Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 210 of 344
Found at i:69632937 original size:14 final size:14
Alignment explanation
Indices: 69632918--69632947 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
69632908 TTATATCGAG
69632918 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
69632932 ACCAATCCAATTCA
1 ACCAATCCAAATCA
69632946 AC
1 AC
69632948 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:69640358 original size:47 final size:47
Alignment explanation
Indices: 69640287--69640836 Score: 956
Period size: 47 Copynumber: 11.6 Consensus size: 47
69640277 CCCTTCGGGA
* * * * * *
69640287 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69640334 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69640381 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69640428 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69640475 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69640524 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69640571 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69640618 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69640667 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69640714 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69640761 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69640810 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
69640837 TATTCAAATA
Statistics
Matches: 483, Mismatches: 14, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
47 344 0.71
49 139 0.29
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69640517 original size:96 final size:94
Alignment explanation
Indices: 69640287--69640836 Score: 956
Period size: 96 Copynumber: 5.8 Consensus size: 94
69640277 CCCTTCGGGA
* * * * * * *
69640287 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
69640352 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
69640381 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
69640446 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
69640475 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
69640540 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
69640571 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
69640636 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
69640667 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
69640732 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
69640761 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
69640826 ACTTTCACATT
64 ACTTTCACATT
69640837 TATTCAAATA
Statistics
Matches: 437, Mismatches: 13, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
94 187 0.43
96 250 0.57
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:69640543 original size:143 final size:143
Alignment explanation
Indices: 69640287--69640836 Score: 996
Period size: 143 Copynumber: 3.9 Consensus size: 143
69640277 CCCTTCGGGA
* * * * * * *
69640287 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
69640350 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
69640415 TCGGCCATTAGGC
131 TCGGCCATTAGGC
69640428 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
69640493 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
69640558 TCGGCCATTAGGC
131 TCGGCCATTAGGC
69640571 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
69640636 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
69640701 TCGGCTATTAGGC
131 TCGGCCATTAGGC
69640714 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
69640779 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
69640837 TATTCAAATA
Statistics
Matches: 395, Mismatches: 12, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
141 48 0.12
143 347 0.88
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:69644898 original size:14 final size:14
Alignment explanation
Indices: 69644879--69644908 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
69644869 TTATATCAAG
69644879 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
69644893 ACCAATCCAATTCA
1 ACCAATCCAAATCA
69644907 AC
1 AC
69644909 ATATTTTAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:69644927 original size:21 final size:23
Alignment explanation
Indices: 69644901--69644945 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
69644891 CAACCAATCC
*
69644901 AATTCA-ACATATTT-TAAGATA
1 AATTCATACATATTTATAAAATA
*
69644922 AATTCATGCATATTTATAAAATA
1 AATTCATACATATTTATAAAATA
69644945 A
1 A
69644946 CGTCATCACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 7 0.35
23 7 0.35
ACGTcount: A:0.49, C:0.09, G:0.04, T:0.38
Consensus pattern (23 bp):
AATTCATACATATTTATAAAATA
Found at i:69644951 original size:23 final size:22
Alignment explanation
Indices: 69644908--69644951 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
69644898 TCCAATTCAA
* *
69644908 CATATTTTAAGATAAATTCATG
1 CATATTTTAAAATAAAGTCATG
*
69644930 CATATTTATAAAATAACGTCAT
1 CATATTT-TAAAATAAAGTCAT
69644952 CACATACCCA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (22 bp):
CATATTTTAAAATAAAGTCATG
Found at i:69650151 original size:40 final size:39
Alignment explanation
Indices: 69650067--69650250 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
69650057 TTGAATGATG
* * * *
69650067 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
69650107 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
69650147 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
69650185 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
69650226 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
69650251 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
38 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69650202 original size:78 final size:80
Alignment explanation
Indices: 69650067--69650250 Score: 216
Period size: 78 Copynumber: 2.3 Consensus size: 80
69650057 TTGAATGATG
*
69650067 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
69650131 TGTGCGAGATACTA-A
65 TGTGCGAGATACTATA
* * * **
69650146 TTCCGGGCTAAG-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
69650208 TTGTGCGAGTTACTATA
64 TTGTGCGAGATACTATA
* *
69650225 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
69650251 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
77 1 0.01
78 57 0.63
79 8 0.09
80 24 0.27
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATA
Found at i:69664406 original size:14 final size:14
Alignment explanation
Indices: 69664387--69664416 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
69664377 TTATATCGAG
69664387 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
69664401 ACCAATCCAATTCA
1 ACCAATCCAAATCA
69664415 AC
1 AC
69664417 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:69674044 original size:45 final size:45
Alignment explanation
Indices: 69673948--69674162 Score: 171
Period size: 45 Copynumber: 4.9 Consensus size: 45
69673938 TAAGATTTTG
* * *
69673948 ATATGTATTTTCGA-GTAAGACCACGTCTAGGATGTTGGCATCGAT
1 ATATGTGTTTTC-ATGTAAGACCACGTCTGGGACGTTGGCATCGAT
*
69673993 ATATGTGTTTTCTTGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * * * * *
69674038 ATATGTGGTTACATGTAAGACCATGTCTGGGACATCGGTATCG-T
1 ATATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * *
69674082 AT-T-AG-ATTCGA-GTAAGACC-CTATCTGGGACAG-TGGCATCG--
1 ATATGTGTTTTC-ATGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT
* * **
69674122 ATATGAGATAGCATGTAAGACCACGTCTGGGACGTTGGCAT
1 ATATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCAT
69674163 TGTATGACAT
Statistics
Matches: 137, Mismatches: 23, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
40 2 0.01
41 25 0.18
42 6 0.04
43 24 0.18
44 4 0.03
45 76 0.55
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (45 bp):
ATATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCATCGAT
Found at i:69677362 original size:78 final size:78
Alignment explanation
Indices: 69677233--69677389 Score: 314
Period size: 78 Copynumber: 2.0 Consensus size: 78
69677223 CGATCTTCTC
69677233 CACCATTCTCGCAACACGAATTGCTTCAAGTGCAGACTCAAATCAATTGAATCAAAACACAGAAC
1 CACCATTCTCGCAACACGAATTGCTTCAAGTGCAGACTCAAATCAATTGAATCAAAACACAGAAC
69677298 TAGAAAAAGTTTT
66 TAGAAAAAGTTTT
69677311 CACCATTCTCGCAACACGAATTGCTTCAAGTGCAGACTCAAATCAATTGAATCAAAACACAGAAC
1 CACCATTCTCGCAACACGAATTGCTTCAAGTGCAGACTCAAATCAATTGAATCAAAACACAGAAC
69677376 TAGAAAAAGTTTT
66 TAGAAAAAGTTTT
69677389 C
1 C
69677390 TTTCTTTTTA
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 79 1.00
ACGTcount: A:0.41, C:0.24, G:0.13, T:0.23
Consensus pattern (78 bp):
CACCATTCTCGCAACACGAATTGCTTCAAGTGCAGACTCAAATCAATTGAATCAAAACACAGAAC
TAGAAAAAGTTTT
Found at i:69685006 original size:27 final size:28
Alignment explanation
Indices: 69684901--69684985 Score: 88
Period size: 26 Copynumber: 3.1 Consensus size: 28
69684891 AAAATTAATG
* * *
69684901 AAATACCCTTGA-TTTGAAAAATTAGAA
1 AAATACCATTGACTTTCAAAAATTACAA
* *
69684928 AAATACC-CT-AATTT-ATAAAATTACAA
1 AAATACCATTGACTTTCA-AAAATTACAA
69684954 AAATACCATTGACTTTCAAAAATTACAA
1 AAATACCATTGACTTTCAAAAATTACAA
69684982 AAAT
1 AAAT
69684986 GCCTTTGGTT
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
25 2 0.04
26 20 0.41
27 8 0.16
28 18 0.37
29 1 0.02
ACGTcount: A:0.52, C:0.14, G:0.05, T:0.29
Consensus pattern (28 bp):
AAATACCATTGACTTTCAAAAATTACAA
Found at i:69685022 original size:27 final size:27
Alignment explanation
Indices: 69684704--69685044 Score: 262
Period size: 27 Copynumber: 12.6 Consensus size: 27
69684694 TATAAGGTAG
* *
69684704 AATTACCAAAATACCCTCA-ATTAGCAA
1 AATTACCAAAATACCCT-AGATTTGTAA
69684731 AATTACCAAAATACCCCTAG-TTTGTAA
1 AATTACCAAAATA-CCCTAGATTTGTAA
*
69684758 AATTACCAAAATACCCCT-GATTTGTGA
1 AATTACCAAAATA-CCCTAGATTTGTAA
**
69684785 AATTACCAAAATACCCTCA-ACCTGTAA
1 AATTACCAAAATACCCT-AGATTTGTAA
* * *
69684812 AATTACCGAAATACCCTTGAATTGTAA
1 AATTACCAAAATACCCTAGATTTGTAA
* * *
69684839 AATTATCAAAATACCATCGATTTGTAA
1 AATTACCAAAATACCCTAGATTTGTAA
*
69684866 AATTACCAAAATACCCCTA-ATTTGGAA
1 AATTACCAAAATA-CCCTAGATTTGTAA
*** * *
69684893 AATTAATGAAATACCCTTGATTTGAAA
1 AATTACCAAAATACCCTAGATTTGTAA
** *
69684920 AATTAGAAAAATACCCTA-ATTTATAA
1 AATTACCAAAATACCCTAGATTTGTAA
* * * **
69684946 AATTACAAAAATACCATTGACTTTCAAA
1 AATTACCAAAATACCCTAGA-TTTGTAA
* * * * * *
69684974 AATTACAAAAATGCCTTTGGTTTGCAA
1 AATTACCAAAATACCCTAGATTTGTAA
* * *
69685001 AATTACCGAAATACCCTAGGTTTGTAG
1 AATTACCAAAATACCCTAGATTTGTAA
* *
69685028 ATTTACCAAAACACCCT
1 AATTACCAAAATACCCT
69685045 TGTAGGGTGA
Statistics
Matches: 254, Mismatches: 50, Indels: 20
0.78 0.15 0.06
Matches are distributed among these distances:
26 30 0.12
27 195 0.77
28 29 0.11
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCTAGATTTGTAA
Found at i:69685333 original size:41 final size:41
Alignment explanation
Indices: 69685288--69685404 Score: 189
Period size: 41 Copynumber: 2.9 Consensus size: 41
69685278 GAAGAAATTG
*
69685288 AGGATTGCATGGTTGCTTGACGACCGTGGATCCACCGGTTA
1 AGGATTGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
*
69685329 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
1 AGGATTGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
* * *
69685370 AGGATTGAATGGTTGCTTGATGACTGTGGATCCAC
1 AGGATTGCATGGTTGCTTGACGACCGTGGATCCAC
69685405 AGGTGGTTTT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (41 bp):
AGGATTGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
Found at i:69685600 original size:22 final size:21
Alignment explanation
Indices: 69685551--69685601 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
69685541 AATTATTCTG
*
69685551 ATTATGGCTTTGCGCCAACCT
1 ATTATGGCTCTGCGCCAACCT
* *
69685572 ATATATGGCTCTGGGCCAACTT
1 AT-TATGGCTCTGCGCCAACCT
69685594 CATTATGG
1 -ATTATGG
69685602 TTGTGTGCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 2 0.08
22 21 0.84
23 2 0.08
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.33
Consensus pattern (21 bp):
ATTATGGCTCTGCGCCAACCT
Found at i:69688920 original size:81 final size:79
Alignment explanation
Indices: 69688604--69688930 Score: 279
Period size: 81 Copynumber: 4.0 Consensus size: 79
69688594 TTTAGTTTAC
* * * *
69688604 AAAATTACCAAAATACCCTCGA-TTAGCAAAATTACCA-AGATACCCCT-AGTTTGTAAAATTAC
1 AAAATTACCAAAATACCCTTGACTT--TAAAATTA-CAGAAATACCCTTGA-TTTGTAAAATTAC
69688666 CAAAATACCCCTAATTTGT
62 CAAAATA-CCCTAATTTGT
* * * * * *
69688685 GAAATTACCGAAATACCCTCGACTTGTAAAATTACCGAAATACCCTTGACTTGTAAAATTACCGA
1 AAAATTACCAAAATACCCTTGACTT-TAAAATTACAGAAATACCCTTGATTTGTAAAATTACCAA
69688750 AATACCCTCAATTTGT
65 AATACCCT-AATTTGT
* * *
69688766 AAAATTACCAAAATACCCCT-AATTTGGAAAATTA-ATGAAATACCCTTGATTTGAAAAATTA-C
1 AAAATTACCAAAATACCCTTGACTTT--AAAATTACA-GAAATACCCTTGATTTGTAAAATTACC
**
69688828 AGAAATACCCTAATTTAC
63 A-AAATACCCTAATTTGT
** * ** * *
69688846 AAAATTAAAAAAATACCCTTGACTTTCAAAAATTACAAAAATACTATTGGTTTGCAAAATTACCA
1 AAAATTACCAAAATACCCTTGACTTT--AAAATTACAGAAATACCCTTGATTTGTAAAATTACCA
*
69688911 AAATACCCTAGGTTTGT
64 AAATACCCTA-ATTTGT
69688928 AAA
1 AAA
69688931 TGTAACACCT
Statistics
Matches: 201, Mismatches: 33, Indels: 23
0.78 0.13 0.09
Matches are distributed among these distances:
79 1 0.00
80 31 0.15
81 157 0.78
82 12 0.06
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (79 bp):
AAAATTACCAAAATACCCTTGACTTTAAAATTACAGAAATACCCTTGATTTGTAAAATTACCAAA
ATACCCTAATTTGT
Found at i:69688924 original size:27 final size:27
Alignment explanation
Indices: 69688603--69688926 Score: 248
Period size: 27 Copynumber: 12.0 Consensus size: 27
69688593 ATTTAGTTTA
* *
69688603 CAAAATTACCAAAATACCCTCGATTAG
1 CAAAATTACCAAAATACCCTAGATTTG
*
69688630 CAAAATTACCAAGATACCCCTAG-TTTG
1 CAAAATTACCAAAATA-CCCTAGATTTG
*
69688657 TAAAATTACCAAAATACCCCTA-ATTTG
1 CAAAATTACCAAAATA-CCCTAGATTTG
** * * *
69688684 TGAAATTACCGAAATACCCTCGACTTG
1 CAAAATTACCAAAATACCCTAGATTTG
* * * *
69688711 TAAAATTACCGAAATACCCTTGACTTG
1 CAAAATTACCAAAATACCCTAGATTTG
* *
69688738 TAAAATTACCGAAATACCCTCA-ATTTG
1 CAAAATTACCAAAATACCCT-AGATTTG
*
69688765 TAAAATTACCAAAATACCCCTA-ATTTG
1 CAAAATTACCAAAATA-CCCTAGATTTG
* *** *
69688792 GAAAATTAATGAAATACCCTTGATTTG
1 CAAAATTACCAAAATACCCTAGATTTG
* *
69688819 AAAAATTA-CAGAAATACCCTA-ATTTA
1 CAAAATTACCA-AAATACCCTAGATTTG
** *
69688845 CAAAATTAAAAAAATACCCTTGACTTT-
1 CAAAATTACCAAAATACCCTAGA-TTTG
* ** * *
69688872 CAAAAATTACAAAAATACTATTGGTTTG
1 C-AAAATTACCAAAATACCCTAGATTTG
*
69688900 CAAAATTACCAAAATACCCTAGGTTTG
1 CAAAATTACCAAAATACCCTAGATTTG
69688927 TAAATGTAAC
Statistics
Matches: 250, Mismatches: 35, Indels: 24
0.81 0.11 0.08
Matches are distributed among these distances:
26 28 0.11
27 191 0.76
28 31 0.12
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (27 bp):
CAAAATTACCAAAATACCCTAGATTTG
Found at i:69689992 original size:21 final size:21
Alignment explanation
Indices: 69689968--69690028 Score: 104
Period size: 21 Copynumber: 2.9 Consensus size: 21
69689958 TATAGTGAAT
69689968 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
69689989 ATATCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
69690010 ATATCATGGCATATCATGT
1 ATATCATAGCATATCATGT
69690029 ATATCAATGT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.34
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:69690027 original size:10 final size:10
Alignment explanation
Indices: 69689968--69690027 Score: 75
Period size: 10 Copynumber: 5.8 Consensus size: 10
69689958 TATAGTGAAT
*
69689968 ATATCATAGC
1 ATATCATGGC
69689978 ATATCATGTGC
1 ATATCATG-GC
**
69689989 ATATCATAAC
1 ATATCATGGC
69689999 ATATCATGTGC
1 ATATCATG-GC
69690010 ATATCATGGC
1 ATATCATGGC
69690020 ATATCATG
1 ATATCATG
69690028 TATATCAATG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
10 25 0.58
11 18 0.42
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:69690110 original size:25 final size:25
Alignment explanation
Indices: 69690064--69690112 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
69690054 ATAATCAAAC
* * *
69690064 CCTAGGGGTATAATAGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
*
69690089 CCTAGGGGCAAAACAGTTATTTTT
1 CCTAGGGGCAAAACAGTCATTTTT
69690113 CATATTTTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:69691950 original size:41 final size:41
Alignment explanation
Indices: 69691905--69691985 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
69691895 AGAAATTGAG
*
69691905 GATCGCATGGTTGCTTGACGACCGTGGATCCACCAATTAAT
1 GATCGCATGGTTGCTTGACGACCGTAGATCCACCAATTAAT
*
69691946 GATCGCATGGTTGCTTGACGACCGTAGATCCACCGATTAA
1 GATCGCATGGTTGCTTGACGACCGTAGATCCACCAATTAA
69691986 GGAGACAACC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (41 bp):
GATCGCATGGTTGCTTGACGACCGTAGATCCACCAATTAAT
Found at i:69692201 original size:22 final size:22
Alignment explanation
Indices: 69692150--69692202 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
69692140 CCAATTATTA
* *
69692150 TGATTATGGCTTTGCGCCGACC
1 TGATTATGGCTCTGCGCCAACC
* *
69692172 T-ACATATGGCTCTGGGCCAACC
1 TGA-TTATGGCTCTGCGCCAACC
69692194 TGATTATGG
1 TGATTATGG
69692203 TTGTGTGCCA
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
21 1 0.04
22 22 0.92
23 1 0.04
ACGTcount: A:0.19, C:0.25, G:0.26, T:0.30
Consensus pattern (22 bp):
TGATTATGGCTCTGCGCCAACC
Found at i:69696957 original size:25 final size:24
Alignment explanation
Indices: 69696922--69696990 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 24
69696912 CCATACAAGC
69696922 ATGTAAACGGGAAGCTCTTTCGAGCT
1 ATGT-AACGGGAAGCTCTTT-GAGCT
*
69696948 ATGTAACGGGAAGCTCATGTGAGCT
1 ATGTAACGGGAAGCTC-TTTGAGCT
* *
69696973 GTATAACGGGAAGCTCTT
1 ATGTAACGGGAAGCTCTT
69696991 GCGAACCATT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
24 1 0.03
25 31 0.82
26 6 0.16
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (24 bp):
ATGTAACGGGAAGCTCTTTGAGCT
Found at i:69697082 original size:25 final size:25
Alignment explanation
Indices: 69697017--69697089 Score: 85
Period size: 25 Copynumber: 2.9 Consensus size: 25
69697007 GAAGCTTAAG
* *
69697017 AGAGCCAAAT-ATCGAGAAGCTCGTA
1 AGAGCCAAATAAT-GGGAAGCTCATA
* *
69697042 AGAGCCAAATATTGGGATGCTCATA
1 AGAGCCAAATAATGGGAAGCTCATA
*
69697067 AGAGCTAAATAATGGGAAGCTCA
1 AGAGCCAAATAATGGGAAGCTCA
69697090 CGAGATTTGT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
25 39 0.98
26 1 0.03
ACGTcount: A:0.40, C:0.16, G:0.25, T:0.19
Consensus pattern (25 bp):
AGAGCCAAATAATGGGAAGCTCATA
Found at i:69702970 original size:21 final size:21
Alignment explanation
Indices: 69702946--69702992 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
69702936 ATATGAGGAA
*
69702946 AAAAAAACATGAGTGCATACC
1 AAAAAAACATGAGAGCATACC
*
69702967 AAAAAAACATGAGAGTATACC
1 AAAAAAACATGAGAGCATACC
69702988 AAAAA
1 AAAAA
69702993 TATACGAGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.60, C:0.15, G:0.13, T:0.13
Consensus pattern (21 bp):
AAAAAAACATGAGAGCATACC
Found at i:69703001 original size:21 final size:21
Alignment explanation
Indices: 69702946--69703002 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
69702936 ATATGAGGAA
* * *
69702946 AAAAAAACATGAGTGCATACC
1 AAAAAAACACGAGAGTATACC
*
69702967 AAAAAAACATGAGAGTATACC
1 AAAAAAACACGAGAGTATACC
* *
69702988 AAAAATATACGAGAG
1 AAAAAAACACGAGAG
69703003 ACTATTTGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.56, C:0.14, G:0.16, T:0.14
Consensus pattern (21 bp):
AAAAAAACACGAGAGTATACC
Found at i:69705045 original size:27 final size:27
Alignment explanation
Indices: 69705015--69705075 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
69705005 GTGACGAAGT
* *
69705015 CACCAGATACAGAT-ATTGTGGTAGAGC
1 CACCAGAT-CAGATAATCGTGGCAGAGC
*
69705042 CACCAGATCAGATAATCGTGGCATAGC
1 CACCAGATCAGATAATCGTGGCAGAGC
69705069 CACCAGA
1 CACCAGA
69705076 ACGCTTCCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 5 0.17
27 25 0.83
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.18
Consensus pattern (27 bp):
CACCAGATCAGATAATCGTGGCAGAGC
Found at i:69706693 original size:26 final size:26
Alignment explanation
Indices: 69706662--69706717 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
69706652 TGAAATGCCC
69706662 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
69706688 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
69706714 ATCA
1 ATCA
69706718 ATTGTACCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:69712009 original size:27 final size:27
Alignment explanation
Indices: 69711961--69712066 Score: 128
Period size: 27 Copynumber: 3.9 Consensus size: 27
69711951 GCGAGGCTGC
* *
69711961 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
69711988 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
69712014 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
69712041 CAGATAATCGTGGCATAGCCACCAGA
1 CAGAT-ATTGTGGCAGAGCCACCAGA
69712067 ACGCTTCCTC
Statistics
Matches: 71, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
26 8 0.11
27 60 0.85
28 3 0.04
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:69713678 original size:26 final size:26
Alignment explanation
Indices: 69713647--69713702 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
69713637 TGAAATGCCC
69713647 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
69713673 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
69713699 ATCA
1 ATCA
69713703 ATTTGTACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:69717051 original size:15 final size:15
Alignment explanation
Indices: 69717031--69717064 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
69717021 TGTTGTTTCG
69717031 ATTGTTTAATATAT-A
1 ATTGTTT-ATATATGA
69717046 ATTGTTTATATATGA
1 ATTGTTTATATATGA
69717061 ATTG
1 ATTG
69717065 AGTTCGTTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGTTTATATATGA
Found at i:69717278 original size:46 final size:46
Alignment explanation
Indices: 69717218--69717335 Score: 191
Period size: 46 Copynumber: 2.6 Consensus size: 46
69717208 ATCACGAATC
**
69717218 AAATGAATAAGACCATAGTTGAAAGACACTATAGTGACATGACGGA
1 AAATGAATAAGACCATAGTTGAAAGACACTATAGAAACATGACGGA
*
69717264 AAATGAATAAGACCATAGTTGAAAGACACTATAGAAACATGATGGA
1 AAATGAATAAGACCATAGTTGAAAGACACTATAGAAACATGACGGA
* *
69717310 AAATGAATAAGCCCATGGTTGAAAGA
1 AAATGAATAAGACCATAGTTGAAAGA
69717336 TGCCATGGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.19
Consensus pattern (46 bp):
AAATGAATAAGACCATAGTTGAAAGACACTATAGAAACATGACGGA
Found at i:69719151 original size:25 final size:25
Alignment explanation
Indices: 69719117--69719168 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
69719107 CATACTATGA
*
69719117 TACATTATTCAATTATATAAGACAT
1 TACATTATTCAATTATATAAGAAAT
69719142 TACATTATTCAATTATATAAGAAAT
1 TACATTATTCAATTATATAAGAAAT
69719167 TA
1 TA
69719169 ATATGAAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (25 bp):
TACATTATTCAATTATATAAGAAAT
Found at i:69719576 original size:20 final size:20
Alignment explanation
Indices: 69719553--69719609 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
69719543 ATGAGGACAA
* *
69719553 ACCAAAAATCATGAGCGTAT
1 ACCAAAAAACATGAGAGTAT
*
69719573 ACCAAAAAACATTAGAGTAT
1 ACCAAAAAACATGAGAGTAT
* *
69719593 ACCAAAACATATGAGAG
1 ACCAAAAAACATGAGAG
69719610 GCTACTTGAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.51, C:0.18, G:0.14, T:0.18
Consensus pattern (20 bp):
ACCAAAAAACATGAGAGTAT
Found at i:69720528 original size:10 final size:10
Alignment explanation
Indices: 69720513--69720570 Score: 57
Period size: 10 Copynumber: 5.8 Consensus size: 10
69720503 TAACAAAATA
69720513 AGAAAATAGT
1 AGAAAATAGT
*
69720523 AGAAAATAAT
1 AGAAAATAGT
*
69720533 AGTGAAATAGT
1 AG-AAAATAGT
69720544 AGTAAAATAGT
1 AG-AAAATAGT
*
69720555 AAAAAATA--
1 AGAAAATAGT
69720563 AGAAAATA
1 AGAAAATA
69720571 ACAAAAAAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 7 0.17
10 17 0.41
11 17 0.41
ACGTcount: A:0.64, C:0.00, G:0.16, T:0.21
Consensus pattern (10 bp):
AGAAAATAGT
Found at i:69720546 original size:11 final size:11
Alignment explanation
Indices: 69720515--69720555 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
69720505 ACAAAATAAG
69720515 AAAATAGTAG-
1 AAAATAGTAGT
*
69720525 AAAATAATAGT
1 AAAATAGTAGT
*
69720536 GAAATAGTAGT
1 AAAATAGTAGT
69720547 AAAATAGTA
1 AAAATAGTA
69720556 AAAAATAAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.59, C:0.00, G:0.17, T:0.24
Consensus pattern (11 bp):
AAAATAGTAGT
Found at i:69720561 original size:21 final size:21
Alignment explanation
Indices: 69720515--69720589 Score: 57
Period size: 21 Copynumber: 3.7 Consensus size: 21
69720505 ACAAAATAAG
*
69720515 AAAATAGTAGAAAATAATAGT
1 AAAATAGTAGAAAATAATAGA
* *
69720536 GAAATAGTAGTAAAATAGTA-A
1 AAAATAGTAG-AAAATAATAGA
* *
69720557 AAAATA--AGAAAATAACAAA
1 AAAATAGTAGAAAATAATAGA
* *
69720576 AAAAGAGTAAAAAA
1 AAAATAGTAGAAAA
69720590 ATGATATTCA
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
18 7 0.17
19 8 0.19
21 19 0.45
22 8 0.19
ACGTcount: A:0.68, C:0.01, G:0.13, T:0.17
Consensus pattern (21 bp):
AAAATAGTAGAAAATAATAGA
Found at i:69724971 original size:16 final size:16
Alignment explanation
Indices: 69724950--69724981 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
69724940 TTTGACTGGG
*
69724950 AAAATATATATTGAAT
1 AAAATATAGATTGAAT
69724966 AAAATATAGATTGAAT
1 AAAATATAGATTGAAT
69724982 TTCAAAATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.34
Consensus pattern (16 bp):
AAAATATAGATTGAAT
Found at i:69727094 original size:30 final size:29
Alignment explanation
Indices: 69727038--69727095 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 29
69727028 TAAATATAAA
69727038 ATTATAAATTATCATGAATATACATTTATG
1 ATTATAAATTAT-ATGAATATACATTTATG
*
69727068 ATTATAAATT-TATTGAATTATTCATTTA
1 ATTATAAATTATA-TGAA-TATACATTTA
69727096 CCTTTTGTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 1 0.04
29 5 0.20
30 19 0.76
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.48
Consensus pattern (29 bp):
ATTATAAATTATATGAATATACATTTATG
Found at i:69727356 original size:11 final size:11
Alignment explanation
Indices: 69727340--69727369 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
69727330 TTAAACGTTT
69727340 TTTTTTTACAA
1 TTTTTTTACAA
69727351 TTTTTTTACAA
1 TTTTTTTACAA
*
69727362 TTATTTTA
1 TTTTTTTA
69727370 TTATCAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTTTTTACAA
Found at i:69732858 original size:46 final size:47
Alignment explanation
Indices: 69732706--69732926 Score: 195
Period size: 46 Copynumber: 4.7 Consensus size: 47
69732696 ATTTGTGTGT
* * * *
69732706 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATG-A
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGTA
* * *
69732752 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACAGT-GAGAC-TA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCGAGACGTA
* **
69732800 GAGCTAGTGTAAGACATGTCTATGACATGCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
* * *
69732847 -AGCCAGTGTAAGACATGTCTGGGACATGCACCGG-TTACGAGATG-A
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTA
* *
69732892 TAGTCAGTGTAAGACCATGTCTGGGACATGACATC
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATC
69732927 AGCACCTTAC
Statistics
Matches: 143, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
45 3 0.02
46 72 0.50
47 43 0.30
48 24 0.17
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
Found at i:69734673 original size:18 final size:18
Alignment explanation
Indices: 69734650--69734687 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
69734640 TCAAGTGTTG
69734650 AAATGGTATAAGCTTACT
1 AAATGGTATAAGCTTACT
*
69734668 AAATGGTATGAGCTTACT
1 AAATGGTATAAGCTTACT
69734686 AA
1 AA
69734688 GTATTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (18 bp):
AAATGGTATAAGCTTACT
Found at i:69736267 original size:17 final size:17
Alignment explanation
Indices: 69736241--69736278 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
69736231 TTGAATAATT
69736241 AAAT-AAGAAGAAAATA
1 AAATAAAGAAGAAAATA
*
69736257 AAATAAAGAAGAACATA
1 AAATAAAGAAGAAAATA
69736274 AAATA
1 AAATA
69736279 GATAGATGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.74, C:0.03, G:0.11, T:0.13
Consensus pattern (17 bp):
AAATAAAGAAGAAAATA
Found at i:69748002 original size:12 final size:13
Alignment explanation
Indices: 69747985--69748016 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
69747975 ATAGCACATT
69747985 TCAAAAC-ATGCA
1 TCAAAACTATGCA
69747997 TCAAAACTATGCA
1 TCAAAACTATGCA
69748010 -CAAAACT
1 TCAAAACT
69748017 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:69755158 original size:12 final size:13
Alignment explanation
Indices: 69755141--69755172 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
69755131 ATAGCACATT
69755141 TCAAAAC-ATGCA
1 TCAAAACTATGCA
69755153 TCAAAACTATGCA
1 TCAAAACTATGCA
69755166 -CAAAACT
1 TCAAAACT
69755173 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:69757099 original size:93 final size:94
Alignment explanation
Indices: 69756936--69757146 Score: 343
Period size: 93 Copynumber: 2.3 Consensus size: 94
69756926 TGTTTCAACT
* * *
69756936 AGGATTTAGCCTGGACTGGTAATAATAATTGACTGGATTTTAGCCTAGACTGGTAATCTAGATTT
1 AGGATTTAGCCTGGACTGGTAATCATAATTGACTAGATTTTAGCCTAGACTGGTAATCCAGATTT
69757001 GACTCTATAGGGAATTCTCTGTCATATAA
66 GACTCTATAGGGAATTCTCTGTCATATAA
* * * *
69757030 AGGATTTAGCCTAGACTAGTAATCTTAATTGACTAGA-TTTAGCCTGGACTGGTAATCCAGATTT
1 AGGATTTAGCCTGGACTGGTAATCATAATTGACTAGATTTTAGCCTAGACTGGTAATCCAGATTT
*
69757094 GACTCTATAGGGAATTCTTTGTCATATAA
66 GACTCTATAGGGAATTCTCTGTCATATAA
69757123 AGGATTTAGCCTGGACTGGTAATC
1 AGGATTTAGCCTGGACTGGTAATC
69757147 CGACAAAGCC
Statistics
Matches: 107, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
93 75 0.70
94 32 0.30
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (94 bp):
AGGATTTAGCCTGGACTGGTAATCATAATTGACTAGATTTTAGCCTAGACTGGTAATCCAGATTT
GACTCTATAGGGAATTCTCTGTCATATAA
Found at i:69759680 original size:33 final size:33
Alignment explanation
Indices: 69759643--69759710 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
69759633 AGGCTGCTAC
* *
69759643 AGCT-CCCCTTTAGTAAAAGTCATTTTCAATTTA
1 AGCTCCCCCTATA-TAAAAATCATTTTCAATTTA
69759676 AGCTCCCCCTATATAAAAATCATTTTCAATTTA
1 AGCTCCCCCTATATAAAAATCATTTTCAATTTA
69759709 AG
1 AG
69759711 GTATAAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 25 0.78
34 7 0.22
ACGTcount: A:0.34, C:0.22, G:0.07, T:0.37
Consensus pattern (33 bp):
AGCTCCCCCTATATAAAAATCATTTTCAATTTA
Found at i:69760090 original size:15 final size:15
Alignment explanation
Indices: 69760065--69760105 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
69760055 TTGGGTCCAT
69760065 AATCATTAGTCTTCAA
1 AATC-TTAGTCTTCAA
69760081 AATCTTAGTCTTCAA
1 AATCTTAGTCTTCAA
69760096 AATCTTAGTC
1 AATCTTAGTC
69760106 CCTTTAGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 21 0.84
16 4 0.16
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (15 bp):
AATCTTAGTCTTCAA
Found at i:69764569 original size:23 final size:23
Alignment explanation
Indices: 69764539--69764625 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
69764529 GCTTTACTGA
* *
69764539 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
69764562 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
69764583 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
69764605 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
69764626 ACTGTACTAT
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
21 35 0.64
22 2 0.04
23 18 0.33
ACGTcount: A:0.15, C:0.22, G:0.25, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:69772805 original size:50 final size:48
Alignment explanation
Indices: 69772644--69772821 Score: 184
Period size: 50 Copynumber: 3.7 Consensus size: 48
69772634 GGTATAATGC
* * *
69772644 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATC-C-ATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACAATCGAGT
* * * * *
69772691 CGATGCCATGTCCCAGATACGGTCTTACA-TTGACTATCGA-AATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTC-ACAATCGA-GT
* *
69772740 CGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACA-AT-CGAGT
69772790 CGATGCCATGTCCCAGACATGGTCTTACACTA
1 CGATGCCATGTCCCAGACATGGTCTTACACTA
69772822 ACACATCTCG
Statistics
Matches: 107, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
46 4 0.04
47 28 0.26
48 5 0.05
49 32 0.30
50 36 0.34
51 2 0.02
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAATCGAGT
Found at i:69772913 original size:46 final size:48
Alignment explanation
Indices: 69772642--69772910 Score: 204
Period size: 46 Copynumber: 5.7 Consensus size: 48
69772632 AGGGTATAAT
* * *
69772642 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGC-T-CATCCATC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACAT-C-TCGAG
* * * * **
69772689 GTCGATGCCATGTCCCAGATACGGTCTTACA-TTGAC-TATCGAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTTA-C-ATCTCGAG
* * *
69772738 GCCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCG-T
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-T-ACATCT-CGAG
* *
69772788 GTCGATGCCATGTCCCAGACATGGTCTTACACTAAC--ACATCTCGTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCG-AG
* * *
69772834 GCCAATG-CATGTCCCAGACAT-GTATTACACTGGCTTACATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAG
*
69772880 GCCGATG-CATGTCCTAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
69772911 GGCACACAAA
Statistics
Matches: 180, Mismatches: 27, Indels: 31
0.76 0.11 0.13
Matches are distributed among these distances:
44 10 0.06
45 17 0.09
46 48 0.27
47 29 0.16
48 2 0.01
49 30 0.17
50 39 0.22
51 4 0.02
52 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAG
Found at i:69774849 original size:153 final size:153
Alignment explanation
Indices: 69774571--69774871 Score: 530
Period size: 153 Copynumber: 2.0 Consensus size: 153
69774561 GCGCAAAGCC
* * *
69774571 ATACTTACTTTCTAGTTGGACATTTAATTGGATATCAGAAACCCTCATGATCTTTTGAGCTACAC
1 ATACTTACTTTCTAGTTGGACATTTAATTGGACACCAGAAACCCTCATGATCTTTTGAACTACAC
69774636 CAATAACATTTCACAACAGGTAAGAGATCAATTGTACTCTTTCTTTCATTTGACCATCTCTTCTT
66 CAATAACATTTCACAACAGGTAAGAGATCAATTGTACTCTTTCTTTCATTTGACCATCTCTTCTT
69774701 AAAGTACTCATCAATTGAAAGTT
131 AAAGTACTCATCAATTGAAAGTT
69774724 ATACTTACTTTCTAGTTGGACATTTAATTGGACACCAGAAACCCTCATGATCTTTTGAACTACAC
1 ATACTTACTTTCTAGTTGGACATTTAATTGGACACCAGAAACCCTCATGATCTTTTGAACTACAC
* * *
69774789 CAATAACATTTCACAACATGTGAGAGATCAATTGTACTCTTTCTTTCGTTTGACCATCTCTTCTT
66 CAATAACATTTCACAACAGGTAAGAGATCAATTGTACTCTTTCTTTCATTTGACCATCTCTTCTT
* *
69774854 GAAGTAGTCATCAATTGA
131 AAAGTACTCATCAATTGA
69774872 TCGATTGCCT
Statistics
Matches: 140, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
153 140 1.00
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (153 bp):
ATACTTACTTTCTAGTTGGACATTTAATTGGACACCAGAAACCCTCATGATCTTTTGAACTACAC
CAATAACATTTCACAACAGGTAAGAGATCAATTGTACTCTTTCTTTCATTTGACCATCTCTTCTT
AAAGTACTCATCAATTGAAAGTT
Found at i:69787341 original size:16 final size:15
Alignment explanation
Indices: 69787304--69787344 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 15
69787294 TTTTTAGTTA
69787304 CTATTATTATTATTTT
1 CTATT-TTATTATTTT
69787320 C-A-TTTATTATTTT
1 CTATTTTATTATTTT
69787333 CTTATTTTATTA
1 C-TATTTTATTA
69787345 CTTAGTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 11 0.50
14 1 0.05
15 2 0.09
16 8 0.36
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.68
Consensus pattern (15 bp):
CTATTTTATTATTTT
Found at i:69797366 original size:9 final size:9
Alignment explanation
Indices: 69797349--69797395 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
69797339 AATTATTATA
*
69797349 TTTCCTTTT
1 TTTCTTTTT
69797358 TTTCTTTTT
1 TTTCTTTTT
*
69797367 TTTC-TTTC
1 TTTCTTTTT
69797375 TTTCTTTCTT
1 TTTCTTT-TT
69797385 TTT-TTTTT
1 TTTCTTTTT
69797393 TTT
1 TTT
69797396 TGTGAAATGT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
8 12 0.36
9 17 0.52
10 4 0.12
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTCTTTTT
Found at i:69802868 original size:44 final size:44
Alignment explanation
Indices: 69802805--69802892 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
69802795 TGATAAAATA
69802805 AAATCCTAAGTGTCTAGCCTTCATCTTTTTCACCTATTCTTTCT
1 AAATCCTAAGTGTCTAGCCTTCATCTTTTTCACCTATTCTTTCT
*
69802849 AAATCCTAAGTGTCTAGCCTTTATCTTTTTCACCTATTCTTTCT
1 AAATCCTAAGTGTCTAGCCTTCATCTTTTTCACCTATTCTTTCT
69802893 TTCTAACCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.20, C:0.26, G:0.07, T:0.47
Consensus pattern (44 bp):
AAATCCTAAGTGTCTAGCCTTCATCTTTTTCACCTATTCTTTCT
Found at i:69803883 original size:46 final size:46
Alignment explanation
Indices: 69803708--69803926 Score: 189
Period size: 46 Copynumber: 4.7 Consensus size: 46
69803698 TCACTTGTAT
* * * * *
69803708 GAGCTAGTGTAAGACATGTCTTGGACATGCATCGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGA
* * *
69803754 GAGCCATTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGA
* * * * *
69803802 GTGCTAGTGTAAGACATGTCTGGGACTTACTTCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-A
69803849 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTAC-A-A-GA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGA
* *
69803891 TGTGTCAGTGTAAGACCATGTCTGGGACATGGCATC
1 -GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
69803927 AGCACAAATA
Statistics
Matches: 141, Mismatches: 23, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 12 0.09
45 17 0.12
46 60 0.43
47 27 0.19
48 22 0.16
49 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGA
Found at i:69827025 original size:38 final size:38
Alignment explanation
Indices: 69826983--69827070 Score: 104
Period size: 40 Copynumber: 2.3 Consensus size: 38
69826973 GTCCAACCCA
* *
69826983 ACACACCATGTGGGGATAAAATTGACCCACCCATCCCT
1 ACACACCATATGGGGATAAAATTGACCCACCCAGCCCT
* * * *
69827021 ACACACCAAATATGGGGATAAAATTTACCCATCTAGCCTT
1 ACACACC--ATATGGGGATAAAATTGACCCACCCAGCCCT
69827061 ACACACCATA
1 ACACACCATA
69827071 AAGTACCCTA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
38 10 0.24
40 32 0.76
ACGTcount: A:0.36, C:0.31, G:0.12, T:0.20
Consensus pattern (38 bp):
ACACACCATATGGGGATAAAATTGACCCACCCAGCCCT
Found at i:69827064 original size:40 final size:40
Alignment explanation
Indices: 69826993--69827068 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
69826983 ACACACCATG
*
69826993 TGGGGATAAAATTGACCCACCCATCCCTACACACCAAATA
1 TGGGGATAAAATTGACCCACCCAGCCCTACACACCAAATA
* * * *
69827033 TGGGGATAAAATTTACCCATCTAGCCTTACACACCA
1 TGGGGATAAAATTGACCCACCCAGCCCTACACACCA
69827069 TAAAGTACCC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.36, C:0.30, G:0.13, T:0.21
Consensus pattern (40 bp):
TGGGGATAAAATTGACCCACCCAGCCCTACACACCAAATA
Found at i:69828741 original size:48 final size:48
Alignment explanation
Indices: 69828670--69829039 Score: 399
Period size: 48 Copynumber: 7.7 Consensus size: 48
69828660 TATGTGTGCT
69828670 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCC
*
69828718 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCC
* * * ** * * *
69828766 AATGTAAGACAATGTCTGGGACATGACATCGGCGTTGA-TATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-ATTATGAGAGCC
* * * *
69828814 AGTATAAGACCATGTCTGGGACATGGCATCGACCACATTATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCC
*
69828862 AGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TCAATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-ATTATGAGAGCC
* * * ** * * *
69828910 AGTGTAAAACCATGTTTGGAACATGGCATC-GATATTGTTAT-ATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-TATTATGA-GAGCC
* ***
69828958 AGTGTAAGACCATGTTTGGGACATGGCATC-AAAACTGATGTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-T-AT-TATGAGAGCC
*
69829008 AGTGTAAGACCATGTCCGGGACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
69829040 TATTTTACCC
Statistics
Matches: 267, Mismatches: 45, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
47 3 0.01
48 226 0.85
49 3 0.01
50 34 0.13
51 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCC
Found at i:69828916 original size:144 final size:144
Alignment explanation
Indices: 69828655--69829039 Score: 533
Period size: 144 Copynumber: 2.7 Consensus size: 144
69828645 AAGACATTTG
* *
69828655 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAG
* *
69828720 TGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAATGTAAGACAATGTCTGG
66 TGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAATGTAAAACAATGTCTGG
* *
69828785 GACATGACATCGGC
131 AACATGACATCGAC
* *
69828799 GTTGATATGTGTGCTAGTATAAGACCATGTCTGGGACATGGCATCGACCACATTATGTGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAG
* * * *
69828864 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGAGAGCCAGTGTAAAACCATGTTTGG
66 TGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAATGTAAAACAATGTCTGG
* *
69828929 AACATGGCATCGAT
131 AACATGACATCGAC
* * **
69828943 ATTGTTATATGTGT-C-AGTGTAAGACCATGTTTGGGACATGGCATC-AAAACTGATGTATGAGA
1 GTTG--ATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCAC--AT-TATGAGA
*
69829005 GCCAGTGTAAGACCATGTCCGGGACATGGCATCGG
61 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
69829040 TATTTTACCC
Statistics
Matches: 215, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
143 3 0.01
144 161 0.75
145 3 0.01
146 48 0.22
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (144 bp):
GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAG
TGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAATGTAAAACAATGTCTGG
AACATGACATCGAC
Found at i:69851433 original size:60 final size:60
Alignment explanation
Indices: 69851305--69851435 Score: 140
Period size: 60 Copynumber: 2.2 Consensus size: 60
69851295 ATGTTTTTGT
* * * *
69851305 TACTCTCACATTTTATGGTATCCACTCATCTTTTTTGGTTTGTCCTCATATTTATTGATA
1 TACTCTCATATTTTATGCTATCCACTCATCTTTTTTGGTTTGTCATCATATGTATTGATA
* * * * * *
69851365 -ACCCCTCATGTTTTATGCTATGCACTCATGCTTTTTT-GTTTGTCATTATGTGTGTTGATA
1 TA-CTCTCATATTTTATGCTATCCACTCAT-CTTTTTTGGTTTGTCATCATATGTATTGATA
69851425 TACTCTCATAT
1 TACTCTCATAT
69851436 ATTTTGGTAA
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
59 1 0.02
60 47 0.84
61 8 0.14
ACGTcount: A:0.19, C:0.20, G:0.12, T:0.49
Consensus pattern (60 bp):
TACTCTCATATTTTATGCTATCCACTCATCTTTTTTGGTTTGTCATCATATGTATTGATA
Found at i:69851664 original size:19 final size:19
Alignment explanation
Indices: 69851636--69851705 Score: 79
Period size: 19 Copynumber: 3.6 Consensus size: 19
69851626 TCTCATGTTT
*
69851636 TTTTTAGTATATTCTCATA
1 TTTTTGGTATATTCTCATA
*
69851655 TTTTTGGTATATTCTCAGA
1 TTTTTGGTATATTCTCATA
*
69851674 TTTTTTG-ATATTCTCTCATA
1 TTTTTGGTATA-T-TCTCATA
69851694 TTTTTTGGTATA
1 -TTTTTGGTATA
69851706 CCCTCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
18 3 0.07
19 24 0.57
20 6 0.14
21 6 0.14
22 3 0.07
ACGTcount: A:0.21, C:0.10, G:0.10, T:0.59
Consensus pattern (19 bp):
TTTTTGGTATATTCTCATA
Found at i:69851678 original size:20 final size:20
Alignment explanation
Indices: 69851635--69851705 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
69851625 ATCTCATGTT
*
69851635 TTTTTTAGTATATTCTCATA
1 TTTTTTGGTATATTCTCATA
*
69851655 -TTTTTGGTATATTCTCAGA
1 TTTTTTGGTATATTCTCATA
*
69851674 TTTTTTGATAT-TCTCTCATA
1 TTTTTTGGTATAT-TCTCATA
69851694 TTTTTTGGTATA
1 TTTTTTGGTATA
69851706 CCCTCAAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
19 18 0.42
20 25 0.58
ACGTcount: A:0.21, C:0.10, G:0.10, T:0.59
Consensus pattern (20 bp):
TTTTTTGGTATATTCTCATA
Found at i:69851697 original size:18 final size:20
Alignment explanation
Indices: 69851648--69851697 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 20
69851638 TTTAGTATAT
69851648 TCTCATATTTTTGGTATATTC
1 TCTCATA-TTTTGGTATATTC
** *
69851669 TCAGAT-TTTTTG-ATATTC
1 TCTCATATTTTGGTATATTC
69851687 TCTCATATTTT
1 TCTCATATTTT
69851698 TTGGTATACC
Statistics
Matches: 23, Mismatches: 5, Indels: 4
0.72 0.16 0.12
Matches are distributed among these distances:
18 10 0.43
19 9 0.39
21 4 0.17
ACGTcount: A:0.20, C:0.14, G:0.08, T:0.58
Consensus pattern (20 bp):
TCTCATATTTTGGTATATTC
Found at i:69851722 original size:40 final size:39
Alignment explanation
Indices: 69851648--69851724 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 39
69851638 TTTAGTATAT
** * * *
69851648 TCTCATATTTTTGGTATATTCTCAGATTTTTTGATATTC
1 TCTCATATTTTTGGTATACCCTCAAAATTGTTGATATTC
69851687 TCTCATATTTTTTGGTATACCCTCAAAATTGTTGATAT
1 TCTCATA-TTTTTGGTATACCCTCAAAATTGTTGATAT
69851725 AGTTTCAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
39 7 0.22
40 25 0.78
ACGTcount: A:0.23, C:0.14, G:0.10, T:0.52
Consensus pattern (39 bp):
TCTCATATTTTTGGTATACCCTCAAAATTGTTGATATTC
Found at i:69851937 original size:237 final size:237
Alignment explanation
Indices: 69851474--69851943 Score: 569
Period size: 237 Copynumber: 2.0 Consensus size: 237
69851464 AAACTTTCAT
** * * *** *
69851474 AATTGTTAATATAGTTTCATTATTAGAATTTGGTAAGATATATAATTTTAAGCTAAAATTTTGTG
1 AATTGTTAATATAGTTTCAAAATTAGAATTTAGTAAGAGATAT-ATCAAAAACTAAAATTTTGT-
* * *
69851539 AGAGATAAACTAAATTTAATCATAATTTTTTAAAAATGAAATTTATATAAACTAACAAATTTCTT
64 AGAGATAAACTAAATTTAATCATAATTTTTTAAAAATAAAATTTAAATAAACTAACAAATTTCCT
* * *
69851604 AATATGAACCAAAATTGGTACATCTCATGTTTTTTTTAGTATATTCTCATATTTTTGGTATATTC
129 AATATGAACCAAAATTGGTACATATCATGTTTTTTATAGTATATTCTCAAATTTTTGGTATATTC
* *
69851669 TCAGATTTTTTGATATTCTCTCATATTTTTTGGTATACCCTCAA
194 TCAGATTTTTTGATATACTCTCATATTTTTTGATATACCCTCAA
*
69851713 AATTGTTGATATAGTTTCAAAATTAGAATTTAGTAAGAGATAT-TCAAAAACATAAAATTTTGT-
1 AATTGTTAATATAGTTTCAAAATTAGAATTTAGTAAGAGATATATCAAAAAC-TAAAATTTTGTA
* * * *
69851776 GAGATAAAGTAAATTTAATTATAAATTTTTTAAAAAATAAAATTTAAATAAATTAAGAAATTTCC
65 GAGATAAACTAAATTTAATCAT-AATTTTTT-AAAAATAAAATTTAAATAAACTAACAAATTTCC
*
69851841 TAATATGAACC-AAATTGGTGCATATCATG-TTTTTAT-G-ATATTCCCTCACAATTTTTGGTAT
128 TAATATGAACCAAAATTGGTACATATCATGTTTTTTATAGTATATT--CTCA-AATTTTTGGTAT
* * *
69851902 -TTGCTCATATTTTTTGGTA-ACTCTCATGTTTTTTTGATATAC
190 ATT-CTCAGATTTTTTGATATACTCTCAT-ATTTTTTGATATAC
69851944 TCAGATTTTT
Statistics
Matches: 198, Mismatches: 25, Indels: 18
0.82 0.10 0.07
Matches are distributed among these distances:
234 5 0.03
235 1 0.01
236 39 0.20
237 65 0.33
238 50 0.25
239 38 0.19
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44
Consensus pattern (237 bp):
AATTGTTAATATAGTTTCAAAATTAGAATTTAGTAAGAGATATATCAAAAACTAAAATTTTGTAG
AGATAAACTAAATTTAATCATAATTTTTTAAAAATAAAATTTAAATAAACTAACAAATTTCCTAA
TATGAACCAAAATTGGTACATATCATGTTTTTTATAGTATATTCTCAAATTTTTGGTATATTCTC
AGATTTTTTGATATACTCTCATATTTTTTGATATACCCTCAA
Found at i:69851994 original size:40 final size:41
Alignment explanation
Indices: 69851950--69852040 Score: 98
Period size: 40 Copynumber: 2.2 Consensus size: 41
69851940 ATACTCAGAT
* *
69851950 TTTTTTGGTA-TCTTGTCATA-ATTTTTGATAT-CCCGTCATG
1 TTTTTTGGTAGTC-TCTCATATA-TTTTGATATACCCGTCATC
* * *
69851990 TTTTTAGGTAGTCTCTCATATATTTTGATATACCCTTTATC
1 TTTTTTGGTAGTCTCTCATATATTTTGATATACCCGTCATC
69852031 TTTTTTGGTA
1 TTTTTTGGTA
69852041 CACATTCATG
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
40 24 0.57
41 18 0.43
ACGTcount: A:0.19, C:0.14, G:0.13, T:0.54
Consensus pattern (41 bp):
TTTTTTGGTAGTCTCTCATATATTTTGATATACCCGTCATC
Found at i:69859033 original size:20 final size:20
Alignment explanation
Indices: 69859010--69859085 Score: 64
Period size: 20 Copynumber: 3.8 Consensus size: 20
69859000 TCGAATTTCT
69859010 TCATGTTTTTTGGTCAC-CAC
1 TCATGTTTTTTGGT-ACTCAC
*
69859030 TCATAATTTTTTGGTACTCAC
1 TCAT-GTTTTTTGGTACTCAC
* * * *
69859051 CCATGTTTTTCGGTATTCCC
1 TCATGTTTTTTGGTACTCAC
* *
69859071 TCGTATTTTTTGGTA
1 TCATGTTTTTTGGTA
69859086 AACTCTCAGA
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
20 29 0.66
21 15 0.34
ACGTcount: A:0.16, C:0.21, G:0.14, T:0.49
Consensus pattern (20 bp):
TCATGTTTTTTGGTACTCAC
Found at i:69859060 original size:21 final size:20
Alignment explanation
Indices: 69859011--69859060 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
69859001 CGAATTTCTT
*
69859011 CATGTTTTTTGGTCACCACT
1 CATGTTTTTTGGTCACCACC
*
69859031 CATAATTTTTTGGT-ACTCACC
1 CAT-GTTTTTTGGTCAC-CACC
69859052 CATGTTTTT
1 CATGTTTTT
69859061 CGGTATTCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.18, C:0.22, G:0.12, T:0.48
Consensus pattern (20 bp):
CATGTTTTTTGGTCACCACC
Found at i:69861283 original size:26 final size:26
Alignment explanation
Indices: 69861254--69861314 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
69861244 TATACAGAGC
* *
69861254 TCCTAATTAAAGGCTCTTTGTCAGCT
1 TCCTAATTAAAAGCTCTTTGTCAACT
* *
69861280 TCCTAATTAAAAGTTCTTTGTGAACT
1 TCCTAATTAAAAGCTCTTTGTCAACT
*
69861306 TCCTGATTA
1 TCCTAATTA
69861315 TGGCTCTAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.26, C:0.20, G:0.13, T:0.41
Consensus pattern (26 bp):
TCCTAATTAAAAGCTCTTTGTCAACT
Found at i:69864432 original size:36 final size:36
Alignment explanation
Indices: 69864392--69864499 Score: 112
Period size: 36 Copynumber: 2.9 Consensus size: 36
69864382 ATGGAAATAT
69864392 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
* *
69864428 AATC-TT-AGATATAATACAATCTTAGATATGATATGC
1 AATCTTTAAG-GAT-ATGCAATCTTAGATATGATATGC
* *
69864464 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT-TA-AGGATATGCAATCTT--AGATATGAT
69864500 CTTGTAATCT
Statistics
Matches: 58, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
34 2 0.03
35 4 0.07
36 30 0.52
37 1 0.02
38 9 0.16
39 2 0.03
40 10 0.17
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (36 bp):
AATCTTTAAGGATATGCAATCTTAGATATGATATGC
Found at i:69864449 original size:17 final size:19
Alignment explanation
Indices: 69864402--69864499 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
69864392 AATCTTTAAG
69864402 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
69864421 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
69864440 -A-ATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
69864457 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
69864476 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
69864497 GAT
1 GAT
69864500 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 15 0.21
18 2 0.03
19 47 0.64
21 9 0.12
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:69866708 original size:6 final size:6
Alignment explanation
Indices: 69866667--69866741 Score: 78
Period size: 6 Copynumber: 12.5 Consensus size: 6
69866657 ATATTGCAAG
* * * * * *
69866667 TTTTCG TTTTCG TTTTCG TTTTCG TTTTCG TTTTCA TTTTCA TTTCCA
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA
* *
69866715 TTTCCA TTTTCA TTTCCA TTTTCA TTT
1 TTTTCA TTTTCA TTTTCA TTTTCA TTT
69866742 CCACTTTTGG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 64 1.00
ACGTcount: A:0.09, C:0.20, G:0.07, T:0.64
Consensus pattern (6 bp):
TTTTCA
Found at i:69866716 original size:12 final size:12
Alignment explanation
Indices: 69866697--69866749 Score: 79
Period size: 12 Copynumber: 4.3 Consensus size: 12
69866687 TTCGTTTTCG
*
69866697 TTTTCATTTTCA
1 TTTTCATTTCCA
*
69866709 TTTCCATTTCCA
1 TTTTCATTTCCA
69866721 TTTTCATTTCCA
1 TTTTCATTTCCA
69866733 TTTTCATTTCCA
1 TTTTCATTTCCA
69866745 CTTTT
1 -TTTT
69866750 GGAAACCTAC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
12 33 0.89
13 4 0.11
ACGTcount: A:0.15, C:0.25, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTTCATTTCCA
Found at i:69868938 original size:43 final size:43
Alignment explanation
Indices: 69868828--69868953 Score: 110
Period size: 43 Copynumber: 2.8 Consensus size: 43
69868818 TACCACTGGT
* * *
69868828 TTCATAGATAAAATCTGCCACTGGGCTGTGGATACACAGAAAAAA
1 TTCACAGATAAAATCTGCCACT-GG-TCTGGATGCACAGAAAAAA
* * * *
69868873 TTCATAGATGAAATTTGCCACTGGTCTGGATGCACAG-CAAAA
1 TTCACAGATAAAATCTGCCACTGGTCTGGATGCACAGAAAAAA
* * *
69868915 TATCGCAGATAAAATCTGTCACTGGGCTGTAGATGCACA
1 T-TCACAGATAAAATCTGCCACTGGTCTG--GATGCACA
69868954 ACATTATTGC
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 5 0.07
43 32 0.48
44 2 0.03
45 28 0.42
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (43 bp):
TTCACAGATAAAATCTGCCACTGGTCTGGATGCACAGAAAAAA
Found at i:69868952 original size:45 final size:44
Alignment explanation
Indices: 69868828--69868953 Score: 130
Period size: 45 Copynumber: 2.8 Consensus size: 44
69868818 TACCACTGGT
* *
69868828 TTCATAGATAAAATCTGCCACTGGGCTGTGGATACACAGAAAAAA
1 TTCACAGATAAAATCTGCCACTGGGCTGT-GATGCACAGAAAAAA
* * * * *
69868873 TTCATAGATGAAATTTGCCACTGGTCTG-GATGCACAG-CAAAA
1 TTCACAGATAAAATCTGCCACTGGGCTGTGATGCACAGAAAAAA
* *
69868915 TATCGCAGATAAAATCTGTCACTGGGCTGTAGATGCACA
1 T-TCACAGATAAAATCTGCCACTGGGCTGT-GATGCACA
69868954 ACATTATTGC
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 5 0.07
43 29 0.43
45 33 0.49
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (44 bp):
TTCACAGATAAAATCTGCCACTGGGCTGTGATGCACAGAAAAAA
Found at i:69869153 original size:138 final size:136
Alignment explanation
Indices: 69868905--69869191 Score: 346
Period size: 138 Copynumber: 2.1 Consensus size: 136
69868895 GGTCTGGATG
* * * *
69868905 CACAGCAAAATATCGCAGATAAAATCTGTCACTGGGCTGTAGATGCACAACATTATTGCAGGTAA
1 CACAGCAAAATATCGCAGATAAAATCTGACACTAGGCTGTAAATGCAAAACATTATTGCAGGTAA
* * * *
69868970 AATTTGTCAAAGGGTTATGGATGTATAGCAATTTTTTAGTTAAAGGATAAACACTACCACTAGGT
66 AATTTGT-AAA-GGTTATGGATGTACAGCAAATTTGTAGTTAAAGGATAAACACTACCACTAGGC
*
69869035 TGTGGGAA
129 TATGGGAA
* *
69869043 CACAGCAAAATATCGTAGATAAAATTTGACACTAGGCTGTAAATGCAAAACATTATTGCAGGTAA
1 CACAGCAAAATATCGCAGATAAAATCTGACACTAGGCTGTAAATGCAAAACATTATTGCAGGTAA
* * *
69869108 AAGCTATTG-ATAA-GTTGTGGATGTACA-CTAAATTTGTATTTAAAGGATAAACACTGCCACTA
66 AA--T-TTGTA-AAGGTTATGGATGTACAGC-AAATTTGTAGTTAAAGGATAAACACTACCACTA
* *
69869170 TGCTATGGGTA
126 GGCTATGGGAA
69869181 CACAGCAAAAT
1 CACAGCAAAAT
69869192 GAGTAAATAA
Statistics
Matches: 128, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
137 1 0.01
138 120 0.94
139 1 0.01
140 3 0.02
141 3 0.02
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.28
Consensus pattern (136 bp):
CACAGCAAAATATCGCAGATAAAATCTGACACTAGGCTGTAAATGCAAAACATTATTGCAGGTAA
AATTTGTAAAGGTTATGGATGTACAGCAAATTTGTAGTTAAAGGATAAACACTACCACTAGGCTA
TGGGAA
Found at i:69869715 original size:56 final size:55
Alignment explanation
Indices: 69869637--69869849 Score: 155
Period size: 55 Copynumber: 3.9 Consensus size: 55
69869627 AAAAAATAAG
* * * * * * *
69869637 GGCAAAACTATAGAATCTAAAAATTAGGGGAAAATTGTAAAATTTGAGAAACCG-A
1 GGCAAAATTATAAAATTTAAAAAATAGGGGAAAATTATAAAATCTAAGAAA-CGAA
* *
69869692 GGTAAAATTATAAAATTTAAAAAATAGGAGGAAAACTATAAAATCTAAGAAACGAA
1 GGCAAAATTATAAAATTTAAAAAATAGG-GGAAAATTATAAAATCTAAGAAACGAA
* * * **
69869748 GGCAAATTTGTAAAATTTGAAAAATAGGGGTAAAATGT-T-AAATCTAA-AAAATAA
1 GGCAAAATTATAAAATTTAAAAAATAGGGG-AAAAT-TATAAAATCTAAGAAACGAA
* * * * * * * *
69869802 GGGAAATTTGTAAATTTTAATTAAATAAGGGAAAAATGTAAAATCTAA
1 GGCAAAATTATAAAATTTAA-AAAATAGGGGAAAATTATAAAATCTAA
69869850 AAAAATAAGG
Statistics
Matches: 129, Mismatches: 22, Indels: 14
0.78 0.13 0.08
Matches are distributed among these distances:
53 1 0.01
54 27 0.21
55 51 0.40
56 49 0.38
57 1 0.01
ACGTcount: A:0.53, C:0.05, G:0.17, T:0.25
Consensus pattern (55 bp):
GGCAAAATTATAAAATTTAAAAAATAGGGGAAAATTATAAAATCTAAGAAACGAA
Found at i:69869715 original size:84 final size:84
Alignment explanation
Indices: 69869611--69869767 Score: 201
Period size: 84 Copynumber: 1.9 Consensus size: 84
69869601 CTTTAGGGTC
* * * ** * *
69869611 AAAATTGTAAAGTTTGAAAAAATAAGG-GCAAAACTATAGAATCTAA-AAATTAGGGGAAAATTG
1 AAAATTATAAAATTT-AAAAAAT-AGGAGCAAAACTATAAAATCTAAGAAACGAAGGCAAAATTG
69869674 TAAAATTTGAGAAACCGAGGT
64 TAAAATTTGAGAAACCGAGGT
* *
69869695 AAAATTATAAAATTTAAAAAATAGGAGGAAAACTATAAAATCTAAGAAACGAAGGCAAATTTGTA
1 AAAATTATAAAATTTAAAAAATAGGAGCAAAACTATAAAATCTAAGAAACGAAGGCAAAATTGTA
69869760 AAATTTGA
66 AAATTTGA
69869768 AAAATAGGGG
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
82 3 0.05
83 24 0.39
84 35 0.56
ACGTcount: A:0.53, C:0.06, G:0.17, T:0.24
Consensus pattern (84 bp):
AAAATTATAAAATTTAAAAAATAGGAGCAAAACTATAAAATCTAAGAAACGAAGGCAAAATTGTA
AAATTTGAGAAACCGAGGT
Found at i:69869726 original size:28 final size:27
Alignment explanation
Indices: 69869611--69869853 Score: 137
Period size: 28 Copynumber: 8.8 Consensus size: 27
69869601 CTTTAGGGTC
* *
69869611 AAAATTGTAAAGTTTGAAAAAATAAGGGC
1 AAAATTGTAAAATTT-AAAAAAT-AGGGG
* * * * *
69869640 AAAACTATAGAATCTAAAAATTAGGGG
1 AAAATTGTAAAATTTAAAAAATAGGGG
* * ** *
69869667 AAAATTGTAAAATTTGAGAAACCGAGGT
1 AAAATTGTAAAATTTAAAAAATAG-GGG
*
69869695 AAAATTATAAAATTTAAAAAATAGGAGG
1 AAAATTGTAAAATTTAAAAAATAGG-GG
* * * ** * *
69869723 AAAACTATAAAATCTAAGAAACGAAGGC
1 AAAATTGTAAAATTTAA-AAAATAGGGG
* *
69869751 AAATTTGTAAAATTTGAAAAATAGGGG
1 AAAATTGTAAAATTTAAAAAATAGGGG
* * *
69869778 TAAAA-TGTTAAATCTAAAAAATAAGGG
1 -AAAATTGTAAAATTTAAAAAATAGGGG
* * * *
69869805 AAATTTGTAAATTTTAATTAAATAAGGG
1 AAAATTGTAAAATTTAA-AAAATAGGGG
* *
69869833 AAAAATGTAAAATCTAAAAAA
1 AAAATTGTAAAATTTAAAAAA
69869854 ATAAGGGACA
Statistics
Matches: 155, Mismatches: 53, Indels: 14
0.70 0.24 0.06
Matches are distributed among these distances:
26 3 0.02
27 56 0.36
28 81 0.52
29 15 0.10
ACGTcount: A:0.54, C:0.05, G:0.16, T:0.25
Consensus pattern (27 bp):
AAAATTGTAAAATTTAAAAAATAGGGG
Found at i:69869780 original size:84 final size:81
Alignment explanation
Indices: 69869606--69869800 Score: 194
Period size: 84 Copynumber: 2.3 Consensus size: 81
69869596 ATAAACTTTA
* * ** * *
69869606 GGGTCAAAATTGTAAAGTTTGAAAAAATAAGGGCAAAACTATAGAATCTAAAAATTAGGGGAAAA
1 GGGT-AAAATT-TAAAATTT-AAAAAAT-AGGGCAAAACTATAAAATCTAAAAACGAAGGCAAAA
* *
69869671 TTGTAAAATTTGAGAAACCG
62 TTGTAAAATTTGAAAAACAG
* * *
69869691 AGGTAAAATTATAAAATTTAAAAAATAGGAGGAAAACTATAAAATCTAAGAAACGAAGGCAAATT
1 GGGTAAAATT-TAAAATTTAAAAAATAGG-GCAAAACTATAAAATCTAA-AAACGAAGGCAAAAT
*
69869756 TGTAAAATTTGAAAAATAG
63 TGTAAAATTTGAAAAACAG
*
69869775 GGGTAAAATGTT-AAATCTAAAAAATA
1 GGGTAAAAT-TTAAAATTTAAAAAATA
69869801 AGGGAAATTT
Statistics
Matches: 92, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
82 3 0.03
83 37 0.40
84 48 0.52
85 4 0.04
ACGTcount: A:0.52, C:0.06, G:0.18, T:0.24
Consensus pattern (81 bp):
GGGTAAAATTTAAAATTTAAAAAATAGGGCAAAACTATAAAATCTAAAAACGAAGGCAAAATTGT
AAAATTTGAAAAACAG
Found at i:69869796 original size:83 final size:82
Alignment explanation
Indices: 69869627--69869800 Score: 190
Period size: 83 Copynumber: 2.1 Consensus size: 82
69869617 GTAAAGTTTG
* ** * * * *
69869627 AAAAAATAAGGGCAAAACTATAGAATCTAAAAATTAGGGGAAAATTGTAAAATTTGAGAAACCGA
1 AAAAAAT-AGGGCAAAACTATAAAATCTAAAAACGAAGGCAAAATTGTAAAATTTGAAAAACAGA
*
69869692 GGTAAAATTATAAAATTT
65 GGTAAAATTATAAAATCT
* * *
69869710 AAAAAATAGGAGGAAAACTATAAAATCTAAGAAACGAAGGCAAATTTGTAAAATTTGAAAAATAG
1 AAAAAATAGG-GCAAAACTATAAAATCTAA-AAACGAAGGCAAAATTGTAAAATTTGAAAAACAG
*
69869775 GGGTAAAATGT-T-AAATCT
64 AGGTAAAAT-TATAAAATCT
69869793 AAAAAATA
1 AAAAAATA
69869801 AGGGAAATTT
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
82 3 0.04
83 37 0.49
84 35 0.46
85 1 0.01
ACGTcount: A:0.55, C:0.06, G:0.17, T:0.23
Consensus pattern (82 bp):
AAAAAATAGGGCAAAACTATAAAATCTAAAAACGAAGGCAAAATTGTAAAATTTGAAAAACAGAG
GTAAAATTATAAAATCT
Found at i:69869828 original size:55 final size:54
Alignment explanation
Indices: 69869702--69869861 Score: 169
Period size: 55 Copynumber: 2.9 Consensus size: 54
69869692 GGTAAAATTA
* * * * ** *
69869702 TAAAATTTAAAAAATAGGAGGAAAACTATAAAATCTAAGAAACGAAGGCAAATTTG
1 TAAAATTTGAAAAATAAG-GGAAAAATGTAAAATCTAA-AAAATAAGGGAAATTTG
* * *
69869758 TAAAATTTGAAAAATAGGGGTAAAATGTTAAATCTAAAAAATAAGGGAAATTTG
1 TAAAATTTGAAAAATAAGGGAAAAATGTAAAATCTAAAAAATAAGGGAAATTTG
*
69869812 T-AAATTTTAATTAAATAAGGGAAAAATGTAAAATCTAAAAAAATAAGGGA
1 TAAAATTTGAA--AAATAAGGGAAAAATGTAAAATCT-AAAAAATAAGGGA
69869862 CACACAATCG
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
53 8 0.09
54 15 0.17
55 36 0.40
56 30 0.34
ACGTcount: A:0.55, C:0.04, G:0.16, T:0.25
Consensus pattern (54 bp):
TAAAATTTGAAAAATAAGGGAAAAATGTAAAATCTAAAAAATAAGGGAAATTTG
Found at i:69871033 original size:54 final size:54
Alignment explanation
Indices: 69870962--69871103 Score: 171
Period size: 54 Copynumber: 2.6 Consensus size: 54
69870952 TTTTATTAAT
* * *
69870962 TTATATTTTAATAATAATTATATTAAGAATGTTATTAAATTATATATTTTTT-AAA
1 TTATA-TTTAATAATAATTATATTAA-AATATAATTAAAATATATATTTTTTAAAA
* *
69871017 -TAGTATTTAATAATAATTATGTTAAAATATAATTAAAATATTTATTTTTTAAAA
1 TTA-TATTTAATAATAATTATATTAAAATATAATTAAAATATATATTTTTTAAAA
** *
69871071 TTATATTTAATAATAATCCTATTAAAATTTAAT
1 TTATATTTAATAATAATTATATTAAAATATAAT
69871104 AATAATAACA
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
53 21 0.28
54 50 0.67
55 4 0.05
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (54 bp):
TTATATTTAATAATAATTATATTAAAATATAATTAAAATATATATTTTTTAAAA
Found at i:69871041 original size:26 final size:27
Alignment explanation
Indices: 69870968--69871111 Score: 79
Period size: 27 Copynumber: 5.4 Consensus size: 27
69870958 TAATTTATAT
69870968 TTTAATAATAATTATATTAAGAATGTTA
1 TTTAATAATAATTATATTAA-AATGTTA
* * *
69870996 TTAAATTATATATT-T-TTTAAATAG-TA
1 TTTAATAATA-ATTATATTAAAAT-GTTA
* *
69871022 TTTAATAATAATTATGTTAAAAT-ATA
1 TTTAATAATAATTATATTAAAATGTTA
* * *
69871048 ATTAA-AATATTTATTTTTTAAAAT-TATA
1 TTTAATAATAATTA--TATTAAAATGT-TA
**
69871076 TTTAATAATAATCCTATTAAAAT-TTA
1 TTTAATAATAATTATATTAAAATGTTA
*
69871102 -ATAATAATAA
1 TTTAATAATAA
69871112 CAATAATCAT
Statistics
Matches: 91, Mismatches: 16, Indels: 21
0.71 0.12 0.16
Matches are distributed among these distances:
25 19 0.21
26 22 0.24
27 27 0.30
28 15 0.16
29 8 0.09
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (27 bp):
TTTAATAATAATTATATTAAAATGTTA
Found at i:69871044 original size:27 final size:25
Alignment explanation
Indices: 69870963--69871087 Score: 83
Period size: 26 Copynumber: 4.6 Consensus size: 25
69870953 TTTATTAATT
69870963 TATATTTTAATAATAATTATATTAAGAA
1 TATA-TTTAATAATAATTAT-TTAA-AA
* * * *
69870991 TGTTATTAAATTATATATT-TTTTAAA
1 T-ATATTTAATAATA-ATTATTTAAAA
69871017 TAGTATTTAATAATAATTATGTTAAAA
1 TA-TATTTAATAATAATTAT-TTAAAA
* *
69871044 TATAATTAA-AATATTTATTTTTTAAAA
1 TATATTTAATAATA---ATTATTTAAAA
69871071 TTATATTTAATAATAAT
1 -TATATTTAATAATAAT
69871088 CCTATTAAAA
Statistics
Matches: 76, Mismatches: 11, Indels: 22
0.70 0.10 0.20
Matches are distributed among these distances:
25 7 0.09
26 22 0.29
27 16 0.21
28 22 0.29
29 9 0.12
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.50
Consensus pattern (25 bp):
TATATTTAATAATAATTATTTAAAA
Found at i:69877646 original size:17 final size:18
Alignment explanation
Indices: 69877626--69877662 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
69877616 CAGAGCAGGG
69877626 AAAGAAAAA-AAAAGAAA
1 AAAGAAAAAGAAAAGAAA
*
69877643 AAAGAAAAAGAAAGGAAA
1 AAAGAAAAAGAAAAGAAA
69877661 AA
1 AA
69877663 TAGGGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (18 bp):
AAAGAAAAAGAAAAGAAA
Found at i:69880326 original size:12 final size:13
Alignment explanation
Indices: 69880306--69880330 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69880296 TTAAAAATAA
69880306 TTAGAAAAAAAAG
1 TTAGAAAAAAAAG
69880319 TTAGAAAAAAAA
1 TTAGAAAAAAAA
69880331 TTAAATTGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (13 bp):
TTAGAAAAAAAAG
Found at i:69882262 original size:22 final size:21
Alignment explanation
Indices: 69882214--69882262 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
69882204 TGTCAATTTT
*
69882214 TTTAAATTTAAAAATAAAGAG
1 TTTAAATTTAAAAATAAAGAA
*
69882235 TCTAAATTCTAAAAATAAA-AA
1 TTTAAATT-TAAAAATAAAGAA
69882256 TATTAAA
1 T-TTAAA
69882263 CTAAATTCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (21 bp):
TTTAAATTTAAAAATAAAGAA
Found at i:69883890 original size:31 final size:32
Alignment explanation
Indices: 69883850--69883925 Score: 77
Period size: 31 Copynumber: 2.4 Consensus size: 32
69883840 AAGAATTTTA
* *
69883850 AATTTTTTATATTTTCAAAAGGCTAGCATTT-T
1 AATTATTTATATTTTCAAAAGG-AAGCATTTGT
** *
69883882 AA-TATTTATAAATTCAAAATGAAGCATTTGT
1 AATTATTTATATTTTCAAAAGGAAGCATTTGT
69883913 AATTATTT-TATTT
1 AATTATTTATATTT
69883926 GAATAAATAA
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
30 7 0.20
31 21 0.60
32 7 0.20
ACGTcount: A:0.37, C:0.07, G:0.08, T:0.49
Consensus pattern (32 bp):
AATTATTTATATTTTCAAAAGGAAGCATTTGT
Found at i:69884018 original size:19 final size:16
Alignment explanation
Indices: 69883976--69884026 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
69883966 TTTACTAATT
69883976 AAAAAATAATTATAAA
1 AAAAAATAATTATAAA
*
69883992 AAAGAATAATTATATTAA
1 AAAAAATAATTATA--AA
69884010 AAATAAATAA-TATAAA
1 AAA-AAATAATTATAAA
69884026 A
1 A
69884027 TATTCAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
16 16 0.53
18 9 0.30
19 5 0.17
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (16 bp):
AAAAAATAATTATAAA
Found at i:69884072 original size:18 final size:18
Alignment explanation
Indices: 69884049--69884092 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
69884039 ATATAATTGT
*
69884049 AATTTTAAAATTTATTAA
1 AATTTTAAAATTTAATAA
*
69884067 AATTTT-TAATTTAATAA
1 AATTTTAAAATTTAATAA
69884084 AATTTTAAA
1 AATTTTAAA
69884093 TATATATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AATTTTAAAATTTAATAA
Found at i:69884623 original size:12 final size:12
Alignment explanation
Indices: 69884606--69884630 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69884596 TATTAAACCT
69884606 ATATATATACAC
1 ATATATATACAC
69884618 ATATATATACAC
1 ATATATATACAC
69884630 A
1 A
69884631 CATTTTGACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (12 bp):
ATATATATACAC
Found at i:69892966 original size:20 final size:20
Alignment explanation
Indices: 69892928--69892966 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
69892918 TTGCACCTCC
*
69892928 TTTTCTTTTATTCTTTTTCT
1 TTTTCTTTTATTCTATTTCT
69892948 TTTTCTTTT-TTCTGATTTC
1 TTTTCTTTTATTCT-ATTTC
69892967 ATCGTTTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.05, C:0.15, G:0.03, T:0.77
Consensus pattern (20 bp):
TTTTCTTTTATTCTATTTCT
Found at i:69894069 original size:25 final size:23
Alignment explanation
Indices: 69894024--69894095 Score: 78
Period size: 25 Copynumber: 3.1 Consensus size: 23
69894014 AGAAAAGAAT
69894024 AAGAAAAGGAAATT-GGAAAGAAGA
1 AAGAAAA-GAAATTAGG-AAGAAGA
69894048 AGAGAAAATGAAATTAGGAAGAA-A
1 A-AGAAAA-GAAATTAGGAAGAAGA
*
69894072 AA-AAAAGAGATTAGGAAGAAGA
1 AAGAAAAGAAATTAGGAAGAAGA
69894094 AA
1 AA
69894096 TGTCATTTGG
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
21 13 0.30
22 7 0.16
23 1 0.02
24 3 0.07
25 17 0.40
26 2 0.05
ACGTcount: A:0.64, C:0.00, G:0.26, T:0.10
Consensus pattern (23 bp):
AAGAAAAGAAATTAGGAAGAAGA
Found at i:69896602 original size:18 final size:18
Alignment explanation
Indices: 69896579--69896614 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
69896569 CTCACATTTT
69896579 CAACCCTAACCCTAAACC
1 CAACCCTAACCCTAAACC
* *
69896597 CAACCCTATCCTTAAACC
1 CAACCCTAACCCTAAACC
69896615 AAATATCCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.36, C:0.47, G:0.00, T:0.17
Consensus pattern (18 bp):
CAACCCTAACCCTAAACC
Found at i:69898914 original size:16 final size:16
Alignment explanation
Indices: 69898889--69898932 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
69898879 ATAAGCACCA
*
69898889 GCACAAAGCCTGCTAG
1 GCACATAGCCTGCTAG
*
69898905 GCACATAGCCTGTTAG
1 GCACATAGCCTGCTAG
69898921 GCACATAGCCTG
1 GCACATAGCCTG
69898933 AATAATCATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.27, C:0.30, G:0.25, T:0.18
Consensus pattern (16 bp):
GCACATAGCCTGCTAG
Found at i:69898915 original size:39 final size:39
Alignment explanation
Indices: 69898806--69898916 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 39
69898796 ATTTTCAATA
* * *
69898806 CACCAGCATATAGTCTGCTAGGCACATAGCCCGAATAGT
1 CACCAGCATAAAGCCTGCTAGGCACATAGCCTGAATAGT
* * * *
69898845 CACCGGCATAAAGCTTGCTAAGTACATAGCCTGAATAAG-
1 CACCAGCATAAAGCCTGCTAGGCACATAGCCTGAAT-AGT
*
69898884 CACCAGCACAAAGCCTGCTAGGCACATAGCCTG
1 CACCAGCATAAAGCCTGCTAGGCACATAGCCTG
69898917 TTAGGCACAT
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
39 57 0.97
40 2 0.03
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.18
Consensus pattern (39 bp):
CACCAGCATAAAGCCTGCTAGGCACATAGCCTGAATAGT
Found at i:69898947 original size:39 final size:39
Alignment explanation
Indices: 69898904--69899020 Score: 171
Period size: 39 Copynumber: 3.0 Consensus size: 39
69898894 AAGCCTGCTA
* * * *
69898904 GGCACATAGCCTGTTAGGCACATAGCCTGAATAATCATC
1 GGCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACC
*
69898943 GGCACAAAGCCTACTAGGCACATAGCCCGAATAATCACC
1 GGCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACC
* *
69898982 GGCACAAAGCCTGCTAGGCACATAGCCCAAATAGTCACC
1 GGCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACC
69899021 ATATTTTTAT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 70 1.00
ACGTcount: A:0.33, C:0.31, G:0.20, T:0.16
Consensus pattern (39 bp):
GGCACAAAGCCTGCTAGGCACATAGCCCGAATAATCACC
Found at i:69898987 original size:94 final size:94
Alignment explanation
Indices: 69898815--69899008 Score: 271
Period size: 94 Copynumber: 2.1 Consensus size: 94
69898805 ACACCAGCAT
* * * * * * *
69898815 ATAGTCTGCTAGGCACATAGCCCGAATAGTCACCGGCATAAAGCTTGCTAAGTACATAGCCTGAA
1 ATAGCCTGCTAGGCACATAGCCCGAATAATCACCGGCACAAAGCCTACTAAGCACATAGCCCGAA
69898880 TAAGCACCAGCACAAAGCCTGCTAGGCAC
66 TAAGCACCAGCACAAAGCCTGCTAGGCAC
* * * *
69898909 ATAGCCTGTTAGGCACATAGCCTGAATAATCATCGGCACAAAGCCTACTAGGCACATAGCCCGAA
1 ATAGCCTGCTAGGCACATAGCCCGAATAATCACCGGCACAAAGCCTACTAAGCACATAGCCCGAA
* *
69898974 TAATCACCGGCACAAAGCCTGCTAGGCAC
66 TAAGCACCAGCACAAAGCCTGCTAGGCAC
69899003 ATAGCC
1 ATAGCC
69899009 CAAATAGTCA
Statistics
Matches: 87, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
94 87 1.00
ACGTcount: A:0.33, C:0.29, G:0.21, T:0.18
Consensus pattern (94 bp):
ATAGCCTGCTAGGCACATAGCCCGAATAATCACCGGCACAAAGCCTACTAAGCACATAGCCCGAA
TAAGCACCAGCACAAAGCCTGCTAGGCAC
Found at i:69904738 original size:12 final size:12
Alignment explanation
Indices: 69904721--69904746 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
69904711 GAGTATGTAC
69904721 CATTAATATTAT
1 CATTAATATTAT
69904733 CATTAATATTAT
1 CATTAATATTAT
69904745 CA
1 CA
69904747 AAATCTCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.46
Consensus pattern (12 bp):
CATTAATATTAT
Found at i:69912325 original size:22 final size:23
Alignment explanation
Indices: 69912282--69912334 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
69912272 AGACCATTGT
** *
69912282 TTTTTTTTCCTCCATTTTTTCCC
1 TTTTTTTTCCTCCATTAATTCCA
69912305 TTTTTTTTCC-CCATTAATTCCA
1 TTTTTTTTCCTCCATTAATTCCA
*
69912327 TTATTTTT
1 TTTTTTTT
69912335 ACTAGTGATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 16 0.62
23 10 0.38
ACGTcount: A:0.11, C:0.25, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTTTTTTCCTCCATTAATTCCA
Found at i:69915616 original size:41 final size:41
Alignment explanation
Indices: 69915571--69915652 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
69915561 TCAGCTACTG
69915571 TTATGAAATTTCATTTTGTTTGTTTTAGGTCAGATTTTATA
1 TTATGAAATTTCATTTTGTTTGTTTTAGGTCAGATTTTATA
*
69915612 TTATGAAATTTCATTTTGTTTGTTTTAGGTCGGATTTTATA
1 TTATGAAATTTCATTTTGTTTGTTTTAGGTCAGATTTTATA
69915653 CAAGGAAAGC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.23, C:0.05, G:0.16, T:0.56
Consensus pattern (41 bp):
TTATGAAATTTCATTTTGTTTGTTTTAGGTCAGATTTTATA
Found at i:69919210 original size:105 final size:105
Alignment explanation
Indices: 69919064--69919484 Score: 447
Period size: 104 Copynumber: 4.0 Consensus size: 105
69919054 ATATTTTTAT
* * * * * *
69919064 ATATAATATATTGATTGATGCACACTT-CAAGGAGGGAATGATTTTTGAAGTTCTAGATATTGTT
1 ATATAATATATTGGTAGATGCACA-TTGCAAGAAGGGAATGATTTCTGAAGCTCAAGATATTGTT
* * * *
69919128 AACACAATGGGAAATCAAGGCATCGAGCCTGATGTTGTCAC
65 GACACAATGAGAAAGCAAGGCATTGAGCCTGATGTTGTCAC
* * * *
69919169 ATATAGTATATTGGTAGATGCATATTGCAAGAAGGGAATGATTTCTAAAGCTGAAGATATTGTTG
1 ATATAATATATTGGTAGATGCACATTGCAAGAAGGGAATGATTTCTGAAGCTCAAGATATTGTTG
** * *
69919234 ACAGTATGAAAAAGCTAGGCATTGAGCCTGATGTTGTCAC
66 ACACAATGAGAAAGCAAGGCATTGAGCCTGATGTTGTCAC
* * * * * *
69919274 ATATAACATATTGGTTA-ATGCGCATTGCAAGGAGGGAATGGTTCCT-AAGCTGAAGATATTGTT
1 ATATAATATATTGG-TAGATGCACATTGCAAGAAGGGAATGATTTCTGAAGCTCAAGATATTGTT
* * * *
69919337 GACACGATGAGAAAGCAAGGTATTGAGCCTGACGTTGACAC
65 GACACAATGAGAAAGCAAGGCATTGAGCCTGATGTTGTCAC
* * * * * * *
69919378 -TCATAGTATATTGGTTGATGCACATTGAAAGAAGGGGATGGTTT-TGAAGCACCAGATATTGTT
1 AT-ATAATATATTGGTAGATGCACATTGCAAGAAGGGAATGATTTCTGAAGCTCAAGATATTGTT
* *
69919441 GACACAATGAGAAAGCAAGGCATTGAGCCTAAAGTTGTCAC
65 GACACAATGAGAAAGCAAGGCATTGAGCCTGATGTTGTCAC
69919482 ATA
1 ATA
69919485 CAACACTCTT
Statistics
Matches: 262, Mismatches: 48, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
103 3 0.01
104 136 0.52
105 121 0.46
106 2 0.01
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.29
Consensus pattern (105 bp):
ATATAATATATTGGTAGATGCACATTGCAAGAAGGGAATGATTTCTGAAGCTCAAGATATTGTTG
ACACAATGAGAAAGCAAGGCATTGAGCCTGATGTTGTCAC
Found at i:69927221 original size:48 final size:48
Alignment explanation
Indices: 69927103--69927327 Score: 274
Period size: 48 Copynumber: 4.7 Consensus size: 48
69927093 ATGTGTAACC
* * * * * *
69927103 GTGTAAGACCATATTTGGGATATGACATCGGCATTGTTATGTG-GCCA
1 GTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTACGTGAGCCA
* * * *
69927150 GTGTAAGACCATGTTTGGGACATGGCATTGACATTGTTACGTGAGCCA
1 GTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTACGTGAGCCA
*
69927198 ATGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTACGTGAGCCA
1 GTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTACGTGAGCCA
* * * * *
69927246 GTGTAATACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCTA
1 GTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTACGTGAGCCA
*
69927294 GTGTAAGACCATGTCTAGGAA-ATGACATCGGCAT
1 GTGTAAGACCATGTCT-GGAACATGGCATCGGCAT
69927328 GAGGCATCGT
Statistics
Matches: 156, Mismatches: 20, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
47 37 0.24
48 116 0.74
49 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTACGTGAGCCA
Found at i:69930938 original size:19 final size:20
Alignment explanation
Indices: 69930906--69930945 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
69930896 ATCTTTTCTG
69930906 AGTATTCTGAGTATATATTC
1 AGTATTCTGAGTATATATTC
69930926 AGTATTC-GAGTATATATTC
1 AGTATTCTGAGTATATATTC
69930945 A
1 A
69930946 TTCATCCTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (20 bp):
AGTATTCTGAGTATATATTC
Found at i:69931210 original size:44 final size:44
Alignment explanation
Indices: 69931147--69931235 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
69931137 ATTTTACTAG
69931147 ATGTTGTTCTATCTATATAAATAATTGGAATGTGTCTTAATACA
1 ATGTTGTTCTATCTATATAAATAATTGGAATGTGTCTTAATACA
*
69931191 ATGTTGTTCTGTCTATATAAATAATTGGAATGTGTCTTAATACA
1 ATGTTGTTCTATCTATATAAATAATTGGAATGTGTCTTAATACA
69931235 A
1 A
69931236 GAATGTAAAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.43
Consensus pattern (44 bp):
ATGTTGTTCTATCTATATAAATAATTGGAATGTGTCTTAATACA
Found at i:69931226 original size:23 final size:23
Alignment explanation
Indices: 69931158--69931227 Score: 67
Period size: 23 Copynumber: 3.1 Consensus size: 23
69931148 TGTTGTTCTA
69931158 TCTATATAAATAATTGGAATGTG
1 TCTATATAAATAATTGGAATGTG
* * *
69931181 TCT-TAATACAAT-GTT-G-TTCTG
1 TCTAT-ATA-AATAATTGGAATGTG
69931202 TCTATATAAATAATTGGAATGTG
1 TCTATATAAATAATTGGAATGTG
69931225 TCT
1 TCT
69931228 TAATACAAGA
Statistics
Matches: 35, Mismatches: 6, Indels: 12
0.66 0.11 0.23
Matches are distributed among these distances:
20 3 0.09
21 11 0.31
22 4 0.11
23 14 0.40
24 3 0.09
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.43
Consensus pattern (23 bp):
TCTATATAAATAATTGGAATGTG
Found at i:69933230 original size:48 final size:48
Alignment explanation
Indices: 69933165--69933434 Score: 369
Period size: 48 Copynumber: 5.6 Consensus size: 48
69933155 ATGTGTAACT
* * * * *
69933165 GTGTAAGACCATATCTGGGATATGGCATCAGCTTTGCTATGTGAGTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCATTGTTATGTGAGCCA
69933213 GTGTAAGACCATGTCTGGGACATGGCATCAGCATTGTTATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCATTGTTATGTGAGCCA
* * * * *
69933261 GTGTAACACCCATGTCTAGGACATGGTATCGGCATTGTTACGTGAGCCA
1 GTGTAAGA-CCATGTCTGGGACATGGCATCAGCATTGTTATGTGAGCCA
* * * *
69933310 GTGTAATACCATGTCTGGGACATGGCATCGGCATCGTTACGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCATTGTTATGTGAGCCA
* * *
69933358 GTGTAAGACCATATCTGGGACATGTCATCAGCATCGTTATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCATTGTTATGTGAGCCA
*
69933406 GAGTAAGACCATGTCTGGGACATGGCATC
1 GTGTAAGACCATGTCTGGGACATGGCATC
69933435 GGATGAGGCA
Statistics
Matches: 199, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
48 156 0.78
49 43 0.22
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCAGCATTGTTATGTGAGCCA
Found at i:69933321 original size:97 final size:96
Alignment explanation
Indices: 69933165--69933434 Score: 335
Period size: 97 Copynumber: 2.8 Consensus size: 96
69933155 ATGTGTAACT
* * * * * * * * *
69933165 GTGTAAGACCATATCTGGGATATGGCATCAGCTTTGCTATGTGAGTCAGTGTAAGACCATGTCTG
1 GTGTAACACCATATCTAGGACATGTCATCAGCATCGTTACGTGAGCCAGTGTAAGACCATGTCTG
* *
69933230 GGACATGGCATCAGCATTGTTATGTGAGCCA
66 GGACATGGCATCAGCATCGTTACGTGAGCCA
* * * *
69933261 GTGTAACACCCATGTCTAGGACATGGT-ATCGGCATTGTTACGTGAGCCAGTGTAATACCATGTC
1 GTGTAACA-CCATATCTAGGACAT-GTCATCAGCATCGTTACGTGAGCCAGTGTAAGACCATGTC
*
69933325 TGGGACATGGCATCGGCATCGTTACGTGAGCCA
64 TGGGACATGGCATCAGCATCGTTACGTGAGCCA
* * * *
69933358 GTGTAAGACCATATCTGGGACATGTCATCAGCATCGTTATGTGAGCCAGAGTAAGACCATGTCTG
1 GTGTAACACCATATCTAGGACATGTCATCAGCATCGTTACGTGAGCCAGTGTAAGACCATGTCTG
69933423 GGACATGGCATC
66 GGACATGGCATC
69933435 GGATGAGGCA
Statistics
Matches: 149, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
95 2 0.01
96 66 0.44
97 80 0.54
98 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (96 bp):
GTGTAACACCATATCTAGGACATGTCATCAGCATCGTTACGTGAGCCAGTGTAAGACCATGTCTG
GGACATGGCATCAGCATCGTTACGTGAGCCA
Found at i:69933367 original size:145 final size:144
Alignment explanation
Indices: 69933165--69933436 Score: 391
Period size: 145 Copynumber: 1.9 Consensus size: 144
69933155 ATGTGTAACT
* * * * * *
69933165 GTGTAAGACCATATCTGGGATATGGCATCAGCTTTGCTATGTGAGTCAGTGTAAGACCATGTCTG
1 GTGTAAGACCATATCTGGGACATGGCATCAGCATCGCTACGTGAGCCAGTGTAAGACCATATCTG
* * *
69933230 GGACATGGCATCAGCATTGTTATGTGAGCCAGTGTAACACCCATGTCTAGGACATGGTATCGGCA
66 GGACATGGCATCAGCATCGTTATGTGAGCCAGAGTAACA-CCATGTCTAGGACATGGCATCGGCA
69933295 TTGTTACGTGAGCCA
130 TTGTTACGTGAGCCA
* * * *
69933310 GTGTAATACCATGTCTGGGACATGGCATCGGCATCGTTACGTGAGCCAGTGTAAGACCATATCTG
1 GTGTAAGACCATATCTGGGACATGGCATCAGCATCGCTACGTGAGCCAGTGTAAGACCATATCTG
* * *
69933375 GGACATGTCATCAGCATCGTTATGTGAGCCAGAGTAAGACCATGTCTGGGACATGGCATCGG
66 GGACATGGCATCAGCATCGTTATGTGAGCCAGAGTAACACCATGTCTAGGACATGGCATCGG
69933437 ATGAGGCATC
Statistics
Matches: 111, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
144 21 0.19
145 90 0.81
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (144 bp):
GTGTAAGACCATATCTGGGACATGGCATCAGCATCGCTACGTGAGCCAGTGTAAGACCATATCTG
GGACATGGCATCAGCATCGTTATGTGAGCCAGAGTAACACCATGTCTAGGACATGGCATCGGCAT
TGTTACGTGAGCCA
Found at i:69937297 original size:131 final size:131
Alignment explanation
Indices: 69937063--69937364 Score: 374
Period size: 131 Copynumber: 2.3 Consensus size: 131
69937053 AATGATTGGA
* * * * * *
69937063 AAATCAGGTAACACAAATGAGATTGTTCATGATATTGAATAGAATGAACTTAGGTTGTGATATTA
1 AAATCAGCTAACTCAAATAAGATTGTTCATGATATTAAATAGAATGAACTTAGGTTGTCAAATTA
* * * ** **
69937128 AATTAATGAACTTTAATGATATCAGCTGCGATATTAAATCAGTGAGCTGTTTGGTGTAGCGATAT
66 AATTAATGAACCTTAACGATATCAACTGCGATATTAAATCAACGAGCTGTTTGAAGTAGCGATAT
69937193 T
131 T
* *
69937194 AAATCAGCTAACTCAAATAAGATTGTTCATGATATTAAATCGAATGAACTTAGGTTG-CAAATTT
1 AAATCAGCTAACTCAAATAAGATTGTTCATGATATTAAATAGAATGAACTTAGGTTGTCAAATTA
* * * *
69937258 AATTCA-GCAAACCTTACCGATATCAACTGCGATCTTAAATCAACGAGCTGTTTGAAGTAGTGAT
66 AATTAATG--AACCTTAACGATATCAACTGCGATATTAAATCAACGAGCTGTTTGAAGTAGCGAT
*
69937322 CTT
129 ATT
*
69937325 AAATCATCTAACTCAAATAAGATTGTTCATGATATATAAA
1 AAATCAGCTAACTCAAATAAGATTGTTCATGATAT-TAAA
69937365 GTAAAATATA
Statistics
Matches: 147, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
129 1 0.01
130 9 0.06
131 133 0.90
132 4 0.03
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.33
Consensus pattern (131 bp):
AAATCAGCTAACTCAAATAAGATTGTTCATGATATTAAATAGAATGAACTTAGGTTGTCAAATTA
AATTAATGAACCTTAACGATATCAACTGCGATATTAAATCAACGAGCTGTTTGAAGTAGCGATAT
T
Found at i:69940680 original size:31 final size:32
Alignment explanation
Indices: 69940645--69940707 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
69940635 ATCCGAATAT
69940645 TATGTTATAA-AATAATAATATAT-TAATTATA
1 TATGTTA-AATAATAATAATATATATAATTATA
* *
69940676 TATGTTAAATAATAATCATATATATATTTATA
1 TATGTTAAATAATAATAATATATATAATTATA
69940708 CTTATATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 2 0.07
31 19 0.68
32 7 0.25
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (32 bp):
TATGTTAAATAATAATAATATATATAATTATA
Found at i:69940870 original size:39 final size:40
Alignment explanation
Indices: 69940817--69940907 Score: 103
Period size: 39 Copynumber: 2.2 Consensus size: 40
69940807 AAAATTTATA
* * *
69940817 TTTAATACAATAAAATATATATTATATATAT-TTGTGTTT
1 TTTAATATAATAAAACATATATTATATATATGTAGTGTTT
* * *
69940856 TTTAATATAGTAAAACATTTATTATATTTATGGTAGTGTTT
1 TTTAATATAATAAAACATATATTATATATAT-GTAGTGTTT
69940897 TATTAATATAA
1 T-TTAATATAA
69940908 ATACTTTTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
39 26 0.62
41 8 0.19
42 8 0.19
ACGTcount: A:0.40, C:0.02, G:0.08, T:0.51
Consensus pattern (40 bp):
TTTAATATAATAAAACATATATTATATATATGTAGTGTTT
Found at i:69945177 original size:21 final size:21
Alignment explanation
Indices: 69945151--69945196 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
69945141 AGTAGAAACA
69945151 AAATAGGGCTTTGGAAGCTTG
1 AAATAGGGCTTTGGAAGCTTG
69945172 AAATAGGGCTTTGGAAGCTTG
1 AAATAGGGCTTTGGAAGCTTG
69945193 AAAT
1 AAAT
69945197 TTCAGCTACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (21 bp):
AAATAGGGCTTTGGAAGCTTG
Found at i:69956519 original size:37 final size:37
Alignment explanation
Indices: 69956469--69956547 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
69956459 TTATTACGAA
* * *
69956469 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
69956506 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
69956543 GTCTT
1 GTCTT
69956548 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:69956840 original size:49 final size:47
Alignment explanation
Indices: 69956666--69956939 Score: 397
Period size: 47 Copynumber: 5.7 Consensus size: 47
69956656 CCCTTCGGGA
* * * * * *
69956666 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69956713 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69956760 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69956807 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69956856 CTTATCACATATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69956905 CTTATCTCATATATACA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
69956940 AGAATCCTAA
Statistics
Matches: 210, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 115 0.55
49 94 0.45
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69956863 original size:96 final size:94
Alignment explanation
Indices: 69956666--69956939 Score: 397
Period size: 96 Copynumber: 2.9 Consensus size: 94
69956656 CCCTTCGGGA
* * * * * * * *
69956666 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
69956731 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
69956760 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
69956825 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
69956856 CTTATCACATATATATACACTTTCACATTCATCGCATCGGCCATTAGGCCTTATCTCATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
69956921 A-TGTTCACATCCATCACAT
64 ACT-TTCACATTCATCACAT
69956940 AGAATCCTAA
Statistics
Matches: 164, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
94 47 0.29
95 1 0.01
96 71 0.43
98 45 0.27
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:69962390 original size:105 final size:105
Alignment explanation
Indices: 69962219--69962424 Score: 290
Period size: 105 Copynumber: 2.0 Consensus size: 105
69962209 TCACGTATAA
* * *
69962219 TATATTGATAGATGCACATTGCAAGAAGAGGATGATTTCTGAAGCTGTAGATACTGTTGATGCAA
1 TATATTGATAGATGCACATTGCAAGAAGAGGATGATTTCTAAAGCTGAAGATACTGTTGATACAA
*
69962284 TGAGAAAGCAAGGCATTGAACCTAATGTTGTCACATTCAG
66 TGAGAAAGAAAGGCATTGAACCTAATGTTGTCACATTCAG
* * * *
69962324 TATATTGGTTGATGCACATTGC-A-AAGAGGGAATGGTTTCTAAAGCTGAAGATATTGTTGATAC
1 TATATTGATAGATGCACATTGCAAGAAGA-GG-ATGATTTCTAAAGCTGAAGATACTGTTGATAC
* *
69962387 AATGAGAAAGAAAGGCATTGAGCCTGATGTTGTCACAT
64 AATGAGAAAGAAAGGCATTGAACCTAATGTTGTCACAT
69962425 ATAATGCATT
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
103 4 0.04
104 3 0.03
105 82 0.92
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (105 bp):
TATATTGATAGATGCACATTGCAAGAAGAGGATGATTTCTAAAGCTGAAGATACTGTTGATACAA
TGAGAAAGAAAGGCATTGAACCTAATGTTGTCACATTCAG
Done.