Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 203 of 344
Found at i:67670051 original size:40 final size:40
Alignment explanation
Indices: 67669996--67670177 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
67669986 TATTCGAATG
67669996 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
67670036 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
67670076 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
67670116 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
67670156 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
67670178 TACTTGGGTT
Statistics
Matches: 132, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 14 0.11
40 115 0.87
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:67679445 original size:40 final size:39
Alignment explanation
Indices: 67679365--67679450 Score: 100
Period size: 40 Copynumber: 2.2 Consensus size: 39
67679355 TAATGATTTA
** *
67679365 TCGGCTAAAATGACACTTAGTGTGCGGTTCGAAATGGCT
1 TCGGCTAAAATGACACTTAGTGTGCAATTCGAAATAGCT
* * * *
67679404 TCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCTAAAA-TGACACTTAGTGTGCAATTCGAAATAGCT
67679444 TCGGCTA
1 TCGGCTA
67679451 TATATATAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 10 0.26
40 29 0.74
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (39 bp):
TCGGCTAAAATGACACTTAGTGTGCAATTCGAAATAGCT
Found at i:67680451 original size:26 final size:26
Alignment explanation
Indices: 67680422--67680473 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
67680412 ATTATTTTCA
67680422 TATGAACTTAATAAGAATTATAGCTT
1 TATGAACTTAATAAGAATTATAGCTT
*
67680448 TATGAACTTAATAAGCATTATAGCTT
1 TATGAACTTAATAAGAATTATAGCTT
67680474 ACTCCCCTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (26 bp):
TATGAACTTAATAAGAATTATAGCTT
Found at i:67689365 original size:34 final size:34
Alignment explanation
Indices: 67689322--67689394 Score: 121
Period size: 34 Copynumber: 2.1 Consensus size: 34
67689312 GTATGCATCT
67689322 CTGATACTG-TACTGAAATGGGGCTAAGGCCCACA
1 CTGATACTGTTACTGAAAT-GGGCTAAGGCCCACA
*
67689356 CTGATACTGTTACTGTAATGGGCTAAGGCCCACA
1 CTGATACTGTTACTGAAATGGGCTAAGGCCCACA
67689390 CTGAT
1 CTGAT
67689395 CTTGCCACTG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
34 29 0.78
35 8 0.22
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (34 bp):
CTGATACTGTTACTGAAATGGGCTAAGGCCCACA
Found at i:67689413 original size:34 final size:34
Alignment explanation
Indices: 67689322--67689419 Score: 103
Period size: 34 Copynumber: 2.9 Consensus size: 34
67689312 GTATGCATCT
* *
67689322 CTGATACTG-TACTGAAATGGGGCTAAGGCCCACA
1 CTGATACTGCCACTGTAAT-GGGCTAAGGCCCACA
**
67689356 CTGATACTGTTACTGTAATGGGCTAAGGCCCACA
1 CTGATACTGCCACTGTAATGGGCTAAGGCCCACA
*
67689390 CTGAT-CTTGCCACTGATAA-GGGCTTAGGCC
1 CTGATAC-TGCCACTG-TAATGGGCTAAGGCC
67689420 AGACTGTTTT
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
33 1 0.02
34 45 0.79
35 11 0.19
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (34 bp):
CTGATACTGCCACTGTAATGGGCTAAGGCCCACA
Found at i:67691128 original size:39 final size:39
Alignment explanation
Indices: 67691083--67691259 Score: 309
Period size: 39 Copynumber: 4.5 Consensus size: 39
67691073 AACATGTTTT
67691083 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
67691122 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
*
67691161 TGAGTATTGTGATATATGCTTGAATGTTATATGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
*
67691200 TGAGTATTGTGATATATGCTTGACTGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* * *
67691239 TGTGTAATGTGATACATGCTT
1 TGAGTATTGTGATATATGCTT
67691260 AAAAGTGAAT
Statistics
Matches: 132, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 132 1.00
ACGTcount: A:0.28, C:0.04, G:0.23, T:0.46
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
Found at i:67691134 original size:17 final size:17
Alignment explanation
Indices: 67691112--67691178 Score: 57
Period size: 17 Copynumber: 3.7 Consensus size: 17
67691102 TTGAATGTTA
67691112 TGTGATTATATGAGTAT
1 TGTGATTATATGAGTAT
*
67691129 TGTGATATATGCTTGAATGT-T
1 TGTGAT-TAT--ATG-A-GTAT
67691150 ATGTGATTATATGAGTAT
1 -TGTGATTATATGAGTAT
67691168 TGTGA-TATATG
1 TGTGATTATATG
67691179 CTTGAATGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 15
0.71 0.03 0.26
Matches are distributed among these distances:
16 6 0.15
17 13 0.32
18 5 0.12
19 2 0.05
20 2 0.05
21 5 0.12
22 8 0.20
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.46
Consensus pattern (17 bp):
TGTGATTATATGAGTAT
Found at i:67697634 original size:28 final size:26
Alignment explanation
Indices: 67697607--67697658 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 26
67697597 AAATTCAAAT
67697607 ATAGAAAA-AAATAAAAGATAAATAAA
1 ATAGAAAAGAAATAAAAGA-AAATAAA
*
67697633 ATCGAAAAGGAAATAAAAGAAAATAA
1 ATAGAAAA-GAAATAAAAGAAAATAA
67697659 TTAATATACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 7 0.30
27 6 0.26
28 10 0.43
ACGTcount: A:0.73, C:0.02, G:0.12, T:0.13
Consensus pattern (26 bp):
ATAGAAAAGAAATAAAAGAAAATAAA
Found at i:67698079 original size:20 final size:18
Alignment explanation
Indices: 67698036--67698085 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 18
67698026 CATATTTAAT
*
67698036 TATTTATATTTAATAATA
1 TATTTATATTTAATAAAA
67698054 TAATTTATTATTCTAATAAAA
1 T-ATTTA-TATT-TAATAAAA
67698075 TATTTAATATT
1 TATTT-ATATT
67698086 AAATTTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 1 0.04
19 5 0.19
20 12 0.44
21 9 0.33
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (18 bp):
TATTTATATTTAATAAAA
Found at i:67698095 original size:30 final size:33
Alignment explanation
Indices: 67698041--67698102 Score: 85
Period size: 30 Copynumber: 2.0 Consensus size: 33
67698031 TTAATTATTT
*
67698041 ATATTTAATAATATAATTTATTATTCTAATAAA
1 ATATTTAATAATATAAATTATTATTCTAATAAA
*
67698074 ATATTTAAT-AT-TAAATT-TTATTTTAATAA
1 ATATTTAATAATATAAATTATTATTCTAATAA
67698103 TAAATTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 11 0.41
31 5 0.19
32 2 0.07
33 9 0.33
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (33 bp):
ATATTTAATAATATAAATTATTATTCTAATAAA
Found at i:67698104 original size:33 final size:33
Alignment explanation
Indices: 67698041--67698106 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
67698031 TTAATTATTT
*
67698041 ATATTTAATAATATAATTTATTATTCTAATAAA
1 ATATTTAATAATATAATTTATTATTATAATAAA
*
67698074 ATATTTAATATTA-AATTTTATT-TTAATAATAAA
1 ATATTTAATAATATAA-TTTATTATT-ATAATAAA
67698107 TTTTTACAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 4 0.14
33 25 0.86
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (33 bp):
ATATTTAATAATATAATTTATTATTATAATAAA
Found at i:67698271 original size:23 final size:25
Alignment explanation
Indices: 67698228--67698273 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
67698218 AATAAATGTT
67698228 TTATAGTAAATTATGAATATTTTAA
1 TTATAGTAAATTATGAATATTTTAA
*
67698253 TTATA-TAAA-TATGAGTATTTT
1 TTATAGTAAATTATGAATATTTT
67698274 TTAAAGTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 11 0.55
24 4 0.20
25 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (25 bp):
TTATAGTAAATTATGAATATTTTAA
Found at i:67723022 original size:69 final size:69
Alignment explanation
Indices: 67722911--67723049 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
67722901 CAAGACTCTA
*
67722911 TCAGCCCTACCACCACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
67722976 CCTG
66 CCTG
67722980 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
67723045 CCTG
66 CCTG
67723049 T
1 T
67723050 TTTTCCTATC
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.28, C:0.32, G:0.13, T:0.27
Consensus pattern (69 bp):
TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
CCTG
Found at i:67729927 original size:18 final size:18
Alignment explanation
Indices: 67729904--67729945 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
67729894 GCTTTGGTGC
*
67729904 AAGAGGAAGAGGCAGAGG
1 AAGAGGAACAGGCAGAGG
*
67729922 AAGAGGAACAGGTAGAGG
1 AAGAGGAACAGGCAGAGG
*
67729940 TAGAGG
1 AAGAGG
67729946 TGGATATAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.43, C:0.05, G:0.48, T:0.05
Consensus pattern (18 bp):
AAGAGGAACAGGCAGAGG
Found at i:67731441 original size:21 final size:23
Alignment explanation
Indices: 67731415--67731457 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
67731405 TGTACATTGA
67731415 ATTAATTT-T-ATTAAAAATTTC
1 ATTAATTTCTAATTAAAAATTTC
67731436 ATTAATTTCTACATTAAAAATT
1 ATTAATTTCTA-ATTAAAAATT
67731458 AGTCCCTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 1 0.05
24 10 0.53
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (23 bp):
ATTAATTTCTAATTAAAAATTTC
Found at i:67735143 original size:11 final size:13
Alignment explanation
Indices: 67735126--67735158 Score: 52
Period size: 11 Copynumber: 2.7 Consensus size: 13
67735116 TAAGATTAGT
67735126 GTTAATTAATT-A
1 GTTAATTAATTAA
67735138 -TTAATTAATTAA
1 GTTAATTAATTAA
67735150 GTTAATTAA
1 GTTAATTAA
67735159 GAGTTAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 10 0.53
12 1 0.05
13 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (13 bp):
GTTAATTAATTAA
Found at i:67735311 original size:51 final size:51
Alignment explanation
Indices: 67735246--67735350 Score: 183
Period size: 51 Copynumber: 2.1 Consensus size: 51
67735236 GGGTGGGTGA
* *
67735246 GAAAGAGGGTTTGAGCTTTTAAAGTTTTAGTCCTTCAATTAATCAAGACTT
1 GAAACAGGGTTTGAGCTTTTAAAGCTTTAGTCCTTCAATTAATCAAGACTT
*
67735297 GAAACAGGGTTTGAGCTTTTCAAGCTTTAGTCCTTCAATTAATCAAGACTT
1 GAAACAGGGTTTGAGCTTTTAAAGCTTTAGTCCTTCAATTAATCAAGACTT
67735348 GAA
1 GAA
67735351 TCAATTAGGA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.35
Consensus pattern (51 bp):
GAAACAGGGTTTGAGCTTTTAAAGCTTTAGTCCTTCAATTAATCAAGACTT
Found at i:67737220 original size:29 final size:29
Alignment explanation
Indices: 67737185--67737273 Score: 142
Period size: 29 Copynumber: 3.1 Consensus size: 29
67737175 TCGACAATCC
*
67737185 TCAAATATGAAAAGGGATGGTTTCGACCA
1 TCAAATATGAAAAGGGATGGTTACGACCA
* *
67737214 TCAAATATGAAAAGGGATAGTGACGACCA
1 TCAAATATGAAAAGGGATGGTTACGACCA
*
67737243 TCGAATATGAAAAGGGATGGTTACGACCA
1 TCAAATATGAAAAGGGATGGTTACGACCA
67737272 TC
1 TC
67737274 GTTTAGTACA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (29 bp):
TCAAATATGAAAAGGGATGGTTACGACCA
Found at i:67738282 original size:12 final size:12
Alignment explanation
Indices: 67738265--67738290 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67738255 GTTTGTTGAT
67738265 AAAACGCCGCTA
1 AAAACGCCGCTA
67738277 AAAACGCCGCTA
1 AAAACGCCGCTA
67738289 AA
1 AA
67738291 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:67740141 original size:21 final size:21
Alignment explanation
Indices: 67740115--67740162 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
67740105 CTAGCCACAA
* *
67740115 GCCCGTATGATTGAGGGACAC
1 GCCCGTATGACTGAAGGACAC
*
67740136 GCCCGTATGGCTGAAGGACAC
1 GCCCGTATGACTGAAGGACAC
67740157 GCCCGT
1 GCCCGT
67740163 TTGAGCAGGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.21, C:0.29, G:0.33, T:0.17
Consensus pattern (21 bp):
GCCCGTATGACTGAAGGACAC
Found at i:67740296 original size:21 final size:21
Alignment explanation
Indices: 67740217--67740296 Score: 74
Period size: 21 Copynumber: 3.8 Consensus size: 21
67740207 GACATGACCA
* *
67740217 TGTGGCCAAGACACACATCCG
1 TGTGGCCAAGACACACGTCTG
* * *
67740238 TCTGG-TAAGGACACAC-ACTCG
1 TGTGGCCAA-GACACACGTCT-G
*
67740259 TGTGGACAAGACACACGTCTG
1 TGTGGCCAAGACACACGTCTG
67740280 TGTGGCCAAGACACACG
1 TGTGGCCAAGACACACG
67740297 CCCATGTGTA
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
20 3 0.06
21 40 0.85
22 4 0.09
ACGTcount: A:0.29, C:0.29, G:0.26, T:0.16
Consensus pattern (21 bp):
TGTGGCCAAGACACACGTCTG
Found at i:67744643 original size:4 final size:4
Alignment explanation
Indices: 67744628--67744662 Score: 61
Period size: 4 Copynumber: 8.5 Consensus size: 4
67744618 AACAGGGGAA
67744628 AAAG AAAGG AAAG AAAG AAAG AAAG AAAG AAAG AA
1 AAAG AAA-G AAAG AAAG AAAG AAAG AAAG AAAG AA
67744663 GGGAAAATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 26 0.87
5 4 0.13
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:67748546 original size:25 final size:24
Alignment explanation
Indices: 67748504--67748550 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
67748494 AATTATATAA
*
67748504 TTAATTATTTAGATATAAATTATGT
1 TTAATTATTTAGAAAT-AATTATGT
67748529 TTAATTAATTTA-AAATAATTAT
1 TTAATT-ATTTAGAAATAATTAT
67748551 ATTATAAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 6 0.30
25 9 0.45
26 5 0.25
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (24 bp):
TTAATTATTTAGAAATAATTATGT
Found at i:67749991 original size:21 final size:21
Alignment explanation
Indices: 67749935--67749993 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
67749925 AGGCACTATA
*
67749935 TGTGTCATATCAGACACCTCG
1 TGTGTCATATCAGGCACCTCG
* *
67749956 TGTGTCGTATCAGGCACCTTG
1 TGTGTCATATCAGGCACCTCG
* *
67749977 TGTGTCATTTTAGGCAC
1 TGTGTCATATCAGGCAC
67749994 TTTATATGTC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.34
Consensus pattern (21 bp):
TGTGTCATATCAGGCACCTCG
Found at i:67750865 original size:22 final size:22
Alignment explanation
Indices: 67750815--67750865 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 22
67750805 TATTTAAAGG
67750815 TGAA-TTGGATTGGTTGTGATT
1 TGAATTTGGATTGGTTGTGATT
***
67750836 TTTGTTTGGATTGGTCT-TGATT
1 TGAATTTGGATTGGT-TGTGATT
67750858 TGAATTTG
1 TGAATTTG
67750866 TAGGGAAGCT
Statistics
Matches: 22, Mismatches: 6, Indels: 3
0.71 0.19 0.10
Matches are distributed among these distances:
21 1 0.05
22 20 0.91
23 1 0.05
ACGTcount: A:0.16, C:0.02, G:0.29, T:0.53
Consensus pattern (22 bp):
TGAATTTGGATTGGTTGTGATT
Found at i:67753363 original size:21 final size:21
Alignment explanation
Indices: 67753339--67753393 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
67753329 GATACGGCCA
*
67753339 TGTGGCAAAGACACAAACCCT
1 TGTGGCAAAGACACAAACCCG
* * **
67753360 TGTGGTAAGGACACATGCCCG
1 TGTGGCAAAGACACAAACCCG
*
67753381 TGTGGCCAAGACA
1 TGTGGCAAAGACA
67753394 GATGCTTATG
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.31, C:0.25, G:0.27, T:0.16
Consensus pattern (21 bp):
TGTGGCAAAGACACAAACCCG
Found at i:67755104 original size:67 final size:67
Alignment explanation
Indices: 67755026--67755158 Score: 257
Period size: 67 Copynumber: 2.0 Consensus size: 67
67755016 GGGGAGGGGA
67755026 GAGGAGAGAGGAGAGAGGGAGGTGGAGGGATTTTTATTTTATTTAATATAAATATAAATTTATTA
1 GAGGAGAGAGGAGAGAGGGAGGTGGAGGGATTTTTATTTTATTTAATATAAATATAAATTTATTA
67755091 TG
66 TG
*
67755093 GAGGGGAGAGGAGAGAGGGAGGTGGAGGGATTTTTATTTTATTTAATATAAATATAAATTTATTA
1 GAGGAGAGAGGAGAGAGGGAGGTGGAGGGATTTTTATTTTATTTAATATAAATATAAATTTATTA
67755158 T
66 T
67755159 TTATTATTTT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.35, C:0.00, G:0.30, T:0.35
Consensus pattern (67 bp):
GAGGAGAGAGGAGAGAGGGAGGTGGAGGGATTTTTATTTTATTTAATATAAATATAAATTTATTA
TG
Found at i:67755284 original size:9 final size:9
Alignment explanation
Indices: 67755263--67755345 Score: 51
Period size: 9 Copynumber: 8.6 Consensus size: 9
67755253 GAGGAATTTT
67755263 TATTTTTATA
1 TATTTTTA-A
67755273 TATTTTTAA
1 TATTTTTAA
67755282 TATTTATTAA
1 TATTT-TTAA
**
67755292 -AAATTTAA
1 TATTTTTAA
*
67755300 AATTTTTATTA
1 TATTTTTA--A
67755311 TATTTATTAA
1 TATTT-TTAA
*
67755321 TATAAATTTAA
1 TAT--TTTTAA
*
67755332 AATTTTTAA
1 TATTTTTAA
67755341 TATTT
1 TATTT
67755346 ATTTTTATAT
Statistics
Matches: 57, Mismatches: 9, Indels: 15
0.70 0.11 0.19
Matches are distributed among these distances:
8 4 0.07
9 22 0.39
10 16 0.28
11 11 0.19
12 4 0.07
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (9 bp):
TATTTTTAA
Found at i:67755333 original size:32 final size:27
Alignment explanation
Indices: 67755274--67755348 Score: 105
Period size: 32 Copynumber: 2.6 Consensus size: 27
67755264 ATTTTTATAT
67755274 ATTTTTAATATTTATTAAAAATTTAAA
1 ATTTTTAATATTTATTAAAAATTTAAA
67755301 ATTTTTATTATATTTATTAATATAAATTTAAA
1 ATTTTTA--ATATTTATT-A-A-AAATTTAAA
67755333 ATTTTTAATATTTATT
1 ATTTTTAATATTTATT
67755349 TTTATATATT
Statistics
Matches: 43, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
27 7 0.16
29 9 0.21
30 10 0.23
31 1 0.02
32 16 0.37
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (27 bp):
ATTTTTAATATTTATTAAAAATTTAAA
Found at i:67755347 original size:39 final size:38
Alignment explanation
Indices: 67755257--67755348 Score: 107
Period size: 39 Copynumber: 2.4 Consensus size: 38
67755247 GAGGTGGAGG
**
67755257 AATTTTT-ATTTTTA-TATATTTTTAATATTTATTAAA
1 AATTTTTAATTTTTATTATATTTTTAATATAAATTAAA
** *
67755293 AATTTAAAATTTTTATTATATTTATTAATATAAATTTAA
1 AATTTTTAATTTTTATTATATTT-TTAATATAAATTAAA
*
67755332 AATTTTTAATATTTATT
1 AATTTTTAATTTTTATT
67755349 TTTATATATT
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
36 5 0.11
37 7 0.16
38 7 0.16
39 26 0.58
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (38 bp):
AATTTTTAATTTTTATTATATTTTTAATATAAATTAAA
Found at i:67755356 original size:32 final size:30
Alignment explanation
Indices: 67755274--67755359 Score: 106
Period size: 30 Copynumber: 2.9 Consensus size: 30
67755264 ATTTTTATAT
67755274 ATTTTTAATATTTA-TTA-A-AAATTTAAA
1 ATTTTTAATATTTATTTATATAAATTTAAA
*
67755301 ATTTTTATTATATTTATTAATATAAATTTAAA
1 ATTTTTA--ATATTTATTTATATAAATTTAAA
* *
67755333 ATTTTTAATATTTATTTTTATATATTT
1 ATTTTTAATATTTATTTATATAAATTT
67755360 TTTAAATTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
27 7 0.14
29 7 0.14
30 19 0.38
31 1 0.02
32 16 0.32
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (30 bp):
ATTTTTAATATTTATTTATATAAATTTAAA
Found at i:67755366 original size:39 final size:40
Alignment explanation
Indices: 67755261--67755368 Score: 98
Period size: 41 Copynumber: 2.6 Consensus size: 40
67755251 TGGAGGAATT
67755261 TTTATTTTTATATA-TTTTTAATATTTATTAAAAATTTAAAA
1 TTTATTTTTATATATTTTTTAA-ATTTA-TAAAAATTTAAAA
* ** *
67755302 TTT-TTATTATAT-TTATTAATATAAATTTA-AAATTTTTAATA
1 TTTATTTTTATATATT-TT--T-TAAATTTATAAAAATTTAAAA
67755343 TTTATTTTTATATATTTTTTAAATTT
1 TTTATTTTTATATATTTTTTAAATTT
67755369 TAGATATTAT
Statistics
Matches: 55, Mismatches: 5, Indels: 16
0.72 0.07 0.21
Matches are distributed among these distances:
39 7 0.13
40 10 0.18
41 17 0.31
42 10 0.18
43 8 0.15
44 3 0.05
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (40 bp):
TTTATTTTTATATATTTTTTAAATTTATAAAAATTTAAAA
Found at i:67755431 original size:22 final size:21
Alignment explanation
Indices: 67755404--67755463 Score: 56
Period size: 20 Copynumber: 2.9 Consensus size: 21
67755394 AATAATTTTT
67755404 TTTATTCTTATGTATTTTTAAA
1 TTTATT-TTATGTATTTTTAAA
67755426 TTTATTATTA--TATTTTTGAAA
1 TTTATT-TTATGTATTTTT-AAA
*
67755447 -ATA-TTTATGTATTTTTA
1 TTTATTTTATGTATTTTTA
67755464 TATATTTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
18 3 0.09
19 2 0.06
20 16 0.48
21 3 0.09
22 9 0.27
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (21 bp):
TTTATTTTATGTATTTTTAAA
Found at i:67756399 original size:36 final size:36
Alignment explanation
Indices: 67756352--67756424 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
67756342 ACATGGCCTA
67756352 TAAGATATCCCCAATGCTTTCCATACTAGTTCTTCT
1 TAAGATATCCCCAATGCTTTCCATACTAGTTCTTCT
67756388 TAAGATATCCCCAATGCTTTCCATACTAGTTCTTCT
1 TAAGATATCCCCAATGCTTTCCATACTAGTTCTTCT
67756424 T
1 T
67756425 CCATTCTCCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.25, C:0.27, G:0.08, T:0.40
Consensus pattern (36 bp):
TAAGATATCCCCAATGCTTTCCATACTAGTTCTTCT
Found at i:67773991 original size:26 final size:26
Alignment explanation
Indices: 67773953--67774062 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
67773943 TGATACAAAT
* *
67773953 TGATAAAATGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
67773979 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
67774005 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
67774031 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
67774057 TGATAA
1 TGATAA
67774063 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:67779798 original size:26 final size:26
Alignment explanation
Indices: 67779760--67779869 Score: 157
Period size: 26 Copynumber: 4.2 Consensus size: 26
67779750 TGATACAAAT
* * *
67779760 TGATAAAATGTTAGGTAAATGTTCCG
1 TGATAATAGGTTAGGTAAATGTTCCA
67779786 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
67779812 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
67779838 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
67779864 TGATAA
1 TGATAA
67779870 GAATTTCATG
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:67787457 original size:16 final size:16
Alignment explanation
Indices: 67787438--67787483 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
67787428 TGAAAAGAAA
*
67787438 AAAAACAAAAAAAAAT
1 AAAAACAAAAAAAAAG
* *
67787454 AAAAAGAAAAAAAAGG
1 AAAAACAAAAAAAAAG
67787470 ACAAAACAAAAAAA
1 A-AAAACAAAAAAA
67787484 GAAATCAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.85, C:0.07, G:0.07, T:0.02
Consensus pattern (16 bp):
AAAAACAAAAAAAAAG
Found at i:67787475 original size:25 final size:25
Alignment explanation
Indices: 67787430--67787487 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
67787420 GACAGTCATG
67787430 AAAAGAAAAAAAACAAAAAAA-AATA
1 AAAAGAAAAAAAACAAAAAAACAA-A
** *
67787455 AAAAGAAAAAAAAGGACAAAACAAA
1 AAAAGAAAAAAAACAAAAAAACAAA
67787480 AAAAGAAA
1 AAAAGAAA
67787488 TCAAATGCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 27 0.93
26 2 0.07
ACGTcount: A:0.84, C:0.05, G:0.09, T:0.02
Consensus pattern (25 bp):
AAAAGAAAAAAAACAAAAAAACAAA
Found at i:67789763 original size:73 final size:72
Alignment explanation
Indices: 67789667--67790407 Score: 1241
Period size: 73 Copynumber: 10.2 Consensus size: 72
67789657 TGATGCTTTT
67789667 ATTTCTG-TTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
67789731 TATTTTCA
65 TAATTTCA
67789739 ATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
67789804 TAATTTCA
65 TAATTTCA
67789812 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
67789877 AATTTCA
66 AATTTCA
* * *
67789884 ATTTTTTTTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
1 A-TTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
67789949 TATTTTCA
65 TAATTTCA
*
67789957 ATTTCTACTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCT-GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
67790022 TAATTTCA
65 TAATTTCA
* * *
67790030 ATTTCTGTTTTCAAAATTCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACATTGAGGC
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
67790095 ATTTTCA
66 AATTTCA
* *
67790102 ATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
67790167 TATTTTCA
65 TAATTTCA
*
67790175 ATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGTCTCAAGACACGTTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
67790240 TAATTTCA
65 TAATTTCA
*
67790248 ATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
67790313 AATTTCA
66 AATTTCA
*
67790320 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
67790385 ATTTTCA
66 AATTTCA
**
67790392 AAATCTGCTTTTCAAA
1 ATTTCTG-TTTTCAAA
67790408 TTAAGTTTCA
Statistics
Matches: 635, Mismatches: 28, Indels: 11
0.94 0.04 0.02
Matches are distributed among these distances:
72 281 0.44
73 350 0.55
74 4 0.01
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (72 bp):
ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
AATTTCA
Found at i:67789930 original size:145 final size:145
Alignment explanation
Indices: 67789667--67790407 Score: 1209
Period size: 145 Copynumber: 5.1 Consensus size: 145
67789657 TGATGCTTTT
67789667 ATTTCTG-TTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* * *
67789731 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
65 TAATTTCAATTTTTTCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
* *
67789796 CGTTGAGGTAATTTCA
130 CATTGAGGTATTTTCA
67789812 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
67789877 AATTTCAATTTTTTTTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 AATTTCAATTTTTTCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
67789942 ATTGAGGTATTTTCA
131 ATTGAGGTATTTTCA
*
67789957 ATTTCTACTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCT-GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* * *
67790022 TAATTTCAA-TTTCTGTTTTCAAAATTCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACA
65 TAATTTCAATTTTTTCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
*
67790086 CATTGAGGCATTTTCA
130 CATTGAGGTATTTTCA
* *
67790102 ATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
1 ATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* * * *
67790167 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGTCTCAAGACA
65 TAATTTCAATTTTTTCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
* *
67790232 CGTTGAGGTAATTTCA
130 CATTGAGGTATTTTCA
*
67790248 ATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
* *
67790313 AATTTCAA-TTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 AATTTCAATTTTTTCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
67790377 ATTGAGGTATTTTCA
131 ATTGAGGTATTTTCA
**
67790392 AAATCTGCTTTTCAAA
1 ATTTCTG-TTTTCAAA
67790408 TTAAGTTTCA
Statistics
Matches: 554, Mismatches: 37, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
144 69 0.12
145 347 0.63
146 138 0.25
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (145 bp):
ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
AATTTCAATTTTTTCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
ATTGAGGTATTTTCA
Found at i:67790057 original size:218 final size:218
Alignment explanation
Indices: 67789668--67790407 Score: 1329
Period size: 218 Copynumber: 3.4 Consensus size: 218
67789658 GATGCTTTTA
*
67789668 TTTCTGTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
1 TTTCT-TTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTA
67789733 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
64 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
67789798 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
129 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
67789863 AGACACGTTGAGGTAATTTCAATTT
194 AGACACGTTGAGGTAATTTCAATTT
*
67789888 TTTTTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATT
1 TTTCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATT
*
67789953 TTCAATTTCTACTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
66 TTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
*
67790018 GAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAG
131 GAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
* * *
67790083 ACACATTGAGGCATTTTCAATTT
196 ACACGTTGAGGTAATTTCAATTT
*
67790106 TTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATT
1 TTTCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATT
*
67790171 TTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGTCTCAAGACACGTT
66 TTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
*
67790236 GAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG
131 GAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
67790301 ACACGTTGAGGTAATTTCAA-TT
196 ACACGTTGAGGTAATTTCAATTT
* *
67790323 TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATT
1 TTTCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATT
**
67790388 TTCAAAATCTGCTTTTCAAA
66 TTCAATTTCTGCTTTTCAAA
67790408 TTAAGTTTCA
Statistics
Matches: 499, Mismatches: 21, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
217 82 0.16
218 409 0.82
219 4 0.01
220 4 0.01
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (218 bp):
TTTCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATT
TTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
GAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
ACACGTTGAGGTAATTTCAATTT
Found at i:67790508 original size:14 final size:13
Alignment explanation
Indices: 67790475--67790504 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
67790465 TGCTGAGGTA
*
67790475 TTTTCAATTTTTG
1 TTTTCAATTTATG
67790488 TTTTCAATTTATG
1 TTTTCAATTTATG
67790501 TTTT
1 TTTT
67790505 TCAAAAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.07, G:0.07, T:0.70
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:67790517 original size:89 final size:87
Alignment explanation
Indices: 67790315--67790544 Score: 277
Period size: 89 Copynumber: 2.6 Consensus size: 87
67790305 GTTGAGGTAA
* * **
67790315 TTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACAT
1 TTTCAATTTATGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACAT
67790379 TGAGGTATTTTCAAAATCTGCT
66 TGAGGTATTTTCAAAATCTGCT
* * * * * * *
67790401 TTTCAAATTAAG-TTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGTCTCAGGTCAGA
1 TTTCAATTTATGTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACA
** *
67790465 TGCTGAGGTATTTTCAATTTTTG-T
65 T--TGAGGTATTTTCAAAATCTGCT
67790489 TTTCAATTTATGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTCAATTTATG-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
67790545 TTTAATTCAT
Statistics
Matches: 120, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
85 4 0.03
86 9 0.08
87 39 0.32
88 11 0.09
89 53 0.44
90 4 0.03
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (87 bp):
TTTCAATTTATGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACAT
TGAGGTATTTTCAAAATCTGCT
Found at i:67790581 original size:54 final size:54
Alignment explanation
Indices: 67790499--67790807 Score: 524
Period size: 54 Copynumber: 5.8 Consensus size: 54
67790489 TTTCAATTTA
*
67790499 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCA
1 TGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCC
*
67790554 TGTTTTTCAAAAATCAACTCATATTGC-------GAGTTGAACCTTTTAATTCC
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCC
*
67790601 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTCC
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCC
67790655 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCC
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCC
*
67790709 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTC
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCC
67790763 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
67790808 CGGGTCACAT
Statistics
Matches: 243, Mismatches: 4, Indels: 15
0.93 0.02 0.06
Matches are distributed among these distances:
47 45 0.19
54 190 0.78
55 8 0.03
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.37
Consensus pattern (54 bp):
TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTCC
Found at i:67791423 original size:25 final size:25
Alignment explanation
Indices: 67791389--67791436 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
67791379 AAAAGTCTTT
67791389 ACTCTATTCTCGTTACACGACAACA
1 ACTCTATTCTCGTTACACGACAACA
*
67791414 ACTCTGTTCTCGTTACACGACAA
1 ACTCTATTCTCGTTACACGACAA
67791437 TGAGTAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.29
Consensus pattern (25 bp):
ACTCTATTCTCGTTACACGACAACA
Found at i:67791854 original size:15 final size:15
Alignment explanation
Indices: 67791836--67792007 Score: 162
Period size: 15 Copynumber: 11.5 Consensus size: 15
67791826 GGGGAAGCAA
*
67791836 AAAAAAATTTCCAAC
1 AAAAAAATTTCCAGC
*
67791851 AAAAAAATTCTAGCAGC
1 AAAAAAATT-T-CCAGC
*
67791868 AAAAAATTTTCCAGC
1 AAAAAAATTTCCAGC
67791883 -AAAAAA-TTCCAGC
1 AAAAAAATTTCCAGC
67791896 AGCAAAAAA-TTCTCAGC
1 A--AAAAAATTTC-CAGC
*
67791913 AAAAAAATTCCCAGC
1 AAAAAAATTTCCAGC
*
67791928 AAAAAAATTCCCAGC
1 AAAAAAATTTCCAGC
67791943 AAAAAAA-TTCCAGCC
1 AAAAAAATTTCCAG-C
*
67791958 AAAAAGAA-TTCTAGC
1 AAAAA-AATTTCCAGC
67791973 AAAGAAAA-TTCCA--
1 AAA-AAAATTTCCAGC
67791986 AAAAAAATTTCCAGC
1 AAAAAAATTTCCAGC
67792001 AAAAAAA
1 AAAAAAA
67792008 AACCAAAAAA
Statistics
Matches: 135, Mismatches: 9, Indels: 26
0.79 0.05 0.15
Matches are distributed among these distances:
12 4 0.03
13 15 0.11
14 10 0.07
15 68 0.50
16 22 0.16
17 16 0.12
ACGTcount: A:0.55, C:0.20, G:0.08, T:0.17
Consensus pattern (15 bp):
AAAAAAATTTCCAGC
Found at i:67791871 original size:16 final size:16
Alignment explanation
Indices: 67791852--67791918 Score: 86
Period size: 16 Copynumber: 4.4 Consensus size: 16
67791842 ATTTCCAACA
67791852 AAAAAATTCTAGCAGC
1 AAAAAATTCTAGCAGC
**
67791868 AAAAAATT-TTCCAGC
1 AAAAAATTCTAGCAGC
*
67791883 AAAAAATTCCAGCAGC
1 AAAAAATTCTAGCAGC
67791899 AAAAAATTCT--CAGC
1 AAAAAATTCTAGCAGC
67791913 AAAAAA
1 AAAAAA
67791919 ATTCCCAGCA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
14 10 0.23
15 13 0.30
16 21 0.48
ACGTcount: A:0.54, C:0.19, G:0.09, T:0.18
Consensus pattern (16 bp):
AAAAAATTCTAGCAGC
Found at i:67791875 original size:31 final size:30
Alignment explanation
Indices: 67791837--67792007 Score: 160
Period size: 31 Copynumber: 5.7 Consensus size: 30
67791827 GGGAAGCAAA
*
67791837 AAAAAATTTCCAACAAAAAAATTCTAGCAGC
1 AAAAAATTTCCAGCAAAAAAATTC-AGCAGC
67791868 AAAAAATTTTCCAGC-AAAAAATTCCAGCAGC
1 AAAAAA-TTTCCAGCAAAAAAATT-CAGCAGC
*
67791899 AAAAAA-TTCTCAGCAAAAAAATTC-CCAGC
1 AAAAAATTTC-CAGCAAAAAAATTCAGCAGC
*
67791928 AAAAAAATTCCCAGCAAAAAAATTC--CAGCC
1 -AAAAAATTTCCAGCAAAAAAATTCAGCAG-C
* * *
67791958 AAAAAGAATTCTAGCAAAGAAAATTC--CA-A
1 AAAAA-ATTTCCAGCAAA-AAAATTCAGCAGC
67791987 AAAAAATTTCCAGCAAAAAAA
1 AAAAAATTTCCAGCAAAAAAA
67792008 AACCAAAAAA
Statistics
Matches: 122, Mismatches: 9, Indels: 22
0.80 0.06 0.14
Matches are distributed among these distances:
27 4 0.03
28 10 0.08
29 20 0.16
30 35 0.29
31 45 0.37
32 8 0.07
ACGTcount: A:0.55, C:0.20, G:0.08, T:0.17
Consensus pattern (30 bp):
AAAAAATTTCCAGCAAAAAAATTCAGCAGC
Found at i:67791986 original size:27 final size:27
Alignment explanation
Indices: 67791956--67792017 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
67791946 AAAATTCCAG
* * **
67791956 CCAAAAAGAA-TTCTAGCAAAGAAAATT
1 CCAAAAAAAATTTCCAGCAAA-AAAAAA
67791983 CCAAAAAAAATTTCCAGCAAAAAAAAA
1 CCAAAAAAAATTTCCAGCAAAAAAAAA
67792010 CCAAAAAA
1 CCAAAAAA
67792018 GGAACATTCA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 21 0.70
28 9 0.30
ACGTcount: A:0.63, C:0.18, G:0.06, T:0.13
Consensus pattern (27 bp):
CCAAAAAAAATTTCCAGCAAAAAAAAA
Found at i:67792500 original size:31 final size:34
Alignment explanation
Indices: 67792432--67792504 Score: 85
Period size: 36 Copynumber: 2.1 Consensus size: 34
67792422 GAGTGATATG
* *
67792432 TTAAGTTAGTGGGTTGGGTTGGTTGTGTTGGGTTTA
1 TTAAGTTAGTGAGTTGGGTTGGTTGTGTT--GATTA
*
67792468 TTAAGTTAGTGAGTTGGGTTGGTT-TGTATTATTA
1 TTAAGTTAGTGAGTTGGGTTGGTTGTGT-TGATTA
67792502 TTA
1 TTA
67792505 TTTTTAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
34 6 0.18
35 3 0.09
36 24 0.73
ACGTcount: A:0.16, C:0.00, G:0.34, T:0.49
Consensus pattern (34 bp):
TTAAGTTAGTGAGTTGGGTTGGTTGTGTTGATTA
Found at i:67794823 original size:131 final size:131
Alignment explanation
Indices: 67794586--67794839 Score: 447
Period size: 131 Copynumber: 1.9 Consensus size: 131
67794576 TCATTTAAAG
*
67794586 ATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCTTATCGTGCTGG
1 ATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCTTATCGTGCTAG
* * *
67794651 GTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGTCTTTAGA
66 GTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCTTTAGA
67794716 A
131 A
*
67794717 ATTCTTTAAAACGAAGG-AAGTGTTCGATGTTTGGCAATTCGGGGAATCTTGCCTTATCGTGCTA
1 ATTCTTTAAAACGAAGGCAA-TGTTCGATGTTTGGCAATTCGGGGAATCGTGCCTTATCGTGCTA
67794781 GGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
65 GGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
67794840 TTTCTAAACT
Statistics
Matches: 117, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
130 2 0.02
131 115 0.98
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (131 bp):
ATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCTTATCGTGCTAG
GTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCTTTAGA
A
Found at i:67795522 original size:39 final size:39
Alignment explanation
Indices: 67795468--67795548 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
67795458 ATAAATTTTC
*
67795468 AATTAAGTTTTAATTTGGTTGGTATTAATATTGTTGATG
1 AATTAAGTTTTAATTTGGTTGGTATTAATATTGTTGAAG
67795507 AATTAAGTTTTAATTTGGTTGGTATTAATATTGTTGAAG
1 AATTAAGTTTTAATTTGGTTGGTATTAATATTGTTGAAG
67795546 AAT
1 AAT
67795549 AAATAAAATA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (39 bp):
AATTAAGTTTTAATTTGGTTGGTATTAATATTGTTGAAG
Found at i:67798556 original size:39 final size:39
Alignment explanation
Indices: 67798500--67798601 Score: 168
Period size: 39 Copynumber: 2.6 Consensus size: 39
67798490 ACAAAGCATG
67798500 CGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAATACCAGCACGAATGCCTT
*
67798541 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
*
67798580 CGAGACTTAGCCCGGATATAAT
1 CGGGACTTAGCCCGGATATAAT
67798602 TCTCCATTAT
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
39 50 0.86
40 2 0.03
41 6 0.10
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
Found at i:67800355 original size:19 final size:19
Alignment explanation
Indices: 67800331--67800371 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
67800321 GTTATAATAT
*
67800331 TAATATTCCTTTAATATTA
1 TAATATTCATTTAATATTA
*
67800350 TAATATTCATTTCATATTA
1 TAATATTCATTTAATATTA
67800369 TAA
1 TAA
67800372 AACAATTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATATTCATTTAATATTA
Found at i:67813690 original size:23 final size:23
Alignment explanation
Indices: 67813664--67813708 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
67813654 AGGGGGGGTT
67813664 AAAGTGAAAACCCGCAAAGGGCC
1 AAAGTGAAAACCCGCAAAGGGCC
67813687 AAAGTGAAAACCCGCAAAGGGC
1 AAAGTGAAAACCCGCAAAGGGC
67813709 GCTTTGAGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.44, C:0.24, G:0.27, T:0.04
Consensus pattern (23 bp):
AAAGTGAAAACCCGCAAAGGGCC
Found at i:67815268 original size:180 final size:178
Alignment explanation
Indices: 67814851--67815656 Score: 983
Period size: 180 Copynumber: 4.5 Consensus size: 178
67814841 ATTAGGTAAA
* *
67814851 AATTGAAGATCTTATCTCCCTGAAGTTGCAA-CGGAGCAGATCTTCGTAGATGATGAATCTTATC
1 AATTGAAGATCTTATCTCCCTGAA-TTG-AAGCGGAGCAGATCTTCGCAGATGGTGAATCTTATC
* * * *
67814915 TTCATGTATCGGCAATGGAGCAGATTTTACCACCAACCTCATCTTTCTGAGGTAGCATGAGAGCA
64 TCCATGTATCGGCAATGGAGCAGATTTTACCACTAACCTCATCTCTCTGAGGTAGCAAGAGAGCA
* *
67814980 GGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAATGAAGCAGACTGGG
129 GGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAG
* * * * * **
67815030 AATTAAAGATCTTATCTCCCTGAAATTGCAA-CAGAGTAGATTTTCACAGACAGTGAATCTTATC
1 AATTGAAGATCTTATCTCCCTG-AATTG-AAGCGGAGCAGATCTTCGCAGATGGTGAATCTTATC
* *
67815094 TCCATGTATCAGCAATGGAGCAGATTTTACCACTAAGCCTTATCTCTCTGAGGTAGCAAGAGAGC
64 TCCATGTATCGGCAATGGAGCAGATTTTACCACTAA-CCTCATCTCTCTGAGGTAGCAAGAGAGC
* *
67815159 AGGTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAAACTGAG
128 AGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAG
* *
67815210 AATTGAAGATTTTATCTCTCTGAGATTGAAGCGGAGCAGATCTTCGCAGATGGTGAATCTTATCT
1 AATTGAAGATCTTATCTCCCTGA-ATTGAAGCGGAGCAGATCTTCGCAGATGGTGAATCTTATCT
* ** * *
67815275 CTATGTATCGGTGATGGAGCAGATTTTAGCCACTAACCTTATCTCTCTGAGGTAGTAAGAGAGCA
65 CCATGTATCGGCAATGGAGCAGATTTTA-CCACTAACCTCATCTCTCTGAGGTAGCAAGAGAGCA
* * * *
67815340 GGTTGAAGAATGAGTTTTATTTTCCTGAGGTAGCAAAGAAGCAGACTAAG
129 GGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAG
* * * * * *
67815390 AATTGAAGATCTTATATCCCTGAGATGGCAGTGAAGCAGATCTTCGCAGATGGTGAATTTTATCT
1 AATTGAAGATCTTATCTCCCTGA-ATTGAAGCGGAGCAGATCTTCGCAGATGGTGAATCTTATCT
*** * * ** * *
67815455 CCATGTATCTATAATGGAGCAAATTTTACCACCAGTCTCATTTCTCTGAGGTAGCAAGAGAGTAG
65 CCATGTATCGGCAATGGAGCAGATTTTACCACTAACCTCATCTCTCTGAGGTAGCAAGAGAGCAG
*
67815520 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGAG
130 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAG
* * * * * * * * * *
67815569 GATTGAGGATATTAGCTCCCTGAAGTTGCAGTGGAGCA-A-ATT-GAAAATGATGAATCTTATCT
1 AATTGAAGATCTTATCTCCCTGAA-TTGAAGCGGAGCAGATCTTCGCAGATGGTGAATCTTATCT
*
67815631 CCATGTATTGGCAATGGAGCAGATTT
65 CCATGTATCGGCAATGGAGCAGATTT
67815657 AACCTATCAA
Statistics
Matches: 540, Mismatches: 81, Indels: 15
0.85 0.13 0.02
Matches are distributed among these distances:
176 37 0.07
177 2 0.00
178 2 0.00
179 191 0.35
180 301 0.56
181 7 0.01
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (178 bp):
AATTGAAGATCTTATCTCCCTGAATTGAAGCGGAGCAGATCTTCGCAGATGGTGAATCTTATCTC
CATGTATCGGCAATGGAGCAGATTTTACCACTAACCTCATCTCTCTGAGGTAGCAAGAGAGCAGG
TTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAG
Found at i:67815537 original size:359 final size:359
Alignment explanation
Indices: 67814851--67815674 Score: 1054
Period size: 359 Copynumber: 2.3 Consensus size: 359
67814841 ATTAGGTAAA
* *
67814851 AATTGAAGATCTTATCTCCCTGAAGTTGCAA-CGGAGCAGATCTTCGTAGATGATGAATCTTATC
1 AATTGAAGATATTATCTCCCTGAAGTTG-AAGCGGAGCAGATCTTCGAAGATGATGAATCTTATC
* *
67814915 T-TCATGTATCGGCAATGGAGCAGATTTTACCACCAACCTCATCTTTCTGAGGTAGCATGAGAGC
65 TCT-ATGTATCGGCAATGGAGCAGATTTTACCACCAACCTCATCTCTCTGAGGTAGCAAGAGAGC
* **
67814979 AGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAATGAAGCAGACTGGGAATTAAAGATCTTA
129 AGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAAGAAGCAGACTAAGAATTAAAGATCTTA
* * * *
67815044 TCTCCCTGAAATTGCAACAGAGTAGATTTTCACAGACAGTGAATCTTATCTCCATGTATCAGCAA
194 TATCCCTGAAATGGCAACAGAGCAGATCTTCACAGACAGTGAATCTTATCTCCATGTATCAGCAA
* *
67815109 TGGAGCAGATTTTACCACTAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATGAG
259 TGGAGCAAATTTTACCACTAAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATGAG
*
67815174 TCTTATCTTCTTGAGGTAGCAAGGAAGCAAACTGAG
324 TCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAG
* * * *
67815210 AATTGAAGATTTTATCTCTCTG-AGATTGAAGCGGAGCAGATCTTCGCAGATGGTGAATCTTATC
1 AATTGAAGATATTATCTCCCTGAAG-TTGAAGCGGAGCAGATCTTCGAAGATGATGAATCTTATC
** * * *
67815274 TCTATGTATCGGTGATGGAGCAGATTTTAGCCACTAACCTTATCTCTCTGAGGTAGTAAGAGAGC
65 TCTATGTATCGGCAATGGAGCAGATTTTA-CCACCAACCTCATCTCTCTGAGGTAGCAAGAGAGC
* * *
67815339 AGGTTGAAGAATGAGTTTTATTTTCCTGAGGTAGCAAAGAAGCAGACTAAGAATTGAAGATCTTA
129 AGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAAGAAGCAGACTAAGAATTAAAGATCTTA
* ** * ** * *
67815404 TATCCCTGAGATGGC-AGTGAAGCAGATCTTCGCAGATGGTGAATTTTATCTCCATGTATCTA-T
194 TATCCCTGAAATGGCAACAG-AGCAGATCTTCACAGACAGTGAATCTTATCTCCATGTATC-AGC
* * * *
67815467 AATGGAGCAAATTTTACCAC-CAGTCTCATTTCTCTGAGGTAGCAAGAGAGTAGGTTGAAGAATG
257 AATGGAGCAAATTTTACCACTAAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATG
* *
67815531 AGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGAG
322 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAG
* * * * * * *
67815569 GATTGAGGATATTAGCTCCCTGAAGTTGCAGTGGAGCA-A-ATT-GAAAATGATGAATCTTATCT
1 AATTGAAGATATTATCTCCCTGAAGTTGAAGCGGAGCAGATCTTCGAAGATGATGAATCTTATCT
* * * * *
67815631 CCATGTATTGGCAATGGAGCAGATTTAACCTATCAACCTTATCT
66 CTATGTATCGGCAATGGAGCAGATTTTACC-ACCAACCTCATCT
67815675 TCCTAAAGGT
Statistics
Matches: 401, Mismatches: 56, Indels: 19
0.84 0.12 0.04
Matches are distributed among these distances:
355 2 0.00
356 51 0.13
357 2 0.00
358 5 0.01
359 183 0.46
360 157 0.39
361 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29
Consensus pattern (359 bp):
AATTGAAGATATTATCTCCCTGAAGTTGAAGCGGAGCAGATCTTCGAAGATGATGAATCTTATCT
CTATGTATCGGCAATGGAGCAGATTTTACCACCAACCTCATCTCTCTGAGGTAGCAAGAGAGCAG
GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAAGAAGCAGACTAAGAATTAAAGATCTTATA
TCCCTGAAATGGCAACAGAGCAGATCTTCACAGACAGTGAATCTTATCTCCATGTATCAGCAATG
GAGCAAATTTTACCACTAAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTC
TTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAG
Found at i:67820515 original size:19 final size:19
Alignment explanation
Indices: 67820466--67820517 Score: 77
Period size: 20 Copynumber: 2.7 Consensus size: 19
67820456 TTTGTATCAC
*
67820466 ATTAAAAATTTTGATATTA
1 ATTAAAAATTTTAATATTA
*
67820485 AGTTATAAATTTTAATATTA
1 A-TTAAAAATTTTAATATTA
67820505 ATTAAAAATTTTA
1 ATTAAAAATTTTA
67820518 GTTTCATGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (19 bp):
ATTAAAAATTTTAATATTA
Found at i:67821694 original size:127 final size:127
Alignment explanation
Indices: 67821441--67821759 Score: 323
Period size: 127 Copynumber: 2.5 Consensus size: 127
67821431 GTCAAACGAT
* * ** * * *
67821441 AAATCGAAACCCAACAC-GTAGGGCACAATTTCTCGAAATTTCCAAACA-CGAAATATTGCCTTT
1 AAATCGAAACCCAACACATTAGGGCACGATCCCTCG-AATTTCTAAACATC-AAACATCGCCTTT
* * * * ** * * *
67821504 CTTTTGAAG---A-AAAATGCAGACGAAATTTTAAAGGGATGTTTGATTCTTTAGATAAACAGA
64 GTTTTAAAGCTTAGAAAACGCAGACGAAATTTCAAAGGGAAATTTAATTATTTAAATAAACAGA
* * *
67821564 AAATCGAAACCCAACACATTAGGGCACGATTTCC-CGAA-TTCTCAAACATCAACCATCGCTTTT
1 AAATCGAAACCCAACACATTAGGGCACGA-TCCCTCGAATTTCT-AAACATCAAACATCGCCTTT
*
67821627 GTTTTAAAGCTTAGAAAACGCAGACGAGATTTCAAAGGGAAATTTAATTATTTAAATAAAC-GAA
64 GTTTTAAAGCTTAGAAAACGCAGACGAAATTTCAAAGGGAAATTTAATTATTTAAATAAACAG-A
* * *
67821691 AAATCGAAACCCAATACGTTAGGGCATGATCCCTCGAATTTCTAAACATCAAACATCGCCTTTGT
1 AAATCGAAACCCAACACATTAGGGCACGATCCCTCGAATTTCTAAACATCAAACATCGCCTTTGT
67821756 TTTA
66 TTTA
67821760 TTTAAAATTA
Statistics
Matches: 161, Mismatches: 24, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
122 3 0.02
123 40 0.25
124 12 0.07
125 3 0.02
126 5 0.03
127 94 0.58
128 4 0.02
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (127 bp):
AAATCGAAACCCAACACATTAGGGCACGATCCCTCGAATTTCTAAACATCAAACATCGCCTTTGT
TTTAAAGCTTAGAAAACGCAGACGAAATTTCAAAGGGAAATTTAATTATTTAAATAAACAGA
Found at i:67822301 original size:17 final size:18
Alignment explanation
Indices: 67822275--67822317 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
67822265 TGAATAAATA
*
67822275 AATAATAATAA-AATGAT
1 AATAAAAATAATAATGAT
*
67822292 AATAAAAATAATGATGAT
1 AATAAAAATAATAATGAT
*
67822310 AACAAAAA
1 AATAAAAA
67822318 CTTAAAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.23
Consensus pattern (18 bp):
AATAAAAATAATAATGAT
Found at i:67822653 original size:3 final size:3
Alignment explanation
Indices: 67822645--67822671 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
67822635 AAAAGAAAAT
67822645 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
67822672 GGCTTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:67822782 original size:15 final size:15
Alignment explanation
Indices: 67822764--67822805 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
67822754 ACAAATAGAC
67822764 GATAATAAAATAATA
1 GATAATAAAATAATA
67822779 GATAATAAGGTAATAATA
1 GATAATAA---AATAATA
67822797 -ATAATAAAA
1 GATAATAAAA
67822806 GCATAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
14 2 0.08
15 8 0.33
17 7 0.29
18 7 0.29
ACGTcount: A:0.64, C:0.00, G:0.10, T:0.26
Consensus pattern (15 bp):
GATAATAAAATAATA
Found at i:67825562 original size:137 final size:136
Alignment explanation
Indices: 67825316--67825601 Score: 509
Period size: 137 Copynumber: 2.1 Consensus size: 136
67825306 CATTGGGCCT
**
67825316 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
67825381 AGCCCCTTATTCAGATAACAGTATGGCCAATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCAATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
*
67825446 TATATGC
130 CATATGC
*
67825453 AAGCCCATTTGGGTAACAGTGGTACTGGGCTAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
67825518 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCAATAGGCCCATTTCAAAATACATGCAACATCAATAAC
67825583 ATATGC
131 ATATGC
67825589 AAGCCCATTTGGG
1 AAGCCCATTTGGG
67825602 GAGACTACTC
Statistics
Matches: 143, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
136 21 0.15
137 122 0.85
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCAATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:67825886 original size:25 final size:27
Alignment explanation
Indices: 67825849--67825901 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
67825839 TCAAACATGC
67825849 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
67825875 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
67825901 A
1 A
67825902 AAATTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:67827425 original size:26 final size:26
Alignment explanation
Indices: 67827389--67827472 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
67827379 CATGAAATTC
67827389 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
67827415 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
67827441 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
67827467 TTATCA
1 TTATCA
67827473 ATTTGCATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:67830418 original size:131 final size:130
Alignment explanation
Indices: 67830071--67830585 Score: 520
Period size: 131 Copynumber: 4.0 Consensus size: 130
67830061 AAAATTCCTT
* * ** * * ***
67830071 AAAACGAAGGCAATATTTGATTGCTTGAAAATTCGGGAATCATGCCCTATCATGCTGGGTTTTGA
1 AAAACGAAGGCAATACTCGA-TGCTTGGCAATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCAA
* * ** *
67830136 TTTCTCGTTTGTTCAAAATAATCGAATG-TTCCTTTAGAATCTCACTCGTGTTTTTCTAAA-TCC
65 TTTCTCGTTTGTTCAAAATAATCGAA-GATTCCTTTAGAATTTCACTCATGTTTTTAAAAACTCT
67830199 T-
129 TC
* * ** **
67830200 ATATA--AAGGCGATGTTCGATATTTGGCAATTCGCGGAATCGTGCCCTATCGTGCTGGGTTGCA
1 A-AAACGAAGGCAATACTCGATGCTTGGCAATTCG-GGAATCGTGCCCTATCGTGCTGGGTTGCA
* * * * * *
67830263 ATCTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTTGAATTTCACTTACGTTTTCTAAAAACTC
64 ATTTCTCGTTTGTTCAAAATAATCGAAGATTCCTTTAGAATTTCACTCATGTTTT-TAAAAACTC
*
67830328 TTT
128 TTC
* * * * * *
67830331 AAAACGAAGGCAATACTCGGTGCTTGGCAATTCGAGAATCATGCCCTATCGTGTTGAGTTGCGAT
1 AAAACGAAGGCAATACTCGATGCTTGGCAATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCAAT
* * * * * *
67830396 TTCTCGTTTGTTCGAAACAATCGAAGATTCCTTTGGAATTCCACTCATATCTTTAAAAACTCTTC
66 TTCTCGTTTGTTCAAAATAATCGAAGATTCCTTTAGAATTTCACTCATGTTTTTAAAAACTCTTC
* * * *
67830461 AAAACGAAGGTAATACTCGATGTTTGGCAACTCGGGGAATCGTGCCCTATCGTGCTGGGTTACAA
1 AAAACGAAGGCAATACTCGATGCTTGGCAATTC-GGGAATCGTGCCCTATCGTGCTGGGTTGCAA
* *
67830526 TTTC-CTGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTTTAAAA
65 TTTCTC-GTTTGTTCAAAATAATCGAAGATTCCTTTAGAATTTCACTCATGTTTTTAAAAA
67830586 TTCTAAAAAT
Statistics
Matches: 311, Mismatches: 65, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
127 11 0.04
128 81 0.26
129 5 0.02
130 48 0.15
131 144 0.46
132 22 0.07
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (130 bp):
AAAACGAAGGCAATACTCGATGCTTGGCAATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCAAT
TTCTCGTTTGTTCAAAATAATCGAAGATTCCTTTAGAATTTCACTCATGTTTTTAAAAACTCTTC
Found at i:67832677 original size:18 final size:20
Alignment explanation
Indices: 67832656--67832692 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
67832646 GATTTTTAAA
67832656 TTTTTTTCAT-ATATATAAT
1 TTTTTTTCATAATATATAAT
67832675 TTTTTTTCATAATATATA
1 TTTTTTTCATAATATATA
67832693 TAATATATGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTTTTCATAATATATAAT
Found at i:67834209 original size:31 final size:31
Alignment explanation
Indices: 67834172--67834237 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
67834162 AACAATCATG
*
67834172 TGACTTAAATAAAAACTTTTGAATAGTTCAA
1 TGACTTAAATAAAAACTTTGGAATAGTTCAA
* *
67834203 TGACTTAAATGAAACCTTTGGAATAGTTCAA
1 TGACTTAAATAAAAACTTTGGAATAGTTCAA
67834234 TGAC
1 TGAC
67834238 CATTTTATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTGGAATAGTTCAA
Found at i:67835132 original size:16 final size:16
Alignment explanation
Indices: 67835111--67835141 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67835101 ATTGGATGAT
67835111 AAAATAGAATTTTAAA
1 AAAATAGAATTTTAAA
*
67835127 AAAATATAATTTTAA
1 AAAATAGAATTTTAA
67835142 CTCCAAAGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (16 bp):
AAAATAGAATTTTAAA
Found at i:67835590 original size:37 final size:37
Alignment explanation
Indices: 67835540--67835614 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
67835530 TGCAGTTGCA
67835540 ACTATAAATGAACAACTAAAATAGTAAAAATAAAAAT
1 ACTATAAATGAACAACTAAAATAGTAAAAATAAAAAT
* * *
67835577 ACTATAAATGAACAACTAGACTATTAAAAATAAAAAT
1 ACTATAAATGAACAACTAAAATAGTAAAAATAAAAAT
67835614 A
1 A
67835615 GACACAAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.63, C:0.09, G:0.05, T:0.23
Consensus pattern (37 bp):
ACTATAAATGAACAACTAAAATAGTAAAAATAAAAAT
Found at i:67837313 original size:24 final size:23
Alignment explanation
Indices: 67837266--67837326 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 23
67837256 AATAGAGTTC
67837266 AAAATAAGGTATATAAAACAATTTT
1 AAAATAA-GTA-ATAAAACAATTTT
*
67837291 AAAATAAGTAATCAAAACGATTTT
1 AAAATAAGTAAT-AAAACAATTTT
*
67837315 -AAATAAATAATA
1 AAAATAAGTAATA
67837327 TATAATAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
22 1 0.03
23 12 0.36
24 13 0.39
25 7 0.21
ACGTcount: A:0.59, C:0.05, G:0.07, T:0.30
Consensus pattern (23 bp):
AAAATAAGTAATAAAACAATTTT
Found at i:67837325 original size:23 final size:24
Alignment explanation
Indices: 67837280--67837325 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
67837270 TAAGGTATAT
*
67837280 AAAACAATTTTAAAATAAGTAATC
1 AAAACAATTTTAAAATAAATAATC
*
67837304 AAAACGATTTT-AAATAAATAAT
1 AAAACAATTTTAAAATAAATAAT
67837326 ATATAATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.30
Consensus pattern (24 bp):
AAAACAATTTTAAAATAAATAATC
Found at i:67837576 original size:48 final size:48
Alignment explanation
Indices: 67837519--67837616 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
67837509 TATGATGTGT
67837519 AAAAAGAATTTTAAAATGGATAATAAAAAGCAAAACAGTTTTAATATA
1 AAAAAGAATTTTAAAATGGATAATAAAAAGCAAAACAGTTTTAATATA
*
67837567 AAAAAGAATTTTAAAATGGATAATAAAAGGCAAAACAGTTTTAATATA
1 AAAAAGAATTTTAAAATGGATAATAAAAAGCAAAACAGTTTTAATATA
67837615 AA
1 AA
67837617 TAATATATAT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.58, C:0.04, G:0.11, T:0.27
Consensus pattern (48 bp):
AAAAAGAATTTTAAAATGGATAATAAAAAGCAAAACAGTTTTAATATA
Found at i:67838134 original size:41 final size:40
Alignment explanation
Indices: 67838079--67838176 Score: 133
Period size: 41 Copynumber: 2.4 Consensus size: 40
67838069 GTTTGCGATA
* **
67838079 AAACGCCGCAAAAAACTGAGCAATAACGGCGTTTTTGGTTC
1 AAACGCCGCTAAAAA-TGAGCAATAACGGCGTTTTTGGCCC
* *
67838120 AAACGCAGCTAAAAATAGAGCAATCACGGCGTTTTTGGCCC
1 AAACGCCGCTAAAAAT-GAGCAATAACGGCGTTTTTGGCCC
67838161 AAACGCCGCTAAAAAT
1 AAACGCCGCTAAAAAT
67838177 TGAACAGTAG
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
40 1 0.02
41 49 0.98
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.19
Consensus pattern (40 bp):
AAACGCCGCTAAAAATGAGCAATAACGGCGTTTTTGGCCC
Found at i:67838191 original size:41 final size:40
Alignment explanation
Indices: 67838079--67838198 Score: 132
Period size: 41 Copynumber: 2.9 Consensus size: 40
67838069 GTTTGCGATA
* * **
67838079 AAACGCCGCAAAAAACTGAGCAATAACGGCGTTTTTGGTTC
1 AAACGCCGCTAAAAATTGAGCAAT-ACGGCGTTTTTGGCCC
* *
67838120 AAACGCAGCTAAAAATAGAGCAATCACGGCGTTTTTGGCCC
1 AAACGCCGCTAAAAATTGAGCAAT-ACGGCGTTTTTGGCCC
* * *
67838161 AAACGCCGCTAAAAATTGAACAGTAGCGGCGCTTTTGG
1 AAACGCCGCTAAAAATTGAGCAATA-CGGCGTTTTTGG
67838199 AAAAACGCCA
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 1 0.02
41 65 0.98
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (40 bp):
AAACGCCGCTAAAAATTGAGCAATACGGCGTTTTTGGCCC
Found at i:67838277 original size:40 final size:41
Alignment explanation
Indices: 67838184--67838328 Score: 211
Period size: 41 Copynumber: 3.6 Consensus size: 41
67838174 AATTGAACAG
*
67838184 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCTAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
* * * **
67838225 TAGCGGCGCTTTTGGAAAAACGCCACAATTGCTC-AATTTT
1 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
*
67838265 TAGCGGCGCTTTTGTAAAAACGCCACTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
*
67838306 TAGCGGTGCTTTTGGAAAAACGC
1 TAGCGGCGCTTTTGGAAAAACGC
67838329 TGCAAAAAAC
Statistics
Matches: 90, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
40 34 0.38
41 56 0.62
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCACTATAGATCGAGGTTT
Found at i:67838541 original size:14 final size:14
Alignment explanation
Indices: 67838521--67838570 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
67838511 TATGTATTAT
67838521 GGGTTTAGGGGTAA
1 GGGTTTAGGGGTAA
* * **
67838535 TGGTTTAAGGGTTG
1 GGGTTTAGGGGTAA
67838549 GGGTTTAGGGGTTAA
1 GGGTTTAGGGG-TAA
67838564 GGGTTTA
1 GGGTTTA
67838571 TATTTTAGGA
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
14 19 0.70
15 8 0.30
ACGTcount: A:0.18, C:0.00, G:0.46, T:0.36
Consensus pattern (14 bp):
GGGTTTAGGGGTAA
Found at i:67841305 original size:79 final size:81
Alignment explanation
Indices: 67841196--67841378 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
67841186 TACTCGTTCA
* *
67841196 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
67841259 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
67841276 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
67841339 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
67841355 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
67841379 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:67841378 original size:40 final size:40
Alignment explanation
Indices: 67841175--67841378 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
67841165 CGGAATTTAA
** *
67841175 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67841215 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67841255 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67841294 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
67841334 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
67841374 CCGGA
1 CCGGA
67841379 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:67847545 original size:23 final size:23
Alignment explanation
Indices: 67847515--67847616 Score: 159
Period size: 23 Copynumber: 4.4 Consensus size: 23
67847505 TGGTTGCTGC
67847515 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
67847538 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
* * *
67847561 TGTTTAAATGTTGCAAACTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
* *
67847584 TATTTAAATGCTGTATATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
67847607 TGTTTAAATG
1 TGTTTAAATG
67847617 TTCTTTGTGT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 70 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
TGTTTAAATGCTGTAAATTGAAG
Found at i:67849846 original size:44 final size:43
Alignment explanation
Indices: 67849744--67850146 Score: 214
Period size: 44 Copynumber: 8.8 Consensus size: 43
67849734 TCCTAGCTTT
* * * *
67849744 AATCTGTTCCACAGCAACTTCAGGAAAATAAGATTCGGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT--GTAACTTC
* *
67849789 AGTCTGCTTCACTGCAACTTCAGGGAGATAAGACTTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTAACTTC
* * * * *
67849833 AACCTGCTCCACTGTAGCTTCAGGGAGATATGATTTGTATCCTGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTA-----ACTTC
* * * *
67849882 AATCTGCTCCACTGCAACTTCAGGGAGATAAGTTTATAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTAACTTC
* * * **
67849925 AATTTGCTCTATTGCAACTTCAGAAAGATAA-ATTTTCCATGATAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA---T---TG-TAACTTC
* * * * **
67849974 GATATGCTCCACTGCAACTTTAGGGAGATAAAATTTGTGGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTAACTTC
* ***
67850018 AATTTGCTTGGCTGCAACTTCAGGGAGATAAGATTCGCCATGGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-T-----T-GTAACTTC
* * * * * **
67850068 AATATGCTCTACTGTAACTTTAGGGAGATAAAATTTGTGGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGTAACTTC
* * *
67850112 AATCTACTCCACTGCAACTTTAAGGAGATAAGATT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
67850147 CGCCATAATT
Statistics
Matches: 274, Mismatches: 64, Indels: 42
0.72 0.17 0.11
Matches are distributed among these distances:
43 31 0.11
44 106 0.39
45 31 0.11
46 2 0.01
48 7 0.03
49 62 0.23
50 35 0.13
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (43 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTAACTTC
Found at i:67850087 original size:94 final size:93
Alignment explanation
Indices: 67849878--67850152 Score: 320
Period size: 94 Copynumber: 2.9 Consensus size: 93
67849868 TGTATCCTGT
* * * * * * *
67849878 CTTCAATCTGCTCCACTGCAACTTCAGGGAGAT-AAGTTTATAGCTTTAATTTGCTCTATTGCAA
1 CTTCAATATGCTCCACTGCAACTTTAGGGAGATAAAATTTGTGGCTTCAATTTGCT-TACTGCAA
** **
67849942 CTTCAGAAAGATAA-ATTTTCCATGATAA
65 CTTCAGGGAGATAAGATTCGCCATGATAA
* *
67849970 CTTCGATATGCTCCACTGCAACTTTAGGGAGATAAAATTTGTGGCTTCAATTTGCTTGGCTGCAA
1 CTTCAATATGCTCCACTGCAACTTTAGGGAGATAAAATTTGTGGCTTCAATTTGCTT-ACTGCAA
*
67850035 CTTCAGGGAGATAAGATTCGCCATGGTAA
65 CTTCAGGGAGATAAGATTCGCCATGATAA
* * * * *
67850064 CTTCAATATGCTCTACTGTAACTTTAGGGAGATAAAATTTGTGGCTTCAATCTACTCCACTGCAA
1 CTTCAATATGCTCCACTGCAACTTTAGGGAGATAAAATTTGTGGCTTCAATTTGCT-TACTGCAA
* *
67850129 CTTTAAGGAGATAAGATTCGCCAT
65 CTTCAGGGAGATAAGATTCGCCAT
67850153 AATTTGTAGC
Statistics
Matches: 156, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
92 31 0.20
93 35 0.22
94 90 0.58
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (93 bp):
CTTCAATATGCTCCACTGCAACTTTAGGGAGATAAAATTTGTGGCTTCAATTTGCTTACTGCAAC
TTCAGGGAGATAAGATTCGCCATGATAA
Found at i:67858235 original size:19 final size:20
Alignment explanation
Indices: 67858219--67858256 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
67858209 TTATGAAACT
*
67858219 TAATGCATATG-ATGAAATG
1 TAATGCAAATGAATGAAATG
67858238 TAATGCAAATGAATGAAAT
1 TAATGCAAATGAATGAAAT
67858257 AAGTGCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.47, C:0.05, G:0.18, T:0.29
Consensus pattern (20 bp):
TAATGCAAATGAATGAAATG
Found at i:67869126 original size:3 final size:3
Alignment explanation
Indices: 67869118--67869142 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
67869108 TTAAAGGTGT
67869118 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
67869143 AACGAAAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:67869662 original size:110 final size:106
Alignment explanation
Indices: 67869519--67869728 Score: 330
Period size: 110 Copynumber: 1.9 Consensus size: 106
67869509 TTTCTTATTC
* * *
67869519 GATCTCCGACATTAACTGTTAGATCGACTTAGATCTAAGGTATATTCTACTCATCGATGGGTATT
1 GATCTCCAACACTAACTGTTAGATCGACTTAGATCTAAGGTATATTCTACTCATCAATGGGTATT
67869584 GATCCATGCACCATGCCAATCTTCGAATCATCGCTTGAATTCTTT
66 GAT-C---CACCATGCCAATCTTCGAATCATCGCTTGAATTCTTT
*
67869629 GATCTCCAACACTAACTGTTAGATCGACTTAGATCTAAGGTATCTTCTACTCATCAATGGGTATT
1 GATCTCCAACACTAACTGTTAGATCGACTTAGATCTAAGGTATATTCTACTCATCAATGGGTATT
* *
67869694 GATCCACCGTGCCAATCTTCGAATCGTCGCTTGAA
66 GATCCACCATGCCAATCTTCGAATCATCGCTTGAA
67869729 GCTCACTAGC
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
106 29 0.31
109 1 0.01
110 64 0.68
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.33
Consensus pattern (106 bp):
GATCTCCAACACTAACTGTTAGATCGACTTAGATCTAAGGTATATTCTACTCATCAATGGGTATT
GATCCACCATGCCAATCTTCGAATCATCGCTTGAATTCTTT
Found at i:67870450 original size:29 final size:30
Alignment explanation
Indices: 67870416--67870484 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
67870406 ACAAAAAAAA
67870416 TCATGTATAAGATCGCACA-AAATCAAAGT
1 TCATGTATAAGATCGCACACAAATCAAAGT
* * * **
67870445 TCATGTATGATATTGCACATCGGATCAAAGT
1 TCATGTATAAGATCGCACA-CAAATCAAAGT
67870476 TCATGTATA
1 TCATGTATA
67870485 GTTATTTAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 16 0.50
31 16 0.50
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (30 bp):
TCATGTATAAGATCGCACACAAATCAAAGT
Found at i:67870893 original size:13 final size:13
Alignment explanation
Indices: 67870875--67870901 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
67870865 AATTAGTTGC
67870875 TAATTTTGATTTT
1 TAATTTTGATTTT
67870888 TAATTTTGATTTT
1 TAATTTTGATTTT
67870901 T
1 T
67870902 CAGACTATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (13 bp):
TAATTTTGATTTT
Found at i:67875530 original size:81 final size:81
Alignment explanation
Indices: 67875395--67875558 Score: 294
Period size: 81 Copynumber: 2.0 Consensus size: 81
67875385 TCATCCAATC
* *
67875395 AATAGGTCTTTTTCTAGGTTGTAATGGTGCTAGGCTAAAGGTAGGAATAAAGAGAAGTGATTTTT
1 AATAGGTCTTTTACTAGGTTGTAATGGTGCTAGGCTAAAGATAGGAATAAAGAGAAGTGATTTTT
67875460 AGGTTCAAAACATCTT
66 AGGTTCAAAACATCTT
67875476 AATAGGTCTTTTACTAGGTTGTAATAGG-GCTAGGCTAAAGATAGGAATAAAGAGAAGTGATTTT
1 AATAGGTCTTTTACTAGGTTGTAAT-GGTGCTAGGCTAAAGATAGGAATAAAGAGAAGTGATTTT
67875540 TAGGTTCAAAACATCTT
65 TAGGTTCAAAACATCTT
67875557 AA
1 AA
67875559 CCCTAACTTT
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
81 78 0.98
82 2 0.03
ACGTcount: A:0.35, C:0.09, G:0.24, T:0.33
Consensus pattern (81 bp):
AATAGGTCTTTTACTAGGTTGTAATGGTGCTAGGCTAAAGATAGGAATAAAGAGAAGTGATTTTT
AGGTTCAAAACATCTT
Found at i:67875660 original size:3 final size:3
Alignment explanation
Indices: 67875652--67875689 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
67875642 CATGCTCATC
*
67875652 TTA TTA TTA TTA TTA TTA TTA TTA TAA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
67875690 TTCACATGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:67876849 original size:22 final size:21
Alignment explanation
Indices: 67876814--67876889 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
67876804 AAAAGGTATC
* *
67876814 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
67876835 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
67876858 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
67876877 TGC-AATCATATCT
1 TACAAATCATATCT
67876890 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:67876906 original size:35 final size:37
Alignment explanation
Indices: 67876843--67876921 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
67876833 ATTACAAAAT
67876843 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
67876879 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
67876914 CATATCAT
1 CATATCAT
67876922 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:67876919 original size:14 final size:15
Alignment explanation
Indices: 67876864--67876919 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
67876854 AGATTGCATA
67876864 TCATATCTAAGATTG
1 TCATATCTAAGATTG
67876879 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
67876897 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
67876914 -CATATC
1 TCATATC
67876920 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:67876929 original size:17 final size:19
Alignment explanation
Indices: 67876850--67876921 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
67876840 AATCATATCT
67876850 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
67876869 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
67876887 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
67876904 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
67876922 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:67877074 original size:21 final size:20
Alignment explanation
Indices: 67877035--67877075 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
67877025 CTGAACTTGG
**
67877035 ATTTTTTTTTTGGGTTTATT
1 ATTTTTTTTTTGGACTTATT
67877055 ATTTTTGTTTTTGGACTTATT
1 ATTTTT-TTTTTGGACTTATT
67877076 TCTGGGCCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.02, G:0.15, T:0.71
Consensus pattern (20 bp):
ATTTTTTTTTTGGACTTATT
Found at i:67877322 original size:44 final size:45
Alignment explanation
Indices: 67877268--67877466 Score: 249
Period size: 44 Copynumber: 4.5 Consensus size: 45
67877258 GGAAGGTGAT
* * **
67877268 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACG-CTT
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
67877312 TTTTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
67877357 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
67877401 ATCTGTTAACTTCGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
67877446 ATCTATCATCTTGGATCTGCT
1 ATCTGTTATCTTCGATCTGCT
67877467 TCGATGTAAA
Statistics
Matches: 133, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
44 78 0.59
45 55 0.41
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:67877423 original size:89 final size:89
Alignment explanation
Indices: 67877268--67877449 Score: 258
Period size: 89 Copynumber: 2.0 Consensus size: 89
67877258 GGAAGGTGAT
** *** * *
67877268 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCTTTTTTGTTATCTTCGATCTGCT
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCAAATCTGTTAACTTCGATCTGCT
67877333 CCCCGTCTAATACAGAGACGCCAA
66 CCCCGTCTAATACAGAGACGCCAA
* *
67877357 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTAACTTCGATTTGC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACG-CAAATCTGTTAACTTCGATCTGC
*
67877421 TCCCCGTCTAATACAGAGATGCCAA
65 TCCCCGTCTAATACAGAGACGCCAA
67877446 ATCT
1 ATCT
67877450 ATCATCTTGG
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
88 30 0.37
89 52 0.63
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (89 bp):
ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCAAATCTGTTAACTTCGATCTGCT
CCCCGTCTAATACAGAGACGCCAA
Found at i:67885639 original size:17 final size:18
Alignment explanation
Indices: 67885617--67885651 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
67885607 GATATGATAC
*
67885617 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
67885634 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
67885652 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:67885940 original size:22 final size:21
Alignment explanation
Indices: 67885905--67885980 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
67885895 AAAAGGTATC
* *
67885905 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
67885926 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
67885949 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
67885968 TGC-AATCATATCT
1 TACAAATCATATCT
67885981 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:67885997 original size:35 final size:37
Alignment explanation
Indices: 67885934--67886012 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
67885924 ATTACAAAAT
67885934 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
67885970 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
67886005 CATATCAT
1 CATATCAT
67886013 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:67886010 original size:14 final size:15
Alignment explanation
Indices: 67885955--67886010 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
67885945 AGATTGCATA
67885955 TCATATCTAAGATTG
1 TCATATCTAAGATTG
67885970 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
67885988 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
67886005 -CATATC
1 TCATATC
67886011 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:67886020 original size:17 final size:19
Alignment explanation
Indices: 67885941--67886012 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
67885931 AATCATATCT
67885941 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
67885960 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
67885978 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
67885995 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
67886013 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:67888877 original size:23 final size:23
Alignment explanation
Indices: 67888823--67888866 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
67888813 TAAAATGAAT
67888823 AATATTAAAATTAGACTTAAAAA
1 AATATTAAAATTAGACTTAAAAA
67888846 AATATTAAAATTAAGA-TTAAA
1 AATATTAAAATT-AGACTTAAA
67888867 TTAAAATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (23 bp):
AATATTAAAATTAGACTTAAAAA
Found at i:67890413 original size:48 final size:46
Alignment explanation
Indices: 67890312--67890432 Score: 158
Period size: 47 Copynumber: 2.6 Consensus size: 46
67890302 TTAATTGTGT
67890312 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGACCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGA-CACATTATGAGA
*
67890358 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-A-ACATTTAGATGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGACACA-TT--ATGAGA
*
67890406 GCTAGTGTAAGACATGTTTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
67890433 CATTGGCCTC
Statistics
Matches: 67, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
45 3 0.04
46 13 0.19
47 29 0.43
48 22 0.33
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGACACATTATGAGA
Found at i:67897395 original size:69 final size:70
Alignment explanation
Indices: 67897263--67897395 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
67897253 TAGTTTATTA
* * * * *
67897263 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
67897328 CTTAG
66 CTTAG
67897333 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
67897396 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 35 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:67898818 original size:47 final size:47
Alignment explanation
Indices: 67898767--67899275 Score: 822
Period size: 47 Copynumber: 10.7 Consensus size: 47
67898757 TTAGGATTCT
* * *
67898767 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
67898814 ATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
67898861 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
67898908 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
67898957 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
67899004 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
67899053 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
67899100 ATGTGATGAATGTGAAAGTATATATATGTGACAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
67899147 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
67899194 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
67899241 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
67899276 TCCCGAAGGG
Statistics
Matches: 434, Mismatches: 23, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 339 0.78
49 94 0.22
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:67902231 original size:47 final size:47
Alignment explanation
Indices: 67902112--67902382 Score: 196
Period size: 47 Copynumber: 5.7 Consensus size: 47
67902102 TTAATTGTGT
* * * * *
67902112 GCTAGTGTAAGA-CATGTCTGCGACAT-GCATCGGCGACATTATAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGAC-ATATGATGAGA
* * * ** *
67902158 GCCACTATAAGACCATGTCTAAGACATGGCATCGACATTTAGATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATAT-GATGAGA
* *
67902206 GCTAGTGTAAGA-CATGTTTGGGACATGGCGTCGGCACGGATATG-TGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-G-AC--ATATGATGAGA
* * * ** *
67902255 ACTAGTATAAGACCATGTCTGGGACATGGCGTCGACCTATATTTTGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-C-ATATGATGAGA
*
67902304 G-TCAGTGTAAGACTATGTCTGGGACATGGCATCGAC-T-TGATGGATGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACATATGAT-GA-GA
**
67902351 GCCGGTGTAAGACCATGTCTGGGACATGGCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT
67902383 TGGCATTATA
Statistics
Matches: 177, Mismatches: 34, Indels: 27
0.74 0.14 0.11
Matches are distributed among these distances:
45 2 0.01
46 12 0.07
47 59 0.33
48 29 0.16
49 52 0.29
50 20 0.11
51 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATATGATGAGA
Found at i:67905626 original size:43 final size:42
Alignment explanation
Indices: 67905591--67905714 Score: 135
Period size: 42 Copynumber: 2.9 Consensus size: 42
67905581 CTTAGATGTT
*
67905591 ATCACATAT-CGATGCCACTGTCCCAGACAGGGTCTTACACGA
1 ATCA-ATATACGATGCCAATGTCCCAGACAGGGTCTTACACGA
*
67905633 ATCAATATACGATGCCAATGTCCCAGACATGGTCTTACACGTA
1 ATCAATATACGATGCCAATGTCCCAGACAGGGTCTTACACG-A
* * * * * *
67905676 GTCACA-ATACAATTCCAATGTCTCAAACATGGTCTTACA
1 ATCA-ATATACGATGCCAATGTCCCAGACAGGGTCTTACA
67905715 TGTAATCACA
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
41 4 0.06
42 34 0.47
43 33 0.46
44 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.25
Consensus pattern (42 bp):
ATCAATATACGATGCCAATGTCCCAGACAGGGTCTTACACGA
Found at i:67905724 original size:43 final size:43
Alignment explanation
Indices: 67905576--67905724 Score: 160
Period size: 43 Copynumber: 3.5 Consensus size: 43
67905566 TATCCTAGAT
* * * *
67905576 ATGGTCTTAGATGTTATCAC-ATATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGTAATCACAATA-CGATGCCAATGTCCCAGAC
*
67905619 AGGGTCTTACACG-AATCA-ATATACGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACA-ATACGATGCCAATGTCCCAGAC
* * * * *
67905661 ATGGTCTTACACGTAGTCACAATACAATTCCAATGTCTCAAAC
1 ATGGTCTTACACGTAATCACAATACGATGCCAATGTCCCAGAC
*
67905704 ATGGTCTTACATGTAATCACA
1 ATGGTCTTACACGTAATCACA
67905725 TCTCAATAAC
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
42 34 0.38
43 54 0.61
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACAATACGATGCCAATGTCCCAGAC
Found at i:67915933 original size:13 final size:13
Alignment explanation
Indices: 67915915--67915943 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
67915905 TTCTTAATTC
67915915 CTCACAAGTGTAT
1 CTCACAAGTGTAT
67915928 CTCACAAGTGTAT
1 CTCACAAGTGTAT
67915941 CTC
1 CTC
67915944 TCAGTTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (13 bp):
CTCACAAGTGTAT
Found at i:67917758 original size:130 final size:133
Alignment explanation
Indices: 67917453--67917817 Score: 382
Period size: 134 Copynumber: 2.8 Consensus size: 133
67917443 CTCGCTTTGG
** * * * * * * * *
67917453 AAAACATGAGTGAAGTTCC-AATGGAACATTCGATCATTTTGAAGAAACGGGGAACCGCAGCCCA
1 AAAACATGAGTGAA-AACCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATCGCAACCCA
** * * *
67917517 GCACGATAGGGCACGATTCCTTGAATTGCCAAACATCGAACATTACATTCGTTTTAGAGTAATTT
65 GCACGATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCACATTCGTTTTAAAGTAA-TT
67917582 TTTTA
129 TTTTA
* * ** *
67917587 AAAACATGAGTGAAAACCTAAAGGAATATTCAACTGCTTTGAACCAACGAGAAATCGCAACCCAG
1 AAAACATGAGTGAAAACCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATCGCAACCCAG
* * *
67917652 CACGATAGGGCACGATTCC-CGAGTTGCCAAATATCGAACATCACCTTTG-TTTAAAG-AA-TTT
66 CACGATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCACATTCGTTTTAAAGTAATTTT
67917713 TTA
131 TTA
* * * * *
67917716 AAAGACATGGGTG-AAACTCTAAAGGGATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCC
1 AAA-ACATGAGTGAAAAC-CTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATCGCAACCC
* *
67917780 AACACGTTAGGGCACGATTCCGCGAATTGCCAAATATC
64 AGCACGATAGGGCACGATTCCGCGAATTGCCAAATATC
67917818 AAATCTCGTC
Statistics
Matches: 192, Mismatches: 35, Indels: 11
0.81 0.15 0.05
Matches are distributed among these distances:
129 13 0.07
130 64 0.33
131 17 0.09
132 6 0.03
133 26 0.14
134 66 0.34
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (133 bp):
AAAACATGAGTGAAAACCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATCGCAACCCAG
CACGATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCACATTCGTTTTAAAGTAATTTT
TTA
Found at i:67919666 original size:17 final size:18
Alignment explanation
Indices: 67919646--67919691 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 18
67919636 TTATTATGAG
67919646 TATTATTTT-TAATTATA
1 TATTATTTTATAATTATA
*
67919663 TATTATTATTACTTATTATA
1 TATTATT-TTA-TAATTATA
67919683 TATTATTTT
1 TATTATTTT
67919692 CCTTAAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 7 0.28
18 2 0.08
19 2 0.08
20 14 0.56
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (18 bp):
TATTATTTTATAATTATA
Found at i:67919670 original size:10 final size:10
Alignment explanation
Indices: 67919657--67919689 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
67919647 ATTATTTTTA
67919657 ATTATATATT
1 ATTATATATT
67919667 ATTAT-TACTT
1 ATTATATA-TT
67919677 ATTATATATT
1 ATTATATATT
67919687 ATT
1 ATT
67919690 TTCCTTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 2 0.10
10 17 0.81
11 2 0.10
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (10 bp):
ATTATATATT
Found at i:67919706 original size:3 final size:3
Alignment explanation
Indices: 67919630--67919689 Score: 50
Period size: 3 Copynumber: 19.0 Consensus size: 3
67919620 ATATTATAAA
* * *
67919630 ATT ATT -TT ATT ATG AGT ATT ATT TTT AATT ATAT ATT ATT ATT ACTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT AT-T ATT ATT ATT A-TT
67919677 ATT ATAT ATT ATT
1 ATT AT-T ATT ATT
67919690 TTCCTTAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
2 2 0.04
3 33 0.72
4 11 0.24
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:67919768 original size:45 final size:42
Alignment explanation
Indices: 67919661--67919771 Score: 106
Period size: 45 Copynumber: 2.6 Consensus size: 42
67919651 TTTTTAATTA
*
67919661 TATATTATT-ATTACTTAT-TATA-TATTATTTTCCTTAAAT
1 TATATTATTAATTACTTATATATATTATTATTTTCCATAAAT
* *
67919700 TATTATT-TTACATCT-CTTTTATATATTATTATATTTTCACATATAT
1 TA-TATTATTA-AT-TACTTATATATATTA-T-TATTTTC-CATAAAT
67919746 TATATTATTAATTACTTATATATATT
1 TATATTATTAATTACTTATATATATT
67919772 GTTTTATATC
Statistics
Matches: 57, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
39 4 0.07
40 4 0.07
41 6 0.11
42 5 0.09
43 2 0.04
44 2 0.04
45 24 0.42
46 10 0.18
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (42 bp):
TATATTATTAATTACTTATATATATTATTATTTTCCATAAAT
Found at i:67919769 original size:20 final size:20
Alignment explanation
Indices: 67919659--67919771 Score: 65
Period size: 20 Copynumber: 5.4 Consensus size: 20
67919649 TATTTTTAAT
67919659 TATATATTATT-ATTACTTA
1 TATATATTATTAATTACTTA
*
67919678 TTATATATTATT--TTCCTTA
1 -TATATATTATTAATTACTTA
* *
67919697 AAT-TATTATTTTACATCT-CTTT
1 TATATATTA--TTA-AT-TACTTA
*
67919719 TATATATTATTATATTTTCACATA
1 TATATATTATTA-A--TT-ACTTA
67919743 TATTATATTATTAATTACTTA
1 TA-TATATTATTAATTACTTA
67919764 TATATATT
1 TATATATT
67919772 GTTTTATATC
Statistics
Matches: 73, Mismatches: 8, Indels: 24
0.70 0.08 0.23
Matches are distributed among these distances:
17 5 0.07
18 2 0.03
19 8 0.11
20 17 0.23
21 10 0.14
22 9 0.12
23 7 0.10
24 5 0.07
25 10 0.14
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (20 bp):
TATATATTATTAATTACTTA
Found at i:67919780 original size:14 final size:14
Alignment explanation
Indices: 67919716--67919920 Score: 54
Period size: 14 Copynumber: 14.4 Consensus size: 14
67919706 TTTACATCTC
67919716 TTTTATATATTATTATA
1 TTTTATATA-TA-T-TA
*
67919733 TTTTCACATATATTA
1 TTTT-ATATATATTA
*
67919748 TATTAT-TA-ATTA
1 TTTTATATATATTA
* *
67919760 -CTTATATATATTG
1 TTTTATATATATTA
*
67919773 TTTTATATCTATTA
1 TTTTATATATATTA
*
67919787 TTTT-TCT-TA-TA
1 TTTTATATATATTA
*
67919798 TGTTTATAT-TA-CA
1 T-TTTATATATATTA
*
67919811 TTTTAT-TATATAA
1 TTTTATATATATTA
*
67919824 TCTTTAT-TATGTTTA
1 T-TTTATATAT-ATTA
67919839 TTTT-TATATTATTA
1 TTTTATATA-TATTA
* *
67919853 TTGTTTTTTATATATA
1 TT-TTATATATAT-TA
*
67919869 TGTTATGTATATCATGTA
1 T-TT-TATATAT-AT-TA
*** *
67919887 TCGCAAATTATATTA
1 TTTTATA-TATATTA
67919902 TTTTATATATATTA
1 TTTTATATATATTA
67919916 TTTTA
1 TTTTA
67919921 AAAATGTAAA
Statistics
Matches: 141, Mismatches: 28, Indels: 41
0.67 0.13 0.20
Matches are distributed among these distances:
11 8 0.06
12 18 0.13
13 16 0.11
14 45 0.32
15 19 0.13
16 11 0.08
17 15 0.11
18 9 0.06
ACGTcount: A:0.31, C:0.05, G:0.04, T:0.60
Consensus pattern (14 bp):
TTTTATATATATTA
Found at i:67919850 original size:20 final size:20
Alignment explanation
Indices: 67919827--67919867 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
67919817 TATATAATCT
*
67919827 TTATTA-TGTTTATTTTTATA
1 TTATTATTGTTT-TTTATATA
67919847 TTATTATTGTTTTTTATATA
1 TTATTATTGTTTTTTATATA
67919867 T
1 T
67919868 ATGTTATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (20 bp):
TTATTATTGTTTTTTATATA
Found at i:67920214 original size:12 final size:14
Alignment explanation
Indices: 67920180--67920209 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
67920170 TTAGCAATCA
*
67920180 ATTACTTTTTTTAT
1 ATTAGTTTTTTTAT
67920194 ATTAGTTTTTTTAT
1 ATTAGTTTTTTTAT
67920208 AT
1 AT
67920210 GTTTTATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.70
Consensus pattern (14 bp):
ATTAGTTTTTTTAT
Found at i:67920462 original size:21 final size:21
Alignment explanation
Indices: 67920423--67920463 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
67920413 TTTTTTTGCT
67920423 TCGTATGTATTATTCTTTATA
1 TCGTATGTATTATTCTTTATA
*
67920444 TCGTA-GTATTCATTTTTTAT
1 TCGTATGTATT-ATTCTTTAT
67920464 CTACCTAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.10, G:0.10, T:0.59
Consensus pattern (21 bp):
TCGTATGTATTATTCTTTATA
Found at i:67931978 original size:119 final size:119
Alignment explanation
Indices: 67931764--67932238 Score: 756
Period size: 119 Copynumber: 4.0 Consensus size: 119
67931754 AATTGAAGAC
*
67931764 AGCAGATCTAGACTTCAGACATTTATGCTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
1 AGCAGATCTAGACTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
* *
67931829 ACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTTAGACGTTCTCAAATAT
66 ACAAGAAACAAATCGAAGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
* * *
67931883 AGTAGATCTAGACTTCAGACATTTATGCTGAAGTAGATCCAAGATGATTTGGTATTCTTGTGTTT
1 AGCAGATCTAGACTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
*
67931948 ACAAGGAACAAATCGAAGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
66 ACAAGAAACAAATCGAAGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
**
67932002 AGCAGATCTA-ACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTT
1 AGCAGATCTAGA-CTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTT
*
67932066 TACAAGAAACAAATCG-AGAACATAGCAGATTTGACTCTTAGACGTTCTCAAATAT
65 TACAAGAAACAAATCGAAG-ACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
* ** *
67932121 AGCAGATCTAGCCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
1 AGCAGATCTAGACTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
* * * *
67932186 ACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAAATGTTCTCAAATA
66 ACAAGAAACAAATCGAAGACATAGCAGATTTGACTCTCAGACGTTCTCAAATA
67932239 GTCTCAAGAT
Statistics
Matches: 333, Mismatches: 19, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
118 3 0.01
119 329 0.99
120 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31
Consensus pattern (119 bp):
AGCAGATCTAGACTTCAGACATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
ACAAGAAACAAATCGAAGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
Done.