Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 204 of 344
Found at i:67932264 original size:83 final size:83
Alignment explanation
Indices: 67932160--67932510 Score: 522
Period size: 83 Copynumber: 4.2 Consensus size: 83
67932150 AAAGCAGATC
* * * * * *
67932160 CAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTAGCAGATATGACTCTCA
* *
67932225 AATGTTCTCAAATAGTCT
66 AATGTTCTCAAACAGACT
*
67932243 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACGTAGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTAGCAGATATGACTCTCA
*
67932308 AATGTTCTTAAACAGACT
66 AATGTTCTCAAACAGACT
* *
67932326 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAGGACGTAGTAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTAGCAGATATGACTCTCA
*
67932391 AATATTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * * *
67932409 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCAAGGACGTAGAAGATTTGACTCACA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTAGCAGATATGACTCTCA
67932474 AATGTTCTCAAAACAGACT
66 AATGTTCTC-AAACAGACT
* *
67932493 CAAGTTGATTTGGCATCC
1 CAAGATGGTTTGGCATCC
67932511 CCACAAATCG
Statistics
Matches: 244, Mismatches: 23, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
83 219 0.90
84 25 0.10
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTAGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:67934069 original size:17 final size:18
Alignment explanation
Indices: 67934049--67934094 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
67934039 TTATTATGAG
*
67934049 TATTATTTTTAATTA-TA
1 TATTATTATTAATTATTA
*
67934066 TATTATTATTACTTATTA
1 TATTATTATTAATTATTA
67934084 TATATATTATT
1 TAT-TATTATT
67934095 TTCCTTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 13 0.52
18 5 0.20
19 7 0.28
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
TATTATTATTAATTATTA
Found at i:67934212 original size:26 final size:23
Alignment explanation
Indices: 67934146--67934223 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 23
67934136 TATTTTCACA
*
67934146 TATATTATATTTATTA-ATTACT
1 TATATTATATCTATTATATTACT
* *
67934168 TATATATATATTGTTTTATACGTTACTT
1 TATAT-TATA-TCTATTATA--TTAC-T
* *
67934196 TATATTATATCTATTATTTTTCT
1 TATATTATATCTATTATATTACT
67934219 TATAT
1 TATAT
67934224 GTTTATATTA
Statistics
Matches: 44, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
22 5 0.11
23 10 0.23
24 8 0.18
25 1 0.02
26 6 0.14
27 8 0.18
28 6 0.14
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (23 bp):
TATATTATATCTATTATATTACT
Found at i:67934276 original size:18 final size:18
Alignment explanation
Indices: 67934251--67934299 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
67934241 TTATATAATC
67934251 TTTATTATGTT-TTATTT
1 TTTATTATGTTATTATTT
*
67934268 TTATATTAT-TTATTGTTT
1 TT-TATTATGTTATTATTT
67934286 TTTATATATGTTAT
1 TTTAT-TATGTTAT
67934300 GTATATCATG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 7 0.26
18 16 0.59
19 4 0.15
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.71
Consensus pattern (18 bp):
TTTATTATGTTATTATTT
Found at i:67934883 original size:21 final size:21
Alignment explanation
Indices: 67934844--67934884 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
67934834 TTTTTTTGCT
67934844 TCGTATGTATTATTCTTTATA
1 TCGTATGTATTATTCTTTATA
*
67934865 TCGTA-GTATTCATTTTTTAT
1 TCGTATGTATT-ATTCTTTAT
67934885 CTACCTAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.10, G:0.10, T:0.59
Consensus pattern (21 bp):
TCGTATGTATTATTCTTTATA
Found at i:67935544 original size:20 final size:20
Alignment explanation
Indices: 67935519--67935558 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
67935509 TGAAAATGGT
67935519 TTCGACAATATATATATGTA
1 TTCGACAATATATATATGTA
67935539 TTCGACAATATATATATGTA
1 TTCGACAATATATATATGTA
67935559 AAAAAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (20 bp):
TTCGACAATATATATATGTA
Found at i:67937491 original size:22 final size:22
Alignment explanation
Indices: 67937451--67937492 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
67937441 TGCCATTAGC
* *
67937451 TTGTTTTTTTTTCTATTTGCTG
1 TTGTTTTCTTGTCTATTTGCTG
*
67937473 TTGTTTTCTTGTCTGTTTGC
1 TTGTTTTCTTGTCTATTTGC
67937493 AGGTGTGCGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.02, C:0.12, G:0.17, T:0.69
Consensus pattern (22 bp):
TTGTTTTCTTGTCTATTTGCTG
Found at i:67942842 original size:21 final size:20
Alignment explanation
Indices: 67942818--67942860 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
67942808 TAAATGATGG
67942818 TATTAGAAATATACGATATAA
1 TATTAGAAATATAC-ATATAA
* *
67942839 TATTAGAAGTATACATGTAA
1 TATTAGAAATATACATATAA
67942859 TA
1 TA
67942861 GTATATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.49, C:0.05, G:0.12, T:0.35
Consensus pattern (20 bp):
TATTAGAAATATACATATAA
Found at i:67942928 original size:26 final size:25
Alignment explanation
Indices: 67942881--67942967 Score: 79
Period size: 26 Copynumber: 3.4 Consensus size: 25
67942871 AATATAACTA
*
67942881 ATAATATTAAAAAATATGTATAAAAT
1 ATAATATTAAAAAAT-TATATAAAAT
*
67942907 ATAATATTAAAAAACTTATAT-ACAT
1 ATAATATTAAAAAA-TTATATAAAAT
* * *
67942932 A-ACATATATAAAAAAATACATATAAT
1 ATA-ATAT-TAAAAAATTATATAAAAT
67942958 ATAATATTAA
1 ATAATATTAA
67942968 GACATTTACA
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
24 1 0.02
25 15 0.30
26 32 0.64
27 2 0.04
ACGTcount: A:0.61, C:0.05, G:0.01, T:0.33
Consensus pattern (25 bp):
ATAATATTAAAAAATTATATAAAAT
Found at i:67943024 original size:12 final size:12
Alignment explanation
Indices: 67943007--67943038 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
67942997 AAATAACATC
67943007 TAATAATATTAA
1 TAATAATATTAA
67943019 TAATAATATTAA
1 TAATAATATTAA
*
67943031 AAATAATA
1 TAATAATA
67943039 ATGAAATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TAATAATATTAA
Found at i:67943138 original size:13 final size:14
Alignment explanation
Indices: 67943120--67943150 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
67943110 ATGTATGAAT
67943120 ATATACATATA-TA
1 ATATACATATATTA
67943133 ATATACATATATTA
1 ATATACATATATTA
67943147 ATAT
1 ATAT
67943151 TGATAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:67943206 original size:195 final size:195
Alignment explanation
Indices: 67942988--67943388 Score: 793
Period size: 195 Copynumber: 2.1 Consensus size: 195
67942978 TAATATACAT
67942988 ATTAGGAATAAATAACATCTAATAATATTAATAATAATATTAAAAATAATAATGAAATATATAAA
1 ATTAGGAATAAATAACATCTAATAATATTAATAATAATATTAAAAATAATAATGAAATATATAAA
67943053 AACAAATATGATATAACAATAATATTAAAATAAAGTAATTAAAATAGTACTATATAAATGTATGA
66 AACAAATATGATATAACAATAATATTAAAATAAAGTAATTAAAATAGTACTATATAAATGTATGA
67943118 ATATATACATATATAATATACATATATTAATATTGATAATAATGCTAAAACTAGAAATAACAATC
131 ATATATACATATATAATATACATATATTAATATTGATAATAATGCTAAAACTAGAAATAACAATC
67943183 ATTAGGAATAAATAACATCTAATAATATTAATAATAATATTAAAAATAATAATGAAATATATAAA
1 ATTAGGAATAAATAACATCTAATAATATTAATAATAATATTAAAAATAATAATGAAATATATAAA
67943248 AACAAATATGATATAACAATAATATTAAAATAAAGTAATTAAAATAGTACTATATAAATGTATGA
66 AACAAATATGATATAACAATAATATTAAAATAAAGTAATTAAAATAGTACTATATAAATGTATGA
67943313 ATATATACATATATAATATACATATATTAATATTGATAATAATGCTAAAACTAGAAATAACAATC
131 ATATATACATATATAATATACATATATTAATATTGATAATAATGCTAAAACTAGAAATAACAATC
*
67943378 ATTAGTAATAA
1 ATTAGGAATAA
67943389 TAATACTTAA
Statistics
Matches: 205, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
195 205 1.00
ACGTcount: A:0.56, C:0.05, G:0.06, T:0.32
Consensus pattern (195 bp):
ATTAGGAATAAATAACATCTAATAATATTAATAATAATATTAAAAATAATAATGAAATATATAAA
AACAAATATGATATAACAATAATATTAAAATAAAGTAATTAAAATAGTACTATATAAATGTATGA
ATATATACATATATAATATACATATATTAATATTGATAATAATGCTAAAACTAGAAATAACAATC
Found at i:67943219 original size:12 final size:12
Alignment explanation
Indices: 67943202--67943233 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
67943192 AAATAACATC
67943202 TAATAATATTAA
1 TAATAATATTAA
67943214 TAATAATATTAA
1 TAATAATATTAA
*
67943226 AAATAATA
1 TAATAATA
67943234 ATGAAATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TAATAATATTAA
Found at i:67943333 original size:13 final size:14
Alignment explanation
Indices: 67943315--67943345 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
67943305 ATGTATGAAT
67943315 ATATACATATA-TA
1 ATATACATATATTA
67943328 ATATACATATATTA
1 ATATACATATATTA
67943342 ATAT
1 ATAT
67943346 TGATAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:67943423 original size:21 final size:22
Alignment explanation
Indices: 67943386--67943428 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
67943376 TCATTAGTAA
67943386 TAATAATACTTAAAAAAATAAT
1 TAATAATACTTAAAAAAATAAT
67943408 TAAT-ATA-TTAATAAAAATAAT
1 TAATAATACTTAA-AAAAATAAT
67943429 AGTAACAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 12 0.60
22 4 0.20
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (22 bp):
TAATAATACTTAAAAAAATAAT
Found at i:67950139 original size:40 final size:40
Alignment explanation
Indices: 67950055--67950241 Score: 220
Period size: 40 Copynumber: 4.7 Consensus size: 40
67950045 TTTGAATGAT
* * * *
67950055 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCAT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAA
** *
67950095 ATCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAA
67950135 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
*
67950175 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA-A
* *
67950216 AT-CGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGTTAAGTCCCGAAGGCATTTG
67950242 AACGATGAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
39 1 0.01
40 117 0.89
41 13 0.10
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
Found at i:67950259 original size:80 final size:79
Alignment explanation
Indices: 67950109--67950274 Score: 201
Period size: 80 Copynumber: 2.1 Consensus size: 79
67950099 GGACTAAGAT
* * **
67950109 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGATACTA
*
67950174 AATCCGGGTTAAGTC
66 AATCC-GGTTAAATC
* * *
67950189 CCGAAGGCATTTGTGCGAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTTGAACGATGA-GC
1 CCGAAGGCATTTGTGCGAGATACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGA-GATAC
* *
67950252 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
67950268 CCGAAGG
1 CCGAAGG
67950275 TACGTGATTT
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
79 14 0.19
80 55 0.74
81 5 0.07
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGATACTA
AATCCGGTTAAATC
Found at i:67955034 original size:10 final size:11
Alignment explanation
Indices: 67955006--67955035 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
67954996 GTATTCAAAA
67955006 ATAAATAAAGG
1 ATAAATAAAGG
67955017 ATAAATAAAGG
1 ATAAATAAAGG
67955028 A-AAATAAA
1 ATAAATAAA
67955036 ATTAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.37
11 12 0.63
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (11 bp):
ATAAATAAAGG
Found at i:67955057 original size:13 final size:13
Alignment explanation
Indices: 67955028--67955067 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
67955018 TAAATAAAGG
*
67955028 AAAATAA-AATTA
1 AAAATAATAATAA
*
67955040 AAAATAGTAATAA
1 AAAATAATAATAA
67955053 AAAATAATAATAA
1 AAAATAATAATAA
67955066 AA
1 AA
67955068 TAAAGGGACT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
12 6 0.25
13 18 0.75
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (13 bp):
AAAATAATAATAA
Found at i:67962959 original size:19 final size:20
Alignment explanation
Indices: 67962935--67962972 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
67962925 GGTACCACCA
67962935 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
67962954 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
67962973 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:67963369 original size:46 final size:46
Alignment explanation
Indices: 67963197--67963369 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
67963187 AACCCGCCCC
* * *
67963197 TAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCATCCA
* * *
67963243 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * * *
67963291 TCA-CGAAGTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
67963336 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67963370 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 56 0.54
47 27 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:67973245 original size:42 final size:42
Alignment explanation
Indices: 67973178--67973290 Score: 156
Period size: 42 Copynumber: 2.7 Consensus size: 42
67973168 TAATATACCA
* * * *
67973178 ATGCCATATCCCAGATATGATCTTACATGAGATCTCATATCG
1 ATGCCATAGCCCAGATATGGTCTTACACGAAATCTCATATCG
*
67973220 ATGCCAATAGCCCAGCTATGG-CTTACACGAAATCTCATATCG
1 ATGCC-ATAGCCCAGATATGGTCTTACACGAAATCTCATATCG
*
67973262 ATGCCATATCCCAGATATGGTCTTACACG
1 ATGCCATAGCCCAGATATGGTCTTACACG
67973291 TAAACTCTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
41 13 0.21
42 37 0.60
43 12 0.19
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (42 bp):
ATGCCATAGCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:67977289 original size:4 final size:4
Alignment explanation
Indices: 67977280--67977309 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
67977270 TTTGCCATGT
67977280 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
67977310 CACTTATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:67987499 original size:19 final size:19
Alignment explanation
Indices: 67987475--67987565 Score: 125
Period size: 19 Copynumber: 4.9 Consensus size: 19
67987465 AATCATATCT
*
67987475 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
67987494 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
67987512 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
67987529 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
* *
67987548 TCTAATATTGCAAATCAT
1 TCTAAGATTGCATATCAT
67987566 TGAAGATTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 32 0.50
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:67987533 original size:35 final size:37
Alignment explanation
Indices: 67987475--67987557 Score: 125
Period size: 35 Copynumber: 2.3 Consensus size: 37
67987465 AATCATATCT
*
67987475 TCTAAGATTGTATATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATATCACA
67987512 TCTAAGATTG-TATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGATATCATATCTAAGATTGCATATCACA
*
67987548 TCTAATATTG
1 TCTAAGATTG
67987558 CAAATCATTG
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
35 19 0.44
36 14 0.33
37 10 0.23
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATATCACA
Found at i:67987544 original size:14 final size:15
Alignment explanation
Indices: 67987489--67987544 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
67987479 AGATTGTATA
67987489 TCATATCTAAGATTG
1 TCATATCTAAGATTG
67987504 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
67987522 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
67987539 -CATATC
1 TCATATC
67987545 ACATCTAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:67989542 original size:17 final size:17
Alignment explanation
Indices: 67989520--67989552 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
67989510 GTATCTTGCA
67989520 ATCATATCTAAGATTGT
1 ATCATATCTAAGATTGT
67989537 ATCATATCTAAGATTG
1 ATCATATCTAAGATTG
67989553 CAATTGTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (17 bp):
ATCATATCTAAGATTGT
Found at i:67992256 original size:30 final size:30
Alignment explanation
Indices: 67992220--67992281 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
67992210 TTAATTAATG
67992220 TAAACTTTGGAAAAATTACACTTTTTCCCC
1 TAAACTTTGGAAAAATTACACTTTTTCCCC
* * * *
67992250 TAAACTTTTGCATATTTACACTTTTTCCCC
1 TAAACTTTGGAAAAATTACACTTTTTCCCC
67992280 TA
1 TA
67992282 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.29, C:0.24, G:0.05, T:0.42
Consensus pattern (30 bp):
TAAACTTTGGAAAAATTACACTTTTTCCCC
Found at i:67993087 original size:49 final size:49
Alignment explanation
Indices: 67993033--67993131 Score: 153
Period size: 49 Copynumber: 2.0 Consensus size: 49
67993023 ATTTTTATTT
** * *
67993033 CAGATTTTGTGATCCCGAAACCTCTGTTGCAACTAGACCCAATTTTGGG
1 CAGATTTTGTGATCCCGAAACCTCCATTCCAACTAGACCCAATTTGGGG
*
67993082 CAGATTTTGTGGTCCCGAAACCTCCATTCCAACTAGACCCAATTTGGGG
1 CAGATTTTGTGATCCCGAAACCTCCATTCCAACTAGACCCAATTTGGGG
67993131 C
1 C
67993132 TATTACATCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.28
Consensus pattern (49 bp):
CAGATTTTGTGATCCCGAAACCTCCATTCCAACTAGACCCAATTTGGGG
Found at i:67993186 original size:35 final size:35
Alignment explanation
Indices: 67993140--67993228 Score: 160
Period size: 35 Copynumber: 2.5 Consensus size: 35
67993130 GCTATTACAT
67993140 CAATCATATCTAAGATTGTATCATATCTAAGATTG
1 CAATCATATCTAAGATTGTATCATATCTAAGATTG
67993175 CAATCATATCTAAGATTGTATCATATCTAAGATTG
1 CAATCATATCTAAGATTGTATCATATCTAAGATTG
*
67993210 CATATCACATCTAAGATTG
1 CA-ATCATATCTAAGATTG
67993229 CATATCATTG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
35 37 0.71
36 15 0.29
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36
Consensus pattern (35 bp):
CAATCATATCTAAGATTGTATCATATCTAAGATTG
Found at i:67993221 original size:19 final size:19
Alignment explanation
Indices: 67993142--67993236 Score: 146
Period size: 17 Copynumber: 5.3 Consensus size: 19
67993132 TATTACATCA
67993142 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
67993159 ATCATATCTAAGATTGCA-
1 ATCATATCTAAGATTGCAT
67993177 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
67993194 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
67993213 ATCACATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
67993232 ATCAT
1 ATCAT
67993237 TGAATATTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
17 32 0.45
18 16 0.23
19 23 0.32
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:67996905 original size:43 final size:43
Alignment explanation
Indices: 67996847--67997017 Score: 218
Period size: 43 Copynumber: 4.0 Consensus size: 43
67996837 TATCGAAATG
*
67996847 TGATATACAGGCTTCGGGCCTAGCAGGCTATAATGCCGATGAAA
1 TGATAT-CGGGCTTCGGGCCTAGCAGGCTATAATGCCGATGAAA
* * *
67996891 TGATATCGGGCTTCGGGCCTAGCAAGCTATAATGCCGGTGAGA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGATGAAA
* * * *
67996934 TAATATCGGGCCTCGGGCCTAGCAGGCTATAAAGCCGGTGAAA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGATGAAA
** * *
67996977 TGATATCGGGCTTCAAGCCTAACAGGCGA-AATGCCGATGAA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGATGAA
67997018 TGAATTCAGA
Statistics
Matches: 110, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 10 0.09
43 94 0.85
44 6 0.05
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (43 bp):
TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGATGAAA
Found at i:68000201 original size:39 final size:39
Alignment explanation
Indices: 68000148--68000271 Score: 176
Period size: 39 Copynumber: 3.2 Consensus size: 39
68000138 GGACTTTAGC
* * *
68000148 CCAGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCAGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
* *
68000187 CCAGTTATAATTCCAGCACATAGCTTGCGGACCTTAAGT
1 CCAGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
* *
68000226 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCAGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
*
68000265 CCGGATA
1 CCAGATA
68000272 AACATCACTG
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (39 bp):
CCAGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
Found at i:68007579 original size:43 final size:43
Alignment explanation
Indices: 68007521--68007691 Score: 227
Period size: 43 Copynumber: 4.0 Consensus size: 43
68007511 TATCGAAATG
* *
68007521 TGATATACAGGCTTCGGGCCTAGCAGGCTATAATGCCGATGAAA
1 TGATAT-CGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
* *
68007565 TGATATCGGGCTTCGGGCCTAGCAAGCTATAATGCCGGTGAGA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
68007608 TAATATCGGGCCTCGGGCCTAGCAGGCTATAAAGCCGGTGAAA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
** * *
68007651 TGATATCGGGCTTCAAGCCTAGCAGGCGA-AATGCTGGTGAA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAA
68007692 TGAATTCAGA
Statistics
Matches: 111, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 10 0.09
43 95 0.86
44 6 0.05
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (43 bp):
TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:68009932 original size:43 final size:43
Alignment explanation
Indices: 68009877--68010164 Score: 189
Period size: 43 Copynumber: 6.7 Consensus size: 43
68009867 AAACGATGAG
** *
68009877 TCTTAAACCCCTAAGCAGTAGGGTAACTGGCTGAATTTACAAA
1 TCTTAAACCCCTAAGCAGTAGGGTAACAAGATGAATTTACAAA
*
68009920 TCTTAAACCCCTAAGCAGTAGGGTAACAAGATGAATTTACAGA
1 TCTTAAACCCCTAAGCAGTAGGGTAACAAGATGAATTTACAAA
* ** * * ** *
68009963 TCTTAACCCCCTAAGTGGTAGGGAAAC-AGATCAA-AGAC-GA
1 TCTTAAACCCCTAAGCAGTAGGGTAACAAGATGAATTTACAAA
* * * *
68010003 TGGGCCTTAAACCCCTAAGTAGTAGGGTAACAGGTTGAATTTACAGA
1 T----CTTAAACCCCTAAGCAGTAGGGTAACAAGATGAATTTACAAA
* * *
68010050 TCTT-AACCCTCTAAGTAGTAGGG-AA-ATAGATCGAA--GAC-GA
1 TCTTAAACCC-CTAAGCAGTAGGGTAACA-AGAT-GAATTTACAAA
* * * *
68010090 TGGGCCTTGAACCCCTAAACAGTAGGGTAACAAGTTGAATTTACACA
1 T----CTTAAACCCCTAAGCAGTAGGGTAACAAGATGAATTTACAAA
* *
68010137 TCTTAACCCCCTAAGCAGTAGGGAAACA
1 TCTTAAACCCCTAAGCAGTAGGGTAACA
68010165 GATCGAAGGT
Statistics
Matches: 194, Mismatches: 31, Indels: 40
0.73 0.12 0.15
Matches are distributed among these distances:
40 6 0.03
41 5 0.03
42 15 0.08
43 104 0.54
44 40 0.21
45 14 0.07
46 5 0.03
47 5 0.03
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (43 bp):
TCTTAAACCCCTAAGCAGTAGGGTAACAAGATGAATTTACAAA
Found at i:68010014 original size:87 final size:87
Alignment explanation
Indices: 68009921--68010210 Score: 454
Period size: 87 Copynumber: 3.3 Consensus size: 87
68009911 ATTTACAAAT
* *
68009921 CTTAAACCCCTAAGCAGTAGGGTAACAAGATGAATTTACAGATCTTAACCCCCTAAGTGGTAGGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAAGTTGAATTTACAGATCTTAACCCCCTAAGTAGTAGGG
*
68009986 AAACAGATCAAAGACGATGGGC
66 AAACAGATCGAAGACGATGGGC
* * *
68010008 CTTAAACCCCTAAGTAGTAGGGTAACAGGTTGAATTTACAGATCTTAACCCTCTAAGTAGTAGGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAAGTTGAATTTACAGATCTTAACCCCCTAAGTAGTAGGG
*
68010073 AAATAGATCGAAGACGATGGGC
66 AAACAGATCGAAGACGATGGGC
* * * *
68010095 CTTGAACCCCTAAACAGTAGGGTAACAAGTTGAATTTACACATCTTAACCCCCTAAGCAGTAGGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAAGTTGAATTTACAGATCTTAACCCCCTAAGTAGTAGGG
**
68010160 AAACAGATCGAAGGTGATGGGC
66 AAACAGATCGAAGACGATGGGC
*
68010182 CTTAAACCCCTATGCAGTAGGGTAACAAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAAG
68010211 CTGGAAATTA
Statistics
Matches: 183, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 183 1.00
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.21
Consensus pattern (87 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAAGTTGAATTTACAGATCTTAACCCCCTAAGTAGTAGGG
AAACAGATCGAAGACGATGGGC
Found at i:68010045 original size:130 final size:130
Alignment explanation
Indices: 68009823--68010072 Score: 378
Period size: 130 Copynumber: 1.9 Consensus size: 130
68009813 TAACAGGCTT
* *
68009823 AATTTACAGATCTTAACCCTCTAAGCAGTAGGGAAACAGATCGAAAACGATGAGTCTTAAACCCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAAACGATGAGCCTTAAACCCC
*
68009888 TAAGCAGTAGGGTAACTGGCTGAATTTACAAATCTTAAACCC-CTAAGCAGTAGGGTAACAAGAT
66 TAAGCAGTAGGGTAACAGGCTGAATTTACAAATCTT-AACCCTCTAAGCAGTAGGGTAACAAGAT
68009952 G
130 G
** *
68009953 AATTTACAGATCTTAACCCCCTAAGTGGTAGGGAAACAGATC-AAAGACGATGGGCCTTAAACCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAA-ACGATGAGCCTTAAACCC
* * * *
68010017 CTAAGTAGTAGGGTAACAGGTTGAATTTACAGATCTTAACCCTCTAAGTAGTAGGG
65 CTAAGCAGTAGGGTAACAGGCTGAATTTACAAATCTTAACCCTCTAAGCAGTAGGG
68010073 AAATAGATCG
Statistics
Matches: 108, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
129 8 0.07
130 100 0.93
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (130 bp):
AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAAACGATGAGCCTTAAACCCC
TAAGCAGTAGGGTAACAGGCTGAATTTACAAATCTTAACCCTCTAAGCAGTAGGGTAACAAGATG
Found at i:68011096 original size:19 final size:18
Alignment explanation
Indices: 68011054--68011096 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
68011044 AAGGTGATTG
68011054 TTTTTTATTTATTATTTC
1 TTTTTTATTTATTATTTC
* * *
68011072 ATTTTTATTTTTTTCTTTC
1 TTTTTTA-TTTATTATTTC
68011091 TTTTTT
1 TTTTTT
68011097 TTGAATACAT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTTTATTTATTATTTC
Found at i:68011779 original size:25 final size:27
Alignment explanation
Indices: 68011750--68011802 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
68011740 ATTTTATTTT
68011750 AATTTCA-A-TATTATATATACTATTA
1 AATTTCATATTATTATATATACTATTA
* *
68011775 AATTTTATTATTATTATATTTACTATTA
1 AATTTCA-TATTATTATATATACTATTA
68011803 GCCTTAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 6 0.26
27 1 0.04
28 16 0.70
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.55
Consensus pattern (27 bp):
AATTTCATATTATTATATATACTATTA
Found at i:68012060 original size:35 final size:36
Alignment explanation
Indices: 68011978--68012060 Score: 96
Period size: 36 Copynumber: 2.3 Consensus size: 36
68011968 TTATGCATAA
* * *
68011978 ATTTTTTTACTACGCATATATATCTTTTAATATTAT
1 ATTTTTTTATTACGCATATATATCTTTTAATACTAC
* * *
68012014 ATTTTCATTATTATGTATATATAT-TTTTAATACTAC
1 ATTTT-TTTATTACGCATATATATCTTTTAATACTAC
68012050 ATTTTTTTATT
1 ATTTTTTTATT
68012061 TTCTATTATT
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
35 5 0.13
36 20 0.51
37 14 0.36
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.59
Consensus pattern (36 bp):
ATTTTTTTATTACGCATATATATCTTTTAATACTAC
Found at i:68012336 original size:14 final size:15
Alignment explanation
Indices: 68012317--68012346 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
68012307 TTCATTGTCA
68012317 TTGTCAT-TTTTATT
1 TTGTCATGTTTTATT
68012331 TTGTCATGTTTTATT
1 TTGTCATGTTTTATT
68012346 T
1 T
68012347 ATTTTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.13, C:0.07, G:0.10, T:0.70
Consensus pattern (15 bp):
TTGTCATGTTTTATT
Found at i:68023790 original size:34 final size:34
Alignment explanation
Indices: 68023742--68023820 Score: 149
Period size: 34 Copynumber: 2.3 Consensus size: 34
68023732 CCCTTGAATC
*
68023742 ATGCACTCATCGAAAGCAGCTCTTACCCACAATA
1 ATGCCCTCATCGAAAGCAGCTCTTACCCACAATA
68023776 ATGCCCTCATCGAAAGCAGCTCTTACCCACAATA
1 ATGCCCTCATCGAAAGCAGCTCTTACCCACAATA
68023810 ATGCCCTCATC
1 ATGCCCTCATC
68023821 TTGGAATGAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.32, C:0.35, G:0.11, T:0.22
Consensus pattern (34 bp):
ATGCCCTCATCGAAAGCAGCTCTTACCCACAATA
Found at i:68029860 original size:34 final size:34
Alignment explanation
Indices: 68029789--68029860 Score: 81
Period size: 34 Copynumber: 2.1 Consensus size: 34
68029779 TAAATTAAAT
* * * * * *
68029789 TATATTTATTGATCATATAATTGTGTTGTAAAGA
1 TATATTTATTGAACATAAAATTATCTTATAAAAA
*
68029823 TATATTTTTTGAACATAAAATTATCTTATAAAAA
1 TATATTTATTGAACATAAAATTATCTTATAAAAA
68029857 TATA
1 TATA
68029861 ACTTTACATA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.42, C:0.04, G:0.08, T:0.46
Consensus pattern (34 bp):
TATATTTATTGAACATAAAATTATCTTATAAAAA
Found at i:68030333 original size:20 final size:20
Alignment explanation
Indices: 68030308--68030348 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
68030298 ATTAAGAAAG
*
68030308 TAAGATAAGATTTTTTAACT
1 TAAGATAAGATATTTTAACT
68030328 TAAGATAAGATATTTTAACT
1 TAAGATAAGATATTTTAACT
68030348 T
1 T
68030349 CTAATATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (20 bp):
TAAGATAAGATATTTTAACT
Found at i:68033237 original size:146 final size:146
Alignment explanation
Indices: 68033046--68033344 Score: 508
Period size: 146 Copynumber: 2.0 Consensus size: 146
68033036 ATTATATTTG
* * * *
68033046 ATATATACTTATTTTTGTGCAGTCTCCTAATGAGTTGTGTCAGTGATATTTTACTAAGGATGGAT
1 ATATATAATTACTTTTGTGCACTCTCATAATGAGTTGTGTCAGTGATATTTTACTAAGGATGGAT
* * *
68033111 AGTTGAAAGTCTCATAGTTATGTGAACAATAATATTTAAGAATTCACTAAATAGTAAAAAGATGG
66 AGTTGAAAGTCTCATAGTTATGTAAACAATAACATTTAAGAATTCACTAAATAGTAAAAAGATGA
68033176 ATGAATGAGCATATTA
131 ATGAATGAGCATATTA
* *
68033192 ATATATAATTACTTTTGTGCACTCTCATATTGAGTTGTGTTAGTGATATTTTACTAAGGATGGAT
1 ATATATAATTACTTTTGTGCACTCTCATAATGAGTTGTGTCAGTGATATTTTACTAAGGATGGAT
*
68033257 AGTTGAAGGTCTCATAGTTATGTAAACAATAACATTTAAGAATTCACTAAATAGTAAAAAGATGA
66 AGTTGAAAGTCTCATAGTTATGTAAACAATAACATTTAAGAATTCACTAAATAGTAAAAAGATGA
68033322 ATGAATGAGCATATTA
131 ATGAATGAGCATATTA
68033338 ATATATA
1 ATATATA
68033345 TTGTATCTTG
Statistics
Matches: 143, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
146 143 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.36
Consensus pattern (146 bp):
ATATATAATTACTTTTGTGCACTCTCATAATGAGTTGTGTCAGTGATATTTTACTAAGGATGGAT
AGTTGAAAGTCTCATAGTTATGTAAACAATAACATTTAAGAATTCACTAAATAGTAAAAAGATGA
ATGAATGAGCATATTA
Found at i:68036518 original size:8 final size:8
Alignment explanation
Indices: 68036505--68036585 Score: 54
Period size: 9 Copynumber: 9.2 Consensus size: 8
68036495 GTATTCAAGT
68036505 TTTTTTAA
1 TTTTTTAA
68036513 TTTTTTTTACA
1 --TTTTTTA-A
*
68036524 ATTTTTAA
1 TTTTTTAA
68036532 TATTTTTGAA
1 T-TTTTT-AA
68036542 TTTTTATAA
1 TTTTT-TAA
* *
68036551 TTTTATAT
1 TTTTTTAA
*
68036559 TTTTTTAC
1 TTTTTTAA
68036567 TTTTTATAA
1 TTTTT-TAA
*
68036576 TATTTTAA
1 TTTTTTAA
68036584 TT
1 TT
68036586 AGTTACTGAT
Statistics
Matches: 57, Mismatches: 9, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
8 18 0.32
9 27 0.47
10 11 0.19
11 1 0.02
ACGTcount: A:0.27, C:0.02, G:0.01, T:0.69
Consensus pattern (8 bp):
TTTTTTAA
Found at i:68037637 original size:28 final size:28
Alignment explanation
Indices: 68037597--68037653 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
68037587 TCAAGGATTT
68037597 GTCCACTACGATGGTGATAAAACTCTTG
1 GTCCACTACGATGGTGATAAAACTCTTG
*
68037625 GTCCACTACGATGGTGCTAAAACTCTTG
1 GTCCACTACGATGGTGATAAAACTCTTG
68037653 G
1 G
68037654 GGAGGAGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (28 bp):
GTCCACTACGATGGTGATAAAACTCTTG
Found at i:68046160 original size:25 final size:26
Alignment explanation
Indices: 68046131--68046179 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
68046121 CTTATTTCAT
68046131 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAATATAA
* *
68046156 TAAATCAAATATATTTAAAAATAT
1 TAAATAAAAAATATTTAAAAATAT
68046180 TAAAACAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (26 bp):
TAAATAAAAAATATTTAAAAATATAA
Found at i:68046188 original size:24 final size:25
Alignment explanation
Indices: 68046143--68046191 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
68046133 AATAAAAAAT
*
68046143 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAATAT-ATAAAACAAATATA
68046169 TTTAAAAATAT-TAAAACAAATAT
1 TTTAAAAATATATAAAACAAATAT
68046192 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 11 0.50
26 11 0.50
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (25 bp):
TTTAAAAATATATAAAACAAATATA
Found at i:68046189 original size:12 final size:12
Alignment explanation
Indices: 68046174--68046202 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
68046164 ATATATTTAA
68046174 AAATATTAAAAC
1 AAATATTAAAAC
68046186 AAATATTAAAAC
1 AAATATTAAAAC
68046198 AAATA
1 AAATA
68046203 AAAATAATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (12 bp):
AAATATTAAAAC
Found at i:68049976 original size:22 final size:20
Alignment explanation
Indices: 68049951--68049999 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
68049941 TTTAGAAAAT
68049951 TTTAAAATTTATTTATATATTC
1 TTTAAAATTT-TTTAT-TATTC
* *
68049973 TTTAGAATTTTTTATTATTT
1 TTTAAAATTTTTTATTATTC
68049993 TTTAAAA
1 TTTAAAA
68050000 ATATAAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 10 0.42
21 5 0.21
22 9 0.38
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTAAAATTTTTTATTATTC
Found at i:68050037 original size:19 final size:20
Alignment explanation
Indices: 68050013--68050059 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 20
68050003 TAAATTTTAG
68050013 AATTTTTTTAAATAT-TTTT
1 AATTTTTTTAAATATATTTT
** *
68050032 AA-TTTTAAAAATTTATTTT
1 AATTTTTTTAAATATATTTT
68050051 AATTTTTTT
1 AATTTTTTT
68050060 GTAAGTTTTG
Statistics
Matches: 21, Mismatches: 5, Indels: 3
0.72 0.17 0.10
Matches are distributed among these distances:
18 9 0.43
19 8 0.38
20 4 0.19
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (20 bp):
AATTTTTTTAAATATATTTT
Found at i:68050058 original size:28 final size:27
Alignment explanation
Indices: 68049948--68050059 Score: 66
Period size: 28 Copynumber: 4.0 Consensus size: 27
68049938 TATTTTAGAA
*
68049948 AATTTTAAAATTTATTTATATATTCTTT
1 AATTTTAAAATTTATTTAAATATT-TTT
** * * *
68049976 AGAATTTTTTATTATTT-TTTAAA-AATATA
1 --AA--TTTTAAAATTTATTTAAATATTTTT
* *
68050005 AATTTTAGAATTTTTTTAAATATTTTT
1 AATTTTAAAATTTATTTAAATATTTTT
* *
68050032 AATTTTAAAAATTTATTTTAATTTTTTT
1 AATTTT-AAAATTTATTTAAATATTTTT
68050060 GTAAGTTTTG
Statistics
Matches: 62, Mismatches: 15, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
25 9 0.15
26 6 0.10
27 11 0.18
28 17 0.27
29 1 0.02
30 4 0.06
31 5 0.08
32 9 0.15
ACGTcount: A:0.37, C:0.01, G:0.02, T:0.61
Consensus pattern (27 bp):
AATTTTAAAATTTATTTAAATATTTTT
Found at i:68050266 original size:99 final size:99
Alignment explanation
Indices: 68050088--68050273 Score: 259
Period size: 99 Copynumber: 1.9 Consensus size: 99
68050078 GACCAATTTG
* * * **
68050088 CTCATTTTCAAAATTGACAGGGACCAAAAAGGTATTTATACCAATCTGTTATTTGAATTATTCAA
1 CTCATTGTCAAAATTGACAGGGACCAAAAAGGTATTTACACCAATATGTTATTCAAATTATTCAA
* *
68050153 GTTATTTAAATTGTAAAATTCATCTTGACTCAAT
66 GTTACTCAAATTGTAAAATTCATCTTGACTCAAT
*
68050187 CTCATTGTCAAAATTGACAGGGACC-AAAAGGATATTTACACCAATATGTTATTCAAATTATTTG
1 CTCATTGTCAAAATTGACAGGGACCAAAAAGG-TATTTACACCAATATGTTATTCAAATTA-TTC
*
68050251 AA-TTACTCAAGTTGTAAAATTCA
64 AAGTTACTCAAATTGTAAAATTCA
68050274 ACTCGACTTG
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
98 6 0.08
99 66 0.87
100 4 0.05
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.36
Consensus pattern (99 bp):
CTCATTGTCAAAATTGACAGGGACCAAAAAGGTATTTACACCAATATGTTATTCAAATTATTCAA
GTTACTCAAATTGTAAAATTCATCTTGACTCAAT
Found at i:68050617 original size:20 final size:20
Alignment explanation
Indices: 68050587--68050624 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
68050577 ACATGTTTTC
68050587 ATTTTTTAAAAT-AAAAAAT
1 ATTTTTTAAAATGAAAAAAT
68050606 ATTTTTTGAAAATGAAAAA
1 ATTTTTT-AAAATGAAAAA
68050625 GAAAAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 5 0.29
21 5 0.29
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (20 bp):
ATTTTTTAAAATGAAAAAAT
Found at i:68060998 original size:25 final size:23
Alignment explanation
Indices: 68060964--68061010 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
68060954 TTGTTATATC
*
68060964 AATTGTTTTCCATATATGCTTAGAA
1 AATTGGTTT-CAT-TATGCTTAGAA
*
68060989 AATTGGTTTCATTTTGCTTAGA
1 AATTGGTTTCATTATGCTTAGA
68061011 TTAATTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 3 0.15
25 8 0.40
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.47
Consensus pattern (23 bp):
AATTGGTTTCATTATGCTTAGAA
Found at i:68064384 original size:26 final size:26
Alignment explanation
Indices: 68064347--68064430 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
68064337 TGATACAAAT
* *
68064347 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68064373 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68064399 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
68064425 TGATAA
1 TGATAA
68064431 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:68067539 original size:5 final size:5
Alignment explanation
Indices: 68067494--68067561 Score: 52
Period size: 5 Copynumber: 13.6 Consensus size: 5
68067484 ATATTTTTAT
* * *
68067494 ATATA ATAAA ATATA A-ATA ATAT- ATACA CCATATA AAATA ATATA ATA-A
1 ATATA ATATA ATATA ATATA ATATA ATATA --ATATA ATATA ATATA ATATA
*
68067543 TATATA ATATA ATAAA ATA
1 -ATATA ATATA ATATA ATA
68067562 AATGGATTTC
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
4 8 0.16
5 37 0.74
6 1 0.02
7 4 0.08
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.32
Consensus pattern (5 bp):
ATATA
Found at i:68067543 original size:8 final size:8
Alignment explanation
Indices: 68067530--68067562 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
68067520 CACCATATAA
68067530 AATAATAT
1 AATAATAT
68067538 AATAATAT
1 AATAATAT
68067546 -ATAATAT
1 AATAATAT
*
68067553 AATAAAAT
1 AATAATAT
68067561 AA
1 AA
68067563 ATGGATTTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
7 7 0.30
8 16 0.70
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (8 bp):
AATAATAT
Found at i:68067688 original size:15 final size:15
Alignment explanation
Indices: 68067670--68067702 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
68067660 TACAGTAAAT
68067670 AAAT-AATAATATTTA
1 AAATAAATAA-ATTTA
68067685 AAATAAATAAATTTA
1 AAATAAATAAATTTA
68067700 AAA
1 AAA
68067703 GTGTAAGAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATAAATAAATTTA
Found at i:68067750 original size:28 final size:28
Alignment explanation
Indices: 68067718--68067771 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
68067708 AGAGGACTAA
*
68067718 AATTAAAAGAAAT-TAAAAAATTTGGGTT
1 AATTAAAA-AAATATAAAAAAATTGGGTT
*
68067746 AATTAGAAAAATATAAAAAAATTGGG
1 AATTAAAAAAATATAAAAAAATTGGG
68067772 CCTATTTGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.57, C:0.00, G:0.15, T:0.28
Consensus pattern (28 bp):
AATTAAAAAAATATAAAAAAATTGGGTT
Found at i:68069966 original size:220 final size:220
Alignment explanation
Indices: 68069584--68070070 Score: 751
Period size: 220 Copynumber: 2.2 Consensus size: 220
68069574 ATGCTGATAT
* ** * * * **
68069584 TTCGATCTGCTCTCCGTCGAACACAGAGACGCCAAATTTGCTTCTTCGCTTTGTTCCCTGACAAT
1 TTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATTTGTTCCCTGACAAT
* *
68069649 ACAGAGATGCCAAATCATCTTAGATTCGCTTCAGCGTAAACACGTGAAAGCCAAATCTACTATGT
66 ACAGAGATGCCAAATCATCTTAGATTCGCTTCAGCATAAACACGTGAAAGCAAAATCTACTATGT
* *
68069714 CTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTGCTTTGATGCAAAAAC
131 CTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGCAAAAAC
68069779 ATCCGAAGGTTAAATCTGCTATGTC
196 ATCCGAAGGTTAAATCTGCTATGTC
*
68069804 TTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTGACAAT
1 TTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATTTGTTCCCTGACAAT
*
68069869 ACAGAGATGCCAAATCATCTTAGA-TCTGCTTCAGCATAAACACGTGAAAGCAAAATCTGCTATG
66 ACAGAGATGCCAAATCATCTTAGATTC-GCTTCAGCATAAACACGTGAAAGCAAAATCTACTATG
* * **
68069933 TCTTTGATCTGCTCCTTGTAAATGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAAA
130 TCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGCAAAAA
* *
68069998 CATCCGAAGGTTAGATCTGCTATGTT
195 CATCCGAAGGTTAAATCTGCTATGTC
* *
68070024 TTCGATCTACTCTCCGTCAAATATGGAGATGCCAAATCTGTTATCTT
1 TTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTT-TCTT
68070071 GGATCTGCTT
Statistics
Matches: 243, Mismatches: 22, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
219 2 0.01
220 237 0.98
221 4 0.02
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (220 bp):
TTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATTTGTTCCCTGACAAT
ACAGAGATGCCAAATCATCTTAGATTCGCTTCAGCATAAACACGTGAAAGCAAAATCTACTATGT
CTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGCAAAAAC
ATCCGAAGGTTAAATCTGCTATGTC
Found at i:68070031 original size:89 final size:92
Alignment explanation
Indices: 68069923--68070156 Score: 252
Period size: 94 Copynumber: 2.6 Consensus size: 92
68069913 TGAAAGCAAA
*
68069923 ATCTGCTATGTCTTT-GATCTGCTCCT-TGT-AAATGCA-AG-GATGCCAAATC-ATCTTGGATC
1 ATCTGCTATGT-TTTCGATCTGCTCCTCCGTCAAAT--ATAGAGATGCCAAATCTATCTTGGATC
*
68069982 TACTTCGATGTGAAAACATCCGAAGGTTAG
63 TACTTCGATGTGAAAACATCCGAAGGTCAG
* *
68070012 ATCTGCTATGTTTTCGATCTACT-CTCCGTCAAATATGGAGATGCCAAATCTGTTATCTTGGATC
1 ATCTGCTATGTTTTCGATCTGCTCCTCCGTCAAATATAGAGATGCCAAATC---TATCTTGGATC
* **
68070076 TGCTTCGATGTGAAAACATTTGAAGGTCAG
63 TACTTCGATGTGAAAACATCCGAAGGTCAG
* * *
68070106 ATCTGCTATG-TCTCTGATCTGCT-CTCCGTCGAATATGGAGATGCCAAATCT
1 ATCTGCTATGTTTTC-GATCTGCTCCTCCGTCAAATATAGAGATGCCAAATCT
68070157 GTTTCTTCGA
Statistics
Matches: 125, Mismatches: 10, Indels: 18
0.82 0.07 0.12
Matches are distributed among these distances:
88 6 0.05
89 21 0.17
90 15 0.12
91 1 0.01
93 3 0.02
94 79 0.63
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (92 bp):
ATCTGCTATGTTTTCGATCTGCTCCTCCGTCAAATATAGAGATGCCAAATCTATCTTGGATCTAC
TTCGATGTGAAAACATCCGAAGGTCAG
Found at i:68070087 original size:94 final size:94
Alignment explanation
Indices: 68069972--68070163 Score: 298
Period size: 94 Copynumber: 2.1 Consensus size: 94
68069962 ATGCCAAATC
* *
68069972 ATCTTGGATCTACTTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGT-TTTCGATCTACTC
1 ATCTTGGATCTACTTCGATGTGAAAACATCCGAAGGTCAGATCTGCTATGTCTCT-GATCTACTC
68070036 TCCGTCAAATATGGAGATGCCAAATCTGTT
65 TCCGTCAAATATGGAGATGCCAAATCTGTT
* ** *
68070066 ATCTTGGATCTGCTTCGATGTGAAAACATTTGAAGGTCAGATCTGCTATGTCTCTGATCTGCTCT
1 ATCTTGGATCTACTTCGATGTGAAAACATCCGAAGGTCAGATCTGCTATGTCTCTGATCTACTCT
*
68070131 CCGTCGAATATGGAGATGCCAAATCTGTT
66 CCGTCAAATATGGAGATGCCAAATCTGTT
68070160 -TCTT
1 ATCTT
68070164 CGATTTGTTC
Statistics
Matches: 90, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
93 4 0.04
94 84 0.93
95 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (94 bp):
ATCTTGGATCTACTTCGATGTGAAAACATCCGAAGGTCAGATCTGCTATGTCTCTGATCTACTCT
CCGTCAAATATGGAGATGCCAAATCTGTT
Found at i:68083649 original size:14 final size:15
Alignment explanation
Indices: 68083604--68083751 Score: 77
Period size: 14 Copynumber: 10.6 Consensus size: 15
68083594 TTCTTTTCAA
68083604 CTCAATT-TTCAATC
1 CTCAATTCTTCAATC
*
68083618 CTTAA-TCTTCAA-C
1 CTCAATTCTTCAATC
*
68083631 TTCAATTCTT-AATC
1 CTCAATTCTTCAATC
* *
68083645 CTCAA-TCCTCAATT
1 CTCAATTCTTCAATC
* *
68083659 TTCAA-TCCTCAAT-
1 CTCAATTCTTCAATC
* * *
68083672 CT-ATAATATTCAATT
1 CTCA-ATTCTTCAATC
*
68083687 TTCAA-TCTTCAATC
1 CTCAATTCTTCAATC
*
68083701 TTCAA-TCTTCAATC
1 CTCAATTCTTCAATC
*
68083715 TTCAATT-TTCAATC
1 CTCAATTCTTCAATC
* *
68083729 CTTAATTC-TCAATT
1 CTCAATTCTTCAATC
68083743 CTCAATTCT
1 CTCAATTCT
68083752 CGATTCTTGA
Statistics
Matches: 106, Mismatches: 17, Indels: 21
0.74 0.12 0.15
Matches are distributed among these distances:
12 1 0.01
13 12 0.11
14 89 0.84
15 3 0.03
16 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.00, T:0.44
Consensus pattern (15 bp):
CTCAATTCTTCAATC
Found at i:68083653 original size:7 final size:7
Alignment explanation
Indices: 68083605--68083728 Score: 121
Period size: 7 Copynumber: 17.9 Consensus size: 7
68083595 TCTTTTCAAC
*
68083605 TCAATTT
1 TCAATCT
68083612 TCAATCCT
1 TCAAT-CT
68083620 T-AATCT
1 TCAATCT
68083626 TCAA-CT
1 TCAATCT
68083632 TCAATTCT
1 TCAA-TCT
*
68083640 T-AATCC
1 TCAATCT
*
68083646 TCAATCC
1 TCAATCT
*
68083653 TCAATTT
1 TCAATCT
*
68083660 TCAATCC
1 TCAATCT
68083667 TCAATCT
1 TCAATCT
*
68083674 AT-AATAT
1 -TCAATCT
*
68083681 TCAATTT
1 TCAATCT
68083688 TCAATCT
1 TCAATCT
68083695 TCAATCT
1 TCAATCT
68083702 TCAATCT
1 TCAATCT
68083709 TCAATCT
1 TCAATCT
*
68083716 TCAATTT
1 TCAATCT
68083723 TCAATC
1 TCAATC
68083729 CTTAATTCTC
Statistics
Matches: 98, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
6 13 0.13
7 79 0.81
8 6 0.06
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.44
Consensus pattern (7 bp):
TCAATCT
Found at i:68083658 original size:21 final size:21
Alignment explanation
Indices: 68083612--68083672 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 21
68083602 AACTCAATTT
* * *
68083612 TCAATCCTTAATCTTCAA-CT
1 TCAATTCTTAATCCTCAATCC
68083632 TCAATTCTTAATCCTCAATCC
1 TCAATTCTTAATCCTCAATCC
68083653 TCAATT-TTCAATCCTCAATC
1 TCAATTCTT-AATCCTCAATC
68083673 TATAATATTC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
20 18 0.50
21 18 0.50
ACGTcount: A:0.30, C:0.31, G:0.00, T:0.39
Consensus pattern (21 bp):
TCAATTCTTAATCCTCAATCC
Found at i:68083683 original size:21 final size:21
Alignment explanation
Indices: 68083597--68083748 Score: 120
Period size: 21 Copynumber: 7.4 Consensus size: 21
68083587 AACTTTATTC
*
68083597 TTTTCAA--CTCAATTTTCAA
1 TTTTCAATCCTCAATCTTCAA
* *
68083616 TCCTT-AATCTTCAA-CTTCAA
1 T-TTTCAATCCTCAATCTTCAA
*
68083636 TTCTT-AATCCTCAATCCTCAA
1 TT-TTCAATCCTCAATCTTCAA
68083657 TTTTCAATCCTCAATCTAT-AA
1 TTTTCAATCCTCAATCT-TCAA
* **
68083678 TATTCAATTTTCAATCTTCAA
1 TTTTCAATCCTCAATCTTCAA
* *
68083699 TCTTCAATCTTCAATCTTCAA
1 TTTTCAATCCTCAATCTTCAA
*
68083720 TTTTCAATCCTTAAT-TCTCAA
1 TTTTCAATCCTCAATCT-TCAA
*
68083741 TTCTCAAT
1 TTTTCAAT
68083749 TCTCGATTCT
Statistics
Matches: 108, Mismatches: 16, Indels: 16
0.77 0.11 0.11
Matches are distributed among these distances:
19 3 0.03
20 22 0.20
21 82 0.76
22 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTTCAATCCTCAATCTTCAA
Found at i:68083742 original size:7 final size:7
Alignment explanation
Indices: 68083632--68083758 Score: 59
Period size: 7 Copynumber: 18.1 Consensus size: 7
68083622 ATCTTCAACT
68083632 TCAATTC
1 TCAATTC
* *
68083639 TTAATCC
1 TCAATTC
*
68083646 TCAATCC
1 TCAATTC
*
68083653 TCAATTT
1 TCAATTC
*
68083660 TCAATCC
1 TCAATTC
68083667 TCAA-TC
1 TCAATTC
*
68083673 TATAATAT-
1 T-CAAT-TC
*
68083681 TCAATTT
1 TCAATTC
68083688 TCAA-TC
1 TCAATTC
68083694 TTCAA-TC
1 -TCAATTC
68083701 TTCAA-TC
1 -TCAATTC
68083708 TTCAA-TC
1 -TCAATTC
*
68083715 TTCAATTT
1 -TCAATTC
*
68083723 TCAATCC
1 TCAATTC
*
68083730 TTAATTC
1 TCAATTC
68083737 TCAATTC
1 TCAATTC
68083744 TCAATTC
1 TCAATTC
*
68083751 TCGATTC
1 TCAATTC
68083758 T
1 T
68083759 TGATTTTTTT
Statistics
Matches: 96, Mismatches: 18, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
6 4 0.04
7 89 0.93
8 2 0.02
9 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.01, T:0.44
Consensus pattern (7 bp):
TCAATTC
Found at i:68095463 original size:2 final size:2
Alignment explanation
Indices: 68095458--68095484 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
68095448 ACAAAAAGAA
68095458 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
68095485 AAGATTGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:68096294 original size:12 final size:12
Alignment explanation
Indices: 68096279--68096310 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
68096269 TTTGTTTTAT
68096279 TATTATTATTAC
1 TATTATTATTAC
*
68096291 TATTAGTATTAC
1 TATTATTATTAC
68096303 TATTATTA
1 TATTATTA
68096311 CTTTTTTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.56
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:68097410 original size:5 final size:5
Alignment explanation
Indices: 68097400--68097441 Score: 66
Period size: 5 Copynumber: 8.2 Consensus size: 5
68097390 AATATCTGTG
*
68097400 AAATA AAATA AAATA AAATA AAATA AAGAAA AAATA AAATA A
1 AAATA AAATA AAATA AAATA AAATA AA-ATA AAATA AAATA A
68097442 CACACAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 30 0.88
6 4 0.12
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (5 bp):
AAATA
Found at i:68097420 original size:15 final size:16
Alignment explanation
Indices: 68097400--68097441 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
68097390 AATATCTGTG
*
68097400 AAATAAAATAAA-ATA
1 AAATAAAATAAAGAAA
68097415 AAATAAAATAAAGAAA
1 AAATAAAATAAAGAAA
68097431 AAATAAAATAA
1 AAATAAAATAA
68097442 CACACAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (16 bp):
AAATAAAATAAAGAAA
Found at i:68101867 original size:5 final size:5
Alignment explanation
Indices: 68101857--68101897 Score: 64
Period size: 5 Copynumber: 8.0 Consensus size: 5
68101847 CCAATTTGTG
*
68101857 AATAA AATAA AATAA AATAA AATAA AGAAAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA A-ATAA AATAA AATAA
68101898 CACACAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 29 0.88
6 4 0.12
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.17
Consensus pattern (5 bp):
AATAA
Found at i:68101877 original size:15 final size:16
Alignment explanation
Indices: 68101857--68101897 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
68101847 CCAATTTGTG
*
68101857 AATAAAATAAA-ATAA
1 AATAAAATAAAGAAAA
68101872 AATAAAATAAAGAAAA
1 AATAAAATAAAGAAAA
68101888 AATAAAATAA
1 AATAAAATAA
68101898 CACACAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.17
Consensus pattern (16 bp):
AATAAAATAAAGAAAA
Found at i:68104882 original size:18 final size:19
Alignment explanation
Indices: 68104841--68104882 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
68104831 GCCCAAGTGA
*
68104841 TCTGCCTGTGTGGGCCCAC
1 TCTGCCTGTATGGGCCCAC
*
68104860 -ATGCCTGTAT-GGCCCAC
1 TCTGCCTGTATGGGCCCAC
68104877 TCTGCC
1 TCTGCC
68104883 GAAATTTCCT
Statistics
Matches: 19, Mismatches: 3, Indels: 3
0.76 0.12 0.12
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.10, C:0.38, G:0.26, T:0.26
Consensus pattern (19 bp):
TCTGCCTGTATGGGCCCAC
Found at i:68106713 original size:15 final size:15
Alignment explanation
Indices: 68106693--68106722 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
68106683 AAGAACTTGG
68106693 GTCACTTAATTCTAA
1 GTCACTTAATTCTAA
68106708 GTCACTTAATTCTAA
1 GTCACTTAATTCTAA
68106723 CAATCTCCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.40
Consensus pattern (15 bp):
GTCACTTAATTCTAA
Found at i:68115412 original size:21 final size:20
Alignment explanation
Indices: 68115356--68115415 Score: 79
Period size: 19 Copynumber: 3.0 Consensus size: 20
68115346 TTAAGAGTAT
*
68115356 TTTGTTA-AATATTTTGATA
1 TTTGTTAGAATATTTTGGTA
68115375 TTTGTTAGAA-ATTTTGGTA
1 TTTGTTAGAATATTTTGGTA
*
68115394 TTTGGTTAGAATTTTTTGGTA
1 TTT-GTTAGAATATTTTGGTA
68115415 T
1 T
68115416 ATCAAAATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
19 18 0.50
20 9 0.25
21 9 0.25
ACGTcount: A:0.25, C:0.00, G:0.18, T:0.57
Consensus pattern (20 bp):
TTTGTTAGAATATTTTGGTA
Found at i:68115488 original size:40 final size:40
Alignment explanation
Indices: 68115439--68115515 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
68115429 ATAAGATGTT
* * * **
68115439 GTTAGAAATATTGGAATCACTTTAAAAATTTTGGTATTAG
1 GTTACAAATATTAGAATCACGTTAAAAAAATTGGTATTAG
*
68115479 GTTACAAATATTAGCATCACGTTAAAAAAATTGGTAT
1 GTTACAAATATTAGAATCACGTTAAAAAAATTGGTAT
68115516 CAATTAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (40 bp):
GTTACAAATATTAGAATCACGTTAAAAAAATTGGTATTAG
Found at i:68115517 original size:20 final size:20
Alignment explanation
Indices: 68115439--68115526 Score: 70
Period size: 20 Copynumber: 4.5 Consensus size: 20
68115429 ATAAGATGTT
* *
68115439 GTTAGAAATATTGGAATCAC
1 GTTAAAAATATTGGTATCAC
* * * *
68115459 TTTAAAAATTTTGGTATTAG
1 GTTAAAAATATTGGTATCAC
* * *
68115479 GTTACAAATATTAGCATCAC
1 GTTAAAAATATTGGTATCAC
*
68115499 GTTAAAAAAATTGGTATCA-
1 GTTAAAAATATTGGTATCAC
*
68115518 ATTAAAAAT
1 GTTAAAAAT
68115527 TTTAGTTTCG
Statistics
Matches: 49, Mismatches: 19, Indels: 1
0.71 0.28 0.01
Matches are distributed among these distances:
19 7 0.14
20 42 0.86
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (20 bp):
GTTAAAAATATTGGTATCAC
Found at i:68116433 original size:20 final size:20
Alignment explanation
Indices: 68116410--68116459 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
68116400 AAATCCAAAT
68116410 TAAAATACTAAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
*
68116430 TAAAATCCTAAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
68116450 TAAGAATACT
1 TAA-AATACT
68116460 GATGTGGCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 22 0.81
21 5 0.19
ACGTcount: A:0.52, C:0.12, G:0.10, T:0.26
Consensus pattern (20 bp):
TAAAATACTAAAATTCAGGA
Found at i:68116682 original size:4 final size:4
Alignment explanation
Indices: 68116673--68116701 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
68116663 GAAGATGTCA
68116673 TAAT TAAT TAAT TAAT TAAT TAAT TAAT T
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT T
68116702 CGGTGCTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TAAT
Found at i:68118564 original size:21 final size:21
Alignment explanation
Indices: 68118532--68118601 Score: 56
Period size: 21 Copynumber: 3.4 Consensus size: 21
68118522 TAAGTTTTTA
*
68118532 AAAT-AATGTATAATATAAAT
1 AAATAAATATATAATATAAAT
* **
68118552 AAATAAATATATAAGATATTT
1 AAATAAATATATAATATAAAT
*
68118573 AAGTTAAA-ATATAATATATAAT
1 AA-ATAAATATATAATATA-AAT
68118595 -AATAAAT
1 AAATAAAT
68118602 TACAAATTTT
Statistics
Matches: 37, Mismatches: 9, Indels: 7
0.70 0.17 0.13
Matches are distributed among these distances:
20 8 0.22
21 24 0.65
22 5 0.14
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (21 bp):
AAATAAATATATAATATAAAT
Found at i:68118635 original size:12 final size:13
Alignment explanation
Indices: 68118616--68118646 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
68118606 AATTTTGAAA
68118616 ATATAAATAATAT
1 ATATAAATAATAT
68118629 A-ATAAATAATAT
1 ATATAAATAATAT
68118641 ATATAA
1 ATATAA
68118647 TAAATTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
ATATAAATAATAT
Found at i:68118644 original size:16 final size:15
Alignment explanation
Indices: 68118621--68118651 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
68118611 TGAAAATATA
68118621 AATAATATAATAAAT
1 AATAATATAATAAAT
68118636 AATATATATAATAAAT
1 AATA-ATATAATAAAT
68118652 TAAAAATAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAATATAATAAAT
Found at i:68118992 original size:18 final size:18
Alignment explanation
Indices: 68118956--68119056 Score: 152
Period size: 17 Copynumber: 5.7 Consensus size: 18
68118946 AATCATATCT
*
68118956 TCTAAGATTGTATATCATA
1 TCTAAGATTGCA-ATCATA
68118975 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
68118993 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
68119010 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
68119028 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
68119045 TCTAAGATTGCA
1 TCTAAGATTGCA
68119057 TGTCATTGGA
Statistics
Matches: 75, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
17 32 0.43
18 32 0.43
19 11 0.15
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:68119014 original size:35 final size:35
Alignment explanation
Indices: 68118956--68119056 Score: 184
Period size: 35 Copynumber: 2.8 Consensus size: 35
68118946 AATCATATCT
68118956 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
68118993 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
68119028 TCTAAGATTGTATCATATCTAAGATTGCA
1 TCTAAGATTGTATCATATCTAAGATTGCA
68119057 TGTCATTGGA
Statistics
Matches: 64, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
35 54 0.84
37 10 0.16
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:68119592 original size:83 final size:77
Alignment explanation
Indices: 68119472--68119783 Score: 441
Period size: 82 Copynumber: 3.9 Consensus size: 77
68119462 TCTGTTTGAG
* * *
68119472 AACATTTGAGAATCATATCTGCAAGGTCCTCGACTTGTTCCTTGTAAGCACAAGGATGCCTAAAC
1 AACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCC-AAAC
68119537 CATCTTGAGTC-T
65 CATCTTGAGTCTT
* *
68119549 -ACATTTGAGAGTCATGTCTGCAAGGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACC
1 AACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACC
68119613 ATCTTGAGTCTGTTT
66 ATCTTGAGTC---TT
68119628 GAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCC-A
1 ---AACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAA
68119692 ACCATCTTGAGTCTGTTT
63 ACCATCTTGAGTC---TT
68119710 GAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAA
1 ---AACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAA
68119775 ACCATCTTG
63 ACCATCTTG
68119784 GATCTGCTTC
Statistics
Matches: 221, Mismatches: 5, Indels: 12
0.93 0.02 0.05
Matches are distributed among these distances:
75 15 0.07
76 56 0.25
79 1 0.00
82 82 0.37
83 67 0.30
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (77 bp):
AACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACC
ATCTTGAGTCTT
Found at i:68119734 original size:82 final size:83
Alignment explanation
Indices: 68119549--68119783 Score: 445
Period size: 82 Copynumber: 2.8 Consensus size: 83
68119539 TCTTGAGTCT
* *
68119549 ACATTTGAGAGTCATGTCTGCAAGGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCA
1 ACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCA
68119614 TCTTGAGTCTGTTTGAGA
66 TCTTGAGTCTGTTTGAGA
68119632 ACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCC-AACCA
1 ACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCA
68119696 TCTTGAGTCTGTTTGAGA
66 TCTTGAGTCTGTTTGAGA
68119714 ACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCA
1 ACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCA
68119779 TCTTG
66 TCTTG
68119784 GATCTGCTTC
Statistics
Matches: 149, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
82 82 0.55
83 67 0.45
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (83 bp):
ACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCA
TCTTGAGTCTGTTTGAGA
Found at i:68119918 original size:119 final size:119
Alignment explanation
Indices: 68119707--68120062 Score: 595
Period size: 119 Copynumber: 3.0 Consensus size: 119
68119697 CTTGAGTCTG
* * * * * *
68119707 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
68119772 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* * *
68119826 TTTGAGAATGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
68119891 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* * *
68119945 TTTGAGAACGTTTAAGAGTCAAATCCGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
68120010 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
68120063 CTTCGATCTG
Statistics
Matches: 221, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
119 221 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:68120102 original size:44 final size:44
Alignment explanation
Indices: 68120054--68120233 Score: 161
Period size: 44 Copynumber: 4.1 Consensus size: 44
68120044 TGAAGGTTAG
68120054 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
*
68120098 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * ** * * * * *
68120140 ATGCTGAAATCTTCAATCTACTTTGC-AGAGAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCT-GTTCCCTATA-AACACAGGGATGCCAA
* **
68120186 ATCTACTATCTTCGATCTGTTCCCTATAAACATGGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
68120230 ATCT
1 ATCT
68120234 TGTTTCTTTG
Statistics
Matches: 103, Mismatches: 25, Indels: 16
0.72 0.17 0.11
Matches are distributed among these distances:
42 2 0.02
43 14 0.14
44 71 0.69
45 14 0.14
46 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:68121127 original size:20 final size:22
Alignment explanation
Indices: 68121104--68121168 Score: 62
Period size: 23 Copynumber: 3.0 Consensus size: 22
68121094 TCACCTTGGC
68121104 CTCTCCA-TTTTTTC-CTTTTT
1 CTCTCCATTTTTTTCTCTTTTT
**
68121124 CTCTTTATTTTTTTCTCTTTTT
1 CTCTCCATTTTTTTCTCTTTTT
* **
68121146 CTTTTCTTTTTTTTTCTCTTTTT
1 C-TCTCCATTTTTTTCTCTTTTT
68121169 TTTTGAAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
20 5 0.14
21 7 0.19
22 7 0.19
23 18 0.49
ACGTcount: A:0.03, C:0.22, G:0.00, T:0.75
Consensus pattern (22 bp):
CTCTCCATTTTTTTCTCTTTTT
Found at i:68121145 original size:11 final size:11
Alignment explanation
Indices: 68121131--68121171 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
68121121 TTTCTCTTTA
68121131 TTTTTTTCTCT
1 TTTTTTTCTCT
68121142 TTTTCTTT-TCTT
1 TTTT-TTTCTC-T
68121154 TTTTTTTCTCT
1 TTTTTTTCTCT
68121165 TTTTTTT
1 TTTTTTT
68121172 TGAAATAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTTCTCT
Found at i:68121145 original size:23 final size:23
Alignment explanation
Indices: 68121111--68121168 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
68121101 GGCCTCTCCA
68121111 TTTTTTC-CTTTTTCTCTT-TAT
1 TTTTTTCTCTTTTTCTCTTCTAT
* *
68121132 TTTTTTCTCTTTTTCTTTTCTTT
1 TTTTTTCTCTTTTTCTCTTCTAT
68121155 TTTTTTCTCTTTTT
1 TTTTTTCTCTTTTT
68121169 TTTTGAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 7 0.21
22 10 0.30
23 16 0.48
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (23 bp):
TTTTTTCTCTTTTTCTCTTCTAT
Found at i:68121165 original size:12 final size:12
Alignment explanation
Indices: 68121119--68121172 Score: 74
Period size: 12 Copynumber: 4.4 Consensus size: 12
68121109 CATTTTTTCC
68121119 TTTTTCTCTTTATT
1 TTTTTCTC-TT-TT
68121133 TTTTTCTCTTTT
1 TTTTTCTCTTTT
*
68121145 TCTTT-TCTTTT
1 TTTTTCTCTTTT
68121156 TTTTTCTCTTTT
1 TTTTTCTCTTTT
68121168 TTTTT
1 TTTTT
68121173 GAAATAGAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.27
12 17 0.46
13 2 0.05
14 8 0.22
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTTCTCTTTT
Found at i:68126369 original size:32 final size:32
Alignment explanation
Indices: 68126328--68126395 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
68126318 AACATACAAG
68126328 ATAACCTATTATAGAAATAGGTAAATAAAAGC
1 ATAACCTATTATAGAAATAGGTAAATAAAAGC
68126360 ATAACCTATTATAGAAATAGGTAAATAAAAGC
1 ATAACCTATTATAGAAATAGGTAAATAAAAGC
68126392 ATAA
1 ATAA
68126396 TAACAATAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.54, C:0.09, G:0.12, T:0.25
Consensus pattern (32 bp):
ATAACCTATTATAGAAATAGGTAAATAAAAGC
Found at i:68127044 original size:21 final size:21
Alignment explanation
Indices: 68127012--68127081 Score: 65
Period size: 21 Copynumber: 3.4 Consensus size: 21
68127002 TAAGTTTTTA
*
68127012 AAAT-AATGTATAATATAAAT
1 AAATAAATATATAATATAAAT
* *
68127032 AAATAAATATATAAGATATAT
1 AAATAAATATATAATATAAAT
*
68127053 AAGTTAAA-ATATAATATATAAT
1 AA-ATAAATATATAATATA-AAT
68127075 -AATAAAT
1 AAATAAAT
68127082 TACAAATTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
20 8 0.21
21 25 0.64
22 6 0.15
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.34
Consensus pattern (21 bp):
AAATAAATATATAATATAAAT
Found at i:68127045 original size:28 final size:29
Alignment explanation
Indices: 68127014--68127074 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 29
68127004 AGTTTTTAAA
68127014 ATAATGTATAATATAA-AT-AAATA-AATAT
1 ATAATG-AT-ATATAAGATAAAATATAATAT
*
68127042 ATAA-GATATATAAGTTAAAATATAATAT
1 ATAATGATATATAAGATAAAATATAATAT
68127070 ATAAT
1 ATAAT
68127075 AATAAATTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
25 6 0.21
26 3 0.11
27 6 0.21
28 13 0.46
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (29 bp):
ATAATGATATATAAGATAAAATATAATAT
Found at i:68127124 original size:16 final size:15
Alignment explanation
Indices: 68127101--68127131 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
68127091 TGAAAATATA
68127101 AATAATATAATAAAT
1 AATAATATAATAAAT
68127116 AATATATATAATAAAT
1 AATA-ATATAATAAAT
68127132 TAAAAATAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAATATAATAAAT
Found at i:68127489 original size:17 final size:18
Alignment explanation
Indices: 68127436--68127542 Score: 137
Period size: 17 Copynumber: 5.9 Consensus size: 18
68127426 AATCATATCT
*
68127436 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
68127455 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
68127473 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
68127490 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
*
68127508 TCGAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
68127525 TCGAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
68127543 TGAAGATTAT
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
17 32 0.41
18 31 0.39
19 16 0.20
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:68127494 original size:35 final size:35
Alignment explanation
Indices: 68127436--68127542 Score: 169
Period size: 35 Copynumber: 3.0 Consensus size: 35
68127426 AATCATATCT
68127436 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
68127473 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
68127508 TCGAAGATTGTATCATATCGAAGATTGCATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
68127543 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
35 52 0.78
36 5 0.07
37 10 0.15
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:68128061 original size:7 final size:7
Alignment explanation
Indices: 68128049--68128073 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
68128039 TAGTTAAAAC
68128049 TAATTAA
1 TAATTAA
68128056 TAATTAA
1 TAATTAA
68128063 TAATTAA
1 TAATTAA
68128070 TAAT
1 TAAT
68128074 GGGAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
TAATTAA
Found at i:68129515 original size:43 final size:44
Alignment explanation
Indices: 68129466--68129616 Score: 184
Period size: 43 Copynumber: 3.5 Consensus size: 44
68129456 AATTACCGAG
* *
68129466 ATGTGATTACATGTAAGACCATGTTTGGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* *
68129510 -TGTGATTACGTGTAAGACCATGCCTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
68129552 GTATGACTT-CGTGTAAGACCATGTCTGGGACATTGGCATCG-AT
1 ATGTGA-TTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
**
68129595 ATGTGACAACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
68129617 ATTTGGGATA
Statistics
Matches: 92, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
42 1 0.01
43 89 0.97
44 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:68130372 original size:22 final size:20
Alignment explanation
Indices: 68130347--68130395 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
68130337 GTTATGTAAG
*
68130347 TTTGATGATTTTGGCATATTGA
1 TTTGATG-TTTTGGC-TATGGA
68130369 TTTGGTATGTTTTGGCTATGGA
1 TTT-G-ATGTTTTGGCTATGGA
68130391 TTTGA
1 TTTGA
68130396 GTAGTTAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
21 1 0.04
22 11 0.46
23 8 0.33
24 3 0.12
ACGTcount: A:0.18, C:0.04, G:0.27, T:0.51
Consensus pattern (20 bp):
TTTGATGTTTTGGCTATGGA
Found at i:68133009 original size:16 final size:16
Alignment explanation
Indices: 68132990--68133034 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
68132980 TTTTCCTTTG
68132990 TATTTATTTATTTATA
1 TATTTATTTATTTATA
** *
68133006 TATTTATGCATTTATC
1 TATTTATTTATTTATA
*
68133022 TATTTTTTTATTT
1 TATTTATTTATTT
68133035 TTGTGTTTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.69
Consensus pattern (16 bp):
TATTTATTTATTTATA
Found at i:68133076 original size:12 final size:13
Alignment explanation
Indices: 68133058--68133107 Score: 52
Period size: 12 Copynumber: 3.9 Consensus size: 13
68133048 TTTTTTCTCA
68133058 CTATTATTATTAT
1 CTATTATTATTAT
68133071 -TATTATT-TTAT
1 CTATTATTATTAT
68133082 CTATTATTTATTTAT
1 CTATTA-TTA-TTAT
*
68133097 GTATT-TTATTA
1 CTATTATTATTA
68133108 CAAATTGCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
11 4 0.12
12 15 0.47
13 5 0.16
15 8 0.25
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (13 bp):
CTATTATTATTAT
Found at i:68133085 original size:24 final size:24
Alignment explanation
Indices: 68133062--68133105 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
68133052 TTCTCACTAT
68133062 TATTA-TTA-TTAT-TATTTTATC
1 TATTATTTATTTATGTATTTTATC
68133083 TATTATTTATTTATGTATTTTAT
1 TATTATTTATTTATGTATTTTAT
68133106 TACAAATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 5 0.25
22 3 0.15
23 4 0.20
24 8 0.40
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (24 bp):
TATTATTTATTTATGTATTTTATC
Found at i:68133193 original size:4 final size:4
Alignment explanation
Indices: 68133184--68133216 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
68133174 TTTTCCTCTA
*
68133184 TATT TATT TATG TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT TATT T
68133217 CGTTGTCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:68133284 original size:3 final size:3
Alignment explanation
Indices: 68133276--68133324 Score: 80
Period size: 3 Copynumber: 16.3 Consensus size: 3
68133266 ATTTTGTCAC
* *
68133276 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
68133324 T
1 T
68133325 TATTTTTTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:68136167 original size:47 final size:47
Alignment explanation
Indices: 68136099--68136226 Score: 131
Period size: 47 Copynumber: 2.7 Consensus size: 47
68136089 ACAACTCGTA
* *
68136099 GCCGATGCACGTCCCAAACATGTCTTACACTAGCACTCGTC-TCAA-T-
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTC-TCAT-AAGTG
*
68136145 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCTCATAA-GTG
* *
68136193 GCTGATGCATGTCCTAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
68136227 TTACACAGGT
Statistics
Matches: 69, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
45 4 0.06
46 21 0.30
47 28 0.41
48 16 0.23
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCTCATAAGTG
Found at i:68137372 original size:3 final size:3
Alignment explanation
Indices: 68137364--68137392 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
68137354 TTATAACCTC
68137364 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
68137393 TTTCCCAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:68147736 original size:31 final size:31
Alignment explanation
Indices: 68147696--68147761 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
68147686 AACCCTTCCT
*
68147696 GCATTAAATCCAACCAAAAACAACAAATATA
1 GCATGAAATCCAACCAAAAACAACAAATATA
* *
68147727 GCATGAAATCCAGCCAAAAACAACAAATGTA
1 GCATGAAATCCAACCAAAAACAACAAATATA
68147758 GCAT
1 GCAT
68147762 AAAAAATACA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.53, C:0.23, G:0.09, T:0.15
Consensus pattern (31 bp):
GCATGAAATCCAACCAAAAACAACAAATATA
Found at i:68148027 original size:21 final size:21
Alignment explanation
Indices: 68148003--68148046 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
68147993 TCTGCTGCCA
*
68148003 TCGCTGCTACCTCTACCTCCC
1 TCGCTGCTACCGCTACCTCCC
* *
68148024 TCGCTGCTGCCGCTGCCTCCC
1 TCGCTGCTACCGCTACCTCCC
68148045 TC
1 TC
68148047 TCTACTGCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.05, C:0.52, G:0.16, T:0.27
Consensus pattern (21 bp):
TCGCTGCTACCGCTACCTCCC
Found at i:68153584 original size:9 final size:9
Alignment explanation
Indices: 68153552--68153984 Score: 123
Period size: 9 Copynumber: 47.7 Consensus size: 9
68153542 TAAGTATAAT
68153552 TAAGTTATG
1 TAAGTTATG
*
68153561 TAAGTCAT-
1 TAAGTTATG
*
68153569 TTA-TTATG
1 TAAGTTATG
68153577 TAAGTTATG
1 TAAGTTATG
68153586 T-A-TTATG
1 TAAGTTATG
68153593 TAAGTTATG
1 TAAGTTATG
*
68153602 TAAATTATG
1 TAAGTTATG
68153611 TAAGTTATG
1 TAAGTTATG
* *
68153620 -AATTTTGATCTT
1 TAA-GTT-A--TG
*
68153632 TAAATTATG
1 TAAGTTATG
68153641 TAAGTTATG
1 TAAGTTATG
68153650 T-A-TTATG
1 TAAGTTATG
68153657 TAAGTTATG
1 TAAGTTATG
* * *
68153666 AAATTTGATCTT
1 TAAGTT-A--TG
*
68153678 TAAATTATTATG
1 T-AA--GTTATG
68153690 TAAGTTATG
1 TAAGTTATG
*
68153699 TAAATTATG
1 TAAGTTATG
*
68153708 TAACTTATG
1 TAAGTTATG
* * *
68153717 AAATTTGATCTT
1 TAAGTT-A--TG
*
68153729 TAAATTATG
1 TAAGTTATG
68153738 TAAGTTATG
1 TAAGTTATG
*
68153747 -AAATT-TG
1 TAAGTTATG
* **
68153754 -AACTTTAAA
1 TAA-GTTATG
*
68153763 TTA-TTATG
1 TAAGTTATG
68153771 TAAGTTATG
1 TAAGTTATG
*
68153780 TAAATTATG
1 TAAGTTATG
*
68153789 TAACTTATG
1 TAAGTTATG
* * *
68153798 -AGATTTGGTCTT
1 TA-A---GTTATG
*
68153810 TAAATTATG
1 TAAGTTATG
68153819 TAAGTTATG
1 TAAGTTATG
*
68153828 T-A-TCATG
1 TAAGTTATG
68153835 TAAGTTATG
1 TAAGTTATG
* * *
68153844 AAATTTGATCTT
1 TAAGTT-A--TG
*
68153856 TAAATTATG
1 TAAGTTATG
*
68153865 TAAGTCATG
1 TAAGTTATG
68153874 T-A-TTATG
1 TAAGTTATG
*
68153881 TAAGCTATG
1 TAAGTTATG
68153890 T-A-TTATG
1 TAAGTTATG
*
68153897 TAAGTTAAG
1 TAAGTTATG
*
68153906 TAAATTATG
1 TAAGTTATG
68153915 TAAGTTATG
1 TAAGTTATG
* * *
68153924 AAATTTAAACTT
1 TAAGTT--A-TG
*
68153936 TAAATTATG
1 TAAGTTATG
68153945 TAAGTTATG
1 TAAGTTATG
68153954 T-A-TTATG
1 TAAGTTATG
*
68153961 TAAATTATG
1 TAAGTTATG
*
68153970 TAAATTATG
1 TAAGTTATG
*
68153979 TGAGTT
1 TAAGTT
68153985 GCAGGTGAAC
Statistics
Matches: 309, Mismatches: 72, Indels: 86
0.66 0.15 0.18
Matches are distributed among these distances:
7 40 0.13
8 30 0.10
9 195 0.63
10 6 0.02
11 6 0.02
12 24 0.08
13 5 0.02
14 1 0.00
15 2 0.01
ACGTcount: A:0.36, C:0.03, G:0.15, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:68153636 original size:30 final size:30
Alignment explanation
Indices: 68153602--68153766 Score: 107
Period size: 30 Copynumber: 5.3 Consensus size: 30
68153592 GTAAGTTATG
68153602 TAAATTATGTAAGTTATGAATTTTGATCTT
1 TAAATTATGTAAGTTATGAATTTTGATCTT
* * **
68153632 TAAATTATGTAAGTTATGTATTATGTAAGTT
1 TAAATTATGTAAGTTATGAATTTTG-ATCTT
* * * ** * * *
68153663 ATGAAATTTGATCTTTAAATTAT-TATGTAAGTTATG
1 -T-AAA-TT-A--TGTAAGTTATGAAT-TTTGATCTT
* *
68153699 TAAATTATGTAACTTATGAAATTTGATCTT
1 TAAATTATGTAAGTTATGAATTTTGATCTT
* *
68153729 TAAATTATGTAAGTTATGAAATTTGAACTT
1 TAAATTATGTAAGTTATGAATTTTGATCTT
68153759 TAAATTAT
1 TAAATTAT
68153767 TATGTAAGTT
Statistics
Matches: 104, Mismatches: 22, Indels: 18
0.72 0.15 0.12
Matches are distributed among these distances:
30 71 0.68
31 4 0.04
32 2 0.02
33 5 0.05
34 5 0.05
35 2 0.02
36 4 0.04
37 11 0.11
ACGTcount: A:0.37, C:0.03, G:0.13, T:0.47
Consensus pattern (30 bp):
TAAATTATGTAAGTTATGAATTTTGATCTT
Found at i:68153662 original size:16 final size:16
Alignment explanation
Indices: 68153556--68153971 Score: 145
Period size: 16 Copynumber: 26.0 Consensus size: 16
68153546 TATAATTAAG
* *
68153556 TTATGTAAGTCATTTA
1 TTATGTAAGTTATGTA
68153572 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
68153588 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGT--A
*
68153606 TTATGTAAGTTATGAA
1 TTATGTAAGTTATGTA
* ** **
68153622 TTTTG-ATCTT-TAAA
1 TTATGTAAGTTATGTA
68153636 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
*
68153652 TTATGTAAGTTATGAAA
1 TTATGTAAGTTATG-TA
**
68153669 TT-TG-ATCTTTAAAT-TA
1 TTATGTA-AGTT--ATGTA
68153685 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGT--A
* *
68153703 TTATGTAACTTATGAAA
1 TTATGTAAGTTATG-TA
** **
68153720 TT-TG-ATCTT-TAAA
1 TTATGTAAGTTATGTA
*
68153733 TTATGTAAGTTATGAAA
1 TTATGTAAGTTATG-TA
*
68153750 TT-TG-AACTTTAAAT-TA
1 TTATGTAA-GTT--ATGTA
68153766 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGT--A
* *
68153784 TTATGTAACTTATGAGA
1 TTATGTAAGTTATG-TA
* **
68153801 TT-TG---GTCTTTAAA
1 TTATGTAAGT-TATGTA
68153814 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
* *
68153830 TCATGTAAGTTATGAAA
1 TTATGTAAGTTATG-TA
** **
68153847 TT-TG-ATCTT-TAAA
1 TTATGTAAGTTATGTA
*
68153860 TTATGTAAGTCATGTA
1 TTATGTAAGTTATGTA
*
68153876 TTATGTAAGCTATGTA
1 TTATGTAAGTTATGTA
*
68153892 TTATGTAAGTTAAGTAAA
1 TTATGTAAGTTATGT--A
*
68153910 TTATGTAAGTTATGAAA
1 TTATGTAAGTTATG-TA
* * **
68153927 TT-T-AAACTT-TAAA
1 TTATGTAAGTTATGTA
68153940 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
*
68153956 TTATGTAAATTATGTA
1 TTATGTAAGTTATGTA
68153972 AATTATGTGA
Statistics
Matches: 296, Mismatches: 62, Indels: 84
0.67 0.14 0.19
Matches are distributed among these distances:
13 16 0.05
14 19 0.06
15 33 0.11
16 136 0.46
17 28 0.09
18 64 0.22
ACGTcount: A:0.36, C:0.03, G:0.15, T:0.46
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:68153746 original size:81 final size:81
Alignment explanation
Indices: 68153651--68153827 Score: 327
Period size: 81 Copynumber: 2.2 Consensus size: 81
68153641 TAAGTTATGT
*
68153651 ATTATGTAAGTTATGAAATTTGATCTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
68153716 GAAATTTGATCTTTAA
66 GAAATTTGATCTTTAA
68153732 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
* *
68153797 GAGATTTGGTCTTTAA
66 GAAATTTGATCTTTAA
68153813 ATTATGTAAGTTATG
1 ATTATGTAAGTTATG
68153828 TATCATGTAA
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
81 93 1.00
ACGTcount: A:0.36, C:0.03, G:0.14, T:0.46
Consensus pattern (81 bp):
ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
GAAATTTGATCTTTAA
Found at i:68153924 original size:80 final size:78
Alignment explanation
Indices: 68153813--68153963 Score: 239
Period size: 80 Copynumber: 1.9 Consensus size: 78
68153803 TGGTCTTTAA
* * *
68153813 ATTATGTAAGTTATGTATCATGTAAGTTATGAAATTTGATCTTTAAATTATGTAAGTCATGTATT
1 ATTATGTAAGTTAAGTATCATGTAAGTTATGAAATTTAAACTTTAAATTATGTAAGTCATGTATT
68153878 ATGTAAGCTATGT
66 ATGTAAGCTATGT
* *
68153891 ATTATGTAAGTTAAGTAAATTATGTAAGTTATGAAATTTAAACTTTAAATTATGTAAGTTATGTA
1 ATTATGTAAGTTAAGT--ATCATGTAAGTTATGAAATTTAAACTTTAAATTATGTAAGTCATGTA
68153956 TTATGTAA
64 TTATGTAA
68153964 ATTATGTAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 15 0.23
80 51 0.77
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.44
Consensus pattern (78 bp):
ATTATGTAAGTTAAGTATCATGTAAGTTATGAAATTTAAACTTTAAATTATGTAAGTCATGTATT
ATGTAAGCTATGT
Found at i:68153945 original size:126 final size:125
Alignment explanation
Indices: 68153602--68153975 Score: 411
Period size: 127 Copynumber: 2.9 Consensus size: 125
68153592 GTAAGTTATG
* * * * *
68153602 TAAATTATGTAAGTTATGAATTTTGATCTTTAA--ATTATGTAAGTTATGT--ATTATGTAAGTT
1 TAAATTATGTAAGTCATGAAATTTGAAC-TTAATTATTATGTAAGTTAAGTAAATTATGTAACTT
* * * *
68153663 ATGAAATTTGATCTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTATGAAATTTGATCT
65 ATGAAATTTAAACTTT-AA--ATTATGTAAGTTATGT--ATCATGTAAATTATGAAATTTGATCT
68153728 T
125 T
* *
68153729 TAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACT
1 TAAATTATGTAAGTCATGAAATTTGAAC-TT-AATTATTATGTAAGTTAAGTAAATTATGTAACT
* *** *
68153794 TATGAGATTTGGTCTTTAAATTATGTAAGTTATGTATCATGTAAGTTATGAAATTTGATCTT
64 TATGAAATTTAAACTTTAAATTATGTAAGTTATGTATCATGTAAATTATGAAATTTGATCTT
*
68153856 TAAATTATGTAAGTCATG-TATTATGTAAGC-T-ATGTATTATGTAAGTTAAGTAAATTATGTAA
1 TAAATTATGTAAGTCATGAAATT-TG-AA-CTTAAT-TATTATGTAAGTTAAGTAAATTATGTAA
* *
68153918 GTTATGAAATTTAAACTTTAAATTATGTAAGTTATGTATTATGTAAATTATGTAAATT
62 CTTATGAAATTTAAACTTTAAATTATGTAAGTTATGTATCATGTAAATTATG-AAATT
68153976 ATGTGAGTTG
Statistics
Matches: 220, Mismatches: 17, Indels: 20
0.86 0.07 0.08
Matches are distributed among these distances:
125 2 0.01
126 75 0.34
127 79 0.36
128 4 0.02
129 17 0.08
130 16 0.07
131 2 0.01
132 25 0.11
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.46
Consensus pattern (125 bp):
TAAATTATGTAAGTCATGAAATTTGAACTTAATTATTATGTAAGTTAAGTAAATTATGTAACTTA
TGAAATTTAAACTTTAAATTATGTAAGTTATGTATCATGTAAATTATGAAATTTGATCTT
Found at i:68154025 original size:15 final size:17
Alignment explanation
Indices: 68154002--68154038 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
68153992 AACTTAAAAA
68154002 AATATATATTACTTTTG
1 AATATATATTACTTTTG
68154019 AATATATATTACTTTTG
1 AATATATATTACTTTTG
68154036 AAT
1 AAT
68154039 TAGAAACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (17 bp):
AATATATATTACTTTTG
Done.