT
66844399 CTTCATTGCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (21 bp):
GTGATTAATTTTGGAAAATAT
Found at i:66845031 original size:27 final size:27
Alignment explanation
Indices: 66844983--66845087 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
66844973 GCGAGGCTGC
* *
66844983 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
66845010 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
66845036 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
66845063 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
66845088 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
26 8 0.11
27 60 0.85
28 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:66846703 original size:26 final size:26
Alignment explanation
Indices: 66846673--66846780 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
66846663 TGAAATTCCC
66846673 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
66846699 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
66846725 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
66846751 ATTATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
66846777 ATCA
1 ATCA
66846781 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:66846791 original size:10 final size:10
Alignment explanation
Indices: 66846776--66846801 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
66846766 CCTAACCCAT
66846776 TATCAATTTG
1 TATCAATTTG
66846786 TATCAATTTG
1 TATCAATTTG
66846796 TATCAA
1 TATCAA
66846802 GTGCACATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.46
Consensus pattern (10 bp):
TATCAATTTG
Found at i:66847174 original size:25 final size:25
Alignment explanation
Indices: 66847146--66847198 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
66847136 TCATGAAAGA
66847146 TAAATTTTACCTATGACTAGGTATT
1 TAAATTTTACCTATGACTAGGTATT
*
66847171 TAAATTTTACCTATGACTCGGTATT
1 TAAATTTTACCTATGACTAGGTATT
66847196 TAA
1 TAA
66847199 TTCAAATTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.43
Consensus pattern (25 bp):
TAAATTTTACCTATGACTAGGTATT
Found at i:66848918 original size:6 final size:6
Alignment explanation
Indices: 66848902--66848932 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
66848892 TAAGTTTCCA
*
66848902 AAAATG GAAATG AAAATG AAAATG AAAATG A
1 AAAATG AAAATG AAAATG AAAATG AAAATG A
66848933 TCCATTTGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.19, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:66852014 original size:26 final size:24
Alignment explanation
Indices: 66851958--66852014 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 24
66851948 CAAGACACAT
*
66851958 AGCATAATAACCAAAATGAACTTA
1 AGCATAATAAACAAAATGAACTTA
66851982 AGTCATAATCAAACAAAACTGAA-TTCA
1 AG-CATAAT-AAACAAAA-TGAACTT-A
66852009 AGCATA
1 AGCATA
66852015 GAAGTTAGGC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
24 2 0.07
25 6 0.21
26 13 0.46
27 7 0.25
ACGTcount: A:0.53, C:0.18, G:0.09, T:0.21
Consensus pattern (24 bp):
AGCATAATAAACAAAATGAACTTA
Found at i:66856050 original size:210 final size:210
Alignment explanation
Indices: 66855688--66856066 Score: 722
Period size: 210 Copynumber: 1.8 Consensus size: 210
66855678 ATTCCGTGGA
66855688 AGACGGCAAAGATGTGAGATCGAGGAAAAAAGCCCGTTTGAACCTTAGGAATAGATTAGGATACA
1 AGACGGCAAAGATGTGAGATCGAGGAAAAAAGCCCGTTTGAACCTTAGGAATAGATTAGGATACA
66855753 AGTGACATGTCACTGGGATATTTGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66 AGTGACATGTCACTGGGATATTTGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
* *
66855818 ATGCGAGCGTCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTC
131 ATGCGAACGCCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTC
66855883 GTTGAGTTGAGTCCG
196 GTTGAGTTGAGTCCG
66855898 AGACGGCAAAGATGTGAGATCGAGGAAAAAAGCCCGTTTGAACCTTAGGAATAGATTAGGATACA
1 AGACGGCAAAGATGTGAGATCGAGGAAAAAAGCCCGTTTGAACCTTAGGAATAGATTAGGATACA
66855963 AGTGACATGTCACTGGGATATTTGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66 AGTGACATGTCACTGGGATATTTGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
* *
66856028 ATGCGAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCG
131 ATGCGAACGCCCAAACTCGTTGAGTTGAGTCCGAGTTCG
66856067 CTTATGGGCG
Statistics
Matches: 165, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
210 165 1.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (210 bp):
AGACGGCAAAGATGTGAGATCGAGGAAAAAAGCCCGTTTGAACCTTAGGAATAGATTAGGATACA
AGTGACATGTCACTGGGATATTTGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
ATGCGAACGCCCAAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTC
GTTGAGTTGAGTCCG
Found at i:66864868 original size:17 final size:17
Alignment explanation
Indices: 66864846--66864880 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
66864836 CTCCCGAAAG
66864846 ATAGAAACATAGATGTA
1 ATAGAAACATAGATGTA
66864863 ATAGAAACATAGATGTA
1 ATAGAAACATAGATGTA
66864880 A
1 A
66864881 CTAACTCGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (17 bp):
ATAGAAACATAGATGTA
Found at i:66867673 original size:35 final size:35
Alignment explanation
Indices: 66867487--66867671 Score: 214
Period size: 35 Copynumber: 5.3 Consensus size: 35
66867477 ATAAAGAAAA
* * *
66867487 CCATACTGAGTTGTGAAACTTAGGTATGGTATTAT
1 CCATACTGAGCTATGAAACGTAGGTATGGTATTAT
*
66867522 CCATACTGAGCTATGACACGTAGGTATGGTATTAT
1 CCATACTGAGCTATGAAACGTAGGTATGGTATTAT
* *
66867557 CCATACCGAGCTAT-AATATGTAGGTATGGTATTAT
1 CCATACTGAGCTATGAA-ACGTAGGTATGGTATTAT
* * *
66867592 CCATACCGAGCTAT-AATACGTAGGTATTGTATTTT
1 CCATACTGAGCTATGAA-ACGTAGGTATGGTATTAT
* * *
66867627 CCATA-TCGAGTTATGAAACGGAGGTATGGTATTAA
1 CCATACT-GAGCTATGAAACGTAGGTATGGTATTAT
66867662 CCATACTGAG
1 CCATACTGAG
66867672 TTGTGAATCA
Statistics
Matches: 130, Mismatches: 16, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
34 1 0.01
35 126 0.97
36 3 0.02
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (35 bp):
CCATACTGAGCTATGAAACGTAGGTATGGTATTAT
Found at i:66870371 original size:56 final size:56
Alignment explanation
Indices: 66870285--66870475 Score: 310
Period size: 56 Copynumber: 3.4 Consensus size: 56
66870275 CTATGGCATT
* *
66870285 GATATATGTGTGCGAGGAAGACCATGTTTAATACATTGGCATTGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACCATGTTTAATACATTGGCATCGATATGTGACTCC
*
66870341 GATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACCATGTTTAATACATTGGCATCGATATGTGACTCC
* **
66870397 GATATATGTGTACGAGTAAGACCATGTTTAATATGTTGGCATCGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACCATGTTTAATACATTGGCATCGATATGTGACTCC
* *
66870453 GATTTATGTGTGTGAGTAAGACC
1 GATATATGTGTGCGAGTAAGACC
66870476 CTATCTGGGA
Statistics
Matches: 125, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 125 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCATGTTTAATACATTGGCATCGATATGTGACTCC
Found at i:66870493 original size:56 final size:55
Alignment explanation
Indices: 66870285--66870504 Score: 201
Period size: 56 Copynumber: 3.9 Consensus size: 55
66870275 CTATGGCATT
* * * * * *
66870285 GATATATGTGTGCGAGGAAGACCATGTTTAATACATTGGCATTGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACCCT-ATTAAAACAGTGGCATCGATATGTGACTCC
* *
66870341 GATATATGTGTGCGAGTAAGACCACGT-TTAATACATTGGCATCGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACC-C-TATTAAAACAGTGGCATCGATATGTGACTCC
* * * * *
66870397 GATATATGTGTACGAGTAAGACCATGTTTAATA-TGTTGGCATCGATATGTGACTCC
1 GATATATGTGTGCGAGTAAGACCCT-ATTAAAACAG-TGGCATCGATATGTGACTCC
* * *** *
66870453 GATTTATGTGTGTGAGTAAGACCCTATCTGGGACAGTGGCATCAATATGTGA
1 GATATATGTGTGCGAGTAAGACCCTAT-TAAAACAGTGGCATCGATATGTGA
66870505 TTACATGAAA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.01
55 1 0.01
56 136 0.97
57 1 0.01
58 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (55 bp):
GATATATGTGTGCGAGTAAGACCCTATTAAAACAGTGGCATCGATATGTGACTCC
Found at i:66870493 original size:112 final size:112
Alignment explanation
Indices: 66870285--66870504 Score: 300
Period size: 112 Copynumber: 2.0 Consensus size: 112
66870275 CTATGGCATT
* *
66870285 GATATATGTGTGCGAGGAAGACCATGTTTAATACATTGGCATTGATATGTGACTCCGATATATGT
1 GATATATGTGTACGAGGAAGACCATGTTTAATACATTGGCATCGATATGTGACTCCGATATATGT
* * *
66870350 GTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGACTCC
66 GTGCGAGTAAGACCACGTTTAAGACAGTGGCATCAATATGTGACTCC
* ** *
66870397 GATATATGTGTACGAGTAAGACCATGTTTAATATGTTGGCATCGATATGTGACTCCGATTTATGT
1 GATATATGTGTACGAGGAAGACCATGTTTAATACATTGGCATCGATATGTGACTCCGATATATGT
* **
66870462 GTGTGAGTAAGACC-C-TATCTGGGACAGTGGCATCAATATGTGA
66 GTGCGAGTAAGACCACGT-T-TAAGACAGTGGCATCAATATGTGA
66870505 TTACATGAAA
Statistics
Matches: 94, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
110 1 0.01
111 2 0.02
112 91 0.97
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (112 bp):
GATATATGTGTACGAGGAAGACCATGTTTAATACATTGGCATCGATATGTGACTCCGATATATGT
GTGCGAGTAAGACCACGTTTAAGACAGTGGCATCAATATGTGACTCC
Found at i:66888117 original size:30 final size:30
Alignment explanation
Indices: 66888060--66888117 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
66888050 TAGGCACTTC
* *
66888060 CACACGGGTGATCTACATGCCCATGTGTGA
1 CACACGGGTGAGCTACACGCCCATGTGTGA
*
66888090 CACACGGGTAGAGC-ACACGCCCGTGTGT
1 CACACGGGT-GAGCTACACGCCCATGTGT
66888118 CTTAGCCGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 21 0.88
31 3 0.12
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.19
Consensus pattern (30 bp):
CACACGGGTGAGCTACACGCCCATGTGTGA
Found at i:66890040 original size:24 final size:26
Alignment explanation
Indices: 66890009--66890059 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 26
66889999 TTTTAGGATT
66890009 GTTCTCTTTATC-T-TTTAGGGTTTA
1 GTTCTCTTTATCATATTTAGGGTTTA
*
66890033 GTTCTCTTTTTCATAGTTTAGGGTTTA
1 GTTCTCTTTATCATA-TTTAGGGTTTA
66890060 ATTTCTTGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 11 0.48
25 1 0.04
27 11 0.48
ACGTcount: A:0.14, C:0.12, G:0.18, T:0.57
Consensus pattern (26 bp):
GTTCTCTTTATCATATTTAGGGTTTA
Found at i:66892655 original size:20 final size:21
Alignment explanation
Indices: 66892623--66892683 Score: 90
Period size: 20 Copynumber: 3.0 Consensus size: 21
66892613 TTGTCTAGTA
66892623 AATCCTTAGAAATTTTGGTAT
1 AATCCTTAGAAATTTTGGTAT
*
66892644 AA-CCTTATAAATTTTGGTA-
1 AATCCTTAGAAATTTTGGTAT
*
66892663 AATCCATAGAAATTTTGGTAT
1 AATCCTTAGAAATTTTGGTAT
66892684 GCCAAAATGT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.06
20 31 0.89
21 2 0.06
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (21 bp):
AATCCTTAGAAATTTTGGTAT
Found at i:66892747 original size:20 final size:20
Alignment explanation
Indices: 66892722--66892765 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
66892712 AGCACCAAGA
66892722 AAATCTTTAAAAATATTGGT
1 AAATCTTTAAAAATATTGGT
*
66892742 AAATCTTTAAAAGTATTGGT
1 AAATCTTTAAAAATATTGGT
66892762 AAAT
1 AAAT
66892766 TCTTATAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39
Consensus pattern (20 bp):
AAATCTTTAAAAATATTGGT
Found at i:66892816 original size:20 final size:20
Alignment explanation
Indices: 66892793--66892841 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
66892783 AAGACTTTAT
66892793 AAATTTAGGTAAATCCCTAG
1 AAATTTAGGTAAATCCCTAG
*** *
66892813 AAATACCGGTAAATCCTTAG
1 AAATTTAGGTAAATCCCTAG
66892833 AAATATTAG
1 AAAT-TTAG
66892842 TATCCATAAA
Statistics
Matches: 21, Mismatches: 7, Indels: 1
0.72 0.24 0.03
Matches are distributed among these distances:
20 20 0.95
21 1 0.05
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (20 bp):
AAATTTAGGTAAATCCCTAG
Found at i:66894616 original size:88 final size:88
Alignment explanation
Indices: 66894505--66894669 Score: 244
Period size: 88 Copynumber: 1.9 Consensus size: 88
66894495 GCACTGTCTG
* *
66894505 GTGTGATATTTGTATGTGTTTCATGGAAGCATTGAGAGAACAGGAAGGTTACCTGT-C-CAAAGA
1 GTGTGATATTTGGATGTGTTTCATGGAAGCACTGAGAGAACAGGAAGGTTACCTGTCCTCAAAGA
66894568 GAAAAGAGAAAAGGGTTACTGACCA
66 G--AAGAGAAAAGGGTTACTGACCA
* * **
66894593 GTGTGATATTTGGATGTGTTTCATGGAGGCACTGAGTGAACAGGAAGGTTAGTTGTCCTCAAAGA
1 GTGTGATATTTGGATGTGTTTCATGGAAGCACTGAGAGAACAGGAAGGTTACCTGTCCTCAAAGA
66894658 GAAGAGAAAAGG
66 GAAGAGAAAAGG
66894670 AAGGTTATAG
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
88 61 0.88
89 1 0.01
90 7 0.10
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.25
Consensus pattern (88 bp):
GTGTGATATTTGGATGTGTTTCATGGAAGCACTGAGAGAACAGGAAGGTTACCTGTCCTCAAAGA
GAAGAGAAAAGGGTTACTGACCA
Found at i:66900209 original size:9 final size:9
Alignment explanation
Indices: 66900193--66900225 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
66900183 ATAATTAGAA
66900193 AATTAATTT
1 AATTAATTT
*
66900202 AGTTAATTT
1 AATTAATTT
66900211 AATTAA-TT
1 AATTAATTT
66900219 AATTAAT
1 AATTAAT
66900226 AATATTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (9 bp):
AATTAATTT
Found at i:66904482 original size:16 final size:16
Alignment explanation
Indices: 66904461--66904493 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
66904451 TTCATGTTTT
66904461 AATTATAA-AATAATTA
1 AATTATAATAA-AATTA
66904477 AATTATAATAAAATTA
1 AATTATAATAAAATTA
66904493 A
1 A
66904494 GAACATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AATTATAATAAAATTA
Found at i:66907782 original size:23 final size:23
Alignment explanation
Indices: 66907752--66907806 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
66907742 ATTTTGAACT
66907752 TCTGATAATTTATACATAAAACA
1 TCTGATAATTTATACATAAAACA
66907775 TCTGATAATTTATACATAAAACA
1 TCTGATAATTTATACATAAAACA
*
66907798 TCTGCTAAT
1 TCTGATAAT
66907807 AAATACTGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (23 bp):
TCTGATAATTTATACATAAAACA
Found at i:66913109 original size:46 final size:47
Alignment explanation
Indices: 66913042--66913163 Score: 153
Period size: 46 Copynumber: 2.6 Consensus size: 47
66913032 TGTGTGCTAG
*
66913042 TGTAAGACATGTCTGGGACATGCATCGGCCACATT-ATGAGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCACATTGACGAGAGCCAA
*
66913088 TGTAAGACATGTCTGGGACATGCATC-G--ACATTGAGACGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCACATT--GACGAGAGCCAA
* * *
66913134 TATAAGACATGCCTGAGACATGCATCGGCC
1 TGTAAGACATGTCTGGGACATGCATCGGCC
66913164 TCGAGATATG
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
43 5 0.08
45 1 0.02
46 58 0.89
47 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.20
Consensus pattern (47 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCACATTGACGAGAGCCAA
Found at i:66918298 original size:23 final size:23
Alignment explanation
Indices: 66918242--66918299 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
66918232 CCAATAGCAG
*
66918242 ACTTTTGTTACTAGTAATACATT
1 ACTTTTGTTATTAGTAATACATT
* * * *
66918265 ACTTCTGTTATTAGTACTTCGTT
1 ACTTTTGTTATTAGTAATACATT
66918288 ACTTTTGTTATT
1 ACTTTTGTTATT
66918300 GACACTTTGA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.22, C:0.14, G:0.10, T:0.53
Consensus pattern (23 bp):
ACTTTTGTTATTAGTAATACATT
Found at i:66921028 original size:19 final size:20
Alignment explanation
Indices: 66921001--66921039 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
66920991 TTCATTGTTA
*
66921001 TTAATTTGTGTTGCA-ATTT
1 TTAAATTGTGTTGCATATTT
*
66921020 TTAAATTGTTTTGCATATTT
1 TTAAATTGTGTTGCATATTT
66921040 ATTTGAATCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.23, C:0.05, G:0.13, T:0.59
Consensus pattern (20 bp):
TTAAATTGTGTTGCATATTT
Found at i:66935676 original size:8 final size:8
Alignment explanation
Indices: 66935663--66935688 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
66935653 AAAAATTTAG
66935663 AATAATAA
1 AATAATAA
66935671 AATAATAA
1 AATAATAA
66935679 AATAATAA
1 AATAATAA
66935687 AA
1 AA
66935689 GCTGATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AATAATAA
Found at i:66945562 original size:32 final size:33
Alignment explanation
Indices: 66945526--66945648 Score: 126
Period size: 33 Copynumber: 3.8 Consensus size: 33
66945516 TACACTTGAG
*
66945526 GTGTACAT-TCCTTTCCAAGTGGTACACACAAA
1 GTGTACATAACCTTTCCAAGTGGTACACACAAA
* ** * *
66945558 GTGTACCTTTCCTTTTCATA-TGGTATACACAAA
1 GTGTACATAACCTTTCCA-AGTGGTACACACAAA
* *
66945591 GTATACCTAACCTTTCCAAGT-GTACACACAAA
1 GTGTACATAACCTTTCCAAGTGGTACACACAAA
* *
66945623 GTGTACATAACCTTTTCAAGTCGTAC
1 GTGTACATAACCTTTCCAAGTGGTAC
66945649 CATTTGGGTA
Statistics
Matches: 76, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
32 36 0.47
33 39 0.51
34 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.32
Consensus pattern (33 bp):
GTGTACATAACCTTTCCAAGTGGTACACACAAA
Found at i:66950010 original size:48 final size:48
Alignment explanation
Indices: 66949955--66950571 Score: 1144
Period size: 48 Copynumber: 12.9 Consensus size: 48
66949945 TATATATGTG
* *
66949955 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
66950003 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
66950051 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
66950099 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
66950147 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
66950195 TGTGGTAAAGCGGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
66950243 TGTGGTAAAGCGGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
66950291 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
66950339 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
66950387 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
66950435 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
66950483 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGCATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
66950531 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
66950572 GTGTGTATAT
Statistics
Matches: 557, Mismatches: 12, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 557 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:66950451 original size:28 final size:28
Alignment explanation
Indices: 66950419--66950499 Score: 70
Period size: 28 Copynumber: 3.2 Consensus size: 28
66950409 TGTGAAATAT
66950419 GAATGAGATATGTATATGTGGTAAAGCC
1 GAATGAGATATGTATATGTGGTAAAGCC
* ***
66950447 GAATG-GCTA-G----TGT-G-AAATAT
1 GAATGAGATATGTATATGTGGTAAAGCC
66950467 GAATGAGATATGTATATGTGGTAAAGCC
1 GAATGAGATATGTATATGTGGTAAAGCC
66950495 GAATG
1 GAATG
66950500 GCTAGTGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 16
0.61 0.13 0.26
Matches are distributed among these distances:
20 8 0.22
21 4 0.11
22 4 0.11
26 4 0.11
27 4 0.11
28 13 0.35
ACGTcount: A:0.36, C:0.06, G:0.30, T:0.28
Consensus pattern (28 bp):
GAATGAGATATGTATATGTGGTAAAGCC
Found at i:66950762 original size:37 final size:37
Alignment explanation
Indices: 66950712--66950814 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
66950702 GGAAATATAT
66950712 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
66950749 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
66950786 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
66950815 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:66953195 original size:13 final size:13
Alignment explanation
Indices: 66953179--66953236 Score: 55
Period size: 13 Copynumber: 4.4 Consensus size: 13
66953169 TCACATTTCT
66953179 ATTTCAAGA-ATCC
1 ATTTCAA-ATATCC
66953192 ATTTCAAATATCC
1 ATTTCAAATATCC
* *
66953205 ATTTTCATATAACC
1 A-TTTCAAATATCC
**
66953219 ATTTCTTATATCC
1 ATTTCAAATATCC
66953232 ATTTC
1 ATTTC
66953237 CACAGTATGA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
12 1 0.03
13 27 0.69
14 11 0.28
ACGTcount: A:0.33, C:0.22, G:0.02, T:0.43
Consensus pattern (13 bp):
ATTTCAAATATCC
Found at i:66955409 original size:6 final size:6
Alignment explanation
Indices: 66955391--66955515 Score: 105
Period size: 6 Copynumber: 20.3 Consensus size: 6
66955381 AAGAAACATT
* *
66955391 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
66955440 ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA
*
66955489 ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA AT
66955516 GTGAGTGCAA
Statistics
Matches: 96, Mismatches: 12, Indels: 22
0.74 0.09 0.17
Matches are distributed among these distances:
5 6 0.06
6 78 0.81
7 9 0.09
8 3 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:66955442 original size:31 final size:31
Alignment explanation
Indices: 66955405--66955515 Score: 177
Period size: 31 Copynumber: 3.6 Consensus size: 31
66955395 GAACTAGAAT
* * * *
66955405 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
*
66955436 CAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
66955467 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
66955498 CAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
66955516 GTGAGTGCAA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 76 1.00
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:66955472 original size:19 final size:19
Alignment explanation
Indices: 66955448--66955505 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
66955438 GAATCAGAAT
66955448 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
66955467 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
66955479 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
66955498 CAGAATCA
1 CAGAATCA
66955506 AAATCAGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:66955955 original size:27 final size:27
Alignment explanation
Indices: 66955925--66956166 Score: 290
Period size: 27 Copynumber: 9.0 Consensus size: 27
66955915 ATTACCATTT
* *
66955925 TACCCCACAAGGGTATCTCGGTAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* *
66955952 TACCTTAC-AGGAGTATTTCAGTAATTC
1 TACCCTACAAGG-GTATTTCGGTAATTC
* * *
66955979 TACCCTACAGGGGAATTTCGGTATTTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* *
66956006 TACCCTACAAGGGTATTTCAGAAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* **
66956033 TACCCTACAGGGGTATTTTAGTAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
*
66956060 TACCCTACAGGGGTATTTCGG-AATTTC
1 TACCCTACAAGGGTATTTCGGTAA-TTC
* *
66956087 TACCCTACGAGGGTATTTCGGTATTTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* *
66956114 TACTCTACAAGGGTATTTCGGTATTTC
1 TACCCTACAAGGGTATTTCGGTAATTC
*
66956141 TACCCTACAAGGGTATTTCGATAATT
1 TACCCTACAAGGGTATTTCGGTAATT
66956167 TTATAAATCG
Statistics
Matches: 184, Mismatches: 27, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.03
27 176 0.96
28 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
TACCCTACAAGGGTATTTCGGTAATTC
Found at i:66956042 original size:81 final size:80
Alignment explanation
Indices: 66955921--66956160 Score: 320
Period size: 81 Copynumber: 3.0 Consensus size: 80
66955911 TAAAATTACC
* * *
66955921 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGG-GTATTTCAGTAATTCTACCCT
* *
66955985 ACAGGGGAATTTCGGT
65 ACAGGGGTATTTCGGA
* * *
66956001 ATTTCTACCCTACAAGGGTATTTCAGAAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACA-GGGTATTTCAGTAATTCTACCCT
66956066 ACAGGGGTATTTCGGA
65 ACAGGGGTATTTCGGA
* * * * *
66956082 ATTTCTACCCTACGAGGGTATTTCGGTATTTCTACTCTACAAGGGTATTTCGGTATTTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAC-AGGGTATTTCAGTAATTCTACCCT
*
66956147 ACAAGGGTATTTCG
65 ACAGGGGTATTTCG
66956161 ATAATTTTAT
Statistics
Matches: 140, Mismatches: 17, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
80 4 0.03
81 133 0.95
82 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (80 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGTATTTCAGTAATTCTACCCTA
CAGGGGTATTTCGGA
Found at i:66956180 original size:27 final size:27
Alignment explanation
Indices: 66956148--66956545 Score: 391
Period size: 27 Copynumber: 14.7 Consensus size: 27
66956138 TTCTACCCTA
* * * *
66956148 CAAGGGTATTTCGATAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *** * * *
66956175 CGAGGGTAAAATGGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * **
66956202 CAAGCGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *** ***
66956229 CGAGGGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAC
** * *
66956256 CAAGGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
66956283 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
66956310 TAGGGGTATTTTGATAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
66956337 CAAGGTTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
66956364 TAGGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
66956391 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
**
66956418 CAAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
66956445 CAAAGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
66956472 CAAGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
66956499 TAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
66956526 TAGGGGTATTTTGGTAATTT
1 CAAGGGTATTTTGGTAATTT
66956546 GGTAAACTAA
Statistics
Matches: 310, Mismatches: 61, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 310 1.00
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:66956196 original size:81 final size:81
Alignment explanation
Indices: 66955942--66956196 Score: 221
Period size: 81 Copynumber: 3.1 Consensus size: 81
66955932 CAAGGGTATC
* * * *
66955942 TCGGTAATTCTACCTTAC-AGGAGTATTTCAGTAATTCTACCCTACAGGGGAATTTCGGTATTTC
1 TCGGTAATTCTACCCTACAAGG-GTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGAATTTC
*** * **
66956006 TACCCTACAAGGGTATT
65 TAAAATACGAGGGTAAA
* * * * *
66956023 TCAGAAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGAATTTCT
1 TCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGAATTTCT
*** **
66956088 ACCCTACGAGGGTATT
66 AAAATACGAGGGTAAA
* * * * *
66956104 TCGGTATTTCTACTCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTT-
1 TCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCG-GAATTTC
66956168 TATAAAT-CGAGGGTAAAA
65 TA-AAATACGAGGGT-AAA
66956186 T-GGTAATTCTA
1 TCGGTAATTCTA
66956197 TAAATCAAGC
Statistics
Matches: 146, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
81 136 0.93
82 10 0.07
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (81 bp):
TCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGAATTTCT
AAAATACGAGGGTAAA
Found at i:66958530 original size:6 final size:6
Alignment explanation
Indices: 66958519--66958598 Score: 65
Period size: 6 Copynumber: 13.0 Consensus size: 6
66958509 AATTAGGTGA
* *
66958519 CAGAAT CAGAAT CAGAAT CAGTAT CAGGTAA- CAGAAT CAAAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
* * *
66958568 CAGTAT CAGGTAAT -AGAAA CAAAAT CAGAAT
1 CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
66958599 GTGAATGCAA
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
5 4 0.07
6 46 0.79
7 5 0.09
8 3 0.05
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (6 bp):
CAGAAT
Found at i:66958595 original size:31 final size:31
Alignment explanation
Indices: 66958497--66958598 Score: 132
Period size: 31 Copynumber: 3.3 Consensus size: 31
66958487 TCAGAACTAG
* * * * * *
66958497 AATCAAAATCAGAATTAGGTGACAGAATCAG
1 AATCAGAATCAGTATCAGGTAACAGAAACAA
*
66958528 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAAACAA
*
66958559 AATCAGAATCAGTATCAGGTAATAGAAACAA
1 AATCAGAATCAGTATCAGGTAACAGAAACAA
66958590 AATCAGAAT
1 AATCAGAAT
66958599 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 64 1.00
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAAACAA
Found at i:66959050 original size:27 final size:27
Alignment explanation
Indices: 66959000--66959276 Score: 329
Period size: 27 Copynumber: 10.3 Consensus size: 27
66958990 GGGGTAAAAT
* * * *
66959000 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
66959027 GATAATTCTACCTTACAAGAGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
66959054 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
66959081 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
66959108 GGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
66959135 AGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
66959162 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
66959189 GGTAGTTCTACCCTACAAAGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
66959216 AGTACTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
66959243 GGCATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
66959270 GGTAATT
1 GGTAATT
66959277 TTGTAAATCG
Statistics
Matches: 212, Mismatches: 38, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 212 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:66959093 original size:81 final size:81
Alignment explanation
Indices: 66959016--66959276 Score: 380
Period size: 81 Copynumber: 3.2 Consensus size: 81
66959006 TTTACCCCAT
* *
66959016 AAGGGTATCTCGATAATTCTACCTTACAAGAGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
1 AAGGGTATTTCGGTAATTCTACCTTACAAGAGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
66959081 GGTATTTCTACCCTAC
66 GGTATTTCTACCCTAC
* * * *
66959097 AAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCTTATAGGGGTATTTC
1 AAGGGTATTTCGGTAATTCTACCTTACAAGAGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
*
66959162 GGTAATTCTACCCTAC
66 GGTATTTCTACCCTAC
* * * * * *
66959178 AGGGGTATTTCGGTAGTTCTACCCTACAA-AGGTATTTCAGTACTTCTACCCTACAAGGGTATTT
1 AAGGGTATTTCGGTAATTCTACCTTACAAGA-GTATTTCAGTAATTCTACCCTATAGGGGTATTT
*
66959242 CGGCATTTCTACCCTAC
65 CGGTATTTCTACCCTAC
66959259 AAGGGTATTTCGGTAATT
1 AAGGGTATTTCGGTAATT
66959277 TTGTAAATCG
Statistics
Matches: 158, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
81 158 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (81 bp):
AAGGGTATTTCGGTAATTCTACCTTACAAGAGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
GGTATTTCTACCCTAC
Found at i:66959290 original size:27 final size:27
Alignment explanation
Indices: 66959260--66959655 Score: 284
Period size: 27 Copynumber: 14.7 Consensus size: 27
66959250 CTACCCTACA
* * *
66959260 AGGGTATTTCGGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCT
*** * *
66959287 AGGGTAAAATGGTAATTTTGTAAATCA
1 AGGGTATTTTGGTAATTTTATAAATCT
* * *
66959314 AGCGTACTTTGGTAATTTTATAAGTCT
1 AGGGTATTTTGGTAATTTTATAAATCT
*** * ** *
66959341 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTATAAATCT
* * *
66959368 AGGGTATTTTAGTAATTTCACAAAT-T
1 AGGGTATTTTGGTAATTTTATAAATCT
*
66959394 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTTGGTAATTTTATAAATCT
* * *
66959421 AGGGGTATTTTGATAATTTTACAAA-CC
1 A-GGGTATTTTGGTAATTTTATAAATCT
66959448 AGGGGTATTTTGGTAATTTTATAAA-CT
1 A-GGGTATTTTGGTAATTTTATAAATCT
* *
66959475 AGGGGTATTTTGGTAATTTTATAAACCA
1 A-GGGTATTTTGGTAATTTTATAAATCT
* * *
66959503 AAGGTATTTTAGTAATTTTATAAA-CC
1 AGGGTATTTTGGTAATTTTATAAATCT
* * *
66959529 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTATTTTGGTAATTTTATAAATCT
* * *
66959557 ATGGTATTTTGGTAATTTTACAAA-CC
1 AGGGTATTTTGGTAATTTTATAAATCT
* * *
66959583 AGAGGTATTTTGGTGATTTTATAAACCA
1 AG-GGTATTTTGGTAATTTTATAAATCT
* * * * *
66959611 ATGGTACTTTAGTAATTTTACAAA-CC
1 AGGGTATTTTGGTAATTTTATAAATCT
66959637 AGGGGTATTTTGGTAATTT
1 A-GGGTATTTTGGTAATTT
66959656 GGTAAACTAA
Statistics
Matches: 303, Mismatches: 58, Indels: 16
0.80 0.15 0.04
Matches are distributed among these distances:
26 7 0.02
27 290 0.96
28 6 0.02
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAATCT
Found at i:66959662 original size:27 final size:27
Alignment explanation
Indices: 66959369--66959655 Score: 358
Period size: 27 Copynumber: 10.6 Consensus size: 27
66959359 TACAGGTCGA
* * * **
66959369 GGGTATTTTAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
66959396 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
66959423 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
*
66959450 GGGTATTTTGGTAATTTTATAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
*
66959477 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
66959504 AGGTATTTTAGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
66959531 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
66959558 TGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
66959585 AGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * * *
66959612 TGGTACTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
66959639 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
66959656 GGTAAACTAA
Statistics
Matches: 226, Mismatches: 34, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 226 1.00
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAG
Found at i:66961044 original size:23 final size:23
Alignment explanation
Indices: 66961018--66961062 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
66961008 TGGCACTCTT
66961018 ATGCAAGTAACAATGGCACTTCG
1 ATGCAAGTAACAATGGCACTTCG
* * * *
66961041 ATGCTAGTGATAGTGGCACTTC
1 ATGCAAGTAACAATGGCACTTC
66961063 AGTGCAAATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (23 bp):
ATGCAAGTAACAATGGCACTTCG
Found at i:66965380 original size:151 final size:150
Alignment explanation
Indices: 66965106--66965401 Score: 574
Period size: 151 Copynumber: 2.0 Consensus size: 150
66965096 TCCATCACAC
66965106 CATGACTCAAAAGAGTCTACATATCCCAAGTAAGTGTAGCATAAAGCTAACACTCTCCAACACTC
1 CATGACTCAAAAGAGTCTACATATCCCAAGTAAGTGTAGCATAAAGCTAACACTCTCCAACACTC
66965171 TAACATGTCCCATGAAGCAATGCTTTACATTCCCTTATCCCTCCACATGTCCCAATAACAAAACA
66 TAACATGTCCCATGAAGCAATGCTTTACATTCCCTTATCCCTCCACATGTCCCAATAAC-AAACA
66965236 TATAAATAAGTACTCATATGA
130 TATAAATAAGTACTCATATGA
66965257 CATGACTCAAAAGAGTCTACATATCCCAAGTAAGTGTAGCATAAAGCTAACACTCTCCAACACTC
1 CATGACTCAAAAGAGTCTACATATCCCAAGTAAGTGTAGCATAAAGCTAACACTCTCCAACACTC
*
66965322 TAACATGTCCCATGAAGTAATGCTTTACATTCCCTTATCCCTCCACATGTCCCAATAACAAACAT
66 TAACATGTCCCATGAAGCAATGCTTTACATTCCCTTATCCCTCCACATGTCCCAATAACAAACAT
66965387 ATAAATAAGTACTCA
131 ATAAATAAGTACTCA
66965402 AATCATATGA
Statistics
Matches: 144, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
150 21 0.15
151 123 0.85
ACGTcount: A:0.38, C:0.27, G:0.10, T:0.25
Consensus pattern (150 bp):
CATGACTCAAAAGAGTCTACATATCCCAAGTAAGTGTAGCATAAAGCTAACACTCTCCAACACTC
TAACATGTCCCATGAAGCAATGCTTTACATTCCCTTATCCCTCCACATGTCCCAATAACAAACAT
ATAAATAAGTACTCATATGA
Found at i:66968596 original size:42 final size:46
Alignment explanation
Indices: 66968549--66968673 Score: 134
Period size: 48 Copynumber: 2.8 Consensus size: 46
66968539 CATGTGTTAT
*
66968549 CATATAAGACCATTTCTGGGATATGGCATT-G-AT-A-TGAGATCC
1 CATATAAGACCATATCTGGGATATGGCATTGGCATAAGTGAGATCC
* * * *
66968591 CATATAAGACCATGTCTGGAACATGGCATTGGCATCAAGTTGTGATCC
1 CATATAAGACCATATCTGGGATATGGCATTGGCAT-AAG-TGAGATCC
*
66968639 CA-AGTAAGACCATATCTGGGATATGGCGTTGGCAT
1 CATA-TAAGACCATATCTGGGATATGGCATTGGCAT
66968674 CTTACTATGT
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
42 27 0.40
43 1 0.01
44 2 0.03
46 1 0.01
47 1 0.01
48 36 0.53
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (46 bp):
CATATAAGACCATATCTGGGATATGGCATTGGCATAAGTGAGATCC
Found at i:66978593 original size:13 final size:13
Alignment explanation
Indices: 66978575--66978599 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66978565 TAAAATTGGT
66978575 TTCAAATTTGGAG
1 TTCAAATTTGGAG
66978588 TTCAAATTTGGA
1 TTCAAATTTGGA
66978600 AGATATGATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (13 bp):
TTCAAATTTGGAG
Found at i:66982214 original size:20 final size:18
Alignment explanation
Indices: 66982189--66982225 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
66982179 TGGAGGACAC
66982189 GGGCGTGTCCTGAGCCACAT
1 GGGCGTGT-CTGA-CCACAT
66982209 GGGCGTGTCTGACCACA
1 GGGCGTGTCTGACCACA
66982226 CGGCCTGCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 4 0.24
20 8 0.47
ACGTcount: A:0.16, C:0.30, G:0.35, T:0.19
Consensus pattern (18 bp):
GGGCGTGTCTGACCACAT
Found at i:66982672 original size:23 final size:23
Alignment explanation
Indices: 66982642--66982697 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
66982632 GATGAAGTGC
66982642 TGATTTGATTAAATCAGTTGATT
1 TGATTTGATTAAATCAGTTGATT
*
66982665 TGATTTGATTAAGTCAGTTGATT
1 TGATTTGATTAAATCAGTTGATT
66982688 TGATTTGATT
1 TGATTTGATT
66982698 TAGACCTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.27, C:0.04, G:0.20, T:0.50
Consensus pattern (23 bp):
TGATTTGATTAAATCAGTTGATT
Found at i:66984524 original size:65 final size:65
Alignment explanation
Indices: 66984455--66984625 Score: 243
Period size: 65 Copynumber: 2.6 Consensus size: 65
66984445 TGGTACAACT
* * * *
66984455 TGAAAAGGTTATATACACTTTGTGTGTACACTTGGAAAGGTTAGGTATACTTTGTGTGTACCATA
1 TGAAAAGGATAGATATACTTTGTGTGTACACTTGGAAAGGTTAAGTATACTTTGTGTGTACCATA
* * *
66984520 TGAAAAGGAAAGATATACTTTGTGTGTACACTTGAAAAGTTTAAGTATACTTTGTGTGTACCATA
1 TGAAAAGGATAGATATACTTTGTGTGTACACTTGGAAAGGTTAAGTATACTTTGTGTGTACCATA
* * *
66984585 TGAAAAGGATAGGTATACTCTGTGTCTACCACTTGGAAAGG
1 TGAAAAGGATAGATATACTTTGTGTGTA-CACTTGGAAAGG
66984626 AATGTACACC
Statistics
Matches: 92, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
65 82 0.89
66 10 0.11
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (65 bp):
TGAAAAGGATAGATATACTTTGTGTGTACACTTGGAAAGGTTAAGTATACTTTGTGTGTACCATA
Found at i:66984626 original size:33 final size:33
Alignment explanation
Indices: 66984447--66984626 Score: 179
Period size: 33 Copynumber: 5.5 Consensus size: 33
66984437 TATCCAAATG
* * ** *
66984447 GTACAACTTGAAAAGGTTATATACACTTTGTGT
1 GTACCACTTGAAAAGGATAGGTATACTTTGTGT
* *
66984480 GTA-CACTTGGAAAGGTTAGGTATACTTTGTGT
1 GTACCACTTGAAAAGGATAGGTATACTTTGTGT
* *
66984512 GTACCA-TATGAAAAGGAAAGATATACTTTGTGT
1 GTACCACT-TGAAAAGGATAGGTATACTTTGTGT
** *
66984545 GTA-CACTTGAAAAGTTTAAGTATACTTTGTGT
1 GTACCACTTGAAAAGGATAGGTATACTTTGTGT
*
66984577 GTACCA-TATGAAAAGGATAGGTATACTCTGTGT
1 GTACCACT-TGAAAAGGATAGGTATACTTTGTGT
* *
66984610 CTACCACTTGGAAAGGA
1 GTACCACTTGAAAAGGA
66984627 ATGTACACCT
Statistics
Matches: 121, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
32 54 0.45
33 66 0.55
34 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (33 bp):
GTACCACTTGAAAAGGATAGGTATACTTTGTGT
Found at i:66988245 original size:25 final size:23
Alignment explanation
Indices: 66988206--66988253 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 23
66988196 GTAAATCAAA
66988206 AAAATATCTCTAG-AAATTTTCT
1 AAAATATCTCTAGAAAATTTTCT
66988228 AAAATAATCTCTTCAGAAAATTTTCT
1 AAAAT-ATCTC-T-AGAAAATTTTCT
66988254 CTCTAAAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 5 0.23
23 5 0.23
24 1 0.05
25 2 0.09
26 9 0.41
ACGTcount: A:0.42, C:0.15, G:0.04, T:0.40
Consensus pattern (23 bp):
AAAATATCTCTAGAAAATTTTCT
Found at i:66988466 original size:23 final size:22
Alignment explanation
Indices: 66988440--66988494 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
66988430 TTTAATATTA
*
66988440 AATTAATAATATACTATTAAGAT
1 AATTAATAATATAATATTAA-AT
* *
66988463 AATTATTAATTTAATATTAAAT
1 AATTAATAATATAATATTAAAT
*
66988485 TATTAA-AATA
1 AATTAATAATA
66988495 ATATTATTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 3 0.12
22 6 0.23
23 17 0.65
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (22 bp):
AATTAATAATATAATATTAAAT
Found at i:66988470 original size:31 final size:30
Alignment explanation
Indices: 66988432--66988500 Score: 84
Period size: 31 Copynumber: 2.3 Consensus size: 30
66988422 ATAATCACTT
* *
66988432 TAATATTAAATTAATAATATACTATTAAGA
1 TAATATTAAATTAATAATAAACTATTAAAA
* * *
66988462 TAATTATTAATTTAATATTAAATTATTAAAA
1 TAA-TATTAAATTAATAATAAACTATTAAAA
66988493 TAATATTA
1 TAATATTA
66988501 TTTTTGGAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
30 8 0.24
31 25 0.76
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (30 bp):
TAATATTAAATTAATAATAAACTATTAAAA
Found at i:66988647 original size:18 final size:18
Alignment explanation
Indices: 66988624--66988663 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
66988614 GTCACAGGAC
66988624 TTATACAGAGGTGCATTA
1 TTATACAGAGGTGCATTA
66988642 TTATACAGAGGTGCATTA
1 TTATACAGAGGTGCATTA
66988660 TTAT
1 TTAT
66988664 GCACTAATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.38
Consensus pattern (18 bp):
TTATACAGAGGTGCATTA
Found at i:66988749 original size:25 final size:24
Alignment explanation
Indices: 66988715--66988921 Score: 206
Period size: 25 Copynumber: 8.5 Consensus size: 24
66988705 ACAAATGTGC
*
66988715 TAATCAGAGAGCACTGGCATGCTA
1 TAATCAGAGAGCACTGGCGTGCTA
66988739 GTAATCAGAGAGCACTGGCGTGCTA
1 -TAATCAGAGAGCACTGGCGTGCTA
* ****
66988764 AATATCAGAGAGCACAAATGTGC--
1 TA-ATCAGAGAGCACTGGCGTGCTA
66988787 TAATCAGAGAGCACTGGCGTGCTA
1 TAATCAGAGAGCACTGGCGTGCTA
* *
66988811 AATATCAGAGAGCATTGGCGTGCTA
1 TA-ATCAGAGAGCACTGGCGTGCTA
66988836 GTAATCAGAGAGCACTGGCGTGCTA
1 -TAATCAGAGAGCACTGGCGTGCTA
* ****
66988861 AATATCAGAGAGCACAAATGTGC--
1 TA-ATCAGAGAGCACTGGCGTGCTA
66988884 TAATCAGAGAGCACTGGCGTGCTA
1 TAATCAGAGAGCACTGGCGTGCTA
*
66988908 AATATCAGAGAGCA
1 TA-ATCAGAGAGCA
66988922 TGCTGAAGTC
Statistics
Matches: 147, Mismatches: 26, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
22 32 0.22
23 2 0.01
24 4 0.03
25 108 0.73
26 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (24 bp):
TAATCAGAGAGCACTGGCGTGCTA
Found at i:66988781 original size:72 final size:71
Alignment explanation
Indices: 66988675--66988921 Score: 265
Period size: 72 Copynumber: 3.5 Consensus size: 71
66988665 CACTAATGAA
**
66988675 CAGAGAGCACTGAAGTGCT-ATA-CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCATGCT
1 CAGAGAGCACTGGCGTGCTAATATCAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCATGCT
66988738 AGTAAT
66 AGTAAT
*
66988744 CAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGC
1 CAGAGAGCACTGGCGTGCT-AATATCAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCATGC
*
66988809 TA-AATAT
65 TAGTA-AT
* * **** **
66988816 CAGAGAGCATTGGCGTGCTAGTAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCAC--AAA
1 CAGAGAGCACTGGCGTGCTAAT-ATCAGAGAGCACAAATGTGCT--A-ATCAGAGAGCACTGGCA
66988879 TG-T-GCTAAT
62 TGCTAG-TAAT
66988888 CAGAGAGCACTGGCGTGCTAAATATCAGAGAGCA
1 CAGAGAGCACTGGCGTGCT-AATATCAGAGAGCA
66988922 TGCTGAAGTC
Statistics
Matches: 151, Mismatches: 16, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
69 17 0.11
71 6 0.04
72 110 0.73
73 5 0.03
74 1 0.01
75 12 0.08
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.19
Consensus pattern (71 bp):
CAGAGAGCACTGGCGTGCTAATATCAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCATGCT
AGTAAT
Found at i:66988852 original size:97 final size:97
Alignment explanation
Indices: 66988717--66988922 Score: 394
Period size: 97 Copynumber: 2.1 Consensus size: 97
66988707 AAATGTGCTA
*
66988717 ATCAGAGAGCACTGGCATGCTAGTAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAA
1 ATCAGAGAGCATTGGCATGCTAGTAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAA
66988782 TGTGCTAATCAGAGAGCACTGGCGTGCTAAAT
66 TGTGCTAATCAGAGAGCACTGGCGTGCTAAAT
*
66988814 ATCAGAGAGCATTGGCGTGCTAGTAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAA
1 ATCAGAGAGCATTGGCATGCTAGTAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAA
66988879 TGTGCTAATCAGAGAGCACTGGCGTGCTAAAT
66 TGTGCTAATCAGAGAGCACTGGCGTGCTAAAT
66988911 ATCAGAGAGCAT
1 ATCAGAGAGCAT
66988923 GCTGAAGTCC
Statistics
Matches: 107, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
97 107 1.00
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (97 bp):
ATCAGAGAGCATTGGCATGCTAGTAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAA
TGTGCTAATCAGAGAGCACTGGCGTGCTAAAT
Found at i:66988909 original size:47 final size:47
Alignment explanation
Indices: 66988740--66988921 Score: 292
Period size: 47 Copynumber: 3.8 Consensus size: 47
66988730 GGCATGCTAG
66988740 TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGC
1 TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGC
*****
66988787 TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCATTGGCGTGC
1 TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGC
66988834 TAGTAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGC
1 ---TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGC
66988884 TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCA
1 TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCA
66988922 TGCTGAAGTC
Statistics
Matches: 122, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
47 80 0.66
50 42 0.34
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.20
Consensus pattern (47 bp):
TAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCACAAATGTGC
Found at i:66994300 original size:27 final size:25
Alignment explanation
Indices: 66994145--66994374 Score: 260
Period size: 25 Copynumber: 9.4 Consensus size: 25
66994135 AAATGTGCAA
*
66994145 ATCAGAGAGCACTGACGTGCTAAAT
1 ATCAGAGAGCACTGGCGTGCTAAAT
* *
66994170 ATCATAGAGCACTGGCGTGCT-AGT
1 ATCAGAGAGCACTGGCGTGCTAAAT
66994194 AATCAGAGAGCACTGGCGTGCTAAAT
1 -ATCAGAGAGCACTGGCGTGCTAAAT
****
66994220 ATCAGAGAGCACAAATGTGCT--A-
1 ATCAGAGAGCACTGGCGTGCTAAAT
66994242 ATCAGAGAGCACTGGCGTGCTAAAT
1 ATCAGAGAGCACTGGCGTGCTAAAT
* *
66994267 ATCAGAGAGCATTGGCGTGCT-AGT
1 ATCAGAGAGCACTGGCGTGCTAAAT
*
66994291 AATCAGAGAGCACTAGCGTGCTAAAT
1 -ATCAGAGAGCACTGGCGTGCTAAAT
****
66994317 ATCAGAGAGCACAAATGTGCT--A-
1 ATCAGAGAGCACTGGCGTGCTAAAT
66994339 ATCAGAGAGCACTGGCGTGCTAAAT
1 ATCAGAGAGCACTGGCGTGCTAAAT
66994364 ATCAGAGAGCA
1 ATCAGAGAGCA
66994375 TGCTGAAGTC
Statistics
Matches: 170, Mismatches: 25, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
22 34 0.20
23 2 0.01
24 6 0.04
25 124 0.73
26 4 0.02
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (25 bp):
ATCAGAGAGCACTGGCGTGCTAAAT
Found at i:66994343 original size:72 final size:72
Alignment explanation
Indices: 66994145--66994374 Score: 263
Period size: 72 Copynumber: 3.2 Consensus size: 72
66994135 AAATGTGCAA
*
66994145 ATCAGAGAGCACT-GACGTGCTAAATATCATAGAGCACTGGCGTGCTAGTAATCAGAGAGCACTG
1 ATCAGAGAGCACTAG-CGTGCTAAATATCAGAGAGCACTGGCGTGC---TAATCAGAGAGCACTG
66994209 GCGTGCTAAAT
62 GCGTGCTAAAT
* ** *
66994220 ATCAGAGAGCACAAATGTGCT--A-ATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCATTGG
1 ATCAGAGAGCACTAGCGTGCTAAATATCAGAGAGCACTGGCGTGCT--A-ATCAGAGAGCACTGG
*
66994282 CGTGCT-AGT
63 CGTGCTAAAT
****
66994291 AATCAGAGAGCACTAGCGTGCTAAATATCAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCG
1 -ATCAGAGAGCACTAGCGTGCTAAATATCAGAGAGCACTGGCGTGCTAATCAGAGAGCACTGGCG
66994356 TGCTAAAT
65 TGCTAAAT
66994364 ATCAGAGAGCA
1 ATCAGAGAGCA
66994375 TGCTGAAGTC
Statistics
Matches: 131, Mismatches: 15, Indels: 21
0.78 0.09 0.13
Matches are distributed among these distances:
69 1 0.01
71 3 0.02
72 88 0.67
73 4 0.03
74 1 0.01
75 34 0.26
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (72 bp):
ATCAGAGAGCACTAGCGTGCTAAATATCAGAGAGCACTGGCGTGCTAATCAGAGAGCACTGGCGT
GCTAAAT
Found at i:66994375 original size:97 final size:97
Alignment explanation
Indices: 66994125--66994375 Score: 457
Period size: 97 Copynumber: 2.6 Consensus size: 97
66994115 AAGTGCTTTA
* * * *
66994125 CAGAGAGCACAAATGTGCAAATCAGAGAGCACTGACGTGCTAAATATCATAGAGCACTGGCGTGC
1 CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCATTGGCGTGC
*
66994190 TAGTAATCAGAGAGCACTGGCGTGCTAAATAT
66 TAGTAATCAGAGAGCACTAGCGTGCTAAATAT
66994222 CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCATTGGCGTGC
1 CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCATTGGCGTGC
66994287 TAGTAATCAGAGAGCACTAGCGTGCTAAATAT
66 TAGTAATCAGAGAGCACTAGCGTGCTAAATAT
66994319 CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCAT
1 CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCAT
66994376 GCTGAAGTCC
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
97 149 1.00
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.20
Consensus pattern (97 bp):
CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGGCGTGCTAAATATCAGAGAGCATTGGCGTGC
TAGTAATCAGAGAGCACTAGCGTGCTAAATAT
Found at i:66997182 original size:39 final size:39
Alignment explanation
Indices: 66997134--66997216 Score: 130
Period size: 39 Copynumber: 2.1 Consensus size: 39
66997124 GCTCTGATGA
* *
66997134 GCTTTAGTTAGCCTTCGGGCTTCCGTCCAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTCCAGCACTTATGT
* *
66997173 GCTTCAGTTAGCCTTCGGGCTTCTGTCTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTCCAGCACTTATGT
66997212 GCTTC
1 GCTTC
66997217 CGCTAGACTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.11, C:0.28, G:0.24, T:0.37
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTCCAGCACTTATGT
Found at i:66997215 original size:21 final size:20
Alignment explanation
Indices: 66997152--66997216 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 20
66997142 TAGCCTTCGG
* *
66997152 GCTTCCGTCCAGCACTTGTGT
1 GCTTCAGTCTAGCACTT-TGT
* *
66997173 GCTTCAGT-TAGC-CTTCGG
1 GCTTCAGTCTAGCACTTTGT
*
66997191 GCTTCTGTCTAGCACTTATGT
1 GCTTCAGTCTAGCACTT-TGT
66997212 GCTTC
1 GCTTC
66997217 CGCTAGACTT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 8 0.24
19 7 0.21
20 6 0.18
21 13 0.38
ACGTcount: A:0.11, C:0.29, G:0.23, T:0.37
Consensus pattern (20 bp):
GCTTCAGTCTAGCACTTTGT
Found at i:66997233 original size:39 final size:39
Alignment explanation
Indices: 66997146--66997233 Score: 113
Period size: 39 Copynumber: 2.3 Consensus size: 39
66997136 TTTAGTTAGC
* * *
66997146 CTTCGGGCTTCCGTCCAGCACTTGTGTGCTTCAGTTAGC
1 CTTCGGGCTTCCGTCCAGCACTTATGTGCTTCAGCTAGA
* * *
66997185 CTTCGGGCTTCTGTCTAGCACTTATGTGCTTCCGCTAGA
1 CTTCGGGCTTCCGTCCAGCACTTATGTGCTTCAGCTAGA
*
66997224 CTTCTGGCTT
1 CTTCGGGCTT
66997234 TAGATCACGA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.10, C:0.30, G:0.24, T:0.36
Consensus pattern (39 bp):
CTTCGGGCTTCCGTCCAGCACTTATGTGCTTCAGCTAGA
Found at i:67003895 original size:224 final size:224
Alignment explanation
Indices: 67003168--67004063 Score: 1655
Period size: 222 Copynumber: 4.0 Consensus size: 224
67003158 TAAGGAACAG
67003168 TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
1 TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
*
67003233 GCATGTTATTTACCATACATGTGTGGGTGGGT--TTTGGGGGGGGGTGTTTGGAGAGCAATAGAT
66 GCATGTTATTTACCATACATGTGTGGGTGGGTGGTTTGGGGGGGGGTGTTTGGAGAGCAACAGAT
*
67003296 TAAGGATGGACAGCTACATGTCAATAGTTCTTTTTTTTTTTTTTTTGTACATTCTCATCTATGAT
131 TAAGCATGGACAGCTACATGTCAATAGTTC-TTTTTTTTTTTTTTTGTACATTCTCATCTATGAT
67003361 TGATTATATTGCAATTGGTAGAGTTTTATC
195 TGATTATATTGCAATTGGTAGAGTTTTATC
67003391 TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
1 TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
* *
67003456 GCATGTTATTTACCATAAATGTGTGGGT--G-GGTTTGGGGGGGGGTGTTTGGAGAGCAATAGAT
66 GCATGTTATTTACCATACATGTGTGGGTGGGTGGTTTGGGGGGGGGTGTTTGGAGAGCAACAGAT
67003518 TAAGCATGGACAGCTACATGTCAATAGTTCTTTTTTTTTTTTTTTTGTACATTCTCATCTATGAT
131 TAAGCATGGACAGCTACATGTCAATAGTTC-TTTTTTTTTTTTTTTGTACATTCTCATCTATGAT
*
67003583 TGATTATATTGCAATTAGTAGAGTTTTATC
195 TGATTATATTGCAATTGGTAGAGTTTTATC
67003613 TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
1 TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
*
67003678 GCATGTTATTTACCATACATGTGTGGGTGGGTGGGTTTTGGGGGGGGTGTTTGGAGAGCAACAGA
66 GCATGTTATTTACCATACATGTGTGGGTGGGT-GGTTTGGGGGGGGGTGTTTGGAGAGCAACAGA
67003743 TTAAGCATGGACAGCTACATGTCAATAGTTC-TTTTTTTTTTTTTTGTACATTCTCATCTATGAT
130 TTAAGCATGGACAGCTACATGTCAATAGTTCTTTTTTTTTTTTTTTGTACATTCTCATCTATGAT
67003807 TGATTATATTGCAATTGGTAGAGTTTTATC
195 TGATTATATTGCAATTGGTAGAGTTTTATC
67003837 TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
1 TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
67003902 GCATGTTATTTACCATACATGTGTGGGTGGGTGG-TT-GGGGGGGGTGTTTGGAGAGCAACAGAT
66 GCATGTTATTTACCATACATGTGTGGGTGGGTGGTTTGGGGGGGGGTGTTTGGAGAGCAACAGAT
67003965 TAAGCATGGACAGCTACATGTCAATAGTTCTTTTTTTTTTTTTTTGTACATTCTCATCTATGATT
131 TAAGCATGGACAGCTACATGTCAATAGTTCTTTTTTTTTTTTTTTGTACATTCTCATCTATGATT
67004030 GATTATATTGCAATTGGTAGAGTTTTATC
196 GATTATATTGCAATTGGTAGAGTTTTATC
67004059 TTTAT
1 TTTAT
67004064 CCCTTTGCTT
Statistics
Matches: 659, Mismatches: 7, Indels: 15
0.97 0.01 0.02
Matches are distributed among these distances:
221 58 0.09
222 286 0.43
223 94 0.14
224 160 0.24
226 61 0.09
ACGTcount: A:0.24, C:0.09, G:0.21, T:0.46
Consensus pattern (224 bp):
TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
GCATGTTATTTACCATACATGTGTGGGTGGGTGGTTTGGGGGGGGGTGTTTGGAGAGCAACAGAT
TAAGCATGGACAGCTACATGTCAATAGTTCTTTTTTTTTTTTTTTGTACATTCTCATCTATGATT
GATTATATTGCAATTGGTAGAGTTTTATC
Found at i:67004001 original size:446 final size:444
Alignment explanation
Indices: 67003168--67004063 Score: 1663
Period size: 446 Copynumber: 2.0 Consensus size: 444
67003158 TAAGGAACAG
67003168 TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
1 TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
*
67003233 GCATGTTATTTACCATACATGTGTGGGTGGGTTTTGGGGGGGGGTGTTTGGAGAGCAATAGATTA
66 GCATGTTATTTACCATACATGTGTGGGTGGGTTTTGGGGGGGGGTGTTTGGAGAGCAACAGATTA
*
67003298 AGGATGGACAGCTACATGTCAATAGTTCTTTTTTTTTTTTTTTTGTACATTCTCATCTATGATTG
131 AGCATGGACAGCTACATGTCAATAGTTC-TTTTTTTTTTTTTTTGTACATTCTCATCTATGATTG
67003363 ATTATATTGCAATTGGTAGAGTTTTATCTTTATGGTTAGATTTTAAATTATCTTTATTTGTTTAC
195 ATTATATTGCAATTGGTAGAGTTTTATCTTTATGGTTAGATTTTAAATTATCTTTATTTGTTTAC
67003428 TTGTAACTTTATGATTGTAATTTGAACTGCATGTTATTTACCATAAATGTGTGGGTGGGTTTGGG
260 TTGTAACTTTATGATTGTAATTTGAACTGCATGTTATTTACCATAAATGTGTGGGTGGGTTTGGG
*
67003493 GGGGGGTGTTTGGAGAGCAATAGATTAAGCATGGACAGCTACATGTCAATAGTTCTTTTTTTTTT
325 GGGGGGTGTTTGGAGAGCAACAGATTAAGCATGGACAGCTACATGTCAATAGTTCTTTTTTTTTT
67003558 TTTTTTGTACATTCTCATCTATGATTGATTATATTGCAATTAGTAGAGTTTTATC
390 TTTTTTGTACATTCTCATCTATGATTGATTATATTGCAATTAGTAGAGTTTTATC
67003613 TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
1 TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
*
67003678 GCATGTTATTTACCATACATGTGTGGGTGGGTGGGTTTTGGGGGGGGTGTTTGGAGAGCAACAGA
66 GCATGTTATTTACCATACATGTGTGGGTGGGT---TTTGGGGGGGGGTGTTTGGAGAGCAACAGA
67003743 TTAAGCATGGACAGCTACATGTCAATAGTTC-TTTTTTTTTTTTTTGTACATTCTCATCTATGAT
128 TTAAGCATGGACAGCTACATGTCAATAGTTCTTTTTTTTTTTTTTTGTACATTCTCATCTATGAT
67003807 TGATTATATTGCAATTGGTAGAGTTTTATCTTTATGGTTAGATTTTAAATTATCTTTATTTGTTT
193 TGATTATATTGCAATTGGTAGAGTTTTATCTTTATGGTTAGATTTTAAATTATCTTTATTTGTTT
*
67003872 ACTTGTAACTTTATGATTGTAATTTGAACTGCATGTTATTTACCATACATGTGTGGGTGGGTGGT
258 ACTTGTAACTTTATGATTGTAATTTGAACTGCATGTTATTTACCATAAATGTGTGGGTGGGT--T
67003937 T-GGGGGGGGTGTTTGGAGAGCAACAGATTAAGCATGGACAGCTACATGTCAATAGTTC-TTTTT
321 TGGGGGGGGGTGTTTGGAGAGCAACAGATTAAGCATGGACAGCTACATGTCAATAGTTCTTTTTT
*
67004000 TTTTTTTTTTGTACATTCTCATCTATGATTGATTATATTGCAATTGGTAGAGTTTTATC
386 TTTTTTTTTTGTACATTCTCATCTATGATTGATTATATTGCAATTAGTAGAGTTTTATC
67004059 TTTAT
1 TTTAT
67004064 CCCTTTGCTT
Statistics
Matches: 440, Mismatches: 6, Indels: 9
0.97 0.01 0.02
Matches are distributed among these distances:
445 97 0.22
446 227 0.52
447 56 0.13
448 60 0.14
ACGTcount: A:0.24, C:0.09, G:0.21, T:0.46
Consensus pattern (444 bp):
TTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACTTGTAACTTTATGATTGTAATTTGAACT
GCATGTTATTTACCATACATGTGTGGGTGGGTTTTGGGGGGGGGTGTTTGGAGAGCAACAGATTA
AGCATGGACAGCTACATGTCAATAGTTCTTTTTTTTTTTTTTTGTACATTCTCATCTATGATTGA
TTATATTGCAATTGGTAGAGTTTTATCTTTATGGTTAGATTTTAAATTATCTTTATTTGTTTACT
TGTAACTTTATGATTGTAATTTGAACTGCATGTTATTTACCATAAATGTGTGGGTGGGTTTGGGG
GGGGGTGTTTGGAGAGCAACAGATTAAGCATGGACAGCTACATGTCAATAGTTCTTTTTTTTTTT
TTTTTGTACATTCTCATCTATGATTGATTATATTGCAATTAGTAGAGTTTTATC
Found at i:67004341 original size:149 final size:149
Alignment explanation
Indices: 67004066--67004364 Score: 580
Period size: 149 Copynumber: 2.0 Consensus size: 149
67004056 ATCTTTATCC
* *
67004066 CTTTGCTTCCACTCGCAGCAATATTTATGTTGGGTCTACTTCATATTAAAATTTTTTCTAGGTTG
1 CTTTACTTCCACTCGCAACAATATTTATGTTGGGTCTACTTCATATTAAAATTTTTTCTAGGTTG
67004131 CTTAGTAAAATTGATAATTTTGTTAACCCAATGATCTACTGATAAGAACGCTGTCTGTAAAAGAC
66 CTTAGTAAAATTGATAATTTTGTTAACCCAATGATCTACTGATAAGAACGCTGTCTGTAAAAGAC
67004196 ACTTTCATCCAATGAAGAG
131 ACTTTCATCCAATGAAGAG
67004215 CTTTACTTCCACTCGCAACAATATTTATGTTGGGTCTACTTCATATTAAAATTTTTTCTAGGTTG
1 CTTTACTTCCACTCGCAACAATATTTATGTTGGGTCTACTTCATATTAAAATTTTTTCTAGGTTG
67004280 CTTAGTAAAATTGATAATTTTGTTAACCCAATGATCTACTGATAAGAACGCTGTCTGTAAAAGAC
66 CTTAGTAAAATTGATAATTTTGTTAACCCAATGATCTACTGATAAGAACGCTGTCTGTAAAAGAC
67004345 ACTTTCATCCAATGAAGAG
131 ACTTTCATCCAATGAAGAG
67004364 C
1 C
67004365 CATGACCTTT
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 148 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (149 bp):
CTTTACTTCCACTCGCAACAATATTTATGTTGGGTCTACTTCATATTAAAATTTTTTCTAGGTTG
CTTAGTAAAATTGATAATTTTGTTAACCCAATGATCTACTGATAAGAACGCTGTCTGTAAAAGAC
ACTTTCATCCAATGAAGAG
Found at i:67007019 original size:69 final size:69
Alignment explanation
Indices: 67006908--67007046 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
67006898 GATAGGAAAA
*
67006908 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTTGTGGTAGG
1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
67006973 GCTG
66 GCTG
67006977 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
67007042 GCTG
66 GCTG
67007046 A
1 A
67007047 TAGAGTCTTG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.27, C:0.13, G:0.32, T:0.28
Consensus pattern (69 bp):
ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
GCTG
Found at i:67017740 original size:3 final size:3
Alignment explanation
Indices: 67017732--67017763 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
67017722 CTCTCGTGTT
67017732 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
67017764 TAATTTAAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:67018767 original size:7 final size:7
Alignment explanation
Indices: 67018755--67018780 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
67018745 ATAACTCAAA
67018755 AAAATTT
1 AAAATTT
67018762 AAAATTT
1 AAAATTT
67018769 AAAATTT
1 AAAATTT
67018776 AAAAT
1 AAAAT
67018781 ATATAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (7 bp):
AAAATTT
Found at i:67020009 original size:23 final size:23
Alignment explanation
Indices: 67019982--67020037 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
67019972 AAAAAAGAGG
* * * *
67019982 GAAAGAAATGAGAGGAAGGAGAA
1 GAAAGAAAGGAAAAGAAGAAGAA
67020005 GAAAGAAAGGAAAAGAAGAAGAA
1 GAAAGAAAGGAAAAGAAGAAGAA
*
67020028 GAAAGGAAGG
1 GAAAGAAAGG
67020038 TACGTATTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.61, C:0.00, G:0.38, T:0.02
Consensus pattern (23 bp):
GAAAGAAAGGAAAAGAAGAAGAA
Found at i:67024461 original size:112 final size:112
Alignment explanation
Indices: 67024307--67024819 Score: 495
Period size: 112 Copynumber: 4.7 Consensus size: 112
67024297 ATAAAAGTGA
* * * *
67024307 TTTTTTTT--AATTATTTTAAAGTTTTTTTGTTAGTGATATATGATTAGGTTATAAATTGTGTGT
1 TTTTTTTTAAAATTATCTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTGTGT
* * *
67024370 GTTGAATTTAGTG-TT-TTGTGAATTT-TTATTAATGTAAATTTTTTGT
66 GTTTAGTTTAGTGTTTATTGTG-ATTTCTTATGAATGTAAATTTTTT-T
* * * * * *
67024416 TTTTTTTTAAAAATTATTTTATACTTATTTTGTTAGTAATTTATGATTATGTTATAAATTGTTTC
1 TTTTTTTT-AAAATTATCTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTGTG
67024481 TGTTTAGTTTAGTG-TT-TTGTGATTTCTTATGAATGTAAATTTTTTTT
65 TGTTTAGTTTAGTGTTTATTGTGATTTCTTATGAATGTAAA-TTTTTTT
* *
67024528 TTGTATTTTTAAAATTATCTTAAAGTCATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTT
1 TT-T-TTTTTAAAATTATCTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTG--T
* *
67024593 GTGTGTGCTTTGTTTAATGTTTATTGTGACTTT-TTATGAATGTAAA-------
62 GTGTGT--TTAGTTTAGTGTTTATTGTGA-TTTCTTATGAATGTAAATTTTTTT
* * * *
67024639 TTTTTTTT--AATTATCTGAAAGTTATTTTATTAGCAATTTATGATTAGGTTATAAATTGTTTGT
1 TTTTTTTTAAAATTATCTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTGTGT
*
67024702 GTTTAGTTTAGTGTTTATTGTGATTTGTTATGAATGTAAA-------
66 GTTTAGTTTAGTGTTTATTGTGATTTCTTATGAATGTAAATTTTTTT
* * * * *
67024742 --TTTTTT-AAATTATTTTAAAGTTATTTTATTAGTAATTTATGATTAGCTTATAAATTATTTGT
1 TTTTTTTTAAAATTATCTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTGTGT
67024804 GTTTAGTTTAGTGTTT
66 GTTTAGTTTAGTGTTT
67024820 TAAAATTATT
Statistics
Matches: 354, Mismatches: 34, Indels: 39
0.83 0.08 0.09
Matches are distributed among these distances:
101 6 0.02
102 69 0.19
103 32 0.09
105 6 0.02
107 45 0.13
109 13 0.04
110 1 0.00
111 6 0.02
112 80 0.23
113 53 0.15
114 5 0.01
115 5 0.01
117 9 0.03
118 2 0.01
119 19 0.05
120 3 0.01
ACGTcount: A:0.27, C:0.02, G:0.14, T:0.57
Consensus pattern (112 bp):
TTTTTTTTAAAATTATCTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTGTGT
GTTTAGTTTAGTGTTTATTGTGATTTCTTATGAATGTAAATTTTTTT
Found at i:67024779 original size:102 final size:102
Alignment explanation
Indices: 67024532--67024819 Score: 407
Period size: 102 Copynumber: 2.8 Consensus size: 102
67024522 TTTTTTTTGT
* * *
67024532 ATTTTTAAAATTATCTTAAAGTCATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGTGT
1 ATTTTTTAAATTATCTTAAAGTTATTTTATTAGTAATTTATGATTAGATTATAAATTG-TT-TGT
* *
67024597 GTGCTTTGTTTAATGTTTATTGTGACTTTTTATGAATGTAA
64 GT--TTAGTTTAGTGTTTATTGTGACTTTTTATGAATGTAA
* * * *
67024638 ATTTTTTTTAATTATCTGAAAGTTATTTTATTAGCAATTTATGATTAGGTTATAAATTGTTTGTG
1 A-TTTTTTAAATTATCTTAAAGTTATTTTATTAGTAATTTATGATTAGATTATAAATTGTTTGTG
67024703 TTTAGTTTAGTGTTTATTGTGA-TTTGTTATGAATGTAA
65 TTTAGTTTAGTGTTTATTGTGACTTT-TTATGAATGTAA
* * *
67024741 ATTTTTTAAATTATTTTAAAGTTATTTTATTAGTAATTTATGATTAGCTTATAAATTATTTGTGT
1 ATTTTTTAAATTATCTTAAAGTTATTTTATTAGTAATTTATGATTAGATTATAAATTGTTTGTGT
67024806 TTAGTTTAGTGTTT
66 TTAGTTTAGTGTTT
67024820 TAAAATTATT
Statistics
Matches: 165, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
102 75 0.45
103 32 0.19
105 5 0.03
106 3 0.02
107 50 0.30
ACGTcount: A:0.28, C:0.02, G:0.15, T:0.55
Consensus pattern (102 bp):
ATTTTTTAAATTATCTTAAAGTTATTTTATTAGTAATTTATGATTAGATTATAAATTGTTTGTGT
TTAGTTTAGTGTTTATTGTGACTTTTTATGAATGTAA
Found at i:67025170 original size:11 final size:12
Alignment explanation
Indices: 67025143--67025172 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
67025133 TTATGAGATA
*
67025143 TTTTTTATTGTG
1 TTTTTTACTGTG
67025155 TTTTTTACTGTG
1 TTTTTTACTGTG
67025167 TTTTTT
1 TTTTTT
67025173 GTTACTTACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.03, G:0.13, T:0.77
Consensus pattern (12 bp):
TTTTTTACTGTG
Found at i:67025181 original size:19 final size:19
Alignment explanation
Indices: 67025159--67025209 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
67025149 ATTGTGTTTT
*
67025159 TTACTGTGTTTTTTGTTAC
1 TTACTGTGTTTTTTATTAC
* * **
67025178 TTAC-GTATTTATTATTTT
1 TTACTGTGTTTTTTATTAC
67025196 TTACTGTGTTTTTT
1 TTACTGTGTTTTTT
67025210 TGTTTCTCAA
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.14, C:0.08, G:0.12, T:0.67
Consensus pattern (19 bp):
TTACTGTGTTTTTTATTAC
Found at i:67036027 original size:128 final size:126
Alignment explanation
Indices: 67035746--67036176 Score: 520
Period size: 126 Copynumber: 3.5 Consensus size: 126
67035736 GCCAAACGGT
* * * * * * *
67035746 AAATCGCAACCCAGCACGATTGGGCACGATTTATCGAATTTTCAAATACGAAATATTGCCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCATT
* * ** * *
67035811 TTAATTTAAGAAAATATGGATGAAATGTCGAAAGGATATTTCGTATCTTAGTCGAATGAAA
66 TTAATTTAAGAAAACATGGATGAAATTTTAAAAGGATATTCCGTATTTTAGTCGAATGAAA
*
67035872 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCGTT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCATT
* * *
67035937 TTAGTTTAAGAAAACGTGGATGAAATTTTAAAAAAGGATATTCCATATTTTAGTCGAATGAAAA
66 TTAATTTAAGAAAACATGGATGAAATTTT--AAAAGGATATTCCGTATTTTAGTCGAATG-AAA
*
67036001 AAAT-GAAACCCAGCACGATTGGGCACGATCTCTCAAAC-T-C---C-CGAAATGTTGCCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCATT
* * *
67036059 TTAATTTTAAAAAAACATGGACGAAATTTTTAAAGGATATTCCGTATTTTAG-CTGAATG-AA
66 TTAA-TTTAAGAAAACATGGATGAAATTTTAAAAGGATATTCCGTATTTTAGTC-GAATGAAA
* * * * *
67036120 AAATCGAAACCCAGCACAATTGGGCACGACCCCTCGAACTCCCAAACACGAAATATT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATT
67036177 TCCTAATATT
Statistics
Matches: 262, Mismatches: 31, Indels: 24
0.83 0.10 0.08
Matches are distributed among these distances:
119 6 0.02
120 31 0.12
121 25 0.10
122 19 0.07
123 23 0.09
125 1 0.00
126 90 0.34
127 1 0.00
128 59 0.23
129 7 0.03
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (126 bp):
AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCATT
TTAATTTAAGAAAACATGGATGAAATTTTAAAAGGATATTCCGTATTTTAGTCGAATGAAA
Found at i:67036868 original size:16 final size:16
Alignment explanation
Indices: 67036821--67036868 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
67036811 TGTATATAAG
*
67036821 AAAATTTAAAATAAAC
1 AAAATTTAAAAAAAAC
*
67036837 -AAATTACAAAATAAAAC
1 AAAATT-TAAAA-AAAAC
67036854 AAAATTTAAAAAAAA
1 AAAATTTAAAAAAAA
67036869 TACAAGTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
15 5 0.19
16 8 0.31
17 8 0.31
18 5 0.19
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAATTTAAAAAAAAC
Found at i:67036906 original size:19 final size:18
Alignment explanation
Indices: 67036881--67036924 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
67036871 CAAGTAAAAT
*
67036881 ATTAAAATAGA-TAAATAA
1 ATTAAAA-AGAGTAAAGAA
*
67036899 ATTAAAAAGAGTAAAGGA
1 ATTAAAAAGAGTAAAGAA
67036917 ATTAAAAA
1 ATTAAAAA
67036925 AAACTAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.23
Consensus pattern (18 bp):
ATTAAAAAGAGTAAAGAA
Found at i:67038301 original size:84 final size:83
Alignment explanation
Indices: 67038194--67038502 Score: 377
Period size: 84 Copynumber: 3.7 Consensus size: 83
67038184 TTTTGGGATA
* * * * * * * *
67038194 AGATCTGTATTTTTCAGCTTGTTACACTACTGCTTAGGGGATTACGGTTTGCTGTCTTTGATTTG
1 AGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTACTGTCTTTGATCTG
* *
67038259 CTCCCCTACTATTTAGGGG
66 CTCCACTACTGTTTA-GGG
* *
67038278 AGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTCCTGTCTTCGATCTG
1 AGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTACTGTCTTTGATCTG
67038343 CTCCACTACTGTTTATGGG
66 CTCCACTACTGTTTA-GGG
* * *
67038362 AGATCTGTATTTTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTAT-TTTCGATCT
1 AGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTACTGTCTTT-GATCT
*
67038426 GCTCCACTATTGTTTAGGG
65 GCTCCACTACTGTTTAGGG
* * * * * * *
67038445 AGATCTGTATTTTCTAGCCTGTCACCTTATTGCTTTGGGGGTTAAAGCTTGCTGTCTT
1 AGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTACTGTCTT
67038503 GACCGATGCC
Statistics
Matches: 197, Mismatches: 26, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
83 52 0.26
84 145 0.74
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.40
Consensus pattern (83 bp):
AGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTACTGTCTTTGATCTG
CTCCACTACTGTTTAGGG
Found at i:67038502 original size:167 final size:168
Alignment explanation
Indices: 67038194--67038502 Score: 408
Period size: 167 Copynumber: 1.8 Consensus size: 168
67038184 TTTTGGGATA
* * * ** * *
67038194 AGATCTGTATTTTTCAGCTTGTTACACTACTGCTTAGGGGATTACGGTTTGCTGTCTTTGATTTG
1 AGATCTGTATTTTTCAGCCTGTTACACTACTGCTTAGGGGATTAAGGCTCACTATCTTTGATCTG
* * *
67038259 CTCCCCTACTATTTAGGGGAGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAG
66 CTCCACTACTATTTAGGGGAGATCTGTATTTTCCAGCCTGTCACCCTACTGCTTAGGGGGTTAAA
67038324 GCTTCCTGTCTTCGATCTGCTCCACTACTGTTTATGGG
131 GCTTCCTGTCTTCGATCTGCTCCACTACTGTTTATGGG
* *
67038362 AGATCTGTA-TTTTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTAT-TTTCGATC
1 AGATCTGTATTTTTC-AGCCTGTTACACTACTGCTTAGGGGATTAAGGCTCACTATCTTT-GATC
* * * * * *
67038425 TGCTCCACTATTGTTTA-GGGAGATCTGTATTTTCTAGCCTGTCACCTTATTGCTTTGGGGGTTA
64 TGCTCCACTACTATTTAGGGGAGATCTGTATTTTCCAGCCTGTCACCCTACTGCTTAGGGGGTTA
*
67038489 AAGCTTGCTGTCTT
129 AAGCTTCCTGTCTT
67038503 GACCGATGCC
Statistics
Matches: 120, Mismatches: 19, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
167 62 0.52
168 58 0.48
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.40
Consensus pattern (168 bp):
AGATCTGTATTTTTCAGCCTGTTACACTACTGCTTAGGGGATTAAGGCTCACTATCTTTGATCTG
CTCCACTACTATTTAGGGGAGATCTGTATTTTCCAGCCTGTCACCCTACTGCTTAGGGGGTTAAA
GCTTCCTGTCTTCGATCTGCTCCACTACTGTTTATGGG
Found at i:67050092 original size:128 final size:126
Alignment explanation
Indices: 67049811--67050220 Score: 518
Period size: 128 Copynumber: 3.2 Consensus size: 126
67049801 GCCAAACGGT
* * * ** * *
67049811 AAATCGCAACCCAGCACGATTGGGCACGATTTATTGAATTTCCAAATACAAAATATTGTCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAATACGAAATATTGTCTCATT
* * * *
67049876 TTAATTTAAGAAAACATGGATGAAATGTCGAAAGGATATTTCGTATCTTAGTCGAATGAAA
66 TTAATTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCCGTATTTTAGTCGAATGAAA
* * *
67049937 AAATCGAAACCCATCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGTCTCGTT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAATACGAAATATTGTCTCATT
** * *
67050002 TTAGCTTAAGAAAACGTGGATGAAATTTCAAAAAAGGATATTCCATATTTTAGTCGAATGAAA
66 TTAATTTAAGAAAACATGGATGAAATTTC--AAAAGGATATTCCGTATTTTAGTCGAATGAAA
* * * *
67050065 AAAACGAAACCCAGCATGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCTCAT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACT-TCCAAATACGAAATATTGTCTCAT
* * * *
67050130 TTTAATTTTAAAAAAACATGGACGAAATTTCTAAAGGATATTCCGTATTTTAG-CTGAACG-AA
65 TTTAA-TTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCCGTATTTTAGTC-GAATGAAA
*
67050192 AAATCGAAACCCAGCACAATTGGGCACGA
1 AAATCGAAACCCAGCACGATTGGGCACGA
67050221 CCCCCCGAAC
Statistics
Matches: 243, Mismatches: 36, Indels: 9
0.84 0.12 0.03
Matches are distributed among these distances:
126 80 0.33
127 29 0.12
128 89 0.37
129 24 0.10
130 21 0.09
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.27
Consensus pattern (126 bp):
AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAATACGAAATATTGTCTCATT
TTAATTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCCGTATTTTAGTCGAATGAAA
Found at i:67050981 original size:19 final size:18
Alignment explanation
Indices: 67050954--67051001 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
67050944 AATACACGTA
* *
67050954 AAATATTAAAATAGATAAAT
1 AAAT-TTAAAAGAG-TAAAG
67050974 AAATTTAAAAGAGTAAAG
1 AAATTTAAAAGAGTAAAG
*
67050992 GAATTTAAAA
1 AAATTTAAAA
67051002 AAAACTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 13 0.52
19 8 0.32
20 4 0.16
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.27
Consensus pattern (18 bp):
AAATTTAAAAGAGTAAAG
Found at i:67051139 original size:15 final size:15
Alignment explanation
Indices: 67051119--67051149 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
67051109 CAATCAGGAA
67051119 CTAAAAATGCAAATT
1 CTAAAAATGCAAATT
67051134 CTAAAAATGCAAATT
1 CTAAAAATGCAAATT
67051149 C
1 C
67051150 CCCAAGTCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.16, G:0.06, T:0.26
Consensus pattern (15 bp):
CTAAAAATGCAAATT
Found at i:67051399 original size:21 final size:21
Alignment explanation
Indices: 67051373--67051415 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
67051363 GGTTCGCTGT
*
67051373 ATTGGATTAGAGGTGTATTGG
1 ATTGGATTAGAGGTGTAATGG
67051394 ATTGGATTAGAGGTGTAATGG
1 ATTGGATTAGAGGTGTAATGG
67051415 A
1 A
67051416 ATAGAGGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (21 bp):
ATTGGATTAGAGGTGTAATGG
Found at i:67051415 original size:16 final size:16
Alignment explanation
Indices: 67051396--67051428 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
67051386 TGTATTGGAT
*
67051396 TGGATTAGAGGTGTAA
1 TGGAATAGAGGTGTAA
67051412 TGGAATAGAGGTGTAA
1 TGGAATAGAGGTGTAA
67051428 T
1 T
67051429 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (16 bp):
TGGAATAGAGGTGTAA
Done.