Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 211 of 344
Found at i:69970225 original size:33 final size:33
Alignment explanation
Indices: 69970140--69970327 Score: 87
Period size: 33 Copynumber: 5.6 Consensus size: 33
69970130 TTCTTTGTGT
*
69970140 CATAGTCCAACTATGGTCTTACA-T-ATATGTTGC
1 CATAGCCCAACTATGGTCTTACATTAATA-G-TGC
* *** * * **
69970173 CATGGCCTTGCCATAGTCTTACATTTGTAGTGC
1 CATAGCCCAACTATGGTCTTACATTAATAGTGC
* *
69970206 CATAGCCCAATTATGGTCTTATCATCAGA-A-TGC
1 CATAGCCCAACTATGGTCTTA-CATTA-ATAGTGC
* * * *
69970239 CATAGCCCAGCTATGGCCTTACATATAAACACTGC
1 CATAGCCCAACTATGGTCTTACAT-T-AATAGTGC
* * * * * *
69970274 CATGGTCCAACCATGGTCTTACGTTTATAGTGT
1 CATAGCCCAACTATGGTCTTACATTAATAGTGC
* *
69970307 CATAACCCAATTATGGTCTTA
1 CATAGCCCAACTATGGTCTTA
69970328 TCTATCAATT
Statistics
Matches: 110, Mismatches: 37, Indels: 16
0.67 0.23 0.10
Matches are distributed among these distances:
32 3 0.03
33 75 0.68
34 9 0.08
35 23 0.21
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.32
Consensus pattern (33 bp):
CATAGCCCAACTATGGTCTTACATTAATAGTGC
Found at i:69971965 original size:41 final size:41
Alignment explanation
Indices: 69971908--69971985 Score: 106
Period size: 41 Copynumber: 1.9 Consensus size: 41
69971898 ATAGTGATAT
*
69971908 TCGGGCTTTGAGCCTAGCAAGCTT-TATGCTGGTGAATGTAA
1 TCGGGCTTTGAGCCTAGCAAGCTTAT-TGCCGGTGAATGTAA
*
69971949 TCGGGCTTT-ATGCCTAGCAGGCTTATTGCCGGTGAAT
1 TCGGGCTTTGA-GCCTAGCAAGCTTATTGCCGGTGAAT
69971986 AGTATCAGAC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 1 0.03
41 31 0.94
42 1 0.03
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.32
Consensus pattern (41 bp):
TCGGGCTTTGAGCCTAGCAAGCTTATTGCCGGTGAATGTAA
Found at i:69972320 original size:101 final size:100
Alignment explanation
Indices: 69972166--69972348 Score: 251
Period size: 101 Copynumber: 1.8 Consensus size: 100
69972156 CATAGGTATG
* *
69972166 TACATATGTGATGTTATATTGGATTTTGAATATTCGGCCATGAAGGTATGCACAAATGTGATATT
1 TACATATGTGATGTTAAATTGGATTTTGAATATTCGGCCATGAAGGTATGCACAAATGTAATATT
*
69972231 ATATTTGAATTTGTATATTCCGCCATATAAGTAAT
66 ATATTTGAATTTCTATATTCCGCCATATAAGTAAT
* * * * * *
69972266 TACATATTTGATGTTAAATTTGATCTTTGCATATTCTGCCAT-ATAGGTATGCACATATGTAATC
1 TACATATGTGATGTTAAATTGGAT-TTTGAATATTCGGCCATGA-AGGTATGCACAAATGTAATA
*
69972330 TTATATTTGATTTTCTATA
64 TTATATTTGAATTTCTATA
69972349 ATCGACCAAA
Statistics
Matches: 71, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
100 22 0.31
101 49 0.69
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.43
Consensus pattern (100 bp):
TACATATGTGATGTTAAATTGGATTTTGAATATTCGGCCATGAAGGTATGCACAAATGTAATATT
ATATTTGAATTTCTATATTCCGCCATATAAGTAAT
Found at i:69972322 original size:51 final size:50
Alignment explanation
Indices: 69972157--69972343 Score: 198
Period size: 50 Copynumber: 3.7 Consensus size: 50
69972147 ATTCGACCAC
* * *
69972157 ATAGGTATGTACATATGTGATGTTATATTGGATTTTGAATATTCGGCCAT
1 ATAGGTATGCACATATGTGATGTTATATTTGATTTTGAATATTCCGCCAT
* * * *
69972207 GA-AGGTATGCACAAATGTGATATTATATTTGAATTTGTATATTCCGCCAT
1 -ATAGGTATGCACATATGTGATGTTATATTTGATTTTGAATATTCCGCCAT
* * * * * *
69972257 ATAAGTAAT-TACATATTTGATGTTAAATTTGATCTTTGCATATTCTGCCAT
1 ATAGGT-ATGCACATATGTGATGTTATATTTGAT-TTTGAATATTCCGCCAT
* *
69972308 ATAGGTATGCACATATGTAATCTTATATTTGATTTT
1 ATAGGTATGCACATATGTGATGTTATATTTGATTTT
69972344 CTATAATCGA
Statistics
Matches: 110, Mismatches: 22, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
49 1 0.01
50 67 0.61
51 42 0.38
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.43
Consensus pattern (50 bp):
ATAGGTATGCACATATGTGATGTTATATTTGATTTTGAATATTCCGCCAT
Found at i:69975064 original size:13 final size:11
Alignment explanation
Indices: 69975028--69975058 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
69975018 CCACCCGTAT
69975028 TAATTTTTATA
1 TAATTTTTATA
*
69975039 TTATTTTTATA
1 TAATTTTTATA
69975050 TAATTTTTA
1 TAATTTTTA
69975059 AATATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TAATTTTTATA
Found at i:69975214 original size:30 final size:30
Alignment explanation
Indices: 69975180--69975242 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
69975170 ACTTAACAAG
* *
69975180 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAAAAAAATTAA
*
69975210 CAAATACCTTTAAAATAATAAAAAAATTAA
1 CAAATACCTCTAAAATAATAAAAAAATTAA
69975240 CAA
1 CAA
69975243 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.60, C:0.14, G:0.02, T:0.24
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAAAAAAATTAA
Found at i:69981189 original size:31 final size:31
Alignment explanation
Indices: 69981122--69981182 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
69981112 TAATGCCTTG
* * *
69981122 ATTATTAATACCATTATTATTTAGTTTAATT
1 ATTATTAATACAATTATTAATTAGATTAATT
*
69981153 ATTATTATTACAATTATTAATTA-ATTAATT
1 ATTATTAATACAATTATTAATTAGATTAATT
69981183 TTTTATTCTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 6 0.23
31 20 0.77
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (31 bp):
ATTATTAATACAATTATTAATTAGATTAATT
Found at i:69982081 original size:18 final size:18
Alignment explanation
Indices: 69982058--69982093 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
69982048 CTATATTAAG
69982058 AAAACAAAAAATTTGAGA
1 AAAACAAAAAATTTGAGA
69982076 AAAACAAAAAATTTGAGA
1 AAAACAAAAAATTTGAGA
69982094 TTATTCTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.67, C:0.06, G:0.11, T:0.17
Consensus pattern (18 bp):
AAAACAAAAAATTTGAGA
Found at i:69983885 original size:33 final size:32
Alignment explanation
Indices: 69983842--69983909 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 32
69983832 ATAAGGTTAG
* *
69983842 GTATATTTTGTGTATACCA-TATGGAAAGGAAAT
1 GTATACTTTGTGTATACCACT-TGAAAAGG-AAT
*
69983875 GTATACTTTGTGTGTACCACTTGAAAAGGAAT
1 GTATACTTTGTGTATACCACTTGAAAAGGAAT
69983907 GTA
1 GTA
69983910 CACCTCAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 6 0.19
33 24 0.77
34 1 0.03
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.35
Consensus pattern (32 bp):
GTATACTTTGTGTATACCACTTGAAAAGGAAT
Found at i:69985000 original size:15 final size:15
Alignment explanation
Indices: 69984980--69985010 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
69984970 AAAAGGAAAG
69984980 AATTTCTAGAATTAA
1 AATTTCTAGAATTAA
69984995 AATTTCTAGAATTAA
1 AATTTCTAGAATTAA
69985010 A
1 A
69985011 GTAGGGGAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (15 bp):
AATTTCTAGAATTAA
Found at i:69990522 original size:33 final size:33
Alignment explanation
Indices: 69990433--69990524 Score: 98
Period size: 33 Copynumber: 2.8 Consensus size: 33
69990423 GGTTATGTAC
* **
69990433 ACTTTGTGTGTA-CACTTGGTAAGGTTAGGTAT
1 ACTTTGTGTGTACCACTTGGAAAGGAAAGGTAT
* *
69990465 ATTTTGTGTATACCA-TATGGAAAGGAAAGGTAT
1 ACTTTGTGTGTACCACT-TGGAAAGGAAAGGTAT
* *
69990498 ACTTTGTGCGTACCACTTGAAAAGGAA
1 ACTTTGTGTGTACCACTTGGAAAGGAA
69990525 TGTACACCTC
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
32 11 0.23
33 36 0.75
34 1 0.02
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (33 bp):
ACTTTGTGTGTACCACTTGGAAAGGAAAGGTAT
Found at i:69996907 original size:22 final size:22
Alignment explanation
Indices: 69996882--69996924 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
69996872 TAGTCATATA
69996882 ATAAATTATTAATATAATAAAC
1 ATAAATTATTAATATAATAAAC
* * *
69996904 ATAATTTATTATTTTAATAAA
1 ATAAATTATTAATATAATAAA
69996925 TATTTAATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAC
Found at i:69996960 original size:13 final size:14
Alignment explanation
Indices: 69996944--69996985 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
69996934 TTTCAATTTT
69996944 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
69996957 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
69996972 ATTTTAAATAATAT
1 ATTTT-AATAATAT
69996986 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:69996970 original size:16 final size:16
Alignment explanation
Indices: 69996948--69996984 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
69996938 AATTTTATTT
69996948 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
69996965 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
69996980 TAATA
1 TAATA
69996985 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:69997037 original size:15 final size:15
Alignment explanation
Indices: 69997017--69997073 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
69997007 ATTCAATATT
69997017 AATATTTTAATAATA
1 AATATTTTAATAATA
**
69997032 AATATTTATTACAATTTTA
1 AATA-TT-TT--AATAATA
*
69997051 AATATATTAATAATA
1 AATATTTTAATAATA
69997066 AATATTTT
1 AATATTTT
69997074 GTAGTATAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
15 16 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 9 0.28
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:70001897 original size:31 final size:31
Alignment explanation
Indices: 70001820--70001902 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 31
70001810 CAAGAATTGA
* *
70001820 ATTAAATCAAAATTTCATGTATACAGTTGCAC
1 ATTAAATC-AAAGTTCATGTATACAATTGCAC
* *
70001852 A--AAATCAAAGTTCATGTATACAATTGTAT
1 ATTAAATCAAAGTTCATGTATACAATTGCAC
70001881 ATTAAATCATAA-TTCATGTATA
1 ATTAAATCA-AAGTTCATGTATA
70001903 ATTTTGAGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
29 20 0.45
30 5 0.11
31 16 0.36
32 3 0.07
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.36
Consensus pattern (31 bp):
ATTAAATCAAAGTTCATGTATACAATTGCAC
Found at i:70005677 original size:25 final size:26
Alignment explanation
Indices: 70005640--70005693 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
70005630 ATACCCCTTT
70005640 TCACCTATTCATTCAACACAACTCTC
1 TCACCTATTCATTCAACACAACTCTC
* **
70005666 TCACCT-TTCATTCCACACTTCTCTC
1 TCACCTATTCATTCAACACAACTCTC
70005691 TCA
1 TCA
70005694 TTTTCTCTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.24, C:0.41, G:0.00, T:0.35
Consensus pattern (26 bp):
TCACCTATTCATTCAACACAACTCTC
Found at i:70010268 original size:24 final size:24
Alignment explanation
Indices: 70010221--70010311 Score: 107
Period size: 24 Copynumber: 3.8 Consensus size: 24
70010211 CTATATAATG
*
70010221 GGAAGCTCA-TAAGAGCCATAATCA
1 GGAAGCTCACAAAGAGCCAT-ATCA
* *
70010245 GGAAGTTCACAAAGAACCATATCA
1 GGAAGCTCACAAAGAGCCATATCA
*
70010269 GGAAGCTCACGAAGAGCC-TATC-
1 GGAAGCTCACAAAGAGCCATATCA
70010291 GAGAAGCTCACAAAGAGCCAT
1 G-GAAGCTCACAAAGAGCCAT
70010312 GTAACAGGAA
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
22 1 0.02
23 20 0.35
24 28 0.49
25 8 0.14
ACGTcount: A:0.41, C:0.23, G:0.22, T:0.14
Consensus pattern (24 bp):
GGAAGCTCACAAAGAGCCATATCA
Found at i:70010306 original size:47 final size:48
Alignment explanation
Indices: 70010221--70010311 Score: 116
Period size: 47 Copynumber: 1.9 Consensus size: 48
70010211 CTATATAATG
* *
70010221 GGAAGCTCATAAGAGCCATAATCAGGAAGTTCACAAAGAACCATATCA
1 GGAAGCTCAGAAGAGCCATAATCAGGAAGCTCACAAAGAACCATATCA
*
70010269 GGAAGCTCACGAAGAGCC-T-ATC-GAGAAGCTCACAAAGAGCCAT
1 GGAAGCTCA-GAAGAGCCATAATCAG-GAAGCTCACAAAGAACCAT
70010312 GTAACAGGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
46 1 0.03
47 20 0.53
48 10 0.26
49 7 0.18
ACGTcount: A:0.41, C:0.23, G:0.22, T:0.14
Consensus pattern (48 bp):
GGAAGCTCAGAAGAGCCATAATCAGGAAGCTCACAAAGAACCATATCA
Found at i:70010320 original size:49 final size:48
Alignment explanation
Indices: 70010221--70010324 Score: 115
Period size: 47 Copynumber: 2.1 Consensus size: 48
70010211 CTATATAATG
* * *
70010221 GGAAGCTCATAAGAGCCATAATCAGGAAGTTCACAAAGAACCATATCA
1 GGAAGCTCAGAAGAGCCATAATCAGGAAGCTCACAAAGAACCATAACA
*
70010269 GGAAGCTCACGAAGAGCC-T-ATC-GAGAAGCTCACAAAGAGCCATGTAACA
1 GGAAGCTCA-GAAGAGCCATAATCAG-GAAGCTCACAAAGAACCA--TAACA
70010318 GGAAGCT
1 GGAAGCT
70010325 TCGGATAGCA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.40
48 10 0.21
49 18 0.38
ACGTcount: A:0.40, C:0.22, G:0.23, T:0.14
Consensus pattern (48 bp):
GGAAGCTCAGAAGAGCCATAATCAGGAAGCTCACAAAGAACCATAACA
Found at i:70013088 original size:24 final size:24
Alignment explanation
Indices: 70013061--70013107 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
70013051 CGACATAGAT
70013061 AACTTCAAAGCT-TTCCAAAGAGAC
1 AACTTCAAAG-TGTTCCAAAGAGAC
70013085 AACTTCAAAGTGTTCCAAAGAGA
1 AACTTCAAAGTGTTCCAAAGAGA
70013108 TCTTCACTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 1 0.05
24 21 0.95
ACGTcount: A:0.43, C:0.21, G:0.15, T:0.21
Consensus pattern (24 bp):
AACTTCAAAGTGTTCCAAAGAGAC
Found at i:70015635 original size:21 final size:22
Alignment explanation
Indices: 70015582--70015635 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
70015572 GGGGGTCCAA
*
70015582 ACGCCCGTGTGAAAGGTAGCAC
1 ACGCCCGTGTGAAAGGAAGCAC
* * *
70015604 ACGACCATGTGACA-GAAGCAC
1 ACGCCCGTGTGAAAGGAAGCAC
70015625 ACGCCCGTGTG
1 ACGCCCGTGTG
70015636 GTGCAGGTAC
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.28, C:0.30, G:0.30, T:0.13
Consensus pattern (22 bp):
ACGCCCGTGTGAAAGGAAGCAC
Found at i:70022207 original size:37 final size:37
Alignment explanation
Indices: 70022101--70022209 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
70022091 AGCTCGGATG
* * *
70022101 AAATCTCCACACGAAGTTATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
70022138 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
70022175 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
70022210 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:70022476 original size:98 final size:96
Alignment explanation
Indices: 70022355--70022551 Score: 290
Period size: 98 Copynumber: 2.0 Consensus size: 96
70022345 GCACATCGCC
* *
70022355 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCAATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
70022420 -GACCATTCAGCTTTACCAC-ATATGCATATCTCA
64 AG-CCATTCAGCTTTACCACAATATGCATAT-TCA
*
70022453 TACATATTTCACATTAGCAATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACACTAGCAATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
**
70022518 CCATTTGGCTTTACCACATATATGCATATTCA
66 CCATTCAGCTTTACCACA-ATATGCATATTCA
70022550 TA
1 TA
70022552 TTCACCACAT
Statistics
Matches: 91, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
96 30 0.33
97 6 0.07
98 55 0.60
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (96 bp):
TACATATTTCACACTAGCAATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCAGCTTTACCACAATATGCATATTCA
Found at i:70022481 original size:48 final size:48
Alignment explanation
Indices: 70022355--70022539 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
70022345 GCACATCGCC
*
70022355 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
70022405 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
70022453 TACATATTTCACATTAGCAATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
70022501 TACATATTTCACATTAGCCATTTGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
70022540 TGCATATTCA
Statistics
Matches: 123, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
48 80 0.65
49 2 0.02
50 41 0.33
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:70022639 original size:47 final size:47
Alignment explanation
Indices: 70022509--70022639 Score: 181
Period size: 47 Copynumber: 2.8 Consensus size: 47
70022499 CATACATATT
* * * * ** *
70022509 TCACATTAGCCATTTGGCTTTACCACATATATGCATATTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* *
70022556 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
70022603 TCACATTGGCCATTCGGCCTTATCACATATATGCATG
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATG
70022640 TTCGGCCATT
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
Found at i:70022647 original size:80 final size:80
Alignment explanation
Indices: 70022563--70022714 Score: 268
Period size: 80 Copynumber: 1.9 Consensus size: 80
70022553 TCACCACATT
*
70022563 GGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCA
1 GGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGACCTTATCA
70022628 CATATATGCATGTTC
66 CATATATGCATGTTC
* * *
70022643 GGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGACCTTATCT
1 GGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGACCTTATCA
70022708 CATATAT
66 CATATAT
70022715 ACACATTCAC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 68 1.00
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (80 bp):
GGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGACCTTATCA
CATATATGCATGTTC
Found at i:70022648 original size:33 final size:33
Alignment explanation
Indices: 70022610--70022675 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
70022600 TCATCACATT
70022610 GGCCATTCGGCCTTATCACATATATGCATGTTC
1 GGCCATTCGGCCTTATCACATATATGCATGTTC
70022643 GGCCATTCGGCCTTATCACATATATGCATGTTC
1 GGCCATTCGGCCTTATCACATATATGCATGTTC
70022676 ACATTCATCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.33
Consensus pattern (33 bp):
GGCCATTCGGCCTTATCACATATATGCATGTTC
Found at i:70022704 original size:47 final size:47
Alignment explanation
Indices: 70022643--70022735 Score: 141
Period size: 47 Copynumber: 2.0 Consensus size: 47
70022633 ATGCATGTTC
* * **
70022643 GGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATT
1 GGCCATTCGACCTTATCACATATATACACATTCACATTCATCACATT
*
70022690 GGCCATTCGACCTTATCTCATATATACACATTCACATTCATCACAT
1 GGCCATTCGACCTTATCACATATATACACATTCACATTCATCACAT
70022736 AAAATCCTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
GGCCATTCGACCTTATCACATATATACACATTCACATTCATCACATT
Found at i:70022736 original size:25 final size:25
Alignment explanation
Indices: 70022657--70022736 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
70022647 ATTCGGCCTT
**
70022657 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* *
70022682 ATCACAT-T-GGC-CATTCGACCTT-
1 ATCACATATATGCACATTC-ACATTC
* *
70022704 ATCTCATATATACACATTCACATTC
1 ATCACATATATGCACATTCACATTC
70022729 ATCACATA
1 ATCACATA
70022737 AAATCCTAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 9 0.22
23 7 0.17
24 6 0.15
25 19 0.46
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:70031465 original size:39 final size:39
Alignment explanation
Indices: 70031409--70031679 Score: 431
Period size: 39 Copynumber: 7.0 Consensus size: 39
70031399 AATTATATTA
* * **
70031409 CCAGCACAAAGCTTGCGGGACTTTAGCTTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
70031448 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
70031487 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
70031526 CCAGCACGAAGCCTGCGGGACTTTAGCCCGAATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
70031565 CCAGAACGAAG-C--CAGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
70031601 CCAGCACGAAGCCTGCAGGACTTTAGGCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
70031640 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
70031679 C
1 C
70031680 TAATGTCTTG
Statistics
Matches: 215, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
36 32 0.15
37 1 0.00
38 1 0.00
39 181 0.84
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:70041672 original size:27 final size:26
Alignment explanation
Indices: 70041642--70041694 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 26
70041632 GAAAAAAGTC
70041642 TTTCTTAAAGAACCTCTTAAGCATTTT
1 TTTCTTAAAGAACCTCTTAAGC-TTTT
70041669 TTTCTTAAAGAACCTCTTAAGCTTTT
1 TTTCTTAAAGAACCTCTTAAGCTTTT
70041695 CTTCAATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 4 0.15
27 22 0.85
ACGTcount: A:0.28, C:0.19, G:0.08, T:0.45
Consensus pattern (26 bp):
TTTCTTAAAGAACCTCTTAAGCTTTT
Found at i:70041704 original size:27 final size:27
Alignment explanation
Indices: 70041647--70041704 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
70041637 AAGTCTTTCT
* *
70041647 TAAAGAACCTCTTAAGCATTTTTTTCT
1 TAAAGAACCTCTTAAGCATTTTCTTCA
70041674 TAAAGAACCTCTTAAGC-TTTTCTTCAA
1 TAAAGAACCTCTTAAGCATTTTCTTC-A
70041701 TAAA
1 TAAA
70041705 ACTCTCATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.34, C:0.19, G:0.07, T:0.40
Consensus pattern (27 bp):
TAAAGAACCTCTTAAGCATTTTCTTCA
Found at i:70044025 original size:19 final size:19
Alignment explanation
Indices: 70043998--70044035 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
70043988 ACTAATCTCG
*
70043998 ATACGTATTTCTATACTCA
1 ATACATATTTCTATACTCA
70044017 ATACATATTTCTATACTCA
1 ATACATATTTCTATACTCA
70044036 GTAGTGCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.21, G:0.03, T:0.42
Consensus pattern (19 bp):
ATACATATTTCTATACTCA
Found at i:70051237 original size:16 final size:15
Alignment explanation
Indices: 70051213--70051242 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
70051203 AACTGTTTTA
70051213 TTACAAATTTCACTC
1 TTACAAATTTCACTC
70051228 TTACATAATTTCACT
1 TTACA-AATTTCACT
70051243 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:70051570 original size:50 final size:50
Alignment explanation
Indices: 70051452--70051729 Score: 285
Period size: 50 Copynumber: 5.6 Consensus size: 50
70051442 ATCTAGTACG
* * ** * *
70051452 CATAGTAGCTTGCACTTAGTACTACACATGCAACC-AACAATCCGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACA
70051501 C--AGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACA
* * ** * * * *
70051549 CGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAACTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACCATCTGATACA
* * * * *
70051600 CATAATAGCCTGCACTTAGTACTACATATGCT-ACCTAACCATCTGGTATA
1 CATAGTAGCCTGCACTTAGTACTACACACG-TGACCTAACCATCTGATACA
* * *
70051650 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATTTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATCTGATACA
*
70051702 CATAGTAGCCTGCACATAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
70051730 TGTGTTCTCA
Statistics
Matches: 188, Mismatches: 33, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
47 28 0.15
48 13 0.07
49 2 0.01
50 71 0.38
51 37 0.20
52 37 0.20
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.24
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACA
Found at i:70060278 original size:15 final size:15
Alignment explanation
Indices: 70060235--70060278 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 15
70060225 TGGTGAAAGG
* *
70060235 AAAATTCAATATCAA
1 AAAAATCAATATTAA
*
70060250 AAAAAT-AATTTTAA
1 AAAAATCAATATTAA
70060264 AAAAATCAATATTAA
1 AAAAATCAATATTAA
70060279 GTTTACTTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAAATCAATATTAA
Found at i:70063061 original size:80 final size:80
Alignment explanation
Indices: 70062971--70063132 Score: 306
Period size: 80 Copynumber: 2.0 Consensus size: 80
70062961 CTAATACATT
*
70062971 CACTTACCCCAAGTCCTCACTCACAAATCACAATAACTCTCCAATAAAGTGCCTAAAATAAAAGT
1 CACTTACCCCAAATCCTCACTCACAAATCACAATAACTCTCCAATAAAGTGCCTAAAATAAAAGT
70063036 GCAAAAATATTCACA
66 GCAAAAATATTCACA
*
70063051 CACTTACCCCAAATCCTCACTCACAAATCACAATAACTCTCCAATAAAGTGCCTAATATAAAAGT
1 CACTTACCCCAAATCCTCACTCACAAATCACAATAACTCTCCAATAAAGTGCCTAAAATAAAAGT
70063116 GCAAAAATATTCACA
66 GCAAAAATATTCACA
70063131 CA
1 CA
70063133 TTTAAGCGTG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.44, C:0.29, G:0.06, T:0.22
Consensus pattern (80 bp):
CACTTACCCCAAATCCTCACTCACAAATCACAATAACTCTCCAATAAAGTGCCTAAAATAAAAGT
GCAAAAATATTCACA
Found at i:70064144 original size:108 final size:109
Alignment explanation
Indices: 70063946--70064161 Score: 346
Period size: 109 Copynumber: 2.0 Consensus size: 109
70063936 AACTCATGCA
*
70063946 TTGAAATTTTAAAAGGTTATTCGATTATTTGGGTCAAACGAAACAAATCGAAACCCAACACGTAG
1 TTGAAATTTTAAAAGGTTATTCGATTATTTGGGTCAAACGAAACAAATCGAAACCCAACACGTAA
* *
70064011 GGCACAATCTTTCGAATCTCCAAAAAAGGGAATATTGCCTTTAT
66 GGCACAATCTTTCGAATCTCCAAAAAACGAAATATTGCCTTTAT
* * *
70064055 TTGAAATTTTAAAAGGTTGTTCGGTTATTTGGGTCAAACGAAA-AAATCGAAACCCAGCACGTAA
1 TTGAAATTTTAAAAGGTTATTCGATTATTTGGGTCAAACGAAACAAATCGAAACCCAACACGTAA
* *
70064119 GGCACGATCTTTTGAATC-CCAAAAAACGAAATATTGCCTTTAT
66 GGCACAATCTTTCGAATCTCCAAAAAACGAAATATTGCCTTTAT
70064162 GTTTAAAAAT
Statistics
Matches: 99, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
107 23 0.23
108 35 0.35
109 41 0.41
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (109 bp):
TTGAAATTTTAAAAGGTTATTCGATTATTTGGGTCAAACGAAACAAATCGAAACCCAACACGTAA
GGCACAATCTTTCGAATCTCCAAAAAACGAAATATTGCCTTTAT
Found at i:70064933 original size:14 final size:14
Alignment explanation
Indices: 70064922--70064951 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70064912 AGTTTAATGG
*
70064922 TATAATCATAATAA
1 TATAATAATAATAA
70064936 TATAATAATAATAA
1 TATAATAATAATAA
70064950 TA
1 TA
70064952 ATAAATGATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (14 bp):
TATAATAATAATAA
Found at i:70064937 original size:3 final size:3
Alignment explanation
Indices: 70064923--70064955 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
70064913 GTTTAATGGT
*
70064923 ATA ATC ATA ATA AT- ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
70064956 ATGATCCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:70064943 original size:17 final size:17
Alignment explanation
Indices: 70064923--70064975 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
70064913 GTTTAATGGT
70064923 ATAATCATAATAATATA
1 ATAATCATAATAATATA
*
70064940 ATAATAATAATAATA-A
1 ATAATCATAATAATATA
* *
70064956 ATGATCCAAAATAA-ATA
1 ATAAT-CATAATAATATA
70064973 ATA
1 ATA
70064976 TATAAAAGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
16 6 0.21
17 23 0.79
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30
Consensus pattern (17 bp):
ATAATCATAATAATATA
Found at i:70066337 original size:22 final size:21
Alignment explanation
Indices: 70066312--70066359 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 21
70066302 TGTTCAATCA
70066312 CTGTTCTATATTGTTTCTGCCT
1 CTGTTCTATATTGTTT-TGCCT
* *
70066334 CTGTTCTGTATTGTTTTGCTT
1 CTGTTCTATATTGTTTTGCCT
70066355 CTGTT
1 CTGTT
70066360 TCGCCTCTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.06, C:0.19, G:0.17, T:0.58
Consensus pattern (21 bp):
CTGTTCTATATTGTTTTGCCT
Found at i:70087702 original size:13 final size:13
Alignment explanation
Indices: 70087677--70087715 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
70087667 AATAAATATA
70087677 TTATTTTTAAATTT
1 TTATTTTT-AATTT
70087691 TTATTTTTAATTT
1 TTATTTTTAATTT
* *
70087704 ATCTTTTTAATT
1 TTATTTTTAATT
70087716 AATAACTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.65
14 8 0.35
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (13 bp):
TTATTTTTAATTT
Found at i:70088209 original size:25 final size:24
Alignment explanation
Indices: 70088149--70088214 Score: 62
Period size: 25 Copynumber: 2.7 Consensus size: 24
70088139 AATTTTATCA
*
70088149 AAAATATTT-TTTATTATATAATT
1 AAAATATTTATTTATTATATAAAT
* * *
70088172 ATCAATAATTATTTGATTTTATAAAT
1 A-AAATATTTATTT-ATTATATAAAT
*
70088198 AAAATATTTATTAATTA
1 AAAATATTTATTTATTA
70088215 AAAATATGAA
Statistics
Matches: 32, Mismatches: 8, Indels: 5
0.71 0.18 0.11
Matches are distributed among these distances:
23 1 0.03
24 9 0.28
25 12 0.38
26 10 0.31
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (24 bp):
AAAATATTTATTTATTATATAAAT
Found at i:70089551 original size:64 final size:64
Alignment explanation
Indices: 70089473--70089599 Score: 182
Period size: 64 Copynumber: 2.0 Consensus size: 64
70089463 TGTTTAGTCT
* *
70089473 GGTTCATCTGATGACAAAGATTTGTATATTTCTATAGATGAAACCAAGTTTTGTTTGAATGTCC
1 GGTTCATCTAATGACAAAGATTTGTATATTTCAATAGATGAAACCAAGTTTTGTTTGAATGTCC
* * * * * *
70089537 GGTTCATCTAATGACAAAGATTTTTATGTTTCAATTGATTAAACTAAGTTTTGTTTGATTGTC
1 GGTTCATCTAATGACAAAGATTTGTATATTTCAATAGATGAAACCAAGTTTTGTTTGAATGTC
70089600 TGGATTGTAG
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.43
Consensus pattern (64 bp):
GGTTCATCTAATGACAAAGATTTGTATATTTCAATAGATGAAACCAAGTTTTGTTTGAATGTCC
Found at i:70090671 original size:153 final size:150
Alignment explanation
Indices: 70090391--70090672 Score: 381
Period size: 153 Copynumber: 1.9 Consensus size: 150
70090381 TCTGAGTAAA
* *
70090391 ATAGCTTGTGTGTGCTTGCAGCTGCTAGCTTTCAGTTGACTGGATAGGCAATTCTAATCCTGTAA
1 ATAGCTTGTGTGTACATGCAGCTGCTAGCTTTCAGTTGACTGGATAGGCAATTCTAATCCTGTAA
*
70090456 AAAAAGAGCCAAATCTTGTGTTTGCAAAAGGTGCACAAGGGGAGCAATTAGGGGATTGGGAGGGG
66 AAAAAGAGCAAAATCTTGTGTTTGCAAAAGGTGCACAAGGGGAGCAATTAGGGGATTGGGAGGGG
70090521 CCCCATGTCCCCTAAACATG
131 CCCCATGTCCCCTAAACATG
* * * * * *
70090541 ATAGCTTGTGTGTACATGCAGTTGCTAGGTTTTAGTTGATTGGGATAGGCGATTCTAATCCCTCT
1 ATAGCTTGTGTGTACATGCAGCTGCTAGCTTTCAGTTGACT-GGATAGGCAATTCTAAT-CCT-G
* * *
70090606 TAAAAGAAA-AGGAAAAT-TTGGTGTTTGCAAAAGGTGCAGAAGGGGAGCAATT-GGGTGATTTG
63 TAAAA-AAAGAGCAAAATCTT-GTGTTTGCAAAAGGTGCACAAGGGGAGCAATTAGGG-GATTGG
70090668 GAGGG
125 GAGGG
70090673 CTTATATTTC
Statistics
Matches: 114, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
150 35 0.31
151 16 0.14
152 8 0.07
153 52 0.46
154 3 0.03
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (150 bp):
ATAGCTTGTGTGTACATGCAGCTGCTAGCTTTCAGTTGACTGGATAGGCAATTCTAATCCTGTAA
AAAAAGAGCAAAATCTTGTGTTTGCAAAAGGTGCACAAGGGGAGCAATTAGGGGATTGGGAGGGG
CCCCATGTCCCCTAAACATG
Found at i:70094115 original size:16 final size:16
Alignment explanation
Indices: 70094094--70094128 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
70094084 CCCCCTTTTT
70094094 TTTTATCTTATTTCAA
1 TTTTATCTTATTTCAA
* *
70094110 TTTTATTTTATTTTAA
1 TTTTATCTTATTTCAA
70094126 TTT
1 TTT
70094129 ATAAATAGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTATCTTATTTCAA
Found at i:70094441 original size:15 final size:16
Alignment explanation
Indices: 70094417--70094461 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
70094407 TACGAATAAT
*
70094417 AATTTGAATATTA-TA
1 AATTTAAATATTATTA
70094432 AATTTAAATATTATTTA
1 AATTTAAATATTA-TTA
70094449 AATTTATAATATT
1 AATTTA-AATATT
70094462 CAAATTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 12 0.46
17 8 0.31
18 6 0.23
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
AATTTAAATATTATTA
Found at i:70094459 original size:18 final size:18
Alignment explanation
Indices: 70094425--70094461 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
70094415 ATAATTTGAA
70094425 TATTATAAATTTAAATAT
1 TATTATAAATTTAAATAT
70094443 TATT-TAAATTTATAATAT
1 TATTATAAATTTA-AATAT
70094461 T
1 T
70094462 CAAATTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TATTATAAATTTAAATAT
Found at i:70097637 original size:25 final size:25
Alignment explanation
Indices: 70097603--70097653 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
70097593 CAAGTGATTG
70097603 TCCATAAGTTGAATGTGTTCCCAGA
1 TCCATAAGTTGAATGTGTTCCCAGA
70097628 TCCATAAGTTGAATGTGTTCCCAGA
1 TCCATAAGTTGAATGTGTTCCCAGA
70097653 T
1 T
70097654 ACAAAACTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (25 bp):
TCCATAAGTTGAATGTGTTCCCAGA
Found at i:70102537 original size:17 final size:18
Alignment explanation
Indices: 70102515--70102548 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
70102505 ACAACACTCC
*
70102515 TTTCTT-CTTCACTCTCG
1 TTTCTTCCTTCAATCTCG
70102532 TTTCTTCCTTCAATCTC
1 TTTCTTCCTTCAATCTC
70102549 ACTCTCTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.09, C:0.35, G:0.03, T:0.53
Consensus pattern (18 bp):
TTTCTTCCTTCAATCTCG
Found at i:70102656 original size:15 final size:16
Alignment explanation
Indices: 70102631--70102662 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
70102621 TATCTCACAC
70102631 TCATCTTCTTTTTCTT
1 TCATCTTCTTTTTCTT
70102647 TCAT-TTCTTTTTCTT
1 TCATCTTCTTTTTCTT
70102662 T
1 T
70102663 TTCATTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (16 bp):
TCATCTTCTTTTTCTT
Found at i:70103657 original size:29 final size:28
Alignment explanation
Indices: 70103583--70103656 Score: 94
Period size: 30 Copynumber: 2.6 Consensus size: 28
70103573 CTCGCAAGAC
*
70103583 TTTTCACTTTTTTTTTAACTTGATTTTT
1 TTTTCACTTTTTTTTTAACTCGATTTTT
* **
70103611 TTGGTCACCTTTTTTTTTTGCTCGATTTTT
1 TT-TTCA-CTTTTTTTTTAACTCGATTTTT
70103641 TTTTCACTTTTTTTTT
1 TTTTCACTTTTTTTTT
70103657 TGAATTTTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
28 12 0.31
29 6 0.15
30 21 0.54
ACGTcount: A:0.09, C:0.14, G:0.07, T:0.70
Consensus pattern (28 bp):
TTTTCACTTTTTTTTTAACTCGATTTTT
Found at i:70103705 original size:11 final size:12
Alignment explanation
Indices: 70103679--70103712 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
70103669 TTCAATCAAT
70103679 TTTTTTTTTCGAA
1 TTTTTTTTT-GAA
70103692 TTTTTTTTTG-A
1 TTTTTTTTTGAA
70103703 TTTTTTTTTG
1 TTTTTTTTTG
70103713 TTACTCCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.52
12 1 0.05
13 9 0.43
ACGTcount: A:0.09, C:0.03, G:0.09, T:0.79
Consensus pattern (12 bp):
TTTTTTTTTGAA
Found at i:70103708 original size:13 final size:13
Alignment explanation
Indices: 70103636--70103711 Score: 55
Period size: 13 Copynumber: 5.5 Consensus size: 13
70103626 TTTTGCTCGA
* *
70103636 TTTTTTTTTCACT
1 TTTTTTTTTGATT
70103649 TTTTTTTTTGAATT
1 TTTTTTTTTG-ATT
*
70103663 TTTTTTTTCAATCAATT
1 TTTTTTTT---T-GATT
* *
70103680 TTTTTTTTCGA-A
1 TTTTTTTTTGATT
70103692 TTTTTTTTTGATT
1 TTTTTTTTTGATT
70103705 TTTTTTT
1 TTTTTTT
70103712 GTTACTCCAA
Statistics
Matches: 49, Mismatches: 8, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
12 10 0.20
13 17 0.35
14 10 0.20
17 12 0.24
ACGTcount: A:0.13, C:0.07, G:0.04, T:0.76
Consensus pattern (13 bp):
TTTTTTTTTGATT
Found at i:70106139 original size:16 final size:19
Alignment explanation
Indices: 70106120--70106158 Score: 57
Period size: 16 Copynumber: 2.2 Consensus size: 19
70106110 TTACAAAGAT
70106120 AAAAAATC-T-GTG-AGGA
1 AAAAAATCTTAGTGAAGGA
70106136 AAAAAATCTTAGTGAAGGA
1 AAAAAATCTTAGTGAAGGA
70106155 AAAA
1 AAAA
70106159 GAATACACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 8 0.40
17 1 0.05
18 3 0.15
19 8 0.40
ACGTcount: A:0.56, C:0.05, G:0.21, T:0.18
Consensus pattern (19 bp):
AAAAAATCTTAGTGAAGGA
Found at i:70116720 original size:3 final size:3
Alignment explanation
Indices: 70116712--70116771 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
70116702 ACCGGACTGC
70116712 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
70116760 AAT AAT AAT AAT
1 AAT AAT AAT AAT
70116772 TTGTTAACAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:70121585 original size:2 final size:2
Alignment explanation
Indices: 70121580--70121606 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
70121570 ATATATATAT
70121580 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
70121607 TTTGTTAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:70122643 original size:15 final size:15
Alignment explanation
Indices: 70122606--70122644 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
70122596 AAATATTATA
70122606 AAAGAG-GAAAAAAT
1 AAAGAGAGAAAAAAT
*
70122620 AAA-ATAGAAAAAAT
1 AAAGAGAGAAAAAAT
70122634 AAAGAGAGAAA
1 AAAGAGAGAAA
70122645 TAATGTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 1 0.05
14 14 0.67
15 6 0.29
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (15 bp):
AAAGAGAGAAAAAAT
Found at i:70124638 original size:16 final size:18
Alignment explanation
Indices: 70124606--70124639 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
70124596 ATAAAAAGGA
70124606 AAAAACTAATATTTTTAT
1 AAAAACTAATATTTTTAT
70124624 AAAAA-TAAT-TTTTTAT
1 AAAAACTAATATTTTTAT
70124640 TTTTTTGGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (18 bp):
AAAAACTAATATTTTTAT
Found at i:70124819 original size:63 final size:65
Alignment explanation
Indices: 70124683--70124819 Score: 145
Period size: 63 Copynumber: 2.1 Consensus size: 65
70124673 ACTTCAAAGT
*
70124683 TAAAAAAAAAATGATTTTTTGCATTTTTGGGTGTCGATGTTGAAGTGGCCAGCACCAGTTCAGAA
1 TAAAAAAAAAATGATCTTTTG-ATTTTTGGGTGTCGATGTTGAAGTGGCCAGCACCAGTTCAGAA
*
70124748 C
65 A
** * * * * * * *
70124749 T-TTAAAAAAATGATCTTTTG-TTTTTTGGTGTTGGTGTTGAAGTGGCCGGTATCGGTTCA-AAA
1 TAAAAAAAAAATGATCTTTTGATTTTTGGGTGTCGATGTTGAAGTGGCCAGCACCAGTTCAGAAA
70124811 TAAAAAAAA
1 TAAAAAAAA
70124820 TGGATTGAGG
Statistics
Matches: 57, Mismatches: 13, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
62 3 0.05
63 37 0.65
65 16 0.28
66 1 0.02
ACGTcount: A:0.32, C:0.10, G:0.23, T:0.35
Consensus pattern (65 bp):
TAAAAAAAAAATGATCTTTTGATTTTTGGGTGTCGATGTTGAAGTGGCCAGCACCAGTTCAGAAA
Found at i:70125289 original size:29 final size:24
Alignment explanation
Indices: 70125239--70125298 Score: 66
Period size: 29 Copynumber: 2.3 Consensus size: 24
70125229 TAACTTATTT
*
70125239 TATTAAATAAAAAAATTTAAAATA
1 TATTAAATAAAAAAATTTAAAAAA
70125263 TATTAAATAATCAAATACATTTAAAAAAA
1 TATTAAATAA--AAA-A-ATTT-AAAAAA
70125292 TATTAAA
1 TATTAAA
70125299 ACAAGAAACA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 10 0.33
26 3 0.10
27 1 0.03
28 4 0.13
29 12 0.40
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (24 bp):
TATTAAATAAAAAAATTTAAAAAA
Found at i:70125378 original size:16 final size:17
Alignment explanation
Indices: 70125355--70125407 Score: 58
Period size: 16 Copynumber: 3.2 Consensus size: 17
70125345 CACAATTTGA
70125355 AAAATATAATAAAAATT
1 AAAATATAATAAAAATT
* *
70125372 -AATTAT-ATTAAAATT
1 AAAATATAATAAAAATT
70125387 AAAATATAATTAAAAA-T
1 AAAATATAA-TAAAAATT
70125404 AAAA
1 AAAA
70125408 AAAAAATATT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
15 8 0.28
16 10 0.34
17 6 0.21
18 5 0.17
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AAAATATAATAAAAATT
Found at i:70126130 original size:23 final size:23
Alignment explanation
Indices: 70126104--70126165 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 23
70126094 ACTTTTTAAC
70126104 TTTTAATTTTTTTACTAATAATAT
1 TTTTAATTTTTTTA-TAATAATAT
*
70126128 TTTT-ATTTGTGTTT-TAGTAATAT
1 TTTTAATTT-T-TTTATAATAATAT
70126151 TTTTATATTTTTTTA
1 TTTTA-ATTTTTTTA
70126166 ATCTCAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
23 19 0.59
24 6 0.19
25 7 0.22
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.68
Consensus pattern (23 bp):
TTTTAATTTTTTTATAATAATAT
Found at i:70127030 original size:17 final size:16
Alignment explanation
Indices: 70126992--70127033 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
70126982 ATTATCACTT
* *
70126992 TAAAATTAAAAAAATT
1 TAAAATTTAAAAAATA
70127008 TAAAATTTAAAAAATA
1 TAAAATTTAAAAAATA
70127024 TATAAATTTA
1 TA-AAATTTA
70127034 TTAAAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
TAAAATTTAAAAAATA
Found at i:70128035 original size:16 final size:16
Alignment explanation
Indices: 70127998--70128037 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
70127988 CAATGATGAA
70127998 AGAAAATTGAAGGAAT
1 AGAAAATTGAAGGAAT
*
70128014 -GAAAAATTGAAGGGAT
1 AG-AAAATTGAAGGAAT
70128030 AGAAAATT
1 AGAAAATT
70128038 AAAAAGATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 1 0.05
16 19 0.90
17 1 0.05
ACGTcount: A:0.55, C:0.00, G:0.25, T:0.20
Consensus pattern (16 bp):
AGAAAATTGAAGGAAT
Found at i:70129561 original size:17 final size:18
Alignment explanation
Indices: 70129525--70129562 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
70129515 ATATTAATTT
*
70129525 ATTATTTGAGTAATTAAA
1 ATTATTTAAGTAATTAAA
*
70129543 ATTATTTAAGTTA-TAAA
1 ATTATTTAAGTAATTAAA
70129560 ATT
1 ATT
70129563 TAACTGGACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (18 bp):
ATTATTTAAGTAATTAAA
Found at i:70129762 original size:18 final size:18
Alignment explanation
Indices: 70129739--70129774 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
70129729 CGCCACTTGG
70129739 CTAGTTCAACCAATTCAA
1 CTAGTTCAACCAATTCAA
*
70129757 CTAGTTCAATCAATTCAA
1 CTAGTTCAACCAATTCAA
70129775 TAAAAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.25, G:0.06, T:0.31
Consensus pattern (18 bp):
CTAGTTCAACCAATTCAA
Found at i:70134155 original size:22 final size:23
Alignment explanation
Indices: 70134113--70134155 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
70134103 GGAAGATACC
70134113 AACAACATGAATGTCATAAATAT
1 AACAACATGAATGTCATAAATAT
70134136 AACAACA-GAACTG-CATAAAT
1 AACAACATGAA-TGTCATAAAT
70134156 TAAAGTAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.53, C:0.16, G:0.09, T:0.21
Consensus pattern (23 bp):
AACAACATGAATGTCATAAATAT
Found at i:70139997 original size:87 final size:86
Alignment explanation
Indices: 70139853--70140046 Score: 198
Period size: 87 Copynumber: 2.2 Consensus size: 86
70139843 ATTTTTGTAC
* * * *
70139853 AAAAACAATTAAGCCCCT-CTTTTTTTTATACTCAATTGAGCACTTAAACATTTAAAATGTATTA
1 AAAAAAAATTAAGCCCCTGC-TTTTTTTATACTCAATTGAGCAATTAAACATTTAAAATGCATCA
*
70139917 AAAAGACTCTCAAACTTCTTCAAA
65 AAAAGACCCTCAAACTTCTTC--A
* * *
70139941 AAAAAAAATTAAGCCCATGCTTTTTTT-TACTCAATTG-GATAATTGAAC-TTTCAAAATGCATC
1 AAAAAAAATTAAGCCCCTGCTTTTTTTATACTCAATTGAG-CAATTAAACATTT-AAAATGCATC
* * * *
70140003 AAAAATACCCTTAAATTTTTTCA
64 AAAAAGACCCTCAAACTTCTTCA
*
70140026 AAAAATAATTAAGCCCCTGCT
1 AAAAAAAATTAAGCCCCTGCT
70140047 CTTAATAAAA
Statistics
Matches: 89, Mismatches: 14, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
85 20 0.22
86 4 0.04
87 41 0.46
88 23 0.26
89 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.07, T:0.34
Consensus pattern (86 bp):
AAAAAAAATTAAGCCCCTGCTTTTTTTATACTCAATTGAGCAATTAAACATTTAAAATGCATCAA
AAAGACCCTCAAACTTCTTCA
Found at i:70140130 original size:10 final size:10
Alignment explanation
Indices: 70140090--70140136 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 10
70140080 TAAATTTTAG
70140090 AAAAATTATT
1 AAAAATTATT
** *
70140100 AAATTTTAAT
1 AAAAATTATT
70140110 AAAAATT-TT
1 AAAAATTATT
*
70140119 AAAATTTATT
1 AAAAATTATT
70140129 AAAAATTA
1 AAAAATTA
70140137 GATTTTTTTA
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
9 7 0.25
10 21 0.75
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (10 bp):
AAAAATTATT
Found at i:70140196 original size:19 final size:19
Alignment explanation
Indices: 70140081--70140197 Score: 85
Period size: 19 Copynumber: 6.2 Consensus size: 19
70140071 AACAAATAAT
* *
70140081 AAATTTTAGAAAAATTATT
1 AAATTTTATAAAAATTATA
*
70140100 AAATTTTAATAAAAATTTTA
1 AAATTTT-ATAAAAATTATA
*
70140120 AAA-TTTATTAAAAATTAGA
1 AAATTTTA-TAAAAATTATA
*** *
70140139 TTTTTTTATAAAAATTGTA
1 AAATTTTATAAAAATTATA
** * *
70140158 AAA-AATAAAAAAATTGTA
1 AAATTTTATAAAAATTATA
*
70140176 AAATTTTATAAAAATCATA
1 AAATTTTATAAAAATTATA
70140195 AAA
1 AAA
70140198 AAATAAACAA
Statistics
Matches: 73, Mismatches: 21, Indels: 8
0.72 0.21 0.08
Matches are distributed among these distances:
18 16 0.22
19 41 0.56
20 16 0.22
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.39
Consensus pattern (19 bp):
AAATTTTATAAAAATTATA
Found at i:70142555 original size:23 final size:24
Alignment explanation
Indices: 70142503--70142555 Score: 56
Period size: 23 Copynumber: 2.2 Consensus size: 24
70142493 TTAAAATAAA
* *
70142503 ATATTTCTTGCTTTATGATTTATT
1 ATATATCTTGCTTTATGATATATT
*
70142527 AAATATCTT-CTTTAT-ATATATAT
1 ATATATCTTGCTTTATGATATAT-T
70142550 ATATAT
1 ATATAT
70142556 GAAATTATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
22 5 0.21
23 12 0.50
24 7 0.29
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.57
Consensus pattern (24 bp):
ATATATCTTGCTTTATGATATATT
Found at i:70143570 original size:132 final size:131
Alignment explanation
Indices: 70143324--70143694 Score: 458
Period size: 132 Copynumber: 2.8 Consensus size: 131
70143314 CAAGTATTCT
* * * *
70143324 TTTAAAAATTCTTTACAACGAAGACGAGATTCAATATTTGGCAATTCACGGAATAGTGCCCTAAC
1 TTTAAAAATTCTTTAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAAC
* *
70143389 GTATTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGC
66 GTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATGC
70143454 C
131 C
* * * *
70143455 TTTCAAAAATTCTTTAAAACGAAGACGAGGTTTGATGTTTGGCAATTCGCGGAAGCGTGCCCTAA
1 TTT-AAAAATTCTTTAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAA
* * *
70143520 CGTGTTGGGTTGCAATTTCGCGTTTGCTCGAAATAATCGAATGTCACTTCAAAATTTCATTCATG
65 CGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATG
*
70143585 TC
130 CC
** * * * * *
70143587 TATT-AAAA-TCCCTAAAACGAAGGCGATATGCGATATTTGGCAATTTGTGGAATCGTGCCCTAA
1 T-TTAAAAATTCTTTAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAA
** * * * * *
70143650 CGTGTTGGGTCACAATTTCCCATTTGTTTAAAATAATCAAATATC
65 CGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATC
70143695 CCTCAGGTCT
Statistics
Matches: 204, Mismatches: 34, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
130 80 0.39
131 7 0.03
132 115 0.56
133 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (131 bp):
TTTAAAAATTCTTTAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAAC
GTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATGC
C
Found at i:70144502 original size:20 final size:21
Alignment explanation
Indices: 70144477--70144529 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
70144467 GCACTATATA
70144477 TTTTATAATTTTTTAC-AATT
1 TTTTATAATTTTTTACTAATT
*
70144497 TTTTAT-ATTTTTTTCTAATT
1 TTTTATAATTTTTTACTAATT
* *
70144517 TTTAATAAATTTT
1 TTTTATAATTTTT
70144530 AATATTTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 8 0.29
20 15 0.54
21 5 0.18
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTTATAATTTTTTACTAATT
Found at i:70144535 original size:30 final size:30
Alignment explanation
Indices: 70144477--70144536 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
70144467 GCACTATATA
* * *
70144477 TTTTATAATTTTTTACAATTTTTTATATTT
1 TTTTATAATTTTTAACAAATTTTAATATTT
* *
70144507 TTTTCTAATTTTTAATAAATTTTAATATTT
1 TTTTATAATTTTTAACAAATTTTAATATTT
70144537 GAATTTTATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (30 bp):
TTTTATAATTTTTAACAAATTTTAATATTT
Found at i:70144749 original size:88 final size:89
Alignment explanation
Indices: 70144614--70144827 Score: 256
Period size: 88 Copynumber: 2.4 Consensus size: 89
70144604 AAAAGCATAG
* * * *
70144614 GCTTAATTGCTTCTTTTGAAAAAAATTTGAGAG-TTTTTTTAATGCATTTTGAAAGTTCAAGCAC
1 GCTTAATTACTTTTTTTG-AAAAAATTTGAGGGCTTTTTTTAATGCATTTTAAAAGTTCAAGCAC
* *
70144678 CCAATTAAGTGCAAAAAAAAAGTACGA
65 CCAAATAAGTGC-AAAAAAAAG-AAGA
* ** * *
70144705 GCTTAATT-GTTTTTTT-AAAAGGTTTGAGGGCTTTTTTT-ATGCATTTTAAAAGTTTAAGTACC
1 GCTTAATTACTTTTTTTGAAAAAATTTGAGGGCTTTTTTTAATGCATTTTAAAAGTTCAAGCACC
*
70144767 CAAATGAGTGCAAAAAAAAGAAGA
66 CAAATAAGTGCAAAAAAAAGAAGA
*
70144791 GCTTAATTACTTTTTTTGAAAAAATTTGAGGACTTTT
1 GCTTAATTACTTTTTTTGAAAAAATTTGAGGGCTTTT
70144828 GGCACCTTTA
Statistics
Matches: 105, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
86 11 0.10
87 16 0.15
88 57 0.54
89 7 0.07
90 6 0.06
91 8 0.08
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (89 bp):
GCTTAATTACTTTTTTTGAAAAAATTTGAGGGCTTTTTTTAATGCATTTTAAAAGTTCAAGCACC
CAAATAAGTGCAAAAAAAAGAAGA
Found at i:70148576 original size:23 final size:23
Alignment explanation
Indices: 70148534--70148591 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
70148524 ATCAAAAGAA
*
70148534 AGATCCAAAA-G-AAAAAAAATG
1 AGATCCAAAAGGTTAAAAAAATG
70148555 AGATCCAAAAGGTTAAAAAAATG
1 AGATCCAAAAGGTTAAAAAAATG
70148578 AGATCCAAAAGGTT
1 AGATCCAAAAGGTT
70148592 CACCTGGATC
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
21 10 0.29
22 1 0.03
23 23 0.68
ACGTcount: A:0.57, C:0.10, G:0.17, T:0.16
Consensus pattern (23 bp):
AGATCCAAAAGGTTAAAAAAATG
Found at i:70151068 original size:46 final size:44
Alignment explanation
Indices: 70151013--70151133 Score: 154
Period size: 46 Copynumber: 2.7 Consensus size: 44
70151003 GACGAGAGCT
*
70151013 AGTGTAAGACTTGTCTGGGACATGCATCAGCCT-CGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCTACGAG-T-TAAGCC
* * *
70151059 AGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGTTAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGCCTACGAGTTAAGCC
70151103 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
70151134 GTATCCTATC
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
44 14 0.21
45 17 0.25
46 36 0.54
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCTACGAGTTAAGCC
Found at i:70152761 original size:29 final size:29
Alignment explanation
Indices: 70152720--70152776 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
70152710 ATGATCCAAT
70152720 TGTGTATATATATATAAGTAAAAAATAAG
1 TGTGTATATATATATAAGTAAAAAATAAG
70152749 TGTGTATATATATATAAGTAAAAAATAA
1 TGTGTATATATATATAAGTAAAAAATAA
70152777 CCATTATTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (29 bp):
TGTGTATATATATATAAGTAAAAAATAAG
Found at i:70154403 original size:7 final size:7
Alignment explanation
Indices: 70154393--70154431 Score: 69
Period size: 7 Copynumber: 5.6 Consensus size: 7
70154383 CCTTAAACCT
*
70154393 TAAATCA
1 TAAAACA
70154400 TAAAACA
1 TAAAACA
70154407 TAAAACA
1 TAAAACA
70154414 TAAAACA
1 TAAAACA
70154421 TAAAACA
1 TAAAACA
70154428 TAAA
1 TAAA
70154432 CCCCTACCCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.69, C:0.13, G:0.00, T:0.18
Consensus pattern (7 bp):
TAAAACA
Found at i:70154447 original size:14 final size:15
Alignment explanation
Indices: 70154430--70154466 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
70154420 ATAAAACATA
70154430 AACCCCT-ACCCCTT
1 AACCCCTAACCCCTT
70154444 AACCCCTAACCCC-T
1 AACCCCTAACCCCTT
*
70154458 AACACCTAA
1 AACCCCTAA
70154467 ACCTTAAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.32, C:0.51, G:0.00, T:0.16
Consensus pattern (15 bp):
AACCCCTAACCCCTT
Found at i:70154495 original size:7 final size:7
Alignment explanation
Indices: 70154485--70154608 Score: 63
Period size: 7 Copynumber: 17.4 Consensus size: 7
70154475 CCCCAATCCT
70154485 TAAACCA
1 TAAACCA
*
70154492 TAAATCA
1 TAAACCA
*
70154499 TAAATCA
1 TAAACCA
70154506 TAAACCA
1 TAAACCA
* *
70154513 TAATCCC
1 TAAACCA
70154520 TAAACCCA
1 TAAA-CCA
*
70154528 TAATCCA
1 TAAACCA
*
70154535 TAAACCT
1 TAAACCA
**
70154542 TAAAATA
1 TAAACCA
*
70154549 GTAATATC-
1 -TAA-ACCA
70154557 TAAA-CA
1 TAAACCA
*
70154563 TTAAACCC
1 -TAAACCA
70154571 TAAACCA
1 TAAACCA
* *
70154578 TATACCC
1 TAAACCA
*
70154585 TAAACCC
1 TAAACCA
*
70154592 TAAACCT
1 TAAACCA
*
70154599 TAAACTA
1 TAAACCA
70154606 TAA
1 TAA
70154609 TGATAATTAA
Statistics
Matches: 89, Mismatches: 22, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
5 1 0.01
6 1 0.01
7 77 0.87
8 9 0.10
9 1 0.01
ACGTcount: A:0.49, C:0.26, G:0.01, T:0.24
Consensus pattern (7 bp):
TAAACCA
Found at i:70154510 original size:35 final size:36
Alignment explanation
Indices: 70154471--70154538 Score: 86
Period size: 35 Copynumber: 1.9 Consensus size: 36
70154461 ACCTAAACCT
* *
70154471 TAAACCCCAATCCTTAAA-CCATAAAT-CATAAATCA
1 TAAACCACAATCCCTAAACCCAT-AATCCATAAATCA
*
70154506 TAAACCATAATCCCTAAACCCATAATCCATAAA
1 TAAACCACAATCCCTAAACCCATAATCCATAAA
70154539 CCTTAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
35 18 0.64
36 10 0.36
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.22
Consensus pattern (36 bp):
TAAACCACAATCCCTAAACCCATAATCCATAAATCA
Found at i:70154530 original size:15 final size:15
Alignment explanation
Indices: 70154504--70154540 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
70154494 AATCATAAAT
70154504 CATAAA-CCATAATC
1 CATAAACCCATAATC
*
70154518 CCTAAACCCATAATC
1 CATAAACCCATAATC
70154533 CATAAACC
1 CATAAACC
70154541 TTAAAATAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19
Consensus pattern (15 bp):
CATAAACCCATAATC
Found at i:70155062 original size:39 final size:40
Alignment explanation
Indices: 70154987--70155132 Score: 170
Period size: 40 Copynumber: 3.7 Consensus size: 40
70154977 TTTTTTTGTA
* * *
70154987 GTGTTTTCCAAAAAGCGCCGCTAATGGTCGACCTATAGCG
1 GTGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCG
* *
70155027 GTGTTTTTCAAAAAGC-ACGCTAATGCTTGATCTATAGCG
1 GTGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCG
** * * *
70155066 GCATTTTTCAAAAAGCGCCGCTAATTCTCAATCTATAGTG
1 GTGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCG
*
70155106 GCT-TTTTTTAAAAAGCGCCGCTAATGC
1 G-TGTTTTTCAAAAAGCGCCGCTAATGC
70155133 CACTAAAGCT
Statistics
Matches: 89, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 33 0.37
40 56 0.63
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (40 bp):
GTGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCG
Found at i:70157716 original size:20 final size:20
Alignment explanation
Indices: 70157691--70157729 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
70157681 TGTTTTTATA
70157691 AAAATATAC-AAGAAAACTTC
1 AAAATA-ACTAAGAAAACTTC
*
70157711 AAAATACCTAAGAAAACTT
1 AAAATAACTAAGAAAACTT
70157730 TAAATAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.59, C:0.15, G:0.05, T:0.21
Consensus pattern (20 bp):
AAAATAACTAAGAAAACTTC
Found at i:70159940 original size:24 final size:23
Alignment explanation
Indices: 70159896--70159940 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
70159886 ATAAACATAA
* **
70159896 AAAATGTTAAAATAATTATATAT
1 AAAATGTAAAAATAAAAATATAT
70159919 AAAATGTAATAAATAAAAATAT
1 AAAATGTAA-AAATAAAAATAT
70159941 GTATAAAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 8 0.44
24 10 0.56
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (23 bp):
AAAATGTAAAAATAAAAATATAT
Found at i:70166783 original size:85 final size:85
Alignment explanation
Indices: 70166619--70166783 Score: 208
Period size: 85 Copynumber: 1.9 Consensus size: 85
70166609 TGTATTAATG
* * * * *
70166619 GGAAACGCTAATGGAAAGGTGCAGTGATACAAAGTCTCAAAAGATGGAGGAATCATAGGATAATA
1 GGAAACGCTAATGCAAAGGTGAAGTGACACAAAGTCTCAAAAGATGGAGAAATCAAAGGATAATA
* *
70166684 CAAAGAGTACTGAGTGAGGA
66 CAAAAACTACTGAGTGAGGA
* *
70166704 GGAAATGCTAATGCAAAGGTGAAGTGACGCAACA-TCTCAAAAGATGGAGAAATCAAAGGATAAT
1 GGAAACGCTAATGCAAAGGTGAAGTGACACAA-AGTCTCAAAAGATGGAGAAATCAAAGGATAAT
*
70166768 A-AAGAAACTATTGAGT
65 ACAA-AAACTACTGAGT
70166784 TTGAAAAATA
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
84 2 0.03
85 65 0.96
86 1 0.01
ACGTcount: A:0.44, C:0.11, G:0.27, T:0.18
Consensus pattern (85 bp):
GGAAACGCTAATGCAAAGGTGAAGTGACACAAAGTCTCAAAAGATGGAGAAATCAAAGGATAATA
CAAAAACTACTGAGTGAGGA
Found at i:70174154 original size:6 final size:6
Alignment explanation
Indices: 70174143--70174176 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
70174133 CCAATTGACA
* *
70174143 TAGGAT TAGGAT TAGGAT TAGGAC TAGGAG TAGG
1 TAGGAT TAGGAT TAGGAT TAGGAT TAGGAT TAGG
70174177 TATAGAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.32, C:0.03, G:0.38, T:0.26
Consensus pattern (6 bp):
TAGGAT
Found at i:70175961 original size:21 final size:22
Alignment explanation
Indices: 70175917--70175967 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
70175907 ATTGAATAAA
**
70175917 ATTATAATAAGATGTTATTTGT
1 ATTATAATAAGATGTTATAAGT
*
70175939 ATTA-AATAAGCTGTTATAAGT
1 ATTATAATAAGATGTTATAAGT
70175960 ATGTATAA
1 AT-TATAA
70175968 CTGATAATTG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 16 0.67
22 6 0.25
23 2 0.08
ACGTcount: A:0.41, C:0.02, G:0.14, T:0.43
Consensus pattern (22 bp):
ATTATAATAAGATGTTATAAGT
Found at i:70176369 original size:42 final size:43
Alignment explanation
Indices: 70176301--70176381 Score: 114
Period size: 42 Copynumber: 1.9 Consensus size: 43
70176291 CTCTCTGTTG
70176301 TGTAGGTTAACTCGGACAAGTAACCAGACACTA-TATGTCTCA
1 TGTAGGTTAACTCGGACAAGTAACCAGACACTATTATGTCTCA
*
70176343 TGTAGGTTAACTC-GA-AAGGGTGACCAGACACTATTATGT
1 TGTAGGTTAACTCGGACAA--GTAACCAGACACTATTATGT
70176382 GATTCACGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
40 2 0.06
41 2 0.06
42 26 0.74
43 5 0.14
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (43 bp):
TGTAGGTTAACTCGGACAAGTAACCAGACACTATTATGTCTCA
Found at i:70176423 original size:46 final size:46
Alignment explanation
Indices: 70176360--70176792 Score: 436
Period size: 46 Copynumber: 9.4 Consensus size: 46
70176350 TAACTCGAAA
* * *
70176360 GGGTGACCAGACACTATTATGTGATTCACGTAGGTTCAACCCTAAC
1 GGGTGACCAGGCACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
* * * * *
70176406 GAGTGACCAGGCGCTATTATCTGATTCCCTTAGGTTAAACCCTAAC
1 GGGTGACCAGGCACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
** ** * * *
70176452 GAATGACCAGGCGTTATTAACTGATTTGCGTAGATTCAACCCTAAC
1 GGGTGACCAGGCACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
* * * * * *
70176498 GGGTGACTATGCACTATTATTTGATTCACGTAGGTTAAACCCTAAA
1 GGGTGACCAGGCACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
* ** * * * *
70176544 GGGTGACTAAACACTATTATCTGATTCACATAGGCTCAACCCTAAT
1 GGGTGACCAGGCACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
*
70176590 GGGTGA-CTGGACACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
1 GGGTGACCAGG-CACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
* * * * *
70176636 GGGTGACCAAGCACTATTATTTGATTTGCATAGGTTCAACCTTAAC
1 GGGTGACCAGGCACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
* * * * *
70176682 GGTTGACCAGACACTATTATCTGATTTGCATAGGTTCAACCCTAAT
1 GGGTGACCAGGCACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
** * * * *
70176728 GGGTGACCAGGCGTTATTATCTAATTCGTGTAGGTTTAACCCTAAT
1 GGGTGACCAGGCACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
*
70176774 GGGTGACCAGACACTATTA
1 GGGTGACCAGGCACTATTA
70176793 CTTTCACCTG
Statistics
Matches: 318, Mismatches: 67, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
46 316 0.99
47 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (46 bp):
GGGTGACCAGGCACTATTATCTGATTCGCGTAGGTTCAACCCTAAC
Found at i:70184456 original size:26 final size:25
Alignment explanation
Indices: 70184402--70184457 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
70184392 TTTGCCCGGG
* *
70184402 TTTAAACCCAAACCCATTTACCCCT
1 TTTAAACCCAAACCCATTGACCCCA
*
70184427 TTTACAACCCAAACCCGGTTGA-CCCA
1 TTTA-AACCCAAACCC-ATTGACCCCA
70184453 TTTAA
1 TTTAA
70184458 TAACCCCTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 5 0.19
26 18 0.69
27 3 0.12
ACGTcount: A:0.32, C:0.36, G:0.05, T:0.27
Consensus pattern (25 bp):
TTTAAACCCAAACCCATTGACCCCA
Found at i:70184462 original size:27 final size:26
Alignment explanation
Indices: 70184406--70184463 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
70184396 CCCGGGTTTA
* * *
70184406 AACCCAAACCCATTTACCCCTTTTAC
1 AACCCAAACCCATTGACCCATTTAAC
* *
70184432 AACCCAAACCCGGTTGACCCATTTAAT
1 AACCCAAACCC-ATTGACCCATTTAAC
70184459 AACCC
1 AACCC
70184464 CTGAACCCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 11 0.42
27 15 0.58
ACGTcount: A:0.33, C:0.40, G:0.05, T:0.22
Consensus pattern (26 bp):
AACCCAAACCCATTGACCCATTTAAC
Found at i:70186353 original size:3 final size:3
Alignment explanation
Indices: 70186345--70186390 Score: 67
Period size: 3 Copynumber: 15.3 Consensus size: 3
70186335 GTCACTTTGC
*
70186345 TTA TTA TTA TTA TTA TTA TTA -TA TTTA TTG TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
70186390 T
1 T
70186391 CAGTATCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
2 2 0.05
3 35 0.90
4 2 0.05
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:70188479 original size:25 final size:23
Alignment explanation
Indices: 70188427--70188486 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 23
70188417 ATAGCTTGGA
*
70188427 CGAGCAATCCTGTTATAGTCCTCT
1 CGAGC-ATCCTGTTATAGTCCTCG
70188451 CGAGCATCCTGTTATATAGCTCCT-G
1 CGAGCATCCTG-T-TATAG-TCCTCG
70188476 CGAGCATCCTG
1 CGAGCATCCTG
70188487 ATCGGTAGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
23 6 0.19
24 6 0.19
25 16 0.50
26 4 0.12
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (23 bp):
CGAGCATCCTGTTATAGTCCTCG
Found at i:70204944 original size:17 final size:17
Alignment explanation
Indices: 70204914--70204947 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
70204904 TCTGAGATTC
**
70204914 TTAGATTGCGTGGAGTG
1 TTAGATTGAATGGAGTG
70204931 TTAGATTGAATGGAGTG
1 TTAGATTGAATGGAGTG
70204948 CCTGTCTCCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.03, G:0.38, T:0.35
Consensus pattern (17 bp):
TTAGATTGAATGGAGTG
Found at i:70224469 original size:90 final size:92
Alignment explanation
Indices: 70224353--70224538 Score: 277
Period size: 90 Copynumber: 2.0 Consensus size: 92
70224343 TAAATGCAGT
* * * * *
70224353 AATTCGCGGAGTGGGGGTATCCTATAGTTATAGTAGATTAATACACAATCTGTACAAGACATAGT
1 AATTCGCAGAGTGAGGGTATCCTATAGTTATAGTAGATTAATACACAATCTGTACAAGAAAAAAT
*
70224418 TGCTTCTGAATC-ACAA-ACTTGCACA
66 TGCTTCTGAATCAAAAATACTTGCACA
* *
70224443 AATTCGCAGAGTGATGGTATCTTATAGTTATAGTAGATTAATACACAATCTGTACAAGAAAAAAT
1 AATTCGCAGAGTGAGGGTATCCTATAGTTATAGTAGATTAATACACAATCTGTACAAGAAAAAAT
70224508 TGCTTCTGAATCAAAAAATACTTGCACA
66 TGCTTCTGAATC-AAAAATACTTGCACA
70224536 AAT
1 AAT
70224539 AGCTATCTCA
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
90 70 0.82
92 3 0.04
93 12 0.14
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.30
Consensus pattern (92 bp):
AATTCGCAGAGTGAGGGTATCCTATAGTTATAGTAGATTAATACACAATCTGTACAAGAAAAAAT
TGCTTCTGAATCAAAAATACTTGCACA
Found at i:70225172 original size:21 final size:20
Alignment explanation
Indices: 70225143--70225181 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
70225133 ACGCCCACGA
70225143 AAAGATCGCTTGGATTTAAG
1 AAAGATCGCTTGGATTTAAG
70225163 AAAGAGTCGCTTGGATTTA
1 AAAGA-TCGCTTGGATTTA
70225182 TCCATGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (20 bp):
AAAGATCGCTTGGATTTAAG
Found at i:70225346 original size:15 final size:14
Alignment explanation
Indices: 70225324--70225360 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
70225314 TTTATCATAT
*
70225324 AAATATATAATTTA
1 AAATATATAAATTA
70225338 AATATATATAAATTA
1 AA-ATATATAAATTA
70225353 AAATATAT
1 AAATATAT
70225361 TAATAATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATATATAAATTA
Found at i:70225356 original size:16 final size:16
Alignment explanation
Indices: 70225326--70225392 Score: 59
Period size: 16 Copynumber: 4.1 Consensus size: 16
70225316 TATCATATAA
*
70225326 ATATAT-AATTTAAAT
1 ATATATAAATTAAAAT
70225341 ATATATAAATTAAAAT
1 ATATATAAATTAAAAT
*
70225357 ATAT-TAATAATATAGAAT
1 ATATAT-A-AAT-TAAAAT
70225375 AATATATAAA-TAAAAT
1 -ATATATAAATTAAAAT
70225391 AT
1 AT
70225393 GCGTTATATG
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
15 9 0.21
16 18 0.42
17 3 0.07
18 7 0.16
19 5 0.12
20 1 0.02
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (16 bp):
ATATATAAATTAAAAT
Found at i:70229126 original size:30 final size:29
Alignment explanation
Indices: 70229067--70229127 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
70229057 AAGTACGATG
* *
70229067 TTATACATGAATTTTAATTTTATGTAATT
1 TTATACATGAATATTAATTTAATGTAATT
70229096 TTATACATGAAATATTAATTTAAT-TCAATT
1 TTATACATG-AATATTAATTTAATGT-AATT
70229126 TT
1 TT
70229128 TGCAAATCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 10 0.36
30 18 0.64
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (29 bp):
TTATACATGAATATTAATTTAATGTAATT
Found at i:70231988 original size:90 final size:89
Alignment explanation
Indices: 70231860--70232029 Score: 243
Period size: 90 Copynumber: 1.9 Consensus size: 89
70231850 TGCCAACACT
* * *
70231860 ATATCCCAGATATGGTCTTACATGGGATCACCACTCGATGCCAATGCCATGTCCCAGACATGGTC
1 ATATCCCAGATATGGTCTTACAT-GGATAACCAATCGATGCCAATGCCATATCCCAGACATGGTC
70231925 TTACATGGGATCTCAAATTAACGCC
65 TTACATGGGATCTCAAATTAACGCC
* * *
70231950 ATATCCCAGATATGGTCTTACAT-GATAACACATATCGATGCCGATGTCATATCCCAGATATGGT
1 ATATCCCAGATATGGTCTTACATGGATAAC-CA-ATCGATGCCAATGCCATATCCCAGACATGGT
*
70232014 CTTATATGGGATCTCA
64 CTTACATGGGATCTCA
70232030 TTAACCTGAA
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
88 5 0.07
89 2 0.03
90 64 0.90
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (89 bp):
ATATCCCAGATATGGTCTTACATGGATAACCAATCGATGCCAATGCCATATCCCAGACATGGTCT
TACATGGGATCTCAAATTAACGCC
Found at i:70234252 original size:66 final size:66
Alignment explanation
Indices: 70234146--70234278 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
70234136 TCATCGATCA
70234146 CAATCATTTGTGCTAATCCTTTCCTACATACTTCTTGATCAAATCTCCAAGTTGAAAGATGCCTT
1 CAATCATTTGTGCTAATCCTTTCCTACATACTTCTTGATCAAATCTCCAAGTTGAAAGATGCCTT
70234211 C
66 C
* *
70234212 CAATCATTTGTGCTAATCCTTTTCTACATGCTTCTTGATCAAATCTCCAAGTTGAAAGATGCCTT
1 CAATCATTTGTGCTAATCCTTTCCTACATACTTCTTGATCAAATCTCCAAGTTGAAAGATGCCTT
70234277 C
66 C
70234278 C
1 C
70234279 CCCTTTCAAC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (66 bp):
CAATCATTTGTGCTAATCCTTTCCTACATACTTCTTGATCAAATCTCCAAGTTGAAAGATGCCTT
C
Found at i:70239257 original size:16 final size:16
Alignment explanation
Indices: 70239236--70239269 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
70239226 ATTGCTATGT
70239236 TCTTTTTAATTTAGAA
1 TCTTTTTAATTTAGAA
70239252 TCTTTTTAATTTAGAA
1 TCTTTTTAATTTAGAA
70239268 TC
1 TC
70239270 CTTAAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.09, G:0.06, T:0.56
Consensus pattern (16 bp):
TCTTTTTAATTTAGAA
Found at i:70240402 original size:43 final size:43
Alignment explanation
Indices: 70240265--70240436 Score: 179
Period size: 43 Copynumber: 4.0 Consensus size: 43
70240255 CATAGGATTC
* * * * *
70240265 CGATATGTGATTTCGTGAAAGACCACGTCTGAGACGTTGGCAT
1 CGATATATGATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
*
70240308 CGATTTGA-GATTTACGTGTAAGACCATGTCTGGGACATTGGCAT
1 CGATAT-ATGATTT-CGTGTAAGACCATGTCTGGGACATTGGCAT
* * *
70240352 C-TTATATGATTTCGTGTAAGACCGTGTCTGGGACAATGGCAT
1 CGATATATGATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
* * * *
70240394 CGATATATGATTACATGTAAAACC-TCGTCTAGGACATTGGCAT
1 CGATATATGATTTCGTGTAAGACCAT-GTCTGGGACATTGGCAT
70240437 TGTACAAACT
Statistics
Matches: 108, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
42 31 0.29
43 50 0.46
44 27 0.25
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
CGATATATGATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
Found at i:70248689 original size:49 final size:49
Alignment explanation
Indices: 70248626--70248767 Score: 151
Period size: 49 Copynumber: 2.9 Consensus size: 49
70248616 ATCGTATTGC
* *
70248626 AACTCAGGCTCCCAGTTTACGGTGGTTATACAATCATGGGTTCAAGTAT
1 AACTCAGGCTCCCAGTTGACGGTGGTTATACAATCACGGGTTCAAGTAT
* ** * * *
70248675 AACT-AGGGCTCCCAGCTGACGGCAGTTATGCAGTCACGGGTTGAAGTAT
1 AACTCA-GGCTCCCAGTTGACGGTGGTTATACAATCACGGGTTCAAGTAT
* * ** *
70248724 AACTCAAGCTCCCAGTTGATGGTGGTTATGTAGTCACGGGTTCA
1 AACTCAGGCTCCCAGTTGACGGTGGTTATACAATCACGGGTTCA
70248768 CATTACATGC
Statistics
Matches: 76, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
48 1 0.01
49 74 0.97
50 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (49 bp):
AACTCAGGCTCCCAGTTGACGGTGGTTATACAATCACGGGTTCAAGTAT
Found at i:70251394 original size:40 final size:40
Alignment explanation
Indices: 70251339--70251556 Score: 291
Period size: 40 Copynumber: 5.5 Consensus size: 40
70251329 CGGATGATAA
* * *
70251339 CCGGGCTAAGTCCCGAAGGAATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
70251379 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-TAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
70251419 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
70251459 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
70251499 CCGGGCTAAGTCTCGAAGGCATTTGAGCGAG-TAGCTGTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
70251539 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70251557 TACTTGGTTG
Statistics
Matches: 161, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 16 0.10
40 143 0.89
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:70256156 original size:15 final size:15
Alignment explanation
Indices: 70256119--70256157 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
70256109 AAATTTCACA
70256119 TTTCATA-TTATGTC
1 TTTCATATTTATGTC
**
70256133 TTTTGTATTTATGTC
1 TTTCATATTTATGTC
70256148 TTTCATATTT
1 TTTCATATTT
70256158 TGCATGCATG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.18, C:0.10, G:0.08, T:0.64
Consensus pattern (15 bp):
TTTCATATTTATGTC
Found at i:70270430 original size:36 final size:37
Alignment explanation
Indices: 70270363--70270434 Score: 101
Period size: 37 Copynumber: 2.0 Consensus size: 37
70270353 TAATTAAACT
70270363 TAATCACTTTAATATCAAATTTAATCTAATATTAAAA
1 TAATCACTTTAATATCAAATTTAATCTAATATTAAAA
* * * *
70270400 TAATCACTTTATTATTATA-TTAATTTAATATTAAA
1 TAATCACTTTAATATCAAATTTAATCTAATATTAAA
70270435 TCTTATTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 15 0.48
37 16 0.52
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (37 bp):
TAATCACTTTAATATCAAATTTAATCTAATATTAAAA
Found at i:70270521 original size:20 final size:18
Alignment explanation
Indices: 70270474--70270580 Score: 69
Period size: 20 Copynumber: 5.8 Consensus size: 18
70270464 CAAGATAAAC
70270474 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
70270491 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
* *
70270511 ATTAAATTAATATAATAGT
1 ATTAAATTAATAT-TTAAT
* *
70270530 ATGAACATAAATA-TTAA-
1 ATTAA-ATTAATATTTAAT
*
70270547 ATTAAATTTAATATTAAACT
1 ATTAAA-TTAATATTTAA-T
*
70270567 ATTAAAATAATATT
1 ATTAAATTAATATT
70270581 ATTTTTGGAA
Statistics
Matches: 69, Mismatches: 10, Indels: 20
0.70 0.10 0.20
Matches are distributed among these distances:
16 1 0.01
17 17 0.25
18 7 0.10
19 17 0.25
20 27 0.39
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.41
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:70272862 original size:42 final size:42
Alignment explanation
Indices: 70272765--70272862 Score: 137
Period size: 42 Copynumber: 2.3 Consensus size: 42
70272755 ACGGTCAATC
*
70272765 ACACGC-CCATGTGTGAATCCGTGTGACACACACGACCAATAG
1 ACACGCTCC-TGTGTGAACCCGTGTGACACACACGACCAATAG
* *
70272807 ACATGCTCCTGTGTGAACCCGTGTGACACACACGGCCAATAG
1 ACACGCTCCTGTGTGAACCCGTGTGACACACACGACCAATAG
70272849 ACACGC-CCGTGTGT
1 ACACGCTCC-TGTGT
70272863 CTAAGCCGTG
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
41 2 0.04
42 46 0.92
43 2 0.04
ACGTcount: A:0.27, C:0.32, G:0.23, T:0.18
Consensus pattern (42 bp):
ACACGCTCCTGTGTGAACCCGTGTGACACACACGACCAATAG
Found at i:70273891 original size:23 final size:22
Alignment explanation
Indices: 70273816--70273918 Score: 100
Period size: 23 Copynumber: 4.5 Consensus size: 22
70273806 GCTAATAAAT
* *
70273816 AGTAAGCTCTATTAAGCTAAAAAC
1 AGTAAGCTCT-TTGAGCT-GAAAC
*
70273840 GGTAAGCTCTATTGAGCT-AAAC
1 AGTAAGCTCT-TTGAGCTGAAAC
*
70273862 AGTAAGCTCTTTCGAGCTGAATC
1 AGTAAGCTCTTT-GAGCTGAAAC
**
70273885 AGTAAGCTCCAATGAGCTGAAAC
1 AGTAAGCT-CTTTGAGCTGAAAC
70273908 AGTAAGCTCTT
1 AGTAAGCTCTT
70273919 ACGAGCTGTG
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
21 2 0.03
22 19 0.28
23 28 0.42
24 18 0.27
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (22 bp):
AGTAAGCTCTTTGAGCTGAAAC
Found at i:70274071 original size:9 final size:9
Alignment explanation
Indices: 70274057--70274099 Score: 54
Period size: 9 Copynumber: 4.9 Consensus size: 9
70274047 AAAGCATTCA
70274057 TATTTCAAG
1 TATTTCAAG
*
70274066 TATTTCAAT
1 TATTTCAAG
70274075 TATATTC-A-
1 TAT-TTCAAG
70274083 TATTTCAAG
1 TATTTCAAG
70274092 TATTTCAA
1 TATTTCAA
70274100 TTATATTCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
7 3 0.10
8 4 0.13
9 20 0.67
10 3 0.10
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.49
Consensus pattern (9 bp):
TATTTCAAG
Found at i:70274081 original size:26 final size:26
Alignment explanation
Indices: 70274052--70274118 Score: 116
Period size: 26 Copynumber: 2.5 Consensus size: 26
70274042 TCCTCAAAGC
70274052 ATTCATATTTCAAGTATTTCAATTAT
1 ATTCATATTTCAAGTATTTCAATTAT
70274078 ATTCATATTTCAAGTATTTCAATTAT
1 ATTCATATTTCAAGTATTTCAATTAT
70274104 ATTCATTCATTTCAA
1 ATTCA-T-ATTTCAA
70274119 CAAATATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 31 0.79
27 1 0.03
28 7 0.18
ACGTcount: A:0.34, C:0.13, G:0.03, T:0.49
Consensus pattern (26 bp):
ATTCATATTTCAAGTATTTCAATTAT
Found at i:70279062 original size:105 final size:105
Alignment explanation
Indices: 70278872--70279177 Score: 378
Period size: 105 Copynumber: 2.9 Consensus size: 105
70278862 ATCAATGCGT
* * * * * *
70278872 TATAGGTAACAACATCAGGCTCAATGCCTTGATTGCTCATTTTGTCACCAATATCTTCAGCTTCA
1 TATATGTAACAACATTAGGCTCAATGCCTTGCTTTCTCATTGTGTCAACAATATCTTCAGCTTCA
*
70278937 AAAACCATCCCCTCCTTACAAAGTGCATCGACCAATATAC
66 AAAACCATCCCCTCCTTACAAAGTGCATCAACCAATATAC
* * * *
70278977 TATATGTGACAACATTAGGCTCAATGCCTTGCTTTATCATTGTCTCAACAATATCTTTAGCTTCA
1 TATATGTAACAACATTAGGCTCAATGCCTTGCTTTCTCATTGTGTCAACAATATCTTCAGCTTCA
** * * *
70279042 GGAATCATCCCTTCCTTACAATGTGCATCAACCAATATAC
66 AAAACCATCCCCTCCTTACAAAGTGCATCAACCAATATAC
*** *
70279082 TATATGTAACAACATTAGGCTCAATGCCTTGCTTTCTCATTGTGTCAATGGTATCTACAGCTTCA
1 TATATGTAACAACATTAGGCTCAATGCCTTGCTTTCTCATTGTGTCAACAATATCTTCAGCTTCA
* *** * *
70279147 GAAATTGTCCCCTCCTTGCAATGTGCATCAA
66 AAAACCATCCCCTCCTTACAAAGTGCATCAA
70279178 TCAACATATT
Statistics
Matches: 172, Mismatches: 29, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
105 172 1.00
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (105 bp):
TATATGTAACAACATTAGGCTCAATGCCTTGCTTTCTCATTGTGTCAACAATATCTTCAGCTTCA
AAAACCATCCCCTCCTTACAAAGTGCATCAACCAATATAC
Found at i:70281489 original size:10 final size:10
Alignment explanation
Indices: 70281474--70281503 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
70281464 TATGAAAATG
70281474 CAAATATAGA
1 CAAATATAGA
70281484 CAAATATAGA
1 CAAATATAGA
*
70281494 CAAATTTAGA
1 CAAATATAGA
70281504 GTTTATAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.57, C:0.10, G:0.10, T:0.23
Consensus pattern (10 bp):
CAAATATAGA
Found at i:70286735 original size:65 final size:66
Alignment explanation
Indices: 70286640--70286797 Score: 176
Period size: 65 Copynumber: 2.4 Consensus size: 66
70286630 TTGACTATGT
* * *
70286640 AGGTTGGGCATATGGATTAGCACTTAGCTGTACAGGTTG-GCCATATGCATTAGCAT-TGGCTGA
1 AGGTTGGCCATATGGATTAGCATTTGGCTGTACAGGTTGAGCC-TATGCATTAGCATGTGGCTGA
70286703 GA
65 GA
* * * * * * * *
70286705 AGTTTGGCCGTGTGGATTAGCATTTGGCTGTGCAGTTTGAGCCTATGGATTAGCATGTTGCTGTG
1 AGGTTGGCCATATGGATTAGCATTTGGCTGTACAGGTTGAGCCTATGCATTAGCATGTGGCTGAG
*
70286770 C
66 A
*
70286771 AGGTTGGTCATATGGATTAGCATTTGG
1 AGGTTGGCCATATGGATTAGCATTTGG
70286798 TCGTGCAGGT
Statistics
Matches: 75, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
65 43 0.57
66 32 0.43
ACGTcount: A:0.20, C:0.14, G:0.32, T:0.34
Consensus pattern (66 bp):
AGGTTGGCCATATGGATTAGCATTTGGCTGTACAGGTTGAGCCTATGCATTAGCATGTGGCTGAG
A
Done.