Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 201 of 344
Found at i:67051473 original size:45 final size:44
Alignment explanation
Indices: 67051407--67051501 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
67051397 GGATTAGAGG
* *
67051407 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
67051452 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
67051496 TGTAAT
1 TGTAAT
67051502 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:67051684 original size:18 final size:17
Alignment explanation
Indices: 67051663--67051697 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
67051653 TTATTATTTA
*
67051663 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
67051681 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
67051698 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:67051691 original size:28 final size:27
Alignment explanation
Indices: 67051621--67051693 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
67051611 TTTATTATCA
*
67051621 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
67051649 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
67051676 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
67051694 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:67051810 original size:144 final size:147
Alignment explanation
Indices: 67051582--67051853 Score: 487
Period size: 144 Copynumber: 1.9 Consensus size: 147
67051572 ATGATTATTG
67051582 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTA--TATTATCAAAAATAAATAATTTAATCATATTTAA
*
67051647 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
64 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
67051712 AGAAATTTGTTTTGGTAAA
129 AGAAATTTGTTTTGGTAAA
*
67051731 TTATT-TTATTTAAATTTTAATAAGATTA-A-TATCAATAATAAATAATTTAATCATATTTAAAC
1 TTATTGTTATTTAAATTTTAATAAGATTATATTATCAAAAATAAATAATTTAATCATATTTAAAC
67051793 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
67051854 ATATTCTTAT
Statistics
Matches: 121, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
144 92 0.76
145 1 0.01
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TTATTGTTATTTAAATTTTAATAAGATTATATTATCAAAAATAAATAATTTAATCATATTTAAAC
ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAG
AAATTTGTTTTGGTAAA
Found at i:67051828 original size:18 final size:17
Alignment explanation
Indices: 67051807--67051841 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
67051797 TTATTATTAA
*
67051807 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
67051825 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
67051842 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:67051885 original size:54 final size:54
Alignment explanation
Indices: 67051827--67052005 Score: 128
Period size: 55 Copynumber: 3.1 Consensus size: 54
67051817 ATTAAAATAT
*
67051827 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
** * * * * *
67051881 ATAATATATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAATAT-AATATAATTAAAA
1 ATAAT-T-T-A-A---TAAAAT-TCTTAATAA-TTAA-TATTCTT--ATATGAAT-TTACTCAAA
*
67051944 TAT
53 -AC
*
67051947 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
67052001 ATAAT
1 ATAAT
67052006 ATATGATTAT
Statistics
Matches: 91, Mismatches: 18, Indels: 32
0.65 0.13 0.23
Matches are distributed among these distances:
54 10 0.11
55 11 0.12
56 4 0.04
57 7 0.08
58 5 0.05
59 11 0.12
61 11 0.12
62 5 0.05
63 7 0.08
64 4 0.04
65 11 0.12
66 5 0.05
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
Found at i:67051887 original size:61 final size:61
Alignment explanation
Indices: 67051822--67052009 Score: 190
Period size: 61 Copynumber: 3.1 Consensus size: 61
67051812 TTTTAATTAA
*
67051822 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * * *
67051883 AATATATGATACT-GTAAAA-T-ATAA-AATAACATAATTATTAT-TAAATATAAT-ATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAATAATTA-AT-ATTCTTATATGAATTTACTCA-AATCAT
67051942 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
67052003 AATATAT
1 AATATAT
67052010 GATTATAACT
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
58 6 0.06
59 29 0.31
60 16 0.17
61 37 0.39
62 6 0.06
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
Found at i:67051920 original size:120 final size:120
Alignment explanation
Indices: 67051790--67052012 Score: 419
Period size: 120 Copynumber: 1.9 Consensus size: 120
67051780 ATCATATTTA
* *
67051790 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
67051855 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
67051910 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
67051975 TATTCTTATATGAATTTACTCAAATCATAATATATGAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGAT
67052013 TATAACTAAT
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 100 1.00
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
Found at i:67051948 original size:18 final size:17
Alignment explanation
Indices: 67051927--67051961 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
67051917 TTATTATTAA
67051927 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
67051945 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
67051962 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:67052024 original size:17 final size:16
Alignment explanation
Indices: 67052002--67052048 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
67051992 ACTCAAATCA
67052002 TAATATATGATTATAAC
1 TAATATATGATT-TAAC
*
67052019 T-A-ATATGATTTAAT
1 TAATATATGATTTAAC
67052033 TAAATATATGATTTAA
1 T-AATATATGATTTAA
67052049 TAAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 4 0.15
15 8 0.31
16 2 0.08
17 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (16 bp):
TAATATATGATTTAAC
Found at i:67052049 original size:17 final size:17
Alignment explanation
Indices: 67052021--67052054 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
67052011 ATTATAACTA
*
67052021 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
67052038 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
67052055 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:67052197 original size:93 final size:92
Alignment explanation
Indices: 67052087--67052281 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
67052077 GATTATAGTT
* * *
67052087 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTAT-ATAATAATATATAATTTC
* *
67052150 ATAAAATTCTTGATAATAAAAATTTTCTTA
64 ATAAAATTCTTAATAAT-AAAATGTTCTTA
* *
67052180 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
67052245 AAAATTCTTAATAATAAAATGTTCTTA
66 AAAATTCTTAATAATAAAATGTTCTTA
67052272 TATGAATTTA
1 TATGAATTTA
67052282 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 21 0.23
93 68 0.73
94 4 0.04
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (92 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAATGTTCTTA
Found at i:67060713 original size:20 final size:20
Alignment explanation
Indices: 67060669--67060715 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
67060659 TATTGGTTAT
**
67060669 ATTTTA-ATATTTAAAATTT
1 ATTTTATATATTTAAAATAA
*
67060688 AGTTTATATATTTAAAATAA
1 ATTTTATATATTTAAAATAA
67060708 ATTTTATA
1 ATTTTATA
67060716 AATAATTAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (20 bp):
ATTTTATATATTTAAAATAA
Found at i:67062394 original size:3 final size:3
Alignment explanation
Indices: 67062386--67062425 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
67062376 TCATTATTTT
67062386 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
67062426 CAAAATTGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:67066573 original size:47 final size:48
Alignment explanation
Indices: 67066492--67066582 Score: 139
Period size: 47 Copynumber: 1.9 Consensus size: 48
67066482 CAATGCTTTT
*
67066492 TTTCTATAAACCTCCCCCATGCATCTAGGAGCAGGGCCACTTTACCAC
1 TTTCTATAAACCTCCCCCATGCATCGAGGAGCAGGGCCACTTTACCAC
* * *
67066540 TTTCTATAAGCCTCTCCTATG-ATCGAGGAGCAGGGCCACTTTA
1 TTTCTATAAACCTCCCCCATGCATCGAGGAGCAGGGCCACTTTA
67066583 TCACCTCCCG
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 21 0.54
48 18 0.46
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (48 bp):
TTTCTATAAACCTCCCCCATGCATCGAGGAGCAGGGCCACTTTACCAC
Found at i:67066945 original size:33 final size:33
Alignment explanation
Indices: 67066893--67066958 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
67066883 AAAAGCTATA
**
67066893 TTCAAACAGTAAGTGTACTTGTTTGCAAACATG
1 TTCAAACAGTAAGCATACTTGTTTGCAAACATG
* *
67066926 TTCAAACATTAAGCATACTTGTTTGCGAACATG
1 TTCAAACAGTAAGCATACTTGTTTGCAAACATG
67066959 ATTGAACATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (33 bp):
TTCAAACAGTAAGCATACTTGTTTGCAAACATG
Found at i:67069572 original size:23 final size:24
Alignment explanation
Indices: 67069546--67069603 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 24
67069536 TTATTTCCTA
67069546 TAATATAATATCT-TAA-TTTTAAT
1 TAATATAATAT-TATAAGTTTTAAT
67069569 TAATATAAT-TTATAATGTTTTAAT
1 TAATATAATATTATAA-GTTTTAAT
67069593 TAA-ATAATATT
1 TAATATAATATT
67069604 TTTATAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
21 1 0.03
22 4 0.13
23 14 0.45
24 12 0.39
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (24 bp):
TAATATAATATTATAAGTTTTAAT
Found at i:67074193 original size:25 final size:23
Alignment explanation
Indices: 67074125--67074212 Score: 85
Period size: 22 Copynumber: 3.9 Consensus size: 23
67074115 TACATATTAG
*
67074125 AAATA-ATAATAATATTAAAAAC
1 AAATACATAATAATATTAAAAAT
* * *
67074147 AACTA-TTAATAATACTACATAAAT
1 AAATACATAATAATATTA-A-AAAT
*
67074171 ATATACAT-AT-ATATTAAAAAT
1 AAATACATAATAATATTAAAAAT
67074192 AAATACATAATAATATTAAAA
1 AAATACATAATAATATTAAAA
67074213 TGATGATAAT
Statistics
Matches: 52, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
21 11 0.21
22 17 0.33
23 15 0.29
24 8 0.15
25 1 0.02
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (23 bp):
AAATACATAATAATATTAAAAAT
Found at i:67076196 original size:88 final size:88
Alignment explanation
Indices: 67076016--67076405 Score: 428
Period size: 88 Copynumber: 4.4 Consensus size: 88
67076006 GACTCTGGGT
** * * *
67076016 TCAACTCACCTCTCGCGCTATGAGTTGACTTTTTGAAAAAAAGACATTAAAAAAACCAGA-ATGT
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG-AAAACAGAAATT-GAAAAA-CAGATA-GT
* **
67076080 GAAAATAACTTGGCATGTGACCCGAGGC
61 GAAAATACCTCAGCATGTGACCCGAGGC
* *
67076108 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGAAAAACAGATCGTGAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAAACAGATAGTGAAAA
67076173 TACCTCAGCATGTGACCCGAGGC
66 TACCTCAGCATGTGACCCGAGGC
* * * * * *
67076196 TCAAGTCACCTCTCGCAATATGAGCTGATTTTTTTG-AAACATAAATTGAAGAACAGA-AATTAA
1 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAAAAACAGATAGTGAA
* *
67076259 AATTACCTCAGCGTGTGAGCCGAGGC
64 AA-TACCTCAGCATGTGACCCGAGGC
* * * *
67076285 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACGAACAGAAATTGAAAAATAGAAATTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAAAACAGATAGTGAAA
* * *
67076349 ATACCTCAGCATTTGAACTGAGGC
65 ATACCTCAGCATGTGACCCGAGGC
* *
67076373 TGAACTCACCTCTCACAATATGAGTTGATTTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
67076406 TTGATGAACA
Statistics
Matches: 256, Mismatches: 34, Indels: 19
0.83 0.11 0.06
Matches are distributed among these distances:
86 5 0.02
88 124 0.48
89 80 0.31
90 15 0.06
91 6 0.02
92 26 0.10
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (88 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAAACAGATAGTGAAAA
TACCTCAGCATGTGACCCGAGGC
Found at i:67083662 original size:22 final size:22
Alignment explanation
Indices: 67083636--67083680 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
67083626 AATGGATGAA
67083636 TGAATAAATGACAAATAAATGT
1 TGAATAAATGACAAATAAATGT
* *
67083658 TGAATAAATGACGAATGAATGT
1 TGAATAAATGACAAATAAATGT
67083680 T
1 T
67083681 AGTCATGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.04, G:0.18, T:0.29
Consensus pattern (22 bp):
TGAATAAATGACAAATAAATGT
Found at i:67087470 original size:11 final size:11
Alignment explanation
Indices: 67087458--67087498 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
67087448 ATATTAGAAG
*
67087458 TATATACATAG
1 TATATACATAA
*
67087469 TAT-TA-AAAA
1 TATATACATAA
67087478 TATATACATAA
1 TATATACATAA
67087489 TATATACATA
1 TATATACATA
67087499 TTAGAAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
9 5 0.20
10 4 0.16
11 16 0.64
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (11 bp):
TATATACATAA
Found at i:67087470 original size:45 final size:47
Alignment explanation
Indices: 67087421--67087524 Score: 133
Period size: 47 Copynumber: 2.3 Consensus size: 47
67087411 CATATAATGC
* * *
67087421 TAGTATTAAAAAAATATACA-CA-ATATA-ATATTAGAAGTATATACA
1 TAGTATTAAAAAAATATACATAATATATACATATTAGAAATA-ATAAA
*
67087466 TAGTATTAAAAATATATACATAATATATACATATTAGAAATAATAAA
1 TAGTATTAAAAAAATATACATAATATATACATATTAGAAATAATAAA
*
67087513 TAATATTAAAAA
1 TAGTATTAAAAA
67087525 CAACTATTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
45 19 0.37
46 1 0.02
47 20 0.39
48 11 0.22
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.33
Consensus pattern (47 bp):
TAGTATTAAAAAAATATACATAATATATACATATTAGAAATAATAAA
Found at i:67087728 original size:3 final size:3
Alignment explanation
Indices: 67087653--67087710 Score: 66
Period size: 3 Copynumber: 19.7 Consensus size: 3
67087643 CATATAAGTG
* * *
67087653 TAA TAA TAG TAT TAA -AA TTAA TAA TAA TAA TAA TAA TAA TGA TAA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA
67087698 TAA T-A TAA TAA TA
1 TAA TAA TAA TAA TA
67087711 GTAGCTATAG
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
2 4 0.09
3 41 0.87
4 2 0.04
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:67090377 original size:41 final size:41
Alignment explanation
Indices: 67090316--67090576 Score: 380
Period size: 41 Copynumber: 6.4 Consensus size: 41
67090306 GTTTTATTAA
* *
67090316 AAAACGCCGCT-AAAACCAGAGCATTAGCGGCGCTTTTCCT
1 AAAACGCCGCTAAAAACCAGAGCATCAGCGGCGCTTTTCGT
* * * * *
67090356 AAAACGCTGCAAAAAATCAGAGCATTAGCGGCGCTTTTCCT
1 AAAACGCCGCTAAAAACCAGAGCATCAGCGGCGCTTTTCGT
* *
67090397 AAAACGCCGCAAAAAACCAGAGCATTAGCGGCGCTTTTCGT
1 AAAACGCCGCTAAAAACCAGAGCATCAGCGGCGCTTTTCGT
* *
67090438 AAAATGCCGCTAAACACCAGAGCATCAGCGGCGCTTTTCGT
1 AAAACGCCGCTAAAAACCAGAGCATCAGCGGCGCTTTTCGT
* *
67090479 AAAACGCCGCTAAATACCAGAGCATCAGCAGCGCTTTTCGT
1 AAAACGCCGCTAAAAACCAGAGCATCAGCGGCGCTTTTCGT
* *
67090520 AAAACACCGCTAAACACCAGAGCATCAGCGGCGCTTTTCGT
1 AAAACGCCGCTAAAAACCAGAGCATCAGCGGCGCTTTTCGT
67090561 AAAACGCCGCTAAAAA
1 AAAACGCCGCTAAAAA
67090577 TCTCATAACC
Statistics
Matches: 202, Mismatches: 18, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
40 9 0.04
41 193 0.96
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.18
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATCAGCGGCGCTTTTCGT
Found at i:67090755 original size:14 final size:14
Alignment explanation
Indices: 67090733--67090771 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
67090723 TTAATTATCA
* *
67090733 TTATAGTTTAAGGT
1 TTATGGTTTAAGAT
67090747 TTATGGTTTAAGAT
1 TTATGGTTTAAGAT
*
67090761 ATATGGTTTAA
1 TTATGGTTTAA
67090772 ACATGTTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAAGAT
Found at i:67091708 original size:24 final size:24
Alignment explanation
Indices: 67091658--67091708 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
67091648 TATATGAGAT
* * *
67091658 AAATATATATAAAATATTATTTTA
1 AAATATATATAAAATATCATATGA
67091682 AAATATATAT-AAATATACATATGA
1 AAATATATATAAAATAT-CATATGA
67091706 AAA
1 AAA
67091709 GTGGTTAGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 6 0.26
24 17 0.74
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (24 bp):
AAATATATATAAAATATCATATGA
Found at i:67093214 original size:61 final size:62
Alignment explanation
Indices: 67093101--67093220 Score: 224
Period size: 62 Copynumber: 2.0 Consensus size: 62
67093091 CCAAAATTTG
*
67093101 ATTTCTTTTTTGTCATTTTTATGTCTGTTGTTTGGATATTTTTGTTCTGAAATGGAAAATTC
1 ATTTCTTTTTTGTCAGTTTTATGTCTGTTGTTTGGATATTTTTGTTCTGAAATGGAAAATTC
67093163 ATTTCTTTTTTGTCAGTTTTATGTCTGTTGTTTGGAT-TTTTTGTTCTGAAATGGAAAA
1 ATTTCTTTTTTGTCAGTTTTATGTCTGTTGTTTGGATATTTTTGTTCTGAAATGGAAAA
67093221 ACTAGTTTGT
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
61 21 0.37
62 36 0.63
ACGTcount: A:0.19, C:0.07, G:0.17, T:0.56
Consensus pattern (62 bp):
ATTTCTTTTTTGTCAGTTTTATGTCTGTTGTTTGGATATTTTTGTTCTGAAATGGAAAATTC
Found at i:67093931 original size:15 final size:15
Alignment explanation
Indices: 67093911--67093942 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
67093901 AAACATATAA
67093911 TCCAAATATTCACTG
1 TCCAAATATTCACTG
67093926 TCCAAATATTCACTG
1 TCCAAATATTCACTG
67093941 TC
1 TC
67093943 AAAACATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.34
Consensus pattern (15 bp):
TCCAAATATTCACTG
Found at i:67095613 original size:288 final size:290
Alignment explanation
Indices: 67095097--67095812 Score: 1391
Period size: 288 Copynumber: 2.5 Consensus size: 290
67095087 CCAACCTTAT
*
67095097 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGATTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
67095162 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
67095227 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACATTAATTTATT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACATTAATTTATT
67095292 TCCAATTTACTTATAAAAATTAAACTACGATTC-TTTTTGATATTATTATATTCAAATTACTA-T
196 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATT
67095355 TTTTTATATTAATAATGTTTGATTTTAATA
261 TTTTTATATTAATAATGTTTGATTTTAATA
67095385 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
67095450 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
67095515 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACATTAATTTATT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACATTAATTTATT
67095580 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATT
196 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATT
67095645 TTTTTATATTAATAATGTTTGATTTTAATA
261 TTTTTATATTAATAATGTTTGATTTTAATA
* *
67095675 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGATGGGTTGCCTTATATCAAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
67095740 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
67095805 AAAGACTT
131 AAAGACTT
67095813 TTTATCACAA
Statistics
Matches: 423, Mismatches: 3, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
288 227 0.54
289 29 0.07
290 167 0.39
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (290 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACATTAATTTATT
TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAATTACTATT
TTTTTATATTAATAATGTTTGATTTTAATA
Found at i:67096061 original size:15 final size:15
Alignment explanation
Indices: 67096017--67096072 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
67096007 AACGACATGT
*
67096017 ATATTACTTAATTAAA
1 ATATTATTTAATT-AA
67096033 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
67096046 ATATTATTTAATTAA
1 ATATTATTTAATTAA
67096061 ATATTATTTAAT
1 ATATTATTTAAT
67096073 CCCGCTACTT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
12 3 0.09
13 7 0.20
14 2 0.06
15 16 0.46
16 4 0.11
17 3 0.09
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:67096217 original size:9 final size:9
Alignment explanation
Indices: 67096177--67096310 Score: 153
Period size: 9 Copynumber: 15.0 Consensus size: 9
67096167 TATTTGATAT
*
67096177 CATAATTTA
1 CATAACTTA
*
67096186 TATAACTTA
1 CATAACTTA
* *
67096195 CAAAACGTA
1 CATAACTTA
67096204 CATAACTTA
1 CATAACTTA
*
67096213 TATAACTTA
1 CATAACTTA
* *
67096222 GATAA-ATA
1 CATAACTTA
*
67096230 TATAACTTA
1 CATAACTTA
*
67096239 TATAACTTA
1 CATAACTTA
67096248 CATAACTTA
1 CATAACTTA
* *
67096257 TATAACATA
1 CATAACTTA
67096266 CATAACTTA
1 CATAACTTA
67096275 CATAACTTA
1 CATAACTTA
*
67096284 TATAACTTA
1 CATAACTTA
67096293 CATAACTTA
1 CATAACTTA
67096302 CATAACTTA
1 CATAACTTA
67096311 TATGTTGTCA
Statistics
Matches: 105, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
8 6 0.06
9 99 0.94
ACGTcount: A:0.47, C:0.16, G:0.01, T:0.36
Consensus pattern (9 bp):
CATAACTTA
Found at i:67102094 original size:31 final size:31
Alignment explanation
Indices: 67102048--67102114 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
67102038 TGATTGTATT
* *
67102048 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
67102079 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
67102110 TTTTA
1 TTTTA
67102115 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:67102555 original size:48 final size:47
Alignment explanation
Indices: 67102463--67102555 Score: 107
Period size: 48 Copynumber: 1.9 Consensus size: 47
67102453 CTAATAAGAG
* * * * *
67102463 TGTAGTAAGGTTGAAATACCTTATTCTAATCAATACATATAGAAGAAT
1 TGTAATAAGGTTGAAAAACCATATTCTAA-CAATAAATAAAGAAGAAT
67102511 TGTAATAAGGTTGAAAAACCATATTCTAA-AATAAAATAAAAGAAG
1 TGTAATAAGGTTGAAAAACCATATTCTAACAAT-AAAT-AAAGAAG
67102556 TGTAGTTCTA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
46 3 0.08
47 3 0.08
48 32 0.84
ACGTcount: A:0.48, C:0.09, G:0.14, T:0.29
Consensus pattern (47 bp):
TGTAATAAGGTTGAAAAACCATATTCTAACAATAAATAAAGAAGAAT
Found at i:67102775 original size:21 final size:20
Alignment explanation
Indices: 67102751--67102790 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
67102741 TAGCATATAA
67102751 TTAGATATTTAATTTATACAG
1 TTAG-TATTTAATTTATACAG
**
67102772 TTAGTATTTTTTTTATACA
1 TTAGTATTTAATTTATACA
67102791 TAAATTAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (20 bp):
TTAGTATTTAATTTATACAG
Found at i:67113967 original size:275 final size:272
Alignment explanation
Indices: 67113465--67113982 Score: 829
Period size: 275 Copynumber: 1.9 Consensus size: 272
67113455 AATGAGCTAC
* * * *
67113465 TTACAGCATCACGTCTACCTAAAGAAGGAACACAACATACTTTTGATAATGTTGACCTTGCCAAG
1 TTACAGAATCACGCCTACCTAAAGAAGCAACACAACATACTTTTGATAATGTTGACATTGCCAAG
* * * * *
67113530 CATGATGCGGGTGAGTTCCATGATGCCAATTCTGATCAGCAATGGCGACAAGTATTTGAACCCTT
66 CATGATACAGGTAAGTTCAATGATGCCAATTCTGATCAGCAATGGCGACAAGTATTTGAACCATT
**
67113595 CTACAATGGTGAAGATGGTGAGTTATCAAAGCTTGAAGAAAACTCATCATGGTTCTCCGGATATG
131 CTACAATGGTGAAGATCATGAGTTATCAAAGCTTGAAGAAAACTCATCATGGTTCTCCGGATATG
67113660 ATCGTTGCAATATTTAGATCACACTTAACTGCAGAATCATGTATGTATTATTAGTAACAGTTTCT
196 ATCGTTGCAATATTTAGATCACACTTAACTGCAGAATCATGTATGTATTATTAGTAACAGTTTCT
67113725 CTCACGTTTAAT
261 CTCACGTTTAAT
* * **
67113737 TTACAGAATCATGCCTACCTAAAGAAGCAATACAACATACTTTTGATAATGTTGACATTGCTGAG
1 TTACAGAATCACGCCTACCTAAAGAAGCAACACAACATACTTTTGATAATGTTGACATTGCCAAG
67113802 CATGATACAGGTAAGTTCAATGATGCCAATGATACTGATCAGCAATGGCGACAAGTATTTGAACC
66 CATGATACAGGTAAGTTCAATGATGCCAAT--T-CTGATCAGCAATGGCGACAAGTATTTGAACC
** *
67113867 ATTCTGTAATGGTGAAGATCATGAGTTATCAAAGCTTGAAGAAAACTCGTCATGGTTCTCCGGAT
128 ATTCTACAATGGTGAAGATCATGAGTTATCAAAGCTTGAAGAAAACTCATCATGGTTCTCCGGAT
**
67113932 ATGATCGTTGCAATATTTAGATCACGTTTAACTGCAGAATCATGTATGTAT
193 ATGATCGTTGCAATATTTAGATCACACTTAACTGCAGAATCATGTATGTAT
67113983 ACTAACAATT
Statistics
Matches: 223, Mismatches: 20, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
272 83 0.37
274 1 0.00
275 139 0.62
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30
Consensus pattern (272 bp):
TTACAGAATCACGCCTACCTAAAGAAGCAACACAACATACTTTTGATAATGTTGACATTGCCAAG
CATGATACAGGTAAGTTCAATGATGCCAATTCTGATCAGCAATGGCGACAAGTATTTGAACCATT
CTACAATGGTGAAGATCATGAGTTATCAAAGCTTGAAGAAAACTCATCATGGTTCTCCGGATATG
ATCGTTGCAATATTTAGATCACACTTAACTGCAGAATCATGTATGTATTATTAGTAACAGTTTCT
CTCACGTTTAAT
Found at i:67119543 original size:179 final size:179
Alignment explanation
Indices: 67119231--67119566 Score: 485
Period size: 179 Copynumber: 1.9 Consensus size: 179
67119221 ATAACAATCT
*
67119231 GTAATATTCAATCACCAAAATCAACCTAAATGACTTGCACAAAACTTCCAAAAGAACATCCACAC
1 GTAATATTCAATCACCAAAATCAACCCAAATGACTTGCACAAAACTTCCAAAAGAACATCCACAC
* * * ** * *
67119296 GCTTACCTCTTATGAACAGCCACCACATGAGTTCTACATCGTTAGAGGCTTACCAATCGCATCTT
66 ACTTACCTCTTACGAACAGCCACCACATGAGTTCTACATCGCTAGAGGCGCACCAACCGCAGCTT
*
67119361 GGACCTCTCCTAAGCATAACGAACCAACTCACCAAATTAGTAACAGTTC
131 GGACCTCTCCTAAGCATAACAAACCAACTCACCAAATTAGTAACAGTTC
* * *
67119410 GTAATATTCAATCACCAAAATCAACCCAAATGACTTGCACAACACTTCCAAAAGAACATCCATAT
1 GTAATATTCAATCACCAAAATCAACCCAAATGACTTGCACAAAACTTCCAAAAGAACATCCACAC
* * * * **
67119475 ACTTACCTCTTGCGAACAGCCACCACACT-AGTTCTACGTCGCTGGAGGCGCACCAGCCGTGGCT
66 ACTTACCTCTTACGAACAGCCACCACA-TGAGTTCTACATCGCTAGAGGCGCACCAACCGCAGCT
*
67119539 TGGACCTCTCCTAAGCATAGCAAACCAA
130 TGGACCTCTCCTAAGCATAACAAACCAA
67119567 TTAGATAGCA
Statistics
Matches: 137, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
179 136 0.99
180 1 0.01
ACGTcount: A:0.35, C:0.30, G:0.13, T:0.22
Consensus pattern (179 bp):
GTAATATTCAATCACCAAAATCAACCCAAATGACTTGCACAAAACTTCCAAAAGAACATCCACAC
ACTTACCTCTTACGAACAGCCACCACATGAGTTCTACATCGCTAGAGGCGCACCAACCGCAGCTT
GGACCTCTCCTAAGCATAACAAACCAACTCACCAAATTAGTAACAGTTC
Found at i:67124423 original size:47 final size:47
Alignment explanation
Indices: 67124345--67124844 Score: 802
Period size: 47 Copynumber: 10.6 Consensus size: 47
67124335 CCCTTCGGGA
* * * * * *
67124345 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67124392 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67124439 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67124486 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67124533 CTCATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67124580 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67124627 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67124676 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67124725 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67124772 ATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67124819 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
67124845 CACAATTATC
Statistics
Matches: 427, Mismatches: 24, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 333 0.78
49 94 0.22
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67124880 original size:192 final size:189
Alignment explanation
Indices: 67124345--67124844 Score: 806
Period size: 192 Copynumber: 2.6 Consensus size: 189
67124335 CCCTTCGGGA
* * * * * * *
67124345 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCTTATCACATATATACAC
* * *
67124410 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTCACATTCATCACATC
*
67124475 GGCCATTAGGCCTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 GGCCATTAGGCCT-ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67124533 CTCATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCTTATCACATATATACAC
67124598 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA--TTCACATTCATCACA
* *
67124663 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
129 TCGGCCATTAGGCC-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67124725 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCTTATCACATATATACAC
67124790 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTCACAT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTCACAT
67124845 CACAATTATC
Statistics
Matches: 290, Mismatches: 17, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
188 102 0.35
190 41 0.14
191 1 0.00
192 146 0.50
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (189 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTCACATTCATCACATC
GGCCATTAGGCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67128300 original size:40 final size:40
Alignment explanation
Indices: 67128268--67128455 Score: 245
Period size: 40 Copynumber: 4.7 Consensus size: 40
67128258 CCAGCATGAT
* * * *
67128268 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
67128308 TGCTCTTCGAGG-TTTAGCACGGATATATTACTAGCACGAA
1 TGCTCTTCG-GGACTTAGCCCGGATACATCACTAGCACGAA
* * *
67128348 TGCTCTTCGGAACTTAGCCTGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
67128388 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
67128428 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
67128456 GTCGAGACCT
Statistics
Matches: 128, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 5 0.04
40 121 0.95
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:67130757 original size:47 final size:47
Alignment explanation
Indices: 67130679--67131180 Score: 779
Period size: 47 Copynumber: 10.6 Consensus size: 47
67130669 CCCTTCGGTA
* * * * * * *
67130679 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67130726 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67130773 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67130820 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67130867 CTCATCACATATATACACTTTCACATTCATCACATTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67130914 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67130961 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67131010 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67131057 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67131106 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67131155 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
67131181 CACAATTATC
Statistics
Matches: 424, Mismatches: 27, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 284 0.67
49 140 0.33
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67140728 original size:20 final size:19
Alignment explanation
Indices: 67140703--67140744 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
67140693 AAAAAGAATT
67140703 GAAGAAAAGAAAGAAACAGA
1 GAAGAAAAGAAAGAAA-AGA
*
67140723 GAAGAAAATAAAGAAAAGA
1 GAAGAAAAGAAAGAAAAGA
67140742 GAA
1 GAA
67140745 ATACCATGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.71, C:0.02, G:0.24, T:0.02
Consensus pattern (19 bp):
GAAGAAAAGAAAGAAAAGA
Found at i:67141128 original size:56 final size:53
Alignment explanation
Indices: 67141058--67141167 Score: 175
Period size: 56 Copynumber: 2.0 Consensus size: 53
67141048 GGGGCATTAC
* *
67141058 AGGTTAGCTATAAGGAATATCAACAAGTAAGCTTTTTAAGTAAGATTTACTTTTTA
1 AGGTTAGCTATAAGGAATATCAAAAAGTAAGC---TTAAGTAAGATTCACTTTTTA
67141114 AGGTTAGCTATAAGGAATATCAAAAAGTAAGCTTAAGTAAGATTCACTTTTTA
1 AGGTTAGCTATAAGGAATATCAAAAAGTAAGCTTAAGTAAGATTCACTTTTTA
67141167 A
1 A
67141168 ACTAACTTTT
Statistics
Matches: 52, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
53 21 0.40
56 31 0.60
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.35
Consensus pattern (53 bp):
AGGTTAGCTATAAGGAATATCAAAAAGTAAGCTTAAGTAAGATTCACTTTTTA
Found at i:67141464 original size:3 final size:3
Alignment explanation
Indices: 67141456--67141491 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
67141446 ACAATAGTAG
67141456 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
67141492 AAGAGAATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:67147905 original size:30 final size:30
Alignment explanation
Indices: 67147871--67147938 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 30
67147861 AAGCCCACAC
* *
67147871 ATTTCATTTA-TTTCACATTTTAGTCCCTCA
1 ATTTCATTTATTTTCACAATTTAATCCCT-A
*
67147901 ATTTC--TCATTTTCACAATTTAATCCCTA
1 ATTTCATTTATTTTCACAATTTAATCCCTA
67147929 ATATTCATTT
1 AT-TTCATTT
67147939 TTACTCAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
28 5 0.17
29 19 0.63
30 5 0.17
31 1 0.03
ACGTcount: A:0.26, C:0.22, G:0.01, T:0.50
Consensus pattern (30 bp):
ATTTCATTTATTTTCACAATTTAATCCCTA
Found at i:67147915 original size:29 final size:27
Alignment explanation
Indices: 67147881--67147939 Score: 73
Period size: 29 Copynumber: 2.1 Consensus size: 27
67147871 ATTTCATTTA
* * *
67147881 TTTCACATTTTAGTCCCTCAATTTCTCAT
1 TTTCACAATTTAATCCCT-AATAT-TCAT
67147910 TTTCACAATTTAATCCCTAATATTCAT
1 TTTCACAATTTAATCCCTAATATTCAT
67147937 TTT
1 TTT
67147940 TACTCAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 7 0.26
28 4 0.15
29 16 0.59
ACGTcount: A:0.25, C:0.24, G:0.02, T:0.49
Consensus pattern (27 bp):
TTTCACAATTTAATCCCTAATATTCAT
Found at i:67175112 original size:25 final size:25
Alignment explanation
Indices: 67175073--67175130 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
67175063 CCATGTACAT
* *
67175073 GTATGCTCATACGAGCTGTGAATCA
1 GTATGCTCATACGAGATGTAAATCA
*
67175098 GTATGCTCACT-CGAGATGTAAATCG
1 GTATGCTCA-TACGAGATGTAAATCA
67175123 GTATGCTC
1 GTATGCTC
67175131 TCACTAGTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 28 0.97
26 1 0.03
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (25 bp):
GTATGCTCATACGAGATGTAAATCA
Found at i:67175167 original size:25 final size:25
Alignment explanation
Indices: 67175093--67175167 Score: 64
Period size: 25 Copynumber: 3.0 Consensus size: 25
67175083 ACGAGCTGTG
* *
67175093 AATCAGTATGCTCAC-TCGAGATGTA
1 AATCGGTATGCTCACAT-GAGATATA
* *
67175118 AATCGGTATGCTCTCACT-AGTTATA
1 AATCGGTATGCTCACA-TGAGATATA
* *
67175143 AATTGGTATGCTCACATGAGCTATA
1 AATCGGTATGCTCACATGAGATATA
67175168 GATTAGAACG
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
24 1 0.03
25 38 0.95
27 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32
Consensus pattern (25 bp):
AATCGGTATGCTCACATGAGATATA
Found at i:67176915 original size:25 final size:25
Alignment explanation
Indices: 67176887--67177003 Score: 83
Period size: 25 Copynumber: 4.7 Consensus size: 25
67176877 TCCCACCCAC
*
67176887 AGCTCGTGTAAGCATACCGATTTGT
1 AGCTCGTGTAAGCATACCGATTTAT
* * *
67176912 AGCTTGTG-AGAGCATACCAATCTAT
1 AGCTCGTGTA-AGCATACCGATTTAT
* * * *
67176937 AGCTCGAGTGAGCATACCGATTCAC
1 AGCTCGTGTAAGCATACCGATTTAT
* * * * *
67176962 AGCTCGAGTGAGCATATCGATTCAC
1 AGCTCGTGTAAGCATACCGATTTAT
* *
67176987 AGCTCGTTTGAGCATAC
1 AGCTCGTGTAAGCATAC
67177004 ATGTACATGA
Statistics
Matches: 75, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
24 1 0.01
25 74 0.99
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
AGCTCGTGTAAGCATACCGATTTAT
Found at i:67179201 original size:21 final size:21
Alignment explanation
Indices: 67179161--67179204 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
67179151 ATTTTAGATA
*
67179161 TTTATGTATTTTTGTTTTTAT
1 TTTATGTATTTTTGTATTTAT
67179182 TTTATGTATTTATT-TATTTAT
1 TTTATGTATTT-TTGTATTTAT
67179203 TT
1 TT
67179205 ATCTTATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.18, C:0.00, G:0.07, T:0.75
Consensus pattern (21 bp):
TTTATGTATTTTTGTATTTAT
Found at i:67180051 original size:21 final size:21
Alignment explanation
Indices: 67180027--67180072 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
67180017 GTGCCCCCTC
67180027 CACACGGCCATGTGTGGCCTT
1 CACACGGCCATGTGTGGCCTT
***
67180048 CACACGGGTGTGTGTGGCCTT
1 CACACGGCCATGTGTGGCCTT
67180069 CACA
1 CACA
67180073 TAGGCGTGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.15, C:0.30, G:0.30, T:0.24
Consensus pattern (21 bp):
CACACGGCCATGTGTGGCCTT
Found at i:67180086 original size:21 final size:21
Alignment explanation
Indices: 67180062--67180101 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
67180052 CGGGTGTGTG
67180062 TGGCCTTCACATAGGCGTGCA
1 TGGCCTTCACATAGGCGTGCA
* *
67180083 TGGCCTTTACATGGGCGTG
1 TGGCCTTCACATAGGCGTG
67180102 TAGACTCCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.25, G:0.33, T:0.28
Consensus pattern (21 bp):
TGGCCTTCACATAGGCGTGCA
Found at i:67186251 original size:19 final size:19
Alignment explanation
Indices: 67186229--67186295 Score: 98
Period size: 19 Copynumber: 3.5 Consensus size: 19
67186219 AATAATTATC
67186229 TTAATATTATTTTATTAAT
1 TTAATATTATTTTATTAAT
67186248 TTAATATTATTTTATTAAT
1 TTAATATTATTTTATTAAT
* * *
67186267 TTAATATTAATGTGATTATT
1 TTAATATT-ATTTTATTAAT
67186287 TTAATATTA
1 TTAATATTA
67186296 AATTTAATCT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
19 28 0.64
20 16 0.36
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (19 bp):
TTAATATTATTTTATTAAT
Found at i:67189285 original size:20 final size:19
Alignment explanation
Indices: 67189241--67189285 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
67189231 TGGTGAGATC
*
67189241 TAAAATAAATCAAACTAAT
1 TAAAATAAATAAAACTAAT
* *
67189260 TGAAATATATAAAACTTAAT
1 TAAAATAAATAAAAC-TAAT
67189280 TAAAAT
1 TAAAAT
67189286 CGACTCTACC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.31
Consensus pattern (19 bp):
TAAAATAAATAAAACTAAT
Found at i:67208739 original size:29 final size:29
Alignment explanation
Indices: 67208675--67208740 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
67208665 ATTTCATTTA
* * *
67208675 TTTCACAATTTAACCCCTAAATTTACACT
1 TTTCTCAATTTAACCCCTAAATATACAAT
* *
67208704 TTTCTCAATTTAATCCCT-AATATGCAAT
1 TTTCTCAATTTAACCCCTAAATATACAAT
67208732 TTTACTCAA
1 TTT-CTCAA
67208741 AATCACTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.33, C:0.24, G:0.02, T:0.41
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTAAATATACAAT
Found at i:67215102 original size:24 final size:24
Alignment explanation
Indices: 67215075--67215131 Score: 96
Period size: 24 Copynumber: 2.4 Consensus size: 24
67215065 AATAGTTGAC
*
67215075 ATTTGACTATTAGGTAAATTTTAA
1 ATTTGAATATTAGGTAAATTTTAA
*
67215099 ATTTGAATATTGGGTAAATTTTAA
1 ATTTGAATATTAGGTAAATTTTAA
67215123 ATTTGAATA
1 ATTTGAATA
67215132 ATGATATGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.39, C:0.02, G:0.14, T:0.46
Consensus pattern (24 bp):
ATTTGAATATTAGGTAAATTTTAA
Found at i:67216417 original size:13 final size:13
Alignment explanation
Indices: 67216399--67216435 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
67216389 GCTCGGCAGG
67216399 GACACGCCCGTAT
1 GACACGCCCGTAT
*
67216412 GACACGCCTGTAT
1 GACACGCCCGTAT
67216425 GACACGCCCGT
1 GACACGCCCGT
67216436 CTGAGTCGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.22, C:0.38, G:0.24, T:0.16
Consensus pattern (13 bp):
GACACGCCCGTAT
Found at i:67224957 original size:25 final size:25
Alignment explanation
Indices: 67224919--67224968 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
67224909 GAGATTGTAA
67224919 GACTGCATAAGGTCCCTGTCTCTAT
1 GACTGCATAAGGTCCCTGTCTCTAT
**
67224944 GACTGCATGGGGTCCCTGTCTCTAT
1 GACTGCATAAGGTCCCTGTCTCTAT
67224969 CATTTTCGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.16, C:0.28, G:0.24, T:0.32
Consensus pattern (25 bp):
GACTGCATAAGGTCCCTGTCTCTAT
Found at i:67226890 original size:43 final size:43
Alignment explanation
Indices: 67226802--67226912 Score: 118
Period size: 43 Copynumber: 2.6 Consensus size: 43
67226792 TACCGAAATG
* * *
67226802 TGATTACATGTCAGACCATGTCTGGGACATTGACATTGTATTA
1 TGATTACATGTAAGACCATGTCTGGAACATTGACATCGTATTA
*
67226845 TGATTACATGTAAGACCATGTCTGGAATATTGGA-ATCGT-TATA
1 TGATTACATGTAAGACCATGTCTGGAACATT-GACATCGTAT-TA
* * * *
67226888 TGATTTCATATAAAACCCTGTCTGG
1 TGATTACATGTAAGACCATGTCTGG
67226913 GATAGTGGCA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 1 0.02
43 55 0.95
44 2 0.03
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGAACATTGACATCGTATTA
Found at i:67242198 original size:20 final size:20
Alignment explanation
Indices: 67242170--67242208 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
67242160 ATCACATATT
*
67242170 TCATGAGCTCAGACCACAAC
1 TCATAAGCTCAGACCACAAC
*
67242190 TCATAAGCTCAGATCACAA
1 TCATAAGCTCAGACCACAA
67242209 AGTACCTAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.31, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATAAGCTCAGACCACAAC
Found at i:67247076 original size:37 final size:37
Alignment explanation
Indices: 67247026--67247104 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
67247016 TTATTATGAA
* * *
67247026 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
67247063 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
67247100 GTCTT
1 GTCTT
67247105 TAGCGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:67247333 original size:47 final size:47
Alignment explanation
Indices: 67247222--67247679 Score: 835
Period size: 47 Copynumber: 9.7 Consensus size: 47
67247212 GCCCTTCGGG
* *
67247222 ACTTATCACATTCATCACATTGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
67247272 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
67247319 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67247366 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
67247413 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
67247460 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67247507 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67247554 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
67247601 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67247648 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
67247680 ATACTATCAT
Statistics
Matches: 400, Mismatches: 8, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
47 363 0.91
49 33 0.08
50 4 0.01
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:67247453 original size:22 final size:23
Alignment explanation
Indices: 67247326--67247641 Score: 70
Period size: 22 Copynumber: 13.5 Consensus size: 23
67247316 TACACTTTCA
67247326 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
**** ***
67247349 CATT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTAGG
67247373 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
* **** ***
67247396 CCTT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTAGG
67247420 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
**** ***
67247443 CATT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTAGG
67247467 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
**** ***
67247490 CATT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTAGG
67247514 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
* **** ***
67247537 CCTT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTAGG
67247561 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
* **** ***
67247584 CCTT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTAGG
67247608 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
67247631 CATT-ATCACAT
1 CATTCATCACAT
67247642 ATATACACTT
Statistics
Matches: 185, Mismatches: 90, Indels: 37
0.59 0.29 0.12
Matches are distributed among these distances:
22 49 0.26
23 49 0.26
24 45 0.24
25 42 0.23
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.32
Consensus pattern (23 bp):
CATTCATCACATCGGCCATTAGG
Found at i:67247476 original size:25 final size:24
Alignment explanation
Indices: 67247304--67247666 Score: 88
Period size: 25 Copynumber: 15.4 Consensus size: 24
67247294 CCATTAGGCC
67247304 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
**** ***
67247328 TTCATCACAT-CGGCCA-TTAGGCA
1 TT-ATCACATATATACACTTTCACA
67247351 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
**** *** *
67247375 TTCATCACAT-CGGCCA-TTAGGCC
1 TT-ATCACATATATACACTTTCACA
67247398 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
**** ***
67247422 TTCATCACAT-CGGCCA-TTAGGCA
1 TT-ATCACATATATACACTTTCACA
67247445 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
**** ***
67247469 TTCATCACAT-CGGCCA-TTAGGCA
1 TT-ATCACATATATACACTTTCACA
67247492 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
**** *** *
67247516 TTCATCACAT-CGGCCA-TTAGGCC
1 TT-ATCACATATATACACTTTCACA
67247539 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
**** *** *
67247563 TTCATCACAT-CGGCCA-TTAGGCC
1 TT-ATCACATATATACACTTTCACA
67247586 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
**** ***
67247610 TTCATCACAT-CGGCCA-TTAGGCA
1 TT-ATCACATATATACACTTTCACA
67247633 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
67247657 TTCATCACAT
1 TT-ATCACAT
67247667 CGGCCATTAG
Statistics
Matches: 213, Mismatches: 104, Indels: 43
0.59 0.29 0.12
Matches are distributed among these distances:
22 49 0.23
23 53 0.25
24 55 0.26
25 56 0.26
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (24 bp):
TTATCACATATATACACTTTCACA
Found at i:67251389 original size:40 final size:40
Alignment explanation
Indices: 67251103--67251443 Score: 384
Period size: 40 Copynumber: 8.5 Consensus size: 40
67251093 AGCATGATTA
* * * *
67251103 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* ** * *
67251143 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
67251183 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* * *
67251223 CTCCTCGGGACTTAGCCCGGATATATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
67251263 CTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
67251303 CTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
** * * *
67251343 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATG
* ** *
67251384 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAATG
67251424 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
67251444 CATCATTCGA
Statistics
Matches: 261, Mismatches: 35, Indels: 10
0.85 0.11 0.03
Matches are distributed among these distances:
39 3 0.01
40 239 0.92
41 19 0.07
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:67251788 original size:29 final size:29
Alignment explanation
Indices: 67251749--67251827 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
67251739 CTTAATAATC
*
67251749 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
67251779 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
67251808 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
67251828 ACCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:67253795 original size:37 final size:37
Alignment explanation
Indices: 67253734--67253812 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
67253724 TTATTACGAA
* * * *
67253734 GTCTTACCCTGACATAATCTCCACACGAAGTTATCAG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
* *
67253771 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
67253808 GTCTT
1 GTCTT
67253813 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
Found at i:67254041 original size:47 final size:47
Alignment explanation
Indices: 67253930--67254754 Score: 1470
Period size: 47 Copynumber: 17.7 Consensus size: 47
67253920 GCCCTTCGGG
* *
67253930 ACTTATCACATTCATCACATTGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
67253980 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
67254027 ACTTTCACATTCATCACATCGACCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
67254074 ACTTTCACATTCATCACATCGGTCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67254121 ACTTTCACATTCATCACATCGGCCATTAGG-CTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
67254167 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67254214 ACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67254260 ACTTTCACATTCATCACATCGG-CATTAGG-CTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
67254305 ACTTTCACATTCATCACATCCGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67254352 ACTTTCACATTCATCACATC-GCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67254398 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67254445 ACTTTCACATTCATCACATCGGCCATTAGG-CTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67254491 ACTTTCACA-TCATCACATCGGCCATTAGG-CTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
67254536 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67254583 ACTTTCACATTCATCACATCGGCCATTAGG-CTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
67254629 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
67254676 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67254723 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
67254755 ATACTATCAT
Statistics
Matches: 753, Mismatches: 15, Indels: 17
0.96 0.02 0.02
Matches are distributed among these distances:
45 82 0.11
46 241 0.32
47 393 0.52
49 33 0.04
50 4 0.01
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:67254207 original size:93 final size:93
Alignment explanation
Indices: 67253930--67254753 Score: 1453
Period size: 93 Copynumber: 8.8 Consensus size: 93
67253920 GCCCTTCGGG
* *
67253930 ACTTATCACATTCATCACATTGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATC
1 ACTT-TCACATTCATCACATCGGCCATTAGG-CTTATCAC--ATATATACACTTTCACATTCATC
*
67253995 ACATCGGCCATTAGGCCTTATCACATATATAC
62 ACATCGGCCATTAGGCATTATCACATATATAC
*
67254027 ACTTTCACATTCATCACATCGACCATTAGGCATTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGC-TTATCACATATATACACTTTCACATTCATCACA
* *
67254092 TCGGTCATTAGGCCTTATCACATATATAC
65 TCGGCCATTAGGCATTATCACATATATAC
67254121 ACTTTCACATTCATCACATCGGCCATTAGGCTTATCACATATATACACTTTCACATTCATCACAT
1 ACTTTCACATTCATCACATCGGCCATTAGGCTTATCACATATATACACTTTCACATTCATCACAT
67254186 CGGCCATTAGGCATTATCACATATATAC
66 CGGCCATTAGGCATTATCACATATATAC
67254214 ACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGG-CTTATCACATATATACACTTTCACATTCATCACA
67254278 TCGG-CATTAGGC-TTATCACATATATAC
65 TCGGCCATTAGGCATTATCACATATATAC
*
67254305 ACTTTCACATTCATCACATCCGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGG-CTTATCACATATATACACTTTCACATTCATCACA
*
67254370 TC-GCCATTAGGCCTTATCACATATATAC
65 TCGGCCATTAGGCATTATCACATATATAC
67254398 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGG-CTTATCACATATATACACTTTCACATTCATCACA
67254463 TCGGCCATTAGGC-TTATCACATATATAC
65 TCGGCCATTAGGCATTATCACATATATAC
67254491 ACTTTCACA-TCATCACATCGGCCATTAGGCTTATCACATATATACACTTTCACATTCATCACAT
1 ACTTTCACATTCATCACATCGGCCATTAGGCTTATCACATATATACACTTTCACATTCATCACAT
67254555 CGGCCATTAGGCATTATCACATATATAC
66 CGGCCATTAGGCATTATCACATATATAC
67254583 ACTTTCACATTCATCACATCGGCCATTAGGCTTATCACATATATACACTTTCACATTCATCACAT
1 ACTTTCACATTCATCACATCGGCCATTAGGCTTATCACATATATACACTTTCACATTCATCACAT
67254648 CGGCCATTAGGCATTATCACATATATAC
66 CGGCCATTAGGCATTATCACATATATAC
67254676 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGC-TTATCACATATATACACTTTCACATTCATCACA
67254741 TCGGCCATTAGGC
65 TCGGCCATTAGGC
67254754 CATACTATCA
Statistics
Matches: 709, Mismatches: 9, Indels: 21
0.96 0.01 0.03
Matches are distributed among these distances:
91 84 0.12
92 111 0.16
93 339 0.48
94 140 0.20
95 1 0.00
96 30 0.04
97 4 0.01
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (93 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCATTATCACATATATAC
Found at i:67254343 original size:231 final size:233
Alignment explanation
Indices: 67253930--67254753 Score: 1487
Period size: 231 Copynumber: 3.5 Consensus size: 233
67253920 GCCCTTCGGG
* **
67253930 ACTTATCACATTCATCACATTGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCATTATCAC--ATATATACACTTTCACATTCATC
*
67253995 ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCAT
63 ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC-T
*
67254060 TATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGCCTTATCACATATATACACTT
127 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
67254125 TCACATTCATCACATCGGCCATTAGGCTTATCACATATATAC
192 TCACATTCATCACATCGGCCATTAGGCTTATCACATATATAC
67254167 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACA
67254232 TCGG-CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCTTATC
66 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCTTATC
*
67254295 ACATATATACACTTTCACATTCATCACATCCGCCATTAGGCCTTATCACATATATACACTTTCAC
131 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
67254360 ATTCATCACATC-GCCATTAGGCCTTATCACATATATAC
196 ATTCATCACATCGGCCATTAGG-CTTATCACATATATAC
*
67254398 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACA
67254463 TCGGCCATTAGG-CTTATCACATATATACACTTTCACA-TCATCACATCGGCCATTAGGCTTATC
66 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCTTATC
*
67254526 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCAC
131 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
67254591 ATTCATCACATCGGCCATTAGGCTTATCACATATATAC
196 ATTCATCACATCGGCCATTAGGCTTATCACATATATAC
67254629 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACA
*
67254694 TCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67254754 CATACTATCA
Statistics
Matches: 570, Mismatches: 11, Indels: 16
0.95 0.02 0.03
Matches are distributed among these distances:
230 21 0.04
231 369 0.65
232 48 0.08
233 66 0.12
234 30 0.05
236 32 0.06
237 4 0.01
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (233 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCTTATC
ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
ATTCATCACATCGGCCATTAGGCTTATCACATATATAC
Found at i:67254599 original size:25 final size:25
Alignment explanation
Indices: 67254523--67254601 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
67254513 CATTAGGCTT
67254523 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
67254548 ATCACAT-CGGCCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
67254570 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
67254595 ATCACAT
1 ATCACAT
67254602 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:67254669 original size:22 final size:23
Alignment explanation
Indices: 67254543--67254716 Score: 70
Period size: 23 Copynumber: 7.5 Consensus size: 23
67254533 TACACTTTCA
67254543 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
**** ***
67254566 CATT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTAGG
67254590 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
**** ***
67254613 C-TT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTAGG
67254636 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
**** ***
67254659 CATT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTAGG
67254683 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
67254706 CATT-ATCACAT
1 CATTCATCACAT
67254717 ATATACACTT
Statistics
Matches: 99, Mismatches: 42, Indels: 21
0.61 0.26 0.13
Matches are distributed among these distances:
21 7 0.07
22 25 0.25
23 26 0.26
24 20 0.20
25 21 0.21
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.32
Consensus pattern (23 bp):
CATTCATCACATCGGCCATTAGG
Found at i:67254741 original size:25 final size:25
Alignment explanation
Indices: 67254014--67254092 Score: 83
Period size: 25 Copynumber: 3.3 Consensus size: 25
67254004 ATTAGGCCTT
67254014 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * ***
67254039 ATCACATCGA-CCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
67254061 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
67254086 ATCACAT
1 ATCACAT
67254093 CGGTCATTAG
Statistics
Matches: 39, Mismatches: 12, Indels: 6
0.68 0.21 0.11
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 15 0.38
ACGTcount: A:0.35, C:0.28, G:0.04, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:67259163 original size:12 final size:11
Alignment explanation
Indices: 67259135--67259160 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
67259125 AAATATGATG
67259135 TTTTAAAATTA
1 TTTTAAAATTA
67259146 TTTTAAAATTA
1 TTTTAAAATTA
67259157 TTTT
1 TTTT
67259161 TAATGCTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAAATTA
Found at i:67260465 original size:47 final size:47
Alignment explanation
Indices: 67260371--67260497 Score: 141
Period size: 47 Copynumber: 2.7 Consensus size: 47
67260361 GTGTGAATAA
* * * * *
67260371 TACCTTAATTTGGCTAC-GACCATGGTATAGGTATTCAGAGAGGAGT
1 TACCTTGATTTGGCTACAGGCAATAGTATAGGTATTCAGAGAGAAGT
* *
67260417 TACCTTGATTTGGCTATAGGCAATAGTATAGGTATTCCAG-GATAAGT
1 TACCTTGATTTGGCTACAGGCAATAGTATAGGTATT-CAGAGAGAAGT
* * *
67260464 TACCTTGATTTGGCTACGGGCCATGGTATAGGTA
1 TACCTTGATTTGGCTACAGGCAATAGTATAGGTA
67260498 CTTATCGATT
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
46 15 0.22
47 50 0.74
48 3 0.04
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACAGGCAATAGTATAGGTATTCAGAGAGAAGT
Found at i:67264884 original size:16 final size:16
Alignment explanation
Indices: 67264863--67264893 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67264853 ATAAATTTGA
67264863 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
67264879 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
67264894 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:67265693 original size:65 final size:65
Alignment explanation
Indices: 67265612--67265742 Score: 262
Period size: 65 Copynumber: 2.0 Consensus size: 65
67265602 TTCCTTATTG
67265612 GGTCTAATTTTAATAGAAATAAACAACATGGTTATTTTAATTCTTTATAGGGAGAATATTAATTT
1 GGTCTAATTTTAATAGAAATAAACAACATGGTTATTTTAATTCTTTATAGGGAGAATATTAATTT
67265677 GGTCTAATTTTAATAGAAATAAACAACATGGTTATTTTAATTCTTTATAGGGAGAATATTAATTT
1 GGTCTAATTTTAATAGAAATAAACAACATGGTTATTTTAATTCTTTATAGGGAGAATATTAATTT
67265742 G
1 G
67265743 TAGTGAACAG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.41
Consensus pattern (65 bp):
GGTCTAATTTTAATAGAAATAAACAACATGGTTATTTTAATTCTTTATAGGGAGAATATTAATTT
Found at i:67272279 original size:16 final size:16
Alignment explanation
Indices: 67272258--67272288 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67272248 ATAAATTTGA
67272258 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
67272274 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
67272289 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:67279816 original size:25 final size:23
Alignment explanation
Indices: 67279797--67279878 Score: 92
Period size: 25 Copynumber: 3.3 Consensus size: 23
67279787 CGAGTGGAAG
67279797 ATCGGTATGCTCTCATGAGTAATAA
1 ATCGGTATGCTCTCATGAGT-A-AA
*
67279822 ATTGGTATGCTCTCATGAGCTATAA
1 ATCGGTATGCTCTCATGAG-TA-AA
*
67279847 ATCGGTATGCTCTCACGAGCTATAA
1 ATCGGTATGCTCTCATGAG-TA-AA
67279872 ATCGGTA
1 ATCGGTA
67279879 ACTCTAATGA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
25 52 0.98
26 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (23 bp):
ATCGGTATGCTCTCATGAGTAAA
Found at i:67281582 original size:13 final size:13
Alignment explanation
Indices: 67281561--67281599 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
67281551 AACTCTCTGA
*
67281561 GTCGGGTCACACG
1 GTCGCGTCACACG
*
67281574 GTCGCGTCACACA
1 GTCGCGTCACACG
*
67281587 GTCGTGTCACACG
1 GTCGCGTCACACG
67281600 CCCGTGTGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.18
Consensus pattern (13 bp):
GTCGCGTCACACG
Found at i:67281660 original size:12 final size:12
Alignment explanation
Indices: 67281643--67281672 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
67281633 CCCCACACGC
67281643 CCATGTGCCAGG
1 CCATGTGCCAGG
*
67281655 CCATGTGCTAGG
1 CCATGTGCCAGG
67281667 CCATGT
1 CCATGT
67281673 AACTGCCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (12 bp):
CCATGTGCCAGG
Found at i:67283783 original size:112 final size:113
Alignment explanation
Indices: 67283605--67283830 Score: 427
Period size: 112 Copynumber: 2.0 Consensus size: 113
67283595 GAGAAGATGA
* *
67283605 TACATCTTTTTCTCTACTTTAATTTTAAGTATATTTATTAATTTACTATTTTAACCTTAGATTTT
1 TACATCTTTTTCTCCACTTTAATTTTAAGTATATTTATTAATTTACTATCTTAACCTTAGATTTT
67283670 AACTTAAAAATCATTTAAATTTGTGTCCATAAAAGTCCACTAACATAT
66 AACTTAAAAATCATTTAAATTTGTGTCCATAAAAGTCCACTAACATAT
67283718 TACATC-TTTTCTCCACTTTAATTTTAAGTATATTTATTAATTTACTATCTTAACCTTAGATTTT
1 TACATCTTTTTCTCCACTTTAATTTTAAGTATATTTATTAATTTACTATCTTAACCTTAGATTTT
67283782 AACTTAAAAATCATTTAAATTTGTGTCCATAAAAGTCCACTAACATAT
66 AACTTAAAAATCATTTAAATTTGTGTCCATAAAAGTCCACTAACATAT
67283830 T
1 T
67283831 GAATGGTCTA
Statistics
Matches: 111, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
112 105 0.95
113 6 0.05
ACGTcount: A:0.35, C:0.15, G:0.04, T:0.46
Consensus pattern (113 bp):
TACATCTTTTTCTCCACTTTAATTTTAAGTATATTTATTAATTTACTATCTTAACCTTAGATTTT
AACTTAAAAATCATTTAAATTTGTGTCCATAAAAGTCCACTAACATAT
Found at i:67287939 original size:27 final size:27
Alignment explanation
Indices: 67287901--67287953 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
67287891 CGACGATGAG
67287901 TATGACTTTCCCATAAGCCTTTTTTCA
1 TATGACTTTCCCATAAGCCTTTTTTCA
*
67287928 TATGACTTTCCCATAATCCTTTTTTC
1 TATGACTTTCCCATAAGCCTTTTTTC
67287954 CGTGTCACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.21, C:0.26, G:0.06, T:0.47
Consensus pattern (27 bp):
TATGACTTTCCCATAAGCCTTTTTTCA
Found at i:67289013 original size:21 final size:21
Alignment explanation
Indices: 67288971--67289013 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
67288961 TATAATCAGA
* **
67288971 ACATTAAAACATACATTTCAT
1 ACATTAAAACAAACATAACAT
*
67288992 ACATTAATACAAACATAACAT
1 ACATTAAAACAAACATAACAT
67289013 A
1 A
67289014 AATCATTCGT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.53, C:0.19, G:0.00, T:0.28
Consensus pattern (21 bp):
ACATTAAAACAAACATAACAT
Found at i:67290084 original size:39 final size:35
Alignment explanation
Indices: 67290000--67290070 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
67289990 TTTGACGAGC
67290000 TTCCAATTATATATAAAACATAAGAAAGAAAACTA
1 TTCCAATTATATATAAAACATAAGAAAGAAAACTA
*
67290035 TTCCAATTATATATAAAACATAGGAAAGAAAACTA
1 TTCCAATTATATATAAAACATAAGAAAGAAAACTA
67290070 T
1 T
67290071 GTGAGCACAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.55, C:0.11, G:0.07, T:0.27
Consensus pattern (35 bp):
TTCCAATTATATATAAAACATAAGAAAGAAAACTA
Found at i:67293257 original size:23 final size:23
Alignment explanation
Indices: 67293225--67293268 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
67293215 TTTACCATTT
67293225 TCTAAATAAAATAATAATAAATA
1 TCTAAATAAAATAATAATAAATA
* *
67293248 TCTAAGTAAAATATTAATAAA
1 TCTAAATAAAATAATAATAAA
67293269 ATAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (23 bp):
TCTAAATAAAATAATAATAAATA
Found at i:67293261 original size:13 final size:11
Alignment explanation
Indices: 67293229--67293271 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
67293219 CCATTTTCTA
*
67293229 AATAAAATAAT
1 AATAAAATATT
67293240 AAT-AAATATCT
1 AATAAAATAT-T
67293251 AAGTAAAATATT
1 AA-TAAAATATT
67293263 AATAAAATA
1 AATAAAATA
67293272 ATATTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 4 0.14
13 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATATT
Found at i:67294976 original size:13 final size:13
Alignment explanation
Indices: 67294958--67294982 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67294948 ATGCATGCAC
67294958 ACTCCTTTAAAAT
1 ACTCCTTTAAAAT
67294971 ACTCCTTTAAAA
1 ACTCCTTTAAAA
67294983 GTTTTAAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (13 bp):
ACTCCTTTAAAAT
Found at i:67296387 original size:22 final size:22
Alignment explanation
Indices: 67296340--67296404 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 22
67296330 ATATAGTTTG
* * **
67296340 CATAATCAACAAATAGGGTTTG
1 CATAAACAACATATAGGGTTCA
* * *
67296362 CATATACTACATGTAGGGTTCA
1 CATAAACAACATATAGGGTTCA
67296384 CATAAACAACATATAGGGTTC
1 CATAAACAACATATAGGGTTC
67296405 GTATATTTGA
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (22 bp):
CATAAACAACATATAGGGTTCA
Found at i:67300092 original size:16 final size:16
Alignment explanation
Indices: 67300073--67300136 Score: 71
Period size: 15 Copynumber: 4.2 Consensus size: 16
67300063 ATAATAGAGA
67300073 AATTTAATAAATATTT
1 AATTTAATAAATATTT
* *
67300089 AATTTAATAAAAAATT
1 AATTTAATAAATATTT
*
67300105 AA-TTAATTAAT-TTT
1 AATTTAATAAATATTT
*
67300119 AGTTTAA-AAATATTT
1 AATTTAATAAATATTT
67300134 AAT
1 AAT
67300137 ATTAGTTGTA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
14 6 0.16
15 16 0.42
16 16 0.42
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (16 bp):
AATTTAATAAATATTT
Found at i:67300843 original size:20 final size:21
Alignment explanation
Indices: 67300802--67300844 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
67300792 ATATGACCCA
* *
67300802 TTTAATTACTCTTTTGAAATT
1 TTTAATTACTCTCTTCAAATT
67300823 TTTAATTACT-TCTTCAAATT
1 TTTAATTACTCTCTTCAAATT
67300843 TT
1 TT
67300845 ACGGTGATGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.28, C:0.12, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTAATTACTCTCTTCAAATT
Found at i:67305675 original size:25 final size:25
Alignment explanation
Indices: 67305642--67305691 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
67305632 TGTATATTTA
*
67305642 AATACATTAATT-TGATTTTTAAAAT
1 AATACATTAATTAT-ATTTTAAAAAT
*
67305667 AATATATTAATTATATTTTAAAAAT
1 AATACATTAATTATATTTTAAAAAT
67305692 TTTTAAGAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (25 bp):
AATACATTAATTATATTTTAAAAAT
Found at i:67312625 original size:40 final size:41
Alignment explanation
Indices: 67312562--67312763 Score: 272
Period size: 40 Copynumber: 5.0 Consensus size: 41
67312552 CAGGATTTAA
* *
67312562 CCGGATA-TAGCT-ACTCGCTCAAATGCCTTTGGGACTTAGC
1 CCGGATATTAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
** * *
67312602 CCGGATA-TAGTAGTTCGTACAAATGCCTTCGGGATTTAGC
1 CCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
67312642 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
67312682 CC-GAAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67312722 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
67312762 CC
1 CC
67312764 CGTTATCATC
Statistics
Matches: 146, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 4 0.03
40 140 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (41 bp):
CCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:67325310 original size:25 final size:25
Alignment explanation
Indices: 67325276--67325332 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
67325266 AAATATGAGA
67325276 TTTGACTATGCAAACGTGACTATTC
1 TTTGACTATGCAAACGTGACTATTC
*
67325301 TTTGACTATGCAAATGTGACTATTC
1 TTTGACTATGCAAACGTGACTATTC
*
67325326 TATGACT
1 TTTGACT
67325333 TGTGTCCAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (25 bp):
TTTGACTATGCAAACGTGACTATTC
Found at i:67330698 original size:19 final size:19
Alignment explanation
Indices: 67330660--67330700 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
67330650 AAATCCGTCC
*
67330660 ATTTTAAGAAAACCCCTTT
1 ATTTTAAGAAAACCCATTT
67330679 ATTTTAGAGAAAA-CCATTT
1 ATTTTA-AGAAAACCCATTT
67330698 ATT
1 ATT
67330701 CGTTGAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (19 bp):
ATTTTAAGAAAACCCATTT
Found at i:67339522 original size:25 final size:26
Alignment explanation
Indices: 67339490--67339544 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
67339480 TTATTAAATT
*
67339490 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
67339515 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
67339540 A-ATAT
1 ATATAT
67339545 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:67339731 original size:44 final size:45
Alignment explanation
Indices: 67339682--67339776 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 45
67339672 TTACACCTCT
* *
67339682 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
* ** *
67339726 ATTACATTCAACCAAATAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
67339771 ATTACA
1 ATTACA
67339777 CCTCTAATCC
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 17 0.39
45 27 0.61
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:67339776 original size:16 final size:16
Alignment explanation
Indices: 67339757--67339808 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
67339747 GATTTGCTAT
* *
67339757 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
67339773 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
67339789 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
67339805 TACA
1 TACA
67339809 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:67354689 original size:32 final size:33
Alignment explanation
Indices: 67354649--67354721 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 33
67354639 CAATTTTTAT
*
67354649 AAAATATTTT-CAGAAAATC-TGCAAAACAACAG
1 AAAATATTTTACACAAAATCATGC-AAACAACAG
* * *
67354681 AAAATATTTTACACAAATTCATTCAAACACCAG
1 AAAATATTTTACACAAAATCATGCAAACAACAG
67354714 AAAATATT
1 AAAATATT
67354722 AGCTTTTCCA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
32 10 0.29
33 23 0.66
34 2 0.06
ACGTcount: A:0.52, C:0.16, G:0.05, T:0.26
Consensus pattern (33 bp):
AAAATATTTTACACAAAATCATGCAAACAACAG
Found at i:67360136 original size:20 final size:20
Alignment explanation
Indices: 67360111--67360151 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
67360101 TCACATGTTG
*
67360111 TGTGTTTGAAAACCGTAACT
1 TGTGTTGGAAAACCGTAACT
*
67360131 TGTGTTGGAAAACTGTAACT
1 TGTGTTGGAAAACCGTAACT
67360151 T
1 T
67360152 TGCTTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (20 bp):
TGTGTTGGAAAACCGTAACT
Found at i:67367984 original size:14 final size:14
Alignment explanation
Indices: 67367967--67367994 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
67367957 GTCTATAATG
67367967 CCACTAAGTCAATA
1 CCACTAAGTCAATA
67367981 CCACTAAGTCAATA
1 CCACTAAGTCAATA
67367995 AATAAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.29, G:0.07, T:0.21
Consensus pattern (14 bp):
CCACTAAGTCAATA
Found at i:67370036 original size:43 final size:42
Alignment explanation
Indices: 67369849--67370040 Score: 183
Period size: 43 Copynumber: 4.5 Consensus size: 42
67369839 GGTTATCGAG
* *
67369849 ATGTGATTACATGTAAGACCCTGTGTGGGATAGTGGCATTGT
1 ATGTGATTACATGTAAGACCCTGTGTGGGACAGTGGCATCGT
* * *
67369891 ATTGTGATTACATGTAAGACCCTGTATGGGACAGTGACATTGT
1 A-TGTGATTACATGTAAGACCCTGTGTGGGACAGTGGCATCGT
** *
67369934 ATTGTGATTATGTGTAAGACCATGTGTGGGACA-TCGGCATCGTT
1 A-TGTGATTACATGTAAGACCCTGTGTGGGACAGT-GGCATCG-T
* * *
67369978 AAT-CGACTT-CGTGTAAGACCCTGTGTAGGACAGTGGCATCGAT
1 -ATGTGA-TTACATGTAAGACCCTGTGTGGGACAGTGGCATCG-T
* *
67370021 ATATGATAACATGTAAGACC
1 ATGTGATTACATGTAAGACC
67370041 ATATCTAGGA
Statistics
Matches: 125, Mismatches: 17, Indels: 15
0.80 0.11 0.10
Matches are distributed among these distances:
42 5 0.04
43 114 0.91
44 5 0.04
45 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCCTGTGTGGGACAGTGGCATCGT
Found at i:67376462 original size:43 final size:43
Alignment explanation
Indices: 67376399--67376589 Score: 183
Period size: 43 Copynumber: 4.4 Consensus size: 43
67376389 GTTATCGAGA
*
67376399 TGTGATTACATGTAAGACCCTGTGTGGGACAGTGGCATTGTAT
1 TGTGATTACATGTAAGACCCTGTGTGGGACAATGGCATTGTAT
* **
67376442 TGTGATTACATGTAAAACCCTAAGTGGGACAATGGCATTGTAT
1 TGTGATTACATGTAAGACCCTGTGTGGGACAATGGCATTGTAT
* * * * *
67376485 TGTGATTACGTGTAAGACCATGTGTGGGAC-ATCGACATCGTTAA
1 TGTGATTACATGTAAGACCCTGTGTGGGACAAT-GGCATTG-TAT
* ** * *
67376529 T-CGACTT-TGTGTAAGACCCTGTGTGGGACAGTGGCATCG-AT
1 TGTGA-TTACATGTAAGACCCTGTGTGGGACAATGGCATTGTAT
*
67376570 ATGTGATAACATGTAAGACC
1 -TGTGATTACATGTAAGACC
67376590 ATATCTTGGA
Statistics
Matches: 119, Mismatches: 22, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
41 1 0.01
42 4 0.03
43 108 0.91
44 6 0.05
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCCTGTGTGGGACAATGGCATTGTAT
Found at i:67379788 original size:40 final size:41
Alignment explanation
Indices: 67379733--67379941 Score: 221
Period size: 41 Copynumber: 5.1 Consensus size: 41
67379723 GCAAAAATTG
* * *
67379733 TAAAACACATAGCAATAGCGGCG-TTTTACCAAAAACGCCAC
1 TAAAA-ACAGAGCAATAGCGGCGCTTTTAGCAAAAACGCCGC
*
67379774 TAAAAACAGAGCAATAGCGGCG-TTTTAGTAAAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGCTTTTAG-CAAAAACGCCGC
* * * * *
67379815 TAAAAACTGAGCATTAGCAGCGCTTTTTGC-AAAACTCCGC
1 TAAAAACAGAGCAATAGCGGCGCTTTTAGCAAAAACGCCGC
* *
67379855 TAAAAACCAGAGCATTAGCGGCGCTTTT-GGAAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTAGCAAAAACGCCGC
* * *
67379896 TAAAAACTAGAGCACTAGCGGCGCTTTT-GGAAAAATGCCGC
1 TAAAAAC-AGAGCAATAGCGGCGCTTTTAGCAAAAACGCCGC
67379937 TAAAA
1 TAAAA
67379942 GTCATATAAC
Statistics
Matches: 147, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
40 38 0.26
41 104 0.71
42 5 0.03
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (41 bp):
TAAAAACAGAGCAATAGCGGCGCTTTTAGCAAAAACGCCGC
Found at i:67379858 original size:81 final size:81
Alignment explanation
Indices: 67379764--67379941 Score: 227
Period size: 81 Copynumber: 2.2 Consensus size: 81
67379754 CGTTTTACCA
* *
67379764 AAAACGCCACTAAAAA-CAGAGCAATAGCGGCG-TTTTAGTAAAAAACGCCGCTAAAAACT-GAG
1 AAAACTCCGCTAAAAACCAGAGCAATAGCGGCGCTTTT-G-AAAAAACGCCGCTAAAAACTAGAG
*
67379826 CATTAGCAGCGCTTTTTGC
64 CACTAGCAGCGC-TTTTGC
* *
67379845 AAAACTCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAAACTAGAGCA
1 AAAACTCCGCTAAAAACCAGAGCAATAGCGGCGCTTTTGAAAAAACGCCGCTAAAAACTAGAGCA
* *
67379910 CTAGCGGCGCTTTTGG
66 CTAGCAGCGCTTTTGC
*
67379926 AAAAATGCCGCTAAAA
1 AAAACT-CCGCTAAAA
67379942 GTCATATAAC
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
81 43 0.51
82 38 0.45
83 4 0.05
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.19
Consensus pattern (81 bp):
AAAACTCCGCTAAAAACCAGAGCAATAGCGGCGCTTTTGAAAAAACGCCGCTAAAAACTAGAGCA
CTAGCAGCGCTTTTGC
Found at i:67380113 original size:7 final size:7
Alignment explanation
Indices: 67380098--67380151 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
67380088 TTAATTATCA
*
67380098 TTATAGT
1 TTATGGT
67380105 TTATGGT
1 TTATGGT
67380112 TTATGGT
1 TTATGGT
* *
67380119 TTAAGAT
1 TTATGGT
*
67380126 ATATGGT
1 TTATGGT
*
67380133 TTAGGGT
1 TTATGGT
*
67380140 TTAAGGT
1 TTATGGT
67380147 TTATG
1 TTATG
67380152 AGTTAACTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (7 bp):
TTATGGT
Found at i:67380130 original size:21 final size:21
Alignment explanation
Indices: 67380106--67380190 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
67380096 CATTATAGTT
*
67380106 TATGGTTTATGGTTTAAGATA
1 TATGGTTTAGGGTTTAAGATA
* *
67380127 TATGGTTTAGGGTTTAAGGTT
1 TATGGTTTAGGGTTTAAGATA
**
67380148 TATGAGTTAACTATAGTTTAAGATA
1 TATG-GTT---TAGGGTTTAAGATA
67380173 TATGGTTTAGGGTTTAAG
1 TATGGTTTAGGGTTTAAG
67380191 GTTTAGGAGT
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
21 31 0.61
22 3 0.06
24 3 0.06
25 14 0.27
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.45
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAGATA
Found at i:67380169 original size:46 final size:46
Alignment explanation
Indices: 67380117--67380206 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
67380107 ATGGTTTATG
*
67380117 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATA
1 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTATA
67380163 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTA
1 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTA
67380207 GTATTTGAAG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.30, C:0.02, G:0.26, T:0.42
Consensus pattern (46 bp):
GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTATA
Found at i:67380262 original size:7 final size:7
Alignment explanation
Indices: 67380233--67380360 Score: 55
Period size: 7 Copynumber: 18.1 Consensus size: 7
67380223 GATGAATTAT
67380233 GGGTTTA
1 GGGTTTA
*
67380240 GGGATTA
1 GGGTTTA
* *
67380247 TGATTTA
1 GGGTTTA
67380254 GGGTTTA
1 GGGTTTA
*
67380261 GGGGTTA
1 GGGTTTA
67380268 GGG-TT-
1 GGGTTTA
67380273 GGAGTTTA
1 GG-GTTTA
* *
67380281 AGGTGTA
1 GGGTTTA
** *
67380288 AAGTTTG
1 GGGTTTA
*
67380295 GGGTTAA
1 GGGTTTA
*
67380302 GGGTTAA
1 GGGTTTA
67380309 GGGTTTA
1 GGGTTTA
*
67380316 GAGTTTA
1 GGGTTTA
**
67380323 ATGTTTA
1 GGGTTTA
*
67380330 TGGG-ATA
1 -GGGTTTA
*
67380337 GGGGTTAA
1 -GGGTTTA
67380345 GAGGTTTA
1 G-GGTTTA
67380353 GGGTTTA
1 GGGTTTA
67380360 G
1 G
67380361 ATTAATTAGT
Statistics
Matches: 88, Mismatches: 27, Indels: 12
0.69 0.21 0.09
Matches are distributed among these distances:
5 2 0.02
6 3 0.03
7 74 0.84
8 9 0.10
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.38
Consensus pattern (7 bp):
GGGTTTA
Found at i:67381233 original size:41 final size:41
Alignment explanation
Indices: 67381155--67381234 Score: 97
Period size: 41 Copynumber: 2.0 Consensus size: 41
67381145 CTTAACAAAC
* **
67381155 TAAGCTATAATAGCGTTTATATTAAAAATGCTGCAAAAAAT
1 TAAGCTATAATAGCGTTTATATTAAAAACGCCACAAAAAAT
* * * *
67381196 TAAGCTATACTGGCGTTTTTTTTAAAAACGCCACAAAAA
1 TAAGCTATAATAGCGTTTATATTAAAAACGCCACAAAAA
67381235 GCCATTATTT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.31
Consensus pattern (41 bp):
TAAGCTATAATAGCGTTTATATTAAAAACGCCACAAAAAAT
Found at i:67382793 original size:12 final size:12
Alignment explanation
Indices: 67382776--67382825 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
67382766 AGTTGCTGGA
67382776 AATTGAGATGTT
1 AATTGAGATGTT
*
67382788 AATTGAGGTGTAT
1 AATTGAGATGT-T
* *
67382801 AAAT--GTTGTT
1 AATTGAGATGTT
67382811 AATTGAGATGTT
1 AATTGAGATGTT
67382823 AAT
1 AAT
67382826 ATGTGTGTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
10 4 0.13
11 4 0.13
12 18 0.60
13 4 0.13
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.42
Consensus pattern (12 bp):
AATTGAGATGTT
Found at i:67382829 original size:23 final size:23
Alignment explanation
Indices: 67382784--67382829 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
67382774 GAAATTGAGA
*
67382784 TGTTAATTGAGGTGTATAAATGT
1 TGTTAATTGAGATGTATAAATGT
67382807 TGTTAATTGAGATGT-TAATATGT
1 TGTTAATTGAGATGTATAA-ATGT
67382830 GTGTGTGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46
Consensus pattern (23 bp):
TGTTAATTGAGATGTATAAATGT
Found at i:67382834 original size:2 final size:2
Alignment explanation
Indices: 67382827--67382861 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
67382817 GATGTTAATA
67382827 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
67382862 CCCTTCTGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:67383240 original size:23 final size:23
Alignment explanation
Indices: 67383221--67383760 Score: 433
Period size: 23 Copynumber: 23.4 Consensus size: 23
67383211 AAATGTTGTT
* *
67383221 AATTG-AGATGTTAAAGTGTTGCA
1 AATTGAAG-TGTTAAAGTGCTGTA
67383244 AATTGAAGTGTTTAAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGTA
* *
67383267 AATTGAACTGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGTA
* *
67383290 AATTGAAATGTTAGAGTGCTGTA
1 AATTGAAGTGTTAAAGTGCTGTA
* * * *
67383313 AATTGGAGTGTTTAAGTACTGCA
1 AATTGAAGTGTTAAAGTGCTGTA
* *
67383336 AATTGAAGTGTT-TAGTTGCTGGA
1 AATTGAAGTGTTAAAG-TGCTGTA
* *
67383359 AATTG-AGATGTTTAAA-TGTTGTT
1 AATTGAAG-TG-TTAAAGTGCTGTA
* *
67383382 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGTA
*
67383405 AATTGAAGTGTTTTAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGTA
* *
67383428 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGTA
* *
67383451 AATTGAAGTGTTTAAA-TGTTGTT
1 AATTGAAGTG-TTAAAGTGCTGTA
* *
67383474 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGTA
*
67383497 AATTGAAGTGTTTGAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGTA
* *
67383520 AATTGAAGTGCTTAAA-TGTTGCA
1 AATTGAAGTG-TTAAAGTGCTGTA
** *
67383543 AATTGAAGTGCTATAAA-TATTGTT
1 AATTGAAGTG-T-TAAAGTGCTGTA
* *
67383567 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGTA
* *
67383590 AATTGAAGTGTTTAAA-TGTTGTT
1 AATTGAAGTG-TTAAAGTGCTGTA
* *
67383613 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGTA
*
67383636 AATTGAAGTGTTTGAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGTA
* *
67383659 AATTGAAGTGCTTAAA-TGTTGCA
1 AATTGAAGTG-TTAAAGTGCTGTA
* ** *
67383682 AATTGAAGTGTTATAAATATTGTT
1 AATTGAAGTGTTA-AAGTGCTGTA
* *
67383706 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGTA
*
67383729 AATTGAAGTGTTTGAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGTA
67383752 AATTGAAGT
1 AATTGAAGT
67383761 TGTGGATTAT
Statistics
Matches: 414, Mismatches: 81, Indels: 44
0.77 0.15 0.08
Matches are distributed among these distances:
22 35 0.08
23 309 0.75
24 69 0.17
25 1 0.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (23 bp):
AATTGAAGTGTTAAAGTGCTGTA
Found at i:67383279 original size:46 final size:46
Alignment explanation
Indices: 67383231--67383758 Score: 609
Period size: 46 Copynumber: 11.4 Consensus size: 46
67383221 AATTGAGATG
* * * *
67383231 TTAAAGTGTTGCAAATTGAAGTGTTTAAA-TGCTGTAAATTGAACTG-
1 TTAAA-TGTTGTAAATTGAAATG-TTAAAGTGCTGCAAATTGAAGTGT
* * * * *
67383277 TTAAAGTGCTGCAAATTGAAATGTTAGAGTGCTGTAAATTGGAGTGT
1 TTAAA-TGTTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
* ** * * * *
67383324 TTAAGTACTGCAAATTGAAGTGTT-TAGTTGCTGGAAATTG-AGATGT
1 TTAAATGTTGTAAATTGAAATGTTAAAG-TGCTGCAAATTGAAG-TGT
*
67383370 TTAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
1 TTAAATGTTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
* *
67383416 TTTAATGCTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
1 TTAAATGTTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
*
67383462 TTAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
1 TTAAATGTTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
* * * *
67383508 TTGAATGCTGTAAATTGAAGTGCTTAAA-TGTTGCAAATTGAAGTGCT
1 TTAAATGTTGTAAATTGAAATG-TTAAAGTGCTGCAAATTGAAGTG-T
* * *
67383555 ATAAATATTGTTAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
1 TTAAATGTTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
*
67383601 TTAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
1 TTAAATGTTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
* * * *
67383647 TTGAATGCTGTAAATTGAAGTGCTTAAA-TGTTGCAAATTGAAGTGT
1 TTAAATGTTGTAAATTGAAATG-TTAAAGTGCTGCAAATTGAAGTGT
* *
67383693 TATAAATATTGTTAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
1 T-TAAATGTTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
* *
67383740 TTGAATGCTGTAAATTGAA
1 TTAAATGTTGTAAATTGAA
67383759 GTTGTGGATT
Statistics
Matches: 417, Mismatches: 53, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
45 8 0.02
46 324 0.78
47 85 0.20
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (46 bp):
TTAAATGTTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
Found at i:67383606 original size:139 final size:138
Alignment explanation
Indices: 67383243--67383758 Score: 662
Period size: 139 Copynumber: 3.7 Consensus size: 138
67383233 AAAGTGTTGC
* * * * ** ** *
67383243 AAATTGAAGTGTTTAAATGCTGTAAATTGAACTGT-TAAAGTGCTGCAAATTGAAATGTTAGAGT
1 AAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTATAAA-TATTGTTAATTGAAATGTTAAAGT
* * * * * * * *
67383307 GCTGTAAATTGGAGTGTTTAAGTACTGCAAATTGAAGTGTT-TAGTTGCTGGAAATTG-AGATGT
65 GCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAATGTTAAAG-TGCTGCAAATTGAAG-TGT
* *
67383370 TTAAATGTTGT
128 TTGAATGCTGT
* * * * * ** *
67383381 TAATTGAAATG-TTAAAGTGCTGCAAATTGAAGTGTTTTAATGCTGTAAATTGAAATGTTAAAGT
1 AAATTGAAGTGCTTAAA-TGTTGCAAATTGAAGTGTATAAATATTGTTAATTGAAATGTTAAAGT
* *
67383445 GCTGCAAATTGAAGTGTTTAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGTTT
65 GCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGTTT
67383510 GAATGCTGT
130 GAATGCTGT
67383519 AAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGCTATAAATATTGTTAATTGAAATGTTAAAGT
1 AAATTGAAGTGCTTAAATGTTGCAAATTGAAGTG-TATAAATATTGTTAATTGAAATGTTAAAGT
* *
67383584 GCTGCAAATTGAAGTGTTTAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGTTT
65 GCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGTTT
67383649 GAATGCTGT
130 GAATGCTGT
67383658 AAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTATAAATATTGTTAATTGAAATGTTAAAGT
1 AAATTGAAGTGCTTAAATGTTGCAAATTGAAGTG-TATAAATATTGTTAATTGAAATGTTAAAGT
*
67383723 GCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAA
65 GCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAA
67383759 GTTGTGGATT
Statistics
Matches: 341, Mismatches: 31, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
137 5 0.01
138 128 0.38
139 208 0.61
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.37
Consensus pattern (138 bp):
AAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTATAAATATTGTTAATTGAAATGTTAAAGTG
CTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGTTTG
AATGCTGT
Found at i:67385665 original size:19 final size:19
Alignment explanation
Indices: 67385642--67385688 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
67385632 ATTTAATCTA
*
67385642 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
67385660 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
67385680 ATTTTTATT
1 ATTTTTATT
67385689 TTAATTTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:67386199 original size:18 final size:18
Alignment explanation
Indices: 67386172--67386210 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
67386162 GAATAAAATT
*
67386172 ATTAAAATTATGAGTTTA
1 ATTAAAATTATGAATTTA
* *
67386190 ATTAATATTATTAATTTA
1 ATTAAAATTATGAATTTA
67386208 ATT
1 ATT
67386211 TATTTATTGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (18 bp):
ATTAAAATTATGAATTTA
Found at i:67389998 original size:31 final size:30
Alignment explanation
Indices: 67389950--67390007 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
67389940 TAGAATTCAA
67389950 ATTTATTATATTATTTTAAAATATTTATGT
1 ATTTATTATATTATTTTAAAATATTTATGT
*
67389980 ATTT-TTATATATATTTTTAAAATTTTTA
1 ATTTATTATAT-TA-TTTTAAAATATTTA
67390008 GAATATGTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 6 0.24
30 6 0.24
31 13 0.52
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (30 bp):
ATTTATTATATTATTTTAAAATATTTATGT
Found at i:67393000 original size:39 final size:39
Alignment explanation
Indices: 67392946--67393126 Score: 265
Period size: 39 Copynumber: 4.6 Consensus size: 39
67392936 CAGTGATGTT
*
67392946 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
67392985 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
67393024 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* ** *
67393063 TAACCGGACTTAAGGTCCGCAGGCTACATGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
67393102 TGTCCGGGC-TAAAGTCTCGCAGGCT
1 TATCCGGACTTAAGGTC-CGCAGGCT
67393127 TCAAGCTGGT
Statistics
Matches: 132, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
38 6 0.05
39 126 0.95
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:67400826 original size:39 final size:39
Alignment explanation
Indices: 67400767--67400947 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
67400757 CAATGATGTT
*
67400767 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
67400806 TATCAGGACTTAGGGTCCGCAAGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
67400845 TATCCGGACTTAAGGTCCGCAGGATATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
67400884 TAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
67400923 TGTCCGGGC-TAAAGTCCCGCAGGCT
1 TATCCGGACTTAAGGT-CCGCAGGCT
67400948 TCAAGCTGGT
Statistics
Matches: 127, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
38 5 0.04
39 122 0.96
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Done.