Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 212 of 344
Found at i:70286804 original size:33 final size:33
Alignment explanation
Indices: 70286640--70286808 Score: 175
Period size: 33 Copynumber: 5.2 Consensus size: 33
70286630 TTGACTATGT
* * * *
70286640 AGGTTGGGCATATGGATTAGCACTTAGCTGTAC
1 AGGTTGGCCATATGGATTAGCATTTGGCTGTGC
* * *
70286673 AGGTTGGCCATATGCATTAGCA-TTGGCTGAGA
1 AGGTTGGCCATATGGATTAGCATTTGGCTGTGC
* * *
70286705 AGTTTGGCCGTGTGGATTAGCATTTGGCTGTGC
1 AGGTTGGCCATATGGATTAGCATTTGGCTGTGC
*
70286738 AGTTTGAGCC-TATGGATTAGCATGTT-GCTGTGC
1 AGGTTG-GCCATATGGATTAGCAT-TTGGCTGTGC
*
70286771 AGGTTGGTCATATGGATTAGCATTTGG-TCGTGC
1 AGGTTGGCCATATGGATTAGCATTTGGCT-GTGC
70286804 AGGTT
1 AGGTT
70286809 CTGTACGGAC
Statistics
Matches: 115, Mismatches: 15, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
32 29 0.25
33 81 0.70
34 5 0.04
ACGTcount: A:0.20, C:0.14, G:0.33, T:0.34
Consensus pattern (33 bp):
AGGTTGGCCATATGGATTAGCATTTGGCTGTGC
Found at i:70288921 original size:22 final size:21
Alignment explanation
Indices: 70288895--70288938 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
70288885 CCAGCCAATT
70288895 GCTTC-AGCTTTTAGCAAGTGAA
1 GCTTCGAGCTTTT-GCAA-TGAA
70288917 GCTTCGAGCTTTTGCAATGAA
1 GCTTCGAGCTTTTGCAATGAA
70288938 G
1 G
70288939 TGTTGAGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.24
22 9 0.43
23 7 0.33
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (21 bp):
GCTTCGAGCTTTTGCAATGAA
Found at i:70290004 original size:105 final size:103
Alignment explanation
Indices: 70289842--70290296 Score: 353
Period size: 105 Copynumber: 4.3 Consensus size: 103
70289832 AGTTCTGTAT
* * * * * * *
70289842 GTGACAAAATTAGGCTCAATGCATTGTTTTCTCATTGTGTCGACAATA-CATTCAGCTTCAGAAA
1 GTGACAACATCAGGCTCAATGCCTTGCTTTCTCATTGTGGCAACAATATC-TACAGCTTCAGAAA
* * ** *
70289906 CCATCCCATTCTTGCAAAGTGCATTGATAAATATATTATAG
65 CCATCCC-TCCTTGCAAAGCGCATCAAT-AATATATTATAC
* ** * * *
70289947 GTGACAACATCAGGCTCCACACCTTGCTTTCTCATTGTGGCAATAGTATCTACAGCTTTAGAAA-
1 GTGACAACATCAGGCTCAATGCCTTGCTTTCTCATTGTGGCAACAATATCTACAGCTTCAGAAAC
* * *
70290011 TACTCCTCTCCTTGCAATA-CACATCAACCAATATATTATAC
66 CA-TCC-CTCCTTGCAA-AGCGCATCAA-TAATATATTATAC
* * * * * *
70290052 GTCACAACATCGGGCTCAATGCCTTCCTTTCTCATTGTGTCAACAATATCTTCGGCTTCAGAAAC
1 GTGACAACATCAGGCTCAATGCCTTGCTTTCTCATTGTGGCAACAATATCTACAGCTTCAGAAAC
* * * *
70290117 CCTCCCCTCCTTGCAATGCGCATCAACTAATGTACTATAC
66 CAT-CCCTCCTTGCAAAGCGCATCAA-TAATATATTATAC
* * * * *
70290157 GTGACAACATCAGGCTCAATGCCTTGCTTTCTCATTGTGTG-AACTACATCCAAAGATTCAGAAA
1 GTGACAACATCAGGCTCAATGCCTTGCTTTCTCATTGTG-GCAACAATATCTACAGCTTCAGAAA
** * * * * *
70290221 TTAGCCTCTCCTTGCACCA-TGCATCAACCAATATATTATAG
65 CCATCC-CTCCTTGCA-AAGCGCATCAA-TAATATATTATAC
**
70290262 GTGACAACATCAGGCTTGATGCCTTGCTTTCTCAT
1 GTGACAACATCAGGCTCAATGCCTTGCTTTCTCAT
70290297 CGCATTAAAG
Statistics
Matches: 275, Mismatches: 64, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
104 3 0.01
105 267 0.97
106 5 0.02
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (103 bp):
GTGACAACATCAGGCTCAATGCCTTGCTTTCTCATTGTGGCAACAATATCTACAGCTTCAGAAAC
CATCCCTCCTTGCAAAGCGCATCAATAATATATTATAC
Found at i:70290231 original size:210 final size:210
Alignment explanation
Indices: 70289853--70290296 Score: 511
Period size: 210 Copynumber: 2.1 Consensus size: 210
70289843 TGACAAAATT
* * * *
70289853 AGGCTCAATGCATTGTTTTCTCATTGTGTCGACAATACATTCAGCTTCAGAAACCATCCCATTCT
1 AGGCTCAATGCCTTGCTTTCTCATTGTGTCAACAATACATTCAGCTTCAGAAACCATCCCATCCT
* ** * * *
70289918 TGCAAAGTGCATTGATAAATATATTATAGGTGACAACATCAGGCTCCACACCTTGCTTTCTCATT
66 TGCAAAGCGCATCAATAAATATACTATACGTGACAACATCAGGCTCAACACCTTGCTTTCTCATT
* * * * * * *
70289983 GTGGCAATAGTATCTACAGCTTTAGAAATACTCCTCTCCTTGCAATACACATCAACCAATATATT
131 GTGGCAATAGCATCCAAAGATTCAGAAATACGCCTCTCCTTGCAACACACATCAACCAATATATT
70290048 ATACGTCACAACATC
196 ATACGTCACAACATC
* * * * *
70290063 GGGCTCAATGCCTTCCTTTCTCATTGTGTCAACAATATC-TTCGGCTTCAGAAACCCTCCCCTCC
1 AGGCTCAATGCCTTGCTTTCTCATTGTGTCAACAATA-CATTCAGCTTCAGAAACCATCCCATCC
* * **
70290127 TTGCAATGCGCATCAACT-AATGTACTATACGTGACAACATCAGGCTCAATGCCTTGCTTTCTCA
65 TTGCAAAGCGCATCAA-TAAATATACTATACGTGACAACATCAGGCTCAACACCTTGCTTTCTCA
* **
70290191 TTGTGTG-AACTA-CATCCAAAGATTCAGAAATTA-GCCTCTCCTTGCACCATGCATCAACCAAT
129 TTGTG-GCAA-TAGCATCCAAAGATTCAGAAA-TACGCCTCTCCTTGCAACACACATCAACCAAT
* *
70290253 ATATTATAGGTGACAACATC
191 ATATTATACGTCACAACATC
**
70290273 AGGCTTGATGCCTTGCTTTCTCAT
1 AGGCTCAATGCCTTGCTTTCTCAT
70290297 CGCATTAAAG
Statistics
Matches: 194, Mismatches: 35, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
210 187 0.96
211 7 0.04
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (210 bp):
AGGCTCAATGCCTTGCTTTCTCATTGTGTCAACAATACATTCAGCTTCAGAAACCATCCCATCCT
TGCAAAGCGCATCAATAAATATACTATACGTGACAACATCAGGCTCAACACCTTGCTTTCTCATT
GTGGCAATAGCATCCAAAGATTCAGAAATACGCCTCTCCTTGCAACACACATCAACCAATATATT
ATACGTCACAACATC
Found at i:70290368 original size:210 final size:210
Alignment explanation
Indices: 70289884--70290380 Score: 490
Period size: 210 Copynumber: 2.4 Consensus size: 210
70289874 CATTGTGTCG
* * * * ** * * *
70289884 ACAATA-CATTCAGCTTCAGAAACCATCCCATTCTTGCAAAGTGCATTGATAAATATATTATAGG
1 ACAATATC-TTCAGCTTCAGAAACCCTCCCCTCCTTGCAATGTGCATCAATCAATATGTTATACG
* * * * * *
70289948 TGACAACATCAGGCTCCACACCTTGCTTTCTCATTGTGGCAATAGTATCTACAGCTTTAGAAATA
65 TGACAACATCAGGCTCAACACCTTGCTTTCTCATTGTGGCAATAGCATCCAAAGATTCAGAAATA
* * *
70290013 CTCCTCTCCTTGCAATACACATCAACCAATATATTATACGTCACAACATCGGGCTCAATGCCTTC
130 CGCCTCTCCTTGCAACACACATCAACCAATATATTATACGTCACAACATCAGGCTCAATGCCTTC
* **
70290078 CTTTCTCATTGTGTCA
195 CTTTCTCATCGCATCA
* * *
70290094 ACAATATCTTCGGCTTCAGAAACCCTCCCCTCCTTGCAATGCGCATCAA-CTA-ATGTACTATAC
1 ACAATATCTTCAGCTTCAGAAACCCTCCCCTCCTTGCAATGTGCATCAATCAATATGT--TATAC
**
70290157 GTGACAACATCAGGCTCAATGCCTTGCTTTCTCATTGTGTG-AACTA-CATCCAAAGATTCAGAA
64 GTGACAACATCAGGCTCAACACCTTGCTTTCTCATTGTG-GCAA-TAGCATCCAAAGATTCAGAA
* ** * * **
70290220 ATTA-GCCTCTCCTTGCACCATGCATCAACCAATATATTATAGGTGACAACATCAGGCTTGATGC
127 A-TACGCCTCTCCTTGCAACACACATCAACCAATATATTATACGTCACAACATCAGGCTCAATGC
* *
70290284 CTTGCTTTCTCATCGCATTA
191 CTTCCTTTCTCATCGCATCA
***
70290304 A-AGATA-CTTACAGCTTCCA-AAATTGTCCCCTCCTTGCAATGTGCATCAATCAATATGTTATA
1 ACA-ATATCTT-CAGCTT-CAGAAACCCTCCCCTCCTTGCAATGTGCATCAATCAATATGTTATA
* *
70290366 CGTGAAAATATCAGG
63 CGTGACAACATCAGG
70290381 AGAAACATTG
Statistics
Matches: 233, Mismatches: 43, Indels: 22
0.78 0.14 0.07
Matches are distributed among these distances:
208 3 0.01
209 5 0.02
210 211 0.91
211 10 0.04
212 4 0.02
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.30
Consensus pattern (210 bp):
ACAATATCTTCAGCTTCAGAAACCCTCCCCTCCTTGCAATGTGCATCAATCAATATGTTATACGT
GACAACATCAGGCTCAACACCTTGCTTTCTCATTGTGGCAATAGCATCCAAAGATTCAGAAATAC
GCCTCTCCTTGCAACACACATCAACCAATATATTATACGTCACAACATCAGGCTCAATGCCTTCC
TTTCTCATCGCATCA
Found at i:70291251 original size:342 final size:342
Alignment explanation
Indices: 70290626--70291310 Score: 1147
Period size: 342 Copynumber: 2.0 Consensus size: 342
70290616 CTTAGAAACT
* * * *
70290626 TAACAGCTCGACCAGTGTTCCCAGTCTTACACAACCCATTAAGTACTGTATTGTAAGCAACTGAA
1 TAACAGCTCGACCAGTGTTACCAGACTTACACAACCCATTAAGTACTGTATTGCAAGCAAATGAA
* * * * *
70290691 TCAGGTCGACACCCTTTTTTGATCATTTCATCAAACAAACTTGCAGCCTGAGAAACCTTGTTTTG
66 TCAGGTCGACACCCTTTTTCGATCATTTCATAAAACAAACTTACAGCCTGAGAAACCCTGCTTTG
70290756 ATTACAAAGTCCATTAATCAAAGTGGACAAAGTTACAACATCAGGTTCAAAACCTAACTTGAGCA
131 ATTACAAAGTCCATTAATCAAAGTGGACAAAGTTACAACATCAGGTTCAAAACCTAACTTGAGCA
*
70290821 TTTTCCCCAAAACAGAAAACCCAAAATCAACTTTACCTAACTGACAAAAGCAATTAATCAAAATG
196 TTTTCCCCAAAACAGAAAACCCAAAATCAACTTTACCTAAATGACAAAAGCAATTAATCAAAATG
* * * * * *
70290886 TTGAAAGAATGAGCATCATGTGAAACTCCCCATAGTTCCATCTGGCTGCCCAGAGAAACAGCAAG
261 GTGAAAGAATAAGCATCATGTGAAACTCCCCATAATTCCATCTGGCTACCCAGAAAAACAACAAG
70290951 CGCATAATGTTTCATTC
326 CGCATAATGTTTCATTC
*
70290968 TAACAGCTCGACCAGTGTTACCAGACTTGCACAACCCATTAAGTACTGTATTGCAAGCAAATGAA
1 TAACAGCTCGACCAGTGTTACCAGACTTACACAACCCATTAAGTACTGTATTGCAAGCAAATGAA
*
70291033 TCAGGTCGATACCCTTTTTCGATCATTTCATAAAACAAA-TTCACAGCCTGAGAAACCCTGCTTT
66 TCAGGTCGACACCCTTTTTCGATCATTTCATAAAACAAACTT-ACAGCCTGAGAAACCCTGCTTT
* *
70291097 GATTACAAAGTCCATTAATCAAGGTGGACAAAGTTACAACATTAGGTTCAAAACCTAACTTGAGC
130 GATTACAAAGTCCATTAATCAAAGTGGACAAAGTTACAACATCAGGTTCAAAACCTAACTTGAGC
*
70291162 ATTTTCCCCAAAACAGAAAACCCAAAATCAACTTTACCTAAATGACAAAAGCAATTAATCAAGAT
195 ATTTTCCCCAAAACAGAAAACCCAAAATCAACTTTACCTAAATGACAAAAGCAATTAATCAAAAT
* *
70291227 GGTGAAAGAATAAGCATTATGTGAAACTCCCCGTAATTCCATCTGGCTACCCAGAAAAACAACAA
260 GGTGAAAGAATAAGCATCATGTGAAACTCCCCATAATTCCATCTGGCTACCCAGAAAAACAACAA
70291292 GCGCATAATGTTTCATTC
325 GCGCATAATGTTTCATTC
70291310 T
1 T
70291311 GACAATGGCC
Statistics
Matches: 319, Mismatches: 23, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
341 2 0.01
342 317 0.99
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (342 bp):
TAACAGCTCGACCAGTGTTACCAGACTTACACAACCCATTAAGTACTGTATTGCAAGCAAATGAA
TCAGGTCGACACCCTTTTTCGATCATTTCATAAAACAAACTTACAGCCTGAGAAACCCTGCTTTG
ATTACAAAGTCCATTAATCAAAGTGGACAAAGTTACAACATCAGGTTCAAAACCTAACTTGAGCA
TTTTCCCCAAAACAGAAAACCCAAAATCAACTTTACCTAAATGACAAAAGCAATTAATCAAAATG
GTGAAAGAATAAGCATCATGTGAAACTCCCCATAATTCCATCTGGCTACCCAGAAAAACAACAAG
CGCATAATGTTTCATTC
Found at i:70294278 original size:12 final size:13
Alignment explanation
Indices: 70294263--70294291 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
70294253 TAAGTAATAA
70294263 AATATTATTTTT-
1 AATATTATTTTTG
70294275 AATATTATTTTTG
1 AATATTATTTTTG
70294288 AATA
1 AATA
70294292 ATGAAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (13 bp):
AATATTATTTTTG
Found at i:70296975 original size:29 final size:29
Alignment explanation
Indices: 70296933--70296988 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
70296923 TATTCTGATC
70296933 TTCTGATTCGCATGTTAAGCATGCCATAT
1 TTCTGATTCGCATGTTAAGCATGCCATAT
*
70296962 TTCTGATTTGCATGTTAAGCATGCCAT
1 TTCTGATTCGCATGTTAAGCATGCCAT
70296989 TGTGATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (29 bp):
TTCTGATTCGCATGTTAAGCATGCCATAT
Found at i:70297371 original size:21 final size:22
Alignment explanation
Indices: 70297345--70297389 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
70297335 GGGTAGGATA
* *
70297345 TGTTTTTTTAAAAGT-TTGCAT
1 TGTTTTCTGAAAAGTGTTGCAT
70297366 TGTTTTCTGAAAAGTGTTGCAT
1 TGTTTTCTGAAAAGTGTTGCAT
70297388 TG
1 TG
70297390 ACATCGTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.22, C:0.07, G:0.20, T:0.51
Consensus pattern (22 bp):
TGTTTTCTGAAAAGTGTTGCAT
Found at i:70302074 original size:28 final size:28
Alignment explanation
Indices: 70302034--70302089 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
70302024 ATAAAGGGGC
*
70302034 GCTCTTGTGAGCTATGGTGTGTTCGCAA
1 GCTCTTATGAGCTATGGTGTGTTCGCAA
70302062 GCTCTTATGAGCTATGGTGTGTTCGCAA
1 GCTCTTATGAGCTATGGTGTGTTCGCAA
70302090 CATATGCAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.16, C:0.18, G:0.30, T:0.36
Consensus pattern (28 bp):
GCTCTTATGAGCTATGGTGTGTTCGCAA
Found at i:70310895 original size:33 final size:33
Alignment explanation
Indices: 70310856--70311192 Score: 454
Period size: 33 Copynumber: 10.4 Consensus size: 33
70310846 CCCATTCCCA
*
70310856 TGTTCATCCCCATGCCTGCG-CTCATGCCCATAT
1 TGTTCATCCCCATGCCTG-GATTCATGCCCATAT
* *
70310889 TGTTCATCTCCATGCCTGGATTCATGCCCATGT
1 TGTTCATCCCCATGCCTGGATTCATGCCCATAT
70310922 TGTTCATCCCCATGCCTGGATTCATGCCC--A-
1 TGTTCATCCCCATGCCTGGATTCATGCCCATAT
** *
70310952 TGTTCATCCCCATGCCTTTATTCATGTCCATAT
1 TGTTCATCCCCATGCCTGGATTCATGCCCATAT
** **
70310985 TACTCATCCCCATGCCTTTATTCATGCCCATAT
1 TGTTCATCCCCATGCCTGGATTCATGCCCATAT
**
70311018 TACTCATCCCCATGCCTGGATTCATGCCCATAT
1 TGTTCATCCCCATGCCTGGATTCATGCCCATAT
*
70311051 TGCTCATCCCCATGCCTGGATTCATGCCCATAT
1 TGTTCATCCCCATGCCTGGATTCATGCCCATAT
* *
70311084 TGCTCATCCCCATGCCTGGATTTATGCCCATAT
1 TGTTCATCCCCATGCCTGGATTCATGCCCATAT
* *
70311117 TGCTCATCCCCATGCCTGGATTCATGCCCATGT
1 TGTTCATCCCCATGCCTGGATTCATGCCCATAT
*
70311150 TGTTCATCCCCATGCCTGGGTTCATGCCC--A-
1 TGTTCATCCCCATGCCTGGATTCATGCCCATAT
70311180 TGTTCATCCCCAT
1 TGTTCATCCCCAT
70311193 TCCCATGCCC
Statistics
Matches: 280, Mismatches: 20, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
30 39 0.14
32 2 0.01
33 239 0.85
ACGTcount: A:0.17, C:0.35, G:0.14, T:0.33
Consensus pattern (33 bp):
TGTTCATCCCCATGCCTGGATTCATGCCCATAT
Found at i:70310997 original size:15 final size:15
Alignment explanation
Indices: 70310979--70311030 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
70310969 TTATTCATGT
70310979 CCATATTACTCATCC
1 CCATATTACTCATCC
* * *
70310994 CCATGCCTTTATTCATGC
1 CCAT---ATTACTCATCC
70311012 CCATATTACTCATCC
1 CCATATTACTCATCC
70311027 CCAT
1 CCAT
70311031 GCCTGGATTC
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
15 16 0.57
18 12 0.43
ACGTcount: A:0.23, C:0.38, G:0.04, T:0.35
Consensus pattern (15 bp):
CCATATTACTCATCC
Found at i:70312028 original size:33 final size:33
Alignment explanation
Indices: 70311984--70312607 Score: 310
Period size: 33 Copynumber: 19.2 Consensus size: 33
70311974 AGACTGTGTG
* **
70311984 GGTTGGGCATATGGATTAGCACTTGGCTGAACA
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
* *
70312017 GGTTGGCCATATGGATTAGCA-TTAGGCTGTGTA
1 GGTTGGCCATATGGATTAGCACTT-GGCTGCGCA
* ** *
70312050 GGCTGGCTGTATGGATTAGCA-TTCGGCTGAGCA
1 GGTTGGCCATATGGATTAGCACTT-GGCTGCGCA
*** *
70312083 GGTTGGTTGTATGGATTAGCACTTGGCTGAGCA
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
** **
70312116 GGTTGGCCATATGGATTAGCA-TGTACCTGTACA
1 GGTTGGCCATATGGATTAGCACT-TGGCTGCGCA
** * ** * *
70312149 GGTTGGCTGTATGGATTAGCATTTGTTTGTGCT
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
* * * * * *
70312182 GGTTGACTATACGGATTAGCATTTGGTTGTGCA
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
* * * * * * * **
70312215 GATTGACCATAAGGATCAGCATTTGGTTGTGTT
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
* *
70312248 GGCTGGCCATAGGGATTAGCAC-T---T--G-A
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
* * * * *
70312274 --CTGGCCATATGGGTTTGCAC-TGGGTGGCACA
1 GGTTGGCCATATGGATTAGCACTTGGCT-GCGCA
** *
70312305 GGCAGGCCATA-GAGATTAGCACTTGGCTGC-CC
1 GGTTGGCCATATG-GATTAGCACTTGGCTGCGCA
* ** * * *
70312337 GTTTTGGCTGTATGGGTTAGCACTGGGCTGCACA
1 G-GTTGGCCATATGGATTAGCACTTGGCTGCGCA
* * *
70312371 GGCTGGCCATAGGGATTAGCACTTGAG-TGCCCA
1 GGTTGGCCATATGGATTAGCACTTG-GCTGCGCA
** * * * *
70312404 TTTTGGCCATATGGGTTAGTACTGGGCTGCACA
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
* * * *
70312437 GGCTGGCCATAGGGATTAGCACTTGGTTGCCCA
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
** *
70312470 TTTTGGCCATATGGATTAGCA-TTGGGCTGCTCA
1 GGTTGGCCATATGGATTAGCACTT-GGCTGCGCA
* * * *
70312503 GGCTGGCCATAGGGATTAGCACTTGGTTGCCCA
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
** * *
70312536 TTTTGGCCATATGGATTAGCACTGGGCTGAGCA
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
* * * *
70312569 AGCTGGCCATATGGATTCGCACTTGGCTGCGCG
1 GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
70312602 GGTTGG
1 GGTTGG
70312608 TACATATTAG
Statistics
Matches: 454, Mismatches: 115, Indels: 44
0.74 0.19 0.07
Matches are distributed among these distances:
24 18 0.04
27 2 0.00
29 1 0.00
31 1 0.00
32 10 0.02
33 409 0.90
34 13 0.03
ACGTcount: A:0.19, C:0.18, G:0.33, T:0.30
Consensus pattern (33 bp):
GGTTGGCCATATGGATTAGCACTTGGCTGCGCA
Found at i:70312388 original size:66 final size:66
Alignment explanation
Indices: 70312275--70312598 Score: 456
Period size: 66 Copynumber: 4.9 Consensus size: 66
70312265 AGCACTTGAC
* * * *
70312275 TGGCCATATGGGTTTGCACTGGG-TGGCACAGGCAGGCCATAGAGATTAGCACTTGGCTGCCCGT
1 TGGCCATATGGGTTAGCACTGGGCT-GCACAGGCTGGCCATAGGGATTAGCACTTGGCTGCCCAT
70312339 TT
65 TT
**
70312341 TGGCTGTATGGGTTAGCACTGGGCTGCACAGGCTGGCCATAGGGATTAGCACTTGAG-TGCCCAT
1 TGGCCATATGGGTTAGCACTGGGCTGCACAGGCTGGCCATAGGGATTAGCACTTG-GCTGCCCAT
70312405 TT
65 TT
* *
70312407 TGGCCATATGGGTTAGTACTGGGCTGCACAGGCTGGCCATAGGGATTAGCACTTGGTTGCCCATT
1 TGGCCATATGGGTTAGCACTGGGCTGCACAGGCTGGCCATAGGGATTAGCACTTGGCTGCCCATT
70312472 T
66 T
* * * *
70312473 TGGCCATATGGATTAGCATTGGGCTGCTCAGGCTGGCCATAGGGATTAGCACTTGGTTGCCCATT
1 TGGCCATATGGGTTAGCACTGGGCTGCACAGGCTGGCCATAGGGATTAGCACTTGGCTGCCCATT
70312538 T
66 T
* * * *
70312539 TGGCCATATGGATTAGCACTGGGCTG-AGCAAGCTGGCCATATGGATTCGCACTTGGCTGC
1 TGGCCATATGGGTTAGCACTGGGCTGCA-CAGGCTGGCCATAGGGATTAGCACTTGGCTGC
70312599 GCGGGTTGGT
Statistics
Matches: 235, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
65 1 0.00
66 232 0.99
67 2 0.01
ACGTcount: A:0.19, C:0.22, G:0.32, T:0.27
Consensus pattern (66 bp):
TGGCCATATGGGTTAGCACTGGGCTGCACAGGCTGGCCATAGGGATTAGCACTTGGCTGCCCATT
T
Found at i:70318779 original size:2 final size:2
Alignment explanation
Indices: 70318772--70318809 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
70318762 GAAAAATGAA
* *
70318772 AG AG AG AG AG AG AG AG AG AG AC AG AG AG AT AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
70318810 GAGGAGTGGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.45, T:0.03
Consensus pattern (2 bp):
AG
Found at i:70318995 original size:18 final size:17
Alignment explanation
Indices: 70318974--70319007 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
70318964 CGGTTTTGTT
70318974 TCTTTTTATTATTTTTAC
1 TCTTTTT-TTATTTTTAC
*
70318992 TCTTTTTTTTTTTTTA
1 TCTTTTTTTATTTTTA
70319008 GATTTAGAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (17 bp):
TCTTTTTTTATTTTTAC
Found at i:70331921 original size:26 final size:26
Alignment explanation
Indices: 70331882--70331963 Score: 157
Period size: 26 Copynumber: 3.2 Consensus size: 26
70331872 AAAAGATTGG
70331882 TTAA-TAAAATAATTCATGGATTACA
1 TTAATTAAAATAATTCATGGATTACA
70331907 TTAATTAAAATAATTCATGGATTACA
1 TTAATTAAAATAATTCATGGATTACA
70331933 TTAATTAAAATAATTCATGGATTACA
1 TTAATTAAAATAATTCATGGATTACA
70331959 TTAAT
1 TTAAT
70331964 ATACTTTGTA
Statistics
Matches: 56, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
25 4 0.07
26 52 0.93
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.39
Consensus pattern (26 bp):
TTAATTAAAATAATTCATGGATTACA
Found at i:70337414 original size:31 final size:31
Alignment explanation
Indices: 70337378--70337440 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
70337368 AAAGATTAAA
70337378 ATTATTAGTAATTATCGTCTTTCTATTATTT
1 ATTATTAGTAATTATCGTCTTTCTATTATTT
* * *
70337409 ATTATTAGTAATTATTGTTTTTTTATTATTT
1 ATTATTAGTAATTATCGTCTTTCTATTATTT
70337440 A
1 A
70337441 ACTGATAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.05, G:0.06, T:0.62
Consensus pattern (31 bp):
ATTATTAGTAATTATCGTCTTTCTATTATTT
Found at i:70338125 original size:15 final size:17
Alignment explanation
Indices: 70338094--70338125 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
70338084 ATAATTATAT
70338094 AAATTATAATCATTTTA
1 AAATTATAATCATTTTA
70338111 AAATT-TAAT-ATTTTA
1 AAATTATAATCATTTTA
70338126 TTCATGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 4 0.27
17 5 0.33
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
AAATTATAATCATTTTA
Found at i:70341874 original size:11 final size:11
Alignment explanation
Indices: 70341860--70341900 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
70341850 TATTTTCTCC
70341860 CTATTTTGCTA
1 CTATTTTGCTA
*
70341871 CTATTTTACTA
1 CTATTTTGCTA
* *
70341882 TTATGTTGCTA
1 CTATTTTGCTA
70341893 CTATTTTG
1 CTATTTTG
70341901 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:70342156 original size:12 final size:12
Alignment explanation
Indices: 70342126--70342158 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
70342116 TATATATTTT
70342126 AAAATT-ATATA
1 AAAATTAATATA
70342137 AAAA-TAATATA
1 AAAATTAATATA
70342148 AAAATTAATAT
1 AAAATTAATAT
70342159 GGGCAGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:70348342 original size:18 final size:18
Alignment explanation
Indices: 70348323--70348397 Score: 96
Period size: 18 Copynumber: 4.2 Consensus size: 18
70348313 CCCAACTACT
*
70348323 GTATACGTGAATAGTACT
1 GTATACGTGAATAGTACC
*
70348341 GTATACGTAAATAGTACC
1 GTATACGTGAATAGTACC
* * *
70348359 ATATAAGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
70348377 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
70348395 GTA
1 GTA
70348398 AATGGTCGTA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 49 1.00
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:70354027 original size:55 final size:55
Alignment explanation
Indices: 70353966--70354142 Score: 228
Period size: 55 Copynumber: 3.2 Consensus size: 55
70353956 ATATTAAGTC
* * * *
70353966 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
70354021 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * * *
70354076 CGCACACTTAGTGCTACATATTCGATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
70354132 CGCACACTTAG
1 CGCACACTTAG
70354143 CGCCAATCTC
Statistics
Matches: 107, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
55 91 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:70354031 original size:28 final size:27
Alignment explanation
Indices: 70353966--70354117 Score: 214
Period size: 27 Copynumber: 5.6 Consensus size: 27
70353956 ATATTAAGTC
* *
70353966 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
70353993 CGCACATTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
70354021 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
70354048 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* * *
70354076 CGCACACTTAGTGCTACATATTCGATT
1 CGCACACTTAGTGCTACATAATCAACT
70354103 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70354118 GCACAATTTA
Statistics
Matches: 115, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
27 64 0.56
28 51 0.44
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:70359132 original size:40 final size:40
Alignment explanation
Indices: 70358865--70359132 Score: 455
Period size: 40 Copynumber: 6.7 Consensus size: 40
70358855 CAAACACATG
* * * *
70358865 TGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
* *
70358905 TGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
* *
70358945 TGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
*
70358985 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
70359025 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
70359065 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
70359105 TGCCTTCGGGTCTTAGCCCGGATATATT
1 TGCCTTCGGGTCTTAGCCCGGATATATT
70359133 CCAATGCTCA
Statistics
Matches: 216, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 216 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.31
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAAT
Found at i:70363498 original size:40 final size:40
Alignment explanation
Indices: 70363415--70363677 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
70363405 TTGAATGCTG
* * * * * *
70363415 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
70363455 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
70363495 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
70363535 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
70363575 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
70363615 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
70363654 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
70363678 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:70363697 original size:79 final size:80
Alignment explanation
Indices: 70363454--70363712 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
70363444 AAGTGAATAT
* * * * * *
70363454 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
70363518 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
70363534 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
70363599 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
70363614 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
70363678 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
70363693 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
70363713 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:70371444 original size:40 final size:40
Alignment explanation
Indices: 70371361--70371623 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
70371351 TTGAATGCTG
* * * * * *
70371361 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
70371401 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
70371441 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
70371481 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
70371521 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
70371561 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
70371600 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
70371624 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:70371643 original size:79 final size:80
Alignment explanation
Indices: 70371400--70371658 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
70371390 AAGTGAATAT
* * * * * *
70371400 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
70371464 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
70371480 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
70371545 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
70371560 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
70371624 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
70371639 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
70371659 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:70376986 original size:55 final size:55
Alignment explanation
Indices: 70376925--70377101 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
70376915 ATATTAAGTC
* * *
70376925 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
70376980 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
70377035 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
70377091 CGCACACTTAG
1 CGCACACTTAG
70377102 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:70376989 original size:28 final size:27
Alignment explanation
Indices: 70376925--70377076 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
70376915 ATATTAAGTC
* *
70376925 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
70376952 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
70376980 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
70377007 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
70377035 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
70377062 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70377077 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:70379259 original size:51 final size:51
Alignment explanation
Indices: 70379178--70379277 Score: 137
Period size: 51 Copynumber: 2.0 Consensus size: 51
70379168 ATATATGTGG
* *
70379178 CATCTGAGCTCGTTGAGTGGCCCGAGTTCATAATGGATGCGATACATGTAA
1 CATCCGAGCTCGTTGAGAGGCCCGAGTTCATAATGGATGCGATACATGTAA
* * * * *
70379229 CATCCGAGCTTGTTGAGAGGTCCGAGTTCATTATGGATGTGTTACATGT
1 CATCCGAGCTCGTTGAGAGGCCCGAGTTCATAATGGATGCGATACATGT
70379278 TATAAGGTAG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (51 bp):
CATCCGAGCTCGTTGAGAGGCCCGAGTTCATAATGGATGCGATACATGTAA
Found at i:70382888 original size:15 final size:15
Alignment explanation
Indices: 70382861--70382903 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
70382851 TTCATTATGA
*
70382861 TATTGTATCTTGGATT
1 TATT-TATCTTGGACT
*
70382877 TATTTGTCTTGGACT
1 TATTTATCTTGGACT
*
70382892 TCTTTATCTTGG
1 TATTTATCTTGG
70382904 TTTTCATGTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 19 0.83
16 4 0.17
ACGTcount: A:0.14, C:0.12, G:0.19, T:0.56
Consensus pattern (15 bp):
TATTTATCTTGGACT
Found at i:70385695 original size:47 final size:47
Alignment explanation
Indices: 70385643--70385841 Score: 170
Period size: 47 Copynumber: 4.1 Consensus size: 47
70385633 TGGTTGGACC
* * *
70385643 ATGGCAACATGTTATATGTGATTTCCGTATAAGACCATAGCTGGGCT
1 ATGGCATCATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGAT
* *
70385690 ATGGCATCGGTGTGATGTGATCATGTGATTTCCGTATAAGGCCATATCTGGGAT
1 ATGGCATC------ATGTGAT-ATGTGATTTCCGTATAAGACCATAGCTGGGAT
* * * * *
70385744 ATGGCATCGGTATGATATGTG-CTTCTGTATAAGACCATATCTGGGAT
1 ATGGCATC-ATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGAT
* * * *
70385791 ATGGCATCAGTGTGATATGTGA--TCTGTGTAAGACCATGGCTGGGTT
1 ATGGCATCA-TGTGATATGTGATTTCCGTATAAGACCATAGCTGGGAT
70385837 ATGGC
1 ATGGC
70385842 TTTGGTGTGT
Statistics
Matches: 127, Mismatches: 16, Indels: 19
0.78 0.10 0.12
Matches are distributed among these distances:
46 25 0.20
47 48 0.38
48 5 0.04
49 6 0.05
53 6 0.05
54 37 0.29
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (47 bp):
ATGGCATCATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGAT
Found at i:70385741 original size:54 final size:51
Alignment explanation
Indices: 70385656--70385806 Score: 193
Period size: 54 Copynumber: 3.0 Consensus size: 51
70385646 GCAACATGTT
* *
70385656 ATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGATGTG
1 ATATGTGATTTCCGTATAAGACCATATCTGGGATATGGCATC-GTGTGAT-TG
*
70385709 ATCATGTGATTTCCGTATAAGGCCATATCTGGGATATGGCATCG-GT-A-TG
1 AT-ATGTGATTTCCGTATAAGACCATATCTGGGATATGGCATCGTGTGATTG
* *
70385758 ATATGTG-CTTCTGTATAAGACCATATCTGGGATATGGCATCAGTGTGAT
1 ATATGTGATTTCCGTATAAGACCATATCTGGGATATGGCATC-GTGTGAT
70385807 ATGTGATCTG
Statistics
Matches: 87, Mismatches: 6, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
47 31 0.36
48 6 0.07
49 6 0.07
50 1 0.01
51 1 0.01
52 2 0.02
53 3 0.03
54 37 0.43
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (51 bp):
ATATGTGATTTCCGTATAAGACCATATCTGGGATATGGCATCGTGTGATTG
Found at i:70388693 original size:43 final size:42
Alignment explanation
Indices: 70388625--70388723 Score: 135
Period size: 43 Copynumber: 2.3 Consensus size: 42
70388615 GAAATTCGAG
* * *
70388625 CTCGTTGAGCGGTCCGAGTTGGTGATATATGTGAGAATCTGAA
1 CTCGTTGAGTGGTCCAAGTTCGTGATATATGTG-GAATCTGAA
* * *
70388668 CTTGTTGAGTGGTCCAAGTTCGTGATATATGTGGCATCTGAG
1 CTCGTTGAGTGGTCCAAGTTCGTGATATATGTGGAATCTGAA
70388710 CTCGTTGAGTGGTC
1 CTCGTTGAGTGGTC
70388724 TGAGTTCATT
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 20 0.41
43 29 0.59
ACGTcount: A:0.19, C:0.15, G:0.32, T:0.33
Consensus pattern (42 bp):
CTCGTTGAGTGGTCCAAGTTCGTGATATATGTGGAATCTGAA
Found at i:70388759 original size:43 final size:43
Alignment explanation
Indices: 70388701--70388784 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
70388691 GATATATGTG
*
70388701 GCATCTGAGCTCGTTGAGTGGTCTGAGTTCATTATGCATGCAA
1 GCATCTGAGCTCGTTGAGTGGTCTGAGTTCATAATGCATGCAA
*
70388744 GCATCTGAGCTCGTTGAGTGGTCTGAGTTCATAATGGATGC
1 GCATCTGAGCTCGTTGAGTGGTCTGAGTTCATAATGCATGC
70388785 GATACATGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.32
Consensus pattern (43 bp):
GCATCTGAGCTCGTTGAGTGGTCTGAGTTCATAATGCATGCAA
Found at i:70388810 original size:51 final size:51
Alignment explanation
Indices: 70388745--70388844 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 51
70388735 TGCATGCAAG
* *
70388745 CATCTGAGCTCGTTGAGTGG-TCTGAGTTCATAATGGATGCGATACATGTAA
1 CATCCGAGCTCGTTGAGAGGTTC-GAGTTCATAATGGATGCGATACATGTAA
* * * *
70388796 CATCCGAGCTCGTTGAGAGGTTCGAGTTTATTATGGATGTGTTACATGT
1 CATCCGAGCTCGTTGAGAGGTTCGAGTTCATAATGGATGCGATACATGT
70388845 TATAAGGTAG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 40 0.95
52 2 0.05
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (51 bp):
CATCCGAGCTCGTTGAGAGGTTCGAGTTCATAATGGATGCGATACATGTAA
Found at i:70391264 original size:15 final size:16
Alignment explanation
Indices: 70391233--70391265 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
70391223 GTATGTATAC
70391233 ATGTATATAAAAATAA
1 ATGTATATAAAAATAA
*
70391249 ATGTAT-TAACAATAA
1 ATGTATATAAAAATAA
70391264 AT
1 AT
70391266 ATAATAGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (16 bp):
ATGTATATAAAAATAA
Found at i:70393587 original size:20 final size:20
Alignment explanation
Indices: 70393559--70393606 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
70393549 TTGAGGACAC
70393559 GGGCGTGTCCCAAGCCACAT
1 GGGCGTGTCCCAAGCCACAT
*
70393579 GGTCGTGTCCCAAGCCACAT
1 GGGCGTGTCCCAAGCCACAT
70393599 GGGCGTGT
1 GGGCGTGT
70393607 GTGACCACAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (20 bp):
GGGCGTGTCCCAAGCCACAT
Found at i:70400307 original size:14 final size:14
Alignment explanation
Indices: 70400288--70400317 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
70400278 TTTTTTTATT
70400288 TATAAAAATATACC
1 TATAAAAATATACC
70400302 TATAAAAATATACC
1 TATAAAAATATACC
70400316 TA
1 TA
70400318 AACTATTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (14 bp):
TATAAAAATATACC
Found at i:70404172 original size:42 final size:42
Alignment explanation
Indices: 70404103--70404186 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
70404093 AATGAAGGAA
*
70404103 GAAAACTATCATCTTCGTTTCTTCTTCATCTAATAGTCGATT
1 GAAAACTATCATCTTCGTTTCTTCTTCATCTAATAATCGATT
* * * *
70404145 GAAAGCTATTATCTTTGTTTTTTCTTCATCTAATAATCGATT
1 GAAAACTATCATCTTCGTTTCTTCTTCATCTAATAATCGATT
70404187 AGCCATTGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.26, C:0.18, G:0.10, T:0.46
Consensus pattern (42 bp):
GAAAACTATCATCTTCGTTTCTTCTTCATCTAATAATCGATT
Found at i:70411514 original size:18 final size:20
Alignment explanation
Indices: 70411476--70411515 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
70411466 CAAAAAGAGG
70411476 AATTGAAGTGGATCGAGAAAA
1 AATTGAAGTGGATC-AGAAAA
70411497 AATTGAAGT-GAT-AGAAAA
1 AATTGAAGTGGATCAGAAAA
70411515 A
1 A
70411516 TTACCACCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.37
20 3 0.16
21 9 0.47
ACGTcount: A:0.53, C:0.03, G:0.25, T:0.20
Consensus pattern (20 bp):
AATTGAAGTGGATCAGAAAA
Found at i:70413731 original size:24 final size:24
Alignment explanation
Indices: 70413704--70413754 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
70413694 CATGGAAGAG
70413704 AAGTTAAAATTTTATTTAAGGATT
1 AAGTTAAAATTTTATTTAAGGATT
*
70413728 AAGTTAAAATTTTGTTTAAGGATT
1 AAGTTAAAATTTTATTTAAGGATT
70413752 AAG
1 AAG
70413755 ACACTTTACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.43
Consensus pattern (24 bp):
AAGTTAAAATTTTATTTAAGGATT
Found at i:70415525 original size:41 final size:41
Alignment explanation
Indices: 70415480--70415561 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
70415470 AATGGAGTAA
70415480 GCATAAAAGCTTAGTAAGTTGCATATAAGTAAATATACAAC
1 GCATAAAAGCTTAGTAAGTTGCATATAAGTAAATATACAAC
70415521 GCATAAAAGCTTAGTAAGTTGCATATAAGTAAATATACAAC
1 GCATAAAAGCTTAGTAAGTTGCATATAAGTAAATATACAAC
70415562 AACAATATAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (41 bp):
GCATAAAAGCTTAGTAAGTTGCATATAAGTAAATATACAAC
Found at i:70415917 original size:31 final size:31
Alignment explanation
Indices: 70415881--70415939 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
70415871 AAATTCACAT
* * *
70415881 TTTTGGTAAAATGGCCATTTTGCCCCTAGAC
1 TTTTGGCAAAATGACCATTTTACCCCTAGAC
70415912 TTTTGGCAAAATGACCATTTTACCCCTA
1 TTTTGGCAAAATGACCATTTTACCCCTA
70415940 TGCTCGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (31 bp):
TTTTGGCAAAATGACCATTTTACCCCTAGAC
Found at i:70420446 original size:11 final size:12
Alignment explanation
Indices: 70420418--70420447 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
70420408 AGATTAGAAG
70420418 AGATTTTTATTT
1 AGATTTTTATTT
70420430 AGATTTTTATTT
1 AGATTTTTATTT
70420442 A-ATTTT
1 AGATTTT
70420448 AAAAATTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.28
12 13 0.72
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (12 bp):
AGATTTTTATTT
Found at i:70421260 original size:34 final size:30
Alignment explanation
Indices: 70421222--70421295 Score: 80
Period size: 29 Copynumber: 2.4 Consensus size: 30
70421212 TCATTCCTAA
70421222 CATATCATCATTCATGTAACTGTTTGATTTACAC
1 CATATCATCATT-A-G--ACTGTTTGATTTACAC
* *
70421256 CATATC-TTAATAGACTGTTTGATTTACAC
1 CATATCATCATTAGACTGTTTGATTTACAC
70421285 CATATCA-CATT
1 CATATCATCATT
70421296 TATGGATGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
29 24 0.69
31 1 0.03
32 1 0.03
33 3 0.09
34 6 0.17
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (30 bp):
CATATCATCATTAGACTGTTTGATTTACAC
Found at i:70429262 original size:40 final size:40
Alignment explanation
Indices: 70429207--70429433 Score: 409
Period size: 40 Copynumber: 5.7 Consensus size: 40
70429197 AACATTCGAT
*
70429207 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
70429247 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
70429287 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
70429327 TGTATCCGGGCTAAGACCCGAAGGCAACTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
70429367 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
70429407 TATATCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
70429434 ATGTGTTTGT
Statistics
Matches: 181, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 181 1.00
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.21
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:70449120 original size:40 final size:40
Alignment explanation
Indices: 70449065--70449291 Score: 409
Period size: 40 Copynumber: 5.7 Consensus size: 40
70449055 AACATTCGAT
*
70449065 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
70449105 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
70449145 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
70449185 TGTATCCGGGCTAAGACCCGAAGGCAACTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
70449225 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
70449265 TATATCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
70449292 ATGTGTTTGT
Statistics
Matches: 181, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 181 1.00
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.21
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:70457722 original size:40 final size:40
Alignment explanation
Indices: 70457667--70457893 Score: 409
Period size: 40 Copynumber: 5.7 Consensus size: 40
70457657 AACATTGGAT
*
70457667 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
70457707 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
70457747 TGTATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
70457787 TGTATCCGGGCTAAGACCCGAAGGCAACTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
70457827 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
70457867 TATATCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
70457894 ATGTGTTTGT
Statistics
Matches: 181, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 181 1.00
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:70461848 original size:13 final size:13
Alignment explanation
Indices: 70461830--70461859 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
70461820 AAACTAGATT
*
70461830 TTAACTAAGTAAA
1 TTAACTAAGAAAA
70461843 TTAACTAAGAAAA
1 TTAACTAAGAAAA
70461856 TTAA
1 TTAA
70461860 AAAGATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (13 bp):
TTAACTAAGAAAA
Found at i:70467948 original size:25 final size:25
Alignment explanation
Indices: 70467919--70467966 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
70467909 TTATAATATG
* * *
70467919 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
70467944 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
70467967 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:70468028 original size:20 final size:20
Alignment explanation
Indices: 70468003--70468073 Score: 106
Period size: 20 Copynumber: 3.5 Consensus size: 20
70467993 ATTTTGATAA
70468003 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
70468023 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
70468043 ACATGATATGTATGAAATGC
1 ACATGATATGTATGATATGC
* *
70468063 GCATGAGATGT
1 ACATGATATGT
70468074 TCAAAATGCA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70468083 original size:40 final size:40
Alignment explanation
Indices: 70468003--70468083 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 40
70467993 ATTTTGATAA
* * *
70468003 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGAAATGCACATGACATGTATAAAATGC
* *
70468043 ACATGATATGTATGAAATGCGCATGAGATGT-TCAAAATGC
1 ACATGATATGTATGAAATGCACATGACATGTAT-AAAATGC
70468083 A
1 A
70468084 TTGGGTTTGG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.03
40 34 0.97
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (40 bp):
ACATGATATGTATGAAATGCACATGACATGTATAAAATGC
Found at i:70468247 original size:24 final size:24
Alignment explanation
Indices: 70468119--70468259 Score: 205
Period size: 25 Copynumber: 5.9 Consensus size: 24
70468109 AGGAAGTGCA
*
70468119 AAAGGGCTTATGCCCCAATTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
*
70468142 AAAGGTCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
70468165 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
70468190 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
70468215 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
*
70468239 AAAGGGCTTTTGCCCCAGTTA
1 AAAGGGCTTATGCCCCAGTTA
70468260 CTAAAAGAGG
Statistics
Matches: 109, Mismatches: 7, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
23 42 0.39
24 21 0.19
25 46 0.42
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:70475774 original size:25 final size:25
Alignment explanation
Indices: 70475746--70475793 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
70475736 CTTAAATATG
* * *
70475746 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
70475771 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
70475794 GTTTAGATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:70475855 original size:20 final size:20
Alignment explanation
Indices: 70475830--70475899 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
70475820 GTTTTGATAA
70475830 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
70475850 ACATGACATG-ATGATATGC
1 ACATGATATGTATGATATGC
*
70475869 ACATGATATGTATGAAATGC
1 ACATGATATGTATGATATGC
* *
70475889 GCATGAGATGT
1 ACATGATATGT
70475900 TCATAAATGC
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
19 18 0.41
20 26 0.59
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70476001 original size:24 final size:24
Alignment explanation
Indices: 70475945--70476019 Score: 116
Period size: 23 Copynumber: 3.1 Consensus size: 24
70475935 GAGGAAGTGC
70475945 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATA
*
70475968 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATA
*
70475992 AAAAGGGCTTTTGCCCCAGTTACTA
1 AAAAGGGCTTATGCCCCAGTTA-TA
70476017 AAA
1 AAA
70476020 GAGGCTAGGC
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
23 22 0.47
24 20 0.43
25 5 0.11
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATA
Found at i:70476020 original size:24 final size:23
Alignment explanation
Indices: 70475945--70476025 Score: 117
Period size: 24 Copynumber: 3.4 Consensus size: 23
70475935 GAGGAAGTGC
70475945 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
70475968 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
70475991 AAAAAGGGCTTTTGCCCCAGTTACT
1 -AAAAGGGCTTATGCCCCAGTTA-T
70476016 AAAAGAGGCT
1 AAAAG-GGCT
70476026 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
23 22 0.42
24 25 0.48
25 5 0.10
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:70498712 original size:29 final size:28
Alignment explanation
Indices: 70498625--70498712 Score: 70
Period size: 27 Copynumber: 3.1 Consensus size: 28
70498615 GTGGCTATGA
* * * *
70498625 CACAAATTATCTGTTCTGGTGGCCCTGC
1 CACAAAATATCTATTCTGGTGACACTGC
* * * *
70498653 CGC-ATATATCTGTTCTGGTGGCACTGC
1 CACAAAATATCTATTCTGGTGACACTGC
* *
70498680 CACAAAATATCTATATCTGGTGACTCTGT
1 CACAAAATATCTAT-TCTGGTGACACTGC
70498709 CACA
1 CACA
70498713 TTTTCTGTAT
Statistics
Matches: 48, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
27 23 0.48
28 10 0.21
29 15 0.31
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (28 bp):
CACAAAATATCTATTCTGGTGACACTGC
Found at i:70506501 original size:26 final size:27
Alignment explanation
Indices: 70506435--70506523 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 27
70506425 AGGAAGCGTC
70506435 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
70506463 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
70506490 -TGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
70506518 CTGGTG
1 CTGGTG
70506524 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
26 14 0.26
27 17 0.32
28 17 0.32
29 5 0.09
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:70508996 original size:20 final size:20
Alignment explanation
Indices: 70508971--70509024 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
70508961 ATATATATAC
70508971 TAAATAAAATAATAAAATAA
1 TAAATAAAATAATAAAATAA
*** * *
70508991 TAAATATCTTATTAAAATAT
1 TAAATAAAATAATAAAATAA
70509011 TAAAT-AAATAATAA
1 TAAATAAAATAATAA
70509025 TTATCTAATT
Statistics
Matches: 25, Mismatches: 9, Indels: 1
0.71 0.26 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAATAAAATAATAAAATAA
Found at i:70509318 original size:30 final size:31
Alignment explanation
Indices: 70509250--70509308 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
70509240 TACCCTTAAA
* * *
70509250 ATATTTGCACTATTAGTCCTTCAAATTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTTC
70509281 ATATTTACACT-TTAATCCCTCAAATTTT
1 ATATTTACACTATTAATCCCTCAAATTTT
70509309 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.29, C:0.20, G:0.03, T:0.47
Consensus pattern (31 bp):
ATATTTACACTATTAATCCCTCAAATTTTTC
Found at i:70509565 original size:26 final size:25
Alignment explanation
Indices: 70509504--70509571 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
70509494 CATGCTCGAA
* *
70509504 TTTT-TGATTTTGGTGAATATTTTG
1 TTTTATGATGTTGATGAATATTTTG
* *
70509528 TGTTATGTTGTTGATGAATATTTGTG
1 TTTTATGATGTTGATGAATATTT-TG
70509554 TTTTATGATGTTTGATGA
1 TTTTATGATG-TTGATGA
70509572 TGAAATATCA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
24 3 0.09
25 15 0.43
26 10 0.29
27 7 0.20
ACGTcount: A:0.19, C:0.00, G:0.24, T:0.57
Consensus pattern (25 bp):
TTTTATGATGTTGATGAATATTTTG
Found at i:70528553 original size:27 final size:27
Alignment explanation
Indices: 70528515--70528572 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
70528505 TATCTGAGTG
70528515 GGCTAAGGTTCACACCGATTGTGTAAA
1 GGCTAAGGTTCACACCGATTGTGTAAA
70528542 GGCTAAGGTTCACACCGATTGTGTAAA
1 GGCTAAGGTTCACACCGATTGTGTAAA
70528569 GGCT
1 GGCT
70528573 TAGGCTTAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (27 bp):
GGCTAAGGTTCACACCGATTGTGTAAA
Found at i:70529236 original size:93 final size:92
Alignment explanation
Indices: 70529077--70529256 Score: 342
Period size: 93 Copynumber: 1.9 Consensus size: 92
70529067 CCTTTTAAGA
70529077 TATGTGGCATGTAATAGGGGTATCTTGTATATATTATAATTATTTACTCCAAATGGTATGCTTAT
1 TATGTGGCATGTAATAGGGGTATCTTGTATATATTATAATTATTTACTCCAAATGGTATGCTTAT
70529142 GCTAGTGTGATGGTTATACGTTTAAGGT
66 GCTAGTGTGATGGTTATA-GTTTAAGGT
70529170 TATGTGGCATGTAATAGGGGTATCTTGTATATATTATAATTATTTACTCCAAATGGTATGCTTAT
1 TATGTGGCATGTAATAGGGGTATCTTGTATATATTATAATTATTTACTCCAAATGGTATGCTTAT
*
70529235 GCTAGTGTGATGTTTATAGTTT
66 GCTAGTGTGATGGTTATAGTTT
70529257 GTTGTGAAAA
Statistics
Matches: 86, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
92 4 0.05
93 82 0.95
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43
Consensus pattern (92 bp):
TATGTGGCATGTAATAGGGGTATCTTGTATATATTATAATTATTTACTCCAAATGGTATGCTTAT
GCTAGTGTGATGGTTATAGTTTAAGGT
Found at i:70529684 original size:24 final size:24
Alignment explanation
Indices: 70529657--70529708 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
70529647 ATTTTAGGTG
*
70529657 CACACAACTTGAGACACGGGCTT-T
1 CACACAACCTGAGACACGGG-TTGT
* *
70529681 CACATAGCCTGAGACACGGGTTGT
1 CACACAACCTGAGACACGGGTTGT
70529705 CACA
1 CACA
70529709 TGGCGTGTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (24 bp):
CACACAACCTGAGACACGGGTTGT
Found at i:70533143 original size:43 final size:43
Alignment explanation
Indices: 70533081--70533195 Score: 146
Period size: 43 Copynumber: 2.7 Consensus size: 43
70533071 ATATAAGTTT
* *
70533081 CAGTTTAACCC-TATTGGGTTTTCGTTTAGCTCTTTTGTAGCTT-
1 CAGTTTAACCCTTA-TGGGTTTCCGTTTAGCTCTTATG-AGCTTC
* *
70533124 TAGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTATGAGCTTC
1 CAGTTTAACCCTTATGGGTTTCCGTTTAGCTCTTATGAGCTTC
*
70533167 CA-TTCAACCCTTATGGGTTTCCGTTTAGC
1 CAGTTTAACCCTTATGGGTTTCCGTTTAGC
70533196 ACTTGTGTGC
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 30 0.48
43 31 0.49
44 2 0.03
ACGTcount: A:0.16, C:0.23, G:0.18, T:0.43
Consensus pattern (43 bp):
CAGTTTAACCCTTATGGGTTTCCGTTTAGCTCTTATGAGCTTC
Found at i:70533160 original size:21 final size:21
Alignment explanation
Indices: 70533130--70533191 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
70533120 GCTTTAGTTT
70533130 AACCCTTATGGGTTTCCGTTC
1 AACCCTTATGGGTTTCCGTTC
* * * * *
70533151 AGCTCTTATGAGCTTCCATTC
1 AACCCTTATGGGTTTCCGTTC
70533172 AACCCTTATGGGTTTCCGTT
1 AACCCTTATGGGTTTCCGTT
70533192 TAGCACTTGT
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.16, C:0.27, G:0.18, T:0.39
Consensus pattern (21 bp):
AACCCTTATGGGTTTCCGTTC
Found at i:70533178 original size:42 final size:43
Alignment explanation
Indices: 70533079--70533208 Score: 133
Period size: 42 Copynumber: 3.1 Consensus size: 43
70533069 TCATATAAGT
* * * *
70533079 TTCAGTTTAACCC-TATTGGGTTTTCGTTTAGCTCTTTTGTAGC
1 TTCAGTTCAACCCTTA-TGGGTTTCCGTTCAGCTCTTATGTAGC
* *
70533122 TTTAGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTATG-AGC
1 TTCAGTTCAACCCTTATGGGTTTCCGTTCAGCTCTTATGTAGC
* * *
70533164 TTCCA-TTCAACCCTTATGGGTTTCCGTTTAGCACTTGTGT-GC
1 TT-CAGTTCAACCCTTATGGGTTTCCGTTCAGCTCTTATGTAGC
70533206 TTC
1 TTC
70533209 TGTGCAGCCT
Statistics
Matches: 75, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
41 1 0.01
42 39 0.52
43 33 0.44
44 2 0.03
ACGTcount: A:0.15, C:0.22, G:0.18, T:0.45
Consensus pattern (43 bp):
TTCAGTTCAACCCTTATGGGTTTCCGTTCAGCTCTTATGTAGC
Found at i:70544523 original size:33 final size:33
Alignment explanation
Indices: 70544470--70544544 Score: 77
Period size: 33 Copynumber: 2.3 Consensus size: 33
70544460 GGCCCTATCG
*
70544470 TGGTCTT-TTATTCACATGCCATAA-CCCGGTTA
1 TGGTCTTATTATTCACATGCCA-AAGCCCGGCTA
*
70544502 TGGTCTTATTATTCGA-TTGCCAAAGCCCGGCTA
1 TGGTCTTATTATTC-ACATGCCAAAGCCCGGCTA
70544535 -GGATCTTATT
1 TGG-TCTTATT
70544545 TGGCATCTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
32 11 0.30
33 25 0.68
34 1 0.03
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (33 bp):
TGGTCTTATTATTCACATGCCAAAGCCCGGCTA
Found at i:70548640 original size:45 final size:44
Alignment explanation
Indices: 70548576--70548666 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 44
70548566 TGAAAAATGA
*
70548576 TATTCTTTTTGAAGCTCACAGTAGTATATATTCCATTCATCCGGG
1 TATTCTTTCTGAAGCTCACAGTAGTATATATTCCATT-ATCCGGG
* *
70548621 TATTCTTTCTGAAGCTCACAGTAGTATGTATTCCATTATCTGGG
1 TATTCTTTCTGAAGCTCACAGTAGTATATATTCCATTATCCGGG
70548665 TA
1 TA
70548667 GTACGAAGAT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
44 8 0.19
45 35 0.81
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.41
Consensus pattern (44 bp):
TATTCTTTCTGAAGCTCACAGTAGTATATATTCCATTATCCGGG
Found at i:70551330 original size:43 final size:43
Alignment explanation
Indices: 70551269--70551416 Score: 125
Period size: 43 Copynumber: 3.4 Consensus size: 43
70551259 AAATGGAAAA
* * * *
70551269 ACACCACTATAGAACATGAAATTTAGTGGTGTTTTTCTCATAG
1 ACACCACTATAGAACATGAAATTTAGCGGTGCTTTTCCCACAG
* **
70551312 ACACCATTATAGAACATGACCTTTAGCGGTGCTTTTCCCACAG
1 ACACCACTATAGAACATGAAATTTAGCGGTGCTTTTCCCACAG
** * ** ** * *
70551355 ACACTGCTATAGGATGTGACCTTTAGCGGCGCTTTCCCCACAG
1 ACACCACTATAGAACATGAAATTTAGCGGTGCTTTTCCCACAG
* * *
70551398 ACGCCACTAAAGATCATGA
1 ACACCACTATAGAACATGA
70551417 CCTTTGGAGT
Statistics
Matches: 82, Mismatches: 23, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
43 82 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (43 bp):
ACACCACTATAGAACATGAAATTTAGCGGTGCTTTTCCCACAG
Found at i:70557529 original size:46 final size:46
Alignment explanation
Indices: 70557479--70557654 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
70557469 TGGTTGAGCA
*
70557479 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
70557525 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
70557570 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
70557618 CCCGAGCTCGCTGATTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70557655 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70557637 original size:93 final size:93
Alignment explanation
Indices: 70557476--70557647 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
70557466 GGATGGTTGA
* * * *
70557476 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGCTGAGT
*
70557541 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
70557569 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGCTGATT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGCTGAGT
70557634 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
70557648 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGCTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70572223 original size:19 final size:19
Alignment explanation
Indices: 70572195--70572248 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
70572185 GTGTACACGA
* *
70572195 ATGAATTACTGTTATATGG
1 ATGAAGTACTGTTATAAGG
*
70572214 ATGAAGTACTGCTTAAAAGG
1 ATGAAGTACTG-TTATAAGG
70572234 ATG-AGTTACTGTTAT
1 ATGAAG-TACTGTTAT
70572249 CGAATAAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.37
Consensus pattern (19 bp):
ATGAAGTACTGTTATAAGG
Found at i:70574914 original size:26 final size:26
Alignment explanation
Indices: 70574884--70574953 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
70574874 TGACTCACCA
*
70574884 TAGCTCGTATGAGCTTACCGATATAT
1 TAGCTCGTAAGAGCTTACCGATATAT
* * * *
70574910 TAGCTCATACGAGCTTACCGGTGTAT
1 TAGCTCGTAAGAGCTTACCGATATAT
*
70574936 CAGCTCGTAAGAGCTTAC
1 TAGCTCGTAAGAGCTTAC
70574954 TGTTTTCAGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
TAGCTCGTAAGAGCTTACCGATATAT
Found at i:70582607 original size:23 final size:23
Alignment explanation
Indices: 70582495--70582618 Score: 110
Period size: 23 Copynumber: 5.3 Consensus size: 23
70582485 TATCGATATA
*
70582495 TCAGCTC-GTAAGAGCTCACTGTTT
1 TCAGCTCAGT-AGAGCTTACTG-TT
* * * *
70582519 TCAGCTTATTGGAGCTTACTG-C
1 TCAGCTCAGTAGAGCTTACTGTT
* *
70582541 TCAGCTC-GATAGAGCATACTATT
1 TCAGCTCAG-TAGAGCTTACTGTT
*
70582564 TCAGCTCAATAGAGCTTACTGTT
1 TCAGCTCAGTAGAGCTTACTGTT
70582587 TCAGCTCAGTAGAGCTTACTGTT
1 TCAGCTCAGTAGAGCTTACTGTT
70582610 CATCAGCTC
1 --TCAGCTC
70582619 GGGAGGAGCT
Statistics
Matches: 79, Mismatches: 15, Indels: 11
0.75 0.14 0.10
Matches are distributed among these distances:
22 15 0.19
23 41 0.52
24 15 0.19
25 8 0.10
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.33
Consensus pattern (23 bp):
TCAGCTCAGTAGAGCTTACTGTT
Found at i:70584652 original size:22 final size:21
Alignment explanation
Indices: 70584603--70584652 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
70584593 CTTTAACATT
**
70584603 GGCGTGTCCCAGGGTCACACG
1 GGCGTGTCCCAGGACCACACG
* *
70584624 GGTGTGTCCCTAGGACCACTCG
1 GGCGTGTCCC-AGGACCACACG
70584646 GGCGTGT
1 GGCGTGT
70584653 GAGCCCTGCA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.12, C:0.30, G:0.38, T:0.20
Consensus pattern (21 bp):
GGCGTGTCCCAGGACCACACG
Found at i:70594073 original size:53 final size:49
Alignment explanation
Indices: 70593993--70594251 Score: 249
Period size: 47 Copynumber: 5.3 Consensus size: 49
70593983 CCATGGCAAC
70593993 ATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGAGAG
1 ATGTGATATGTGA-TTCCGTATAAGACCATAGCTGGGCTATGGCATC---GAG
* ** * *
70594046 ATGTGATTATGTGCTTCCGTATAAGACCATATATGGGATATGGTATCG-G
1 ATGTGA-TATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGAG
* * * * * * *
70594095 -TGTGATATATGCTACTGTATAAGACCATATCTGGGATATGACATC-AG
1 ATGTGATATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGAG
* * *
70594142 -TGAGATATGTGATT-CGTGTAAGACCATAGCTGGGCTATGGCATCGAT
1 ATGTGATATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGAG
* * * *
70594189 ATGTGATATGTGATTTCGTGTAAGACCATAGTTGGGCTATGGCATCGAT
1 ATGTGATATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGAG
*
70594238 ATATGAATATGTGA
1 ATGTG-ATATGTGA
70594252 AAGGCCATAG
Statistics
Matches: 176, Mismatches: 24, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
46 25 0.14
47 46 0.26
48 18 0.10
49 37 0.21
50 9 0.05
53 35 0.20
54 6 0.03
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (49 bp):
ATGTGATATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGAG
Found at i:70594314 original size:42 final size:41
Alignment explanation
Indices: 70594206--70594306 Score: 130
Period size: 42 Copynumber: 2.4 Consensus size: 41
70594196 ATGTGATTTC
* *
70594206 GTGTAAGACCATAGTTGGGCTATGGCATCGATATATGAATAT
1 GTGTAAGGCCATAGTTGGGCTATGGCATC-ATATATGAAGAT
* * * *
70594248 GTGAAAGGCCATAGCTGGGTTATGGCATCATTATCTGAAGAT
1 GTGTAAGGCCATAGTTGGGCTATGGCATCA-TATATGAAGAT
70594290 GTGTAAGGCCATAGTTG
1 GTGTAAGGCCATAGTTG
70594307 AACTATGGAA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
41 1 0.02
42 49 0.98
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.30
Consensus pattern (41 bp):
GTGTAAGGCCATAGTTGGGCTATGGCATCATATATGAAGAT
Found at i:70594401 original size:15 final size:15
Alignment explanation
Indices: 70594381--70594414 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
70594371 GGCAAGTGTT
70594381 ATATGGAACTATGTG
1 ATATGGAACTATGTG
70594396 ATATGGAACTATGTG
1 ATATGGAACTATGTG
70594411 ATAT
1 ATAT
70594415 AAGGAAGTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.35
Consensus pattern (15 bp):
ATATGGAACTATGTG
Found at i:70595061 original size:22 final size:26
Alignment explanation
Indices: 70595017--70595068 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
70595007 AAATTGATTC
70595017 ATAAATGTATTAAAATGTTGGTGA-AA
1 ATAAATGTATTAAAATG-TGGTGAGAA
70595043 ATAAATG-ATT-AAATG-GGTGAGAA
1 ATAAATGTATTAAAATGTGGTGAGAA
70595066 ATA
1 ATA
70595069 TGGTTTGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 5 0.20
23 5 0.20
24 5 0.20
25 3 0.12
26 7 0.28
ACGTcount: A:0.48, C:0.00, G:0.21, T:0.31
Consensus pattern (26 bp):
ATAAATGTATTAAAATGTGGTGAGAA
Found at i:70598978 original size:14 final size:15
Alignment explanation
Indices: 70598959--70598997 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
70598949 ACCCATTTTT
70598959 CAGTGGTTTCGA-AA
1 CAGTGGTTTCGAGAA
70598973 CAGTGGTTTC-AGAA
1 CAGTGGTTTCGAGAA
*
70598987 CAGTAGTTTCG
1 CAGTGGTTTCG
70598998 GGACCACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 1 0.05
14 21 0.95
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (15 bp):
CAGTGGTTTCGAGAA
Found at i:70615306 original size:43 final size:42
Alignment explanation
Indices: 70615241--70615364 Score: 133
Period size: 43 Copynumber: 2.9 Consensus size: 42
70615231 AGCTCATACA
* * * *
70615241 ATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCATGTCCCAGACATGGTCTTACATGTAATCACATAACG
* * * * *
70615283 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCGA-TTAACT
1 ATGCCA-TGTCCCAGACATGGTCTTACATGTAATC-ACATAACG
70615326 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
1 ATGCC-ATGTCCCAGACATGGTCTTACATGTAATCACAT
70615365 CTCGTAACCT
Statistics
Matches: 65, Mismatches: 13, Indels: 7
0.76 0.15 0.08
Matches are distributed among these distances:
42 7 0.11
43 56 0.86
44 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACATGTAATCACATAACG
Found at i:70618602 original size:14 final size:14
Alignment explanation
Indices: 70618583--70618612 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70618573 TTATATCGAG
70618583 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
70618597 ACCAATCCAATTCA
1 ACCAATCCAAATCA
70618611 AC
1 AC
70618613 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:70624215 original size:62 final size:57
Alignment explanation
Indices: 70624134--70624266 Score: 167
Period size: 62 Copynumber: 2.2 Consensus size: 57
70624124 TCCAAAAATA
* * * *
70624134 ATATTATTTTAATATTTTAATATTAAATTTAATTTAATGTTTATCTTGTAGATAAATATT
1 ATATTATTTTAATAATTTAATATTAAATTTAATATAATATTTATC--AT-GATAAATATT
*
70624194 CTATTATTTTAATACGATTTAATATTAAATTTAATATAATATTTATCATGATAAATATT
1 ATATTATTTTAATA--ATTTAATATTAAATTTAATATAATATTTATCATGATAAATATT
*
70624253 ATATTAATTTAATA
1 ATATTATTTTAATA
70624267 TTAAAGTGAT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
59 22 0.34
60 14 0.22
62 28 0.44
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (57 bp):
ATATTATTTTAATAATTTAATATTAAATTTAATATAATATTTATCATGATAAATATT
Found at i:70624227 original size:12 final size:12
Alignment explanation
Indices: 70624210--70624271 Score: 51
Period size: 12 Copynumber: 5.1 Consensus size: 12
70624200 TTTTAATACG
70624210 ATTTAATATTAA
1 ATTTAATATTAA
70624222 ATTTAATA-TAA
1 ATTTAATATTAA
70624233 TATTT-ATCATGATAA
1 -ATTTAAT-AT--TAA
70624248 ATATT-ATATT-A
1 AT-TTAATATTAA
70624259 ATTTAATATTAA
1 ATTTAATATTAA
70624271 A
1 A
70624272 GTGATTAAGT
Statistics
Matches: 42, Mismatches: 0, Indels: 16
0.72 0.00 0.28
Matches are distributed among these distances:
10 2 0.05
11 13 0.31
12 16 0.38
14 4 0.10
15 7 0.17
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (12 bp):
ATTTAATATTAA
Found at i:70627208 original size:12 final size:12
Alignment explanation
Indices: 70627191--70627215 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70627181 GAGTAAGTGT
70627191 TTCTACTTAATC
1 TTCTACTTAATC
70627203 TTCTACTTAATC
1 TTCTACTTAATC
70627215 T
1 T
70627216 AATGGTGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (12 bp):
TTCTACTTAATC
Found at i:70627530 original size:23 final size:23
Alignment explanation
Indices: 70627499--70627579 Score: 92
Period size: 23 Copynumber: 3.6 Consensus size: 23
70627489 TAAGTGGATG
*
70627499 TGTTTGGAGGGAATATTTGGTTA
1 TGTTTGGAGGGTATATTTGGTTA
* * **
70627522 TGTTGGGAGGCTATATTTGGTGG
1 TGTTTGGAGGGTATATTTGGTTA
* *
70627545 TG-TTGGAGGGTATGTTTAGTTA
1 TGTTTGGAGGGTATATTTGGTTA
70627567 TGTTTGGAGGGTA
1 TGTTTGGAGGGTA
70627580 AATTGATTGT
Statistics
Matches: 46, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
22 16 0.35
23 30 0.65
ACGTcount: A:0.17, C:0.01, G:0.40, T:0.42
Consensus pattern (23 bp):
TGTTTGGAGGGTATATTTGGTTA
Found at i:70629612 original size:20 final size:20
Alignment explanation
Indices: 70629587--70629624 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70629577 AATATATGTG
*
70629587 GTCAAGCCACTATAATTGTA
1 GTCAAGCCACCATAATTGTA
*
70629607 GTCAAGCTACCATAATTG
1 GTCAAGCCACCATAATTG
70629625 ATATTGCAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (20 bp):
GTCAAGCCACCATAATTGTA
Found at i:70632724 original size:19 final size:19
Alignment explanation
Indices: 70632700--70632740 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
70632690 CCGTGGAGCC
70632700 TCTATTTCTCAAAAATTTA
1 TCTATTTCTCAAAAATTTA
70632719 TCTATTTCTCAAAAATTTA
1 TCTATTTCTCAAAAATTTA
70632738 TCT
1 TCT
70632741 TCGTTTTGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (19 bp):
TCTATTTCTCAAAAATTTA
Found at i:70644135 original size:13 final size:13
Alignment explanation
Indices: 70644117--70644141 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70644107 GCTCGGCACG
70644117 GACACGCCCGTGT
1 GACACGCCCGTGT
70644130 GACACGCCCGTG
1 GACACGCCCGTG
70644142 CTCGATTACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.32, T:0.12
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:70655887 original size:14 final size:13
Alignment explanation
Indices: 70655854--70655878 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70655844 ATAAATGTAA
70655854 ATTTTAATTTATG
1 ATTTTAATTTATG
70655867 ATTTTAATTTAT
1 ATTTTAATTTAT
70655879 TTATTTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
ATTTTAATTTATG
Found at i:70658962 original size:10 final size:9
Alignment explanation
Indices: 70658948--70659013 Score: 51
Period size: 10 Copynumber: 6.4 Consensus size: 9
70658938 TATATTTTTT
70658948 AAAAAATTA
1 AAAAAATTA
*
70658957 TAAAAATTTCAA
1 -AAAAAATT--A
70658969 AAAAAATTCA
1 AAAAAATT-A
70658979 AAAAAATATA
1 AAAAAAT-TA
70658989 TAAAGAAAGTTA
1 -AAA-AAA-TTA
70659001 AAAAAATTA
1 AAAAAATTA
70659010 AAAA
1 AAAA
70659014 TTTTCTAGGA
Statistics
Matches: 47, Mismatches: 3, Indels: 13
0.75 0.05 0.21
Matches are distributed among these distances:
9 7 0.15
10 19 0.40
11 14 0.30
12 6 0.13
13 1 0.02
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (9 bp):
AAAAAATTA
Found at i:70663686 original size:20 final size:20
Alignment explanation
Indices: 70663661--70663698 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70663651 GACGGAATAG
* *
70663661 AACCACGAAACTGTGAACAA
1 AACCACAAAAATGTGAACAA
70663681 AACCACAAAAATGTGAAC
1 AACCACAAAAATGTGAAC
70663699 TGAAATTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.24, G:0.13, T:0.11
Consensus pattern (20 bp):
AACCACAAAAATGTGAACAA
Found at i:70663998 original size:21 final size:20
Alignment explanation
Indices: 70663972--70664011 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
70663962 TTGGCCTAAC
*
70663972 AAACAAAATCTAAATTAAAAT
1 AAACAAAATC-AAATGAAAAT
70663993 AAACAAAATCAAATGAAAA
1 AAACAAAATCAAATGAAAA
70664012 GACAACTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.70, C:0.10, G:0.03, T:0.17
Consensus pattern (20 bp):
AAACAAAATCAAATGAAAAT
Found at i:70666507 original size:22 final size:23
Alignment explanation
Indices: 70666479--70666554 Score: 94
Period size: 22 Copynumber: 3.6 Consensus size: 23
70666469 ACATCTCTAT
70666479 AGCAATTA-ACATACTTAACTTG
1 AGCAATTATACATACTTAACTTG
70666501 AGCAATTATACAT-C-T--CTAT-
1 AGCAATTATACATACTTAACT-TG
70666520 AGCAATTA-ACATACTTAACTTG
1 AGCAATTATACATACTTAACTTG
70666542 AGCAATTATACAT
1 AGCAATTATACAT
70666555 CCACAATCAA
Statistics
Matches: 46, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
18 4 0.09
19 11 0.24
20 2 0.04
21 2 0.04
22 19 0.41
23 8 0.17
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (23 bp):
AGCAATTATACATACTTAACTTG
Found at i:70666523 original size:19 final size:18
Alignment explanation
Indices: 70666469--70666531 Score: 65
Period size: 19 Copynumber: 3.2 Consensus size: 18
70666459 ACACACTTGT
70666469 ACATCTCTATAGCAATTA
1 ACATCTCTATAGCAATTA
70666487 ACATACT-TAACTTGAGCAATTA
1 ACAT-CTCT-A--T-AGCAATTA
70666509 TACATCTCTATAGCAATTA
1 -ACATCTCTATAGCAATTA
70666528 ACAT
1 ACAT
70666532 ACTTAACTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
18 9 0.24
19 11 0.29
20 1 0.03
21 1 0.03
22 11 0.29
23 5 0.13
ACGTcount: A:0.40, C:0.21, G:0.06, T:0.33
Consensus pattern (18 bp):
ACATCTCTATAGCAATTA
Found at i:70666525 original size:41 final size:41
Alignment explanation
Indices: 70666468--70666555 Score: 176
Period size: 41 Copynumber: 2.1 Consensus size: 41
70666458 CACACACTTG
70666468 TACATCTCTATAGCAATTAACATACTTAACTTGAGCAATTA
1 TACATCTCTATAGCAATTAACATACTTAACTTGAGCAATTA
70666509 TACATCTCTATAGCAATTAACATACTTAACTTGAGCAATTA
1 TACATCTCTATAGCAATTAACATACTTAACTTGAGCAATTA
70666550 TACATC
1 TACATC
70666556 CACAATCAAG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.39, C:0.20, G:0.07, T:0.34
Consensus pattern (41 bp):
TACATCTCTATAGCAATTAACATACTTAACTTGAGCAATTA
Found at i:70670564 original size:46 final size:46
Alignment explanation
Indices: 70670511--70670683 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 46
70670501 TGGTTGAGCA
*
70670511 TCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * *
70670557 TCTGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
70670602 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
70670650 CCCGAGCTCGTTTAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70670684 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 56 0.55
47 28 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70670667 original size:93 final size:93
Alignment explanation
Indices: 70670508--70670678 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
70670498 GGATGGTTGA
* * *
70670508 GCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
70670573 TGAGTTCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * *
70670601 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTTAGT
1 GCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
70670666 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
70670679 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:70673663 original size:40 final size:40
Alignment explanation
Indices: 70673579--70673753 Score: 187
Period size: 40 Copynumber: 4.4 Consensus size: 40
70673569 TTGAATGCTG
* * * *
70673579 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
70673618 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
70673659 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
70673699 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
70673739 TCCGGGTTAAGTCCC
1 TCCGGGTTAAGTCCC
70673754 ANNNNNNNNN
Statistics
Matches: 116, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 2 0.02
40 104 0.90
41 10 0.09
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:70673716 original size:80 final size:80
Alignment explanation
Indices: 70673579--70673753 Score: 216
Period size: 80 Copynumber: 2.2 Consensus size: 80
70673569 TTGAATGCTG
* * *
70673579 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATTC
*
70673644 GTGCGAGTTATT-AAT
66 GTGCGAGTT-TTAAAA
**
70673659 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
70673720 ATTCGTGCGAGTTTTAAAA
62 ATTCGTGCGAGTTTTAAAA
70673739 TCCGGGTTAAGTCCC
1 TCCGGGTTAAGTCCC
70673754 ANNNNNNNNN
Statistics
Matches: 84, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
79 4 0.05
80 71 0.85
81 9 0.11
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTTTAAAA
Found at i:70685286 original size:40 final size:40
Alignment explanation
Indices: 70685202--70685385 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
70685192 TTGAATGCTG
* * * *
70685202 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
70685241 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
70685282 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
70685322 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
70685362 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
70685386 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:70685339 original size:80 final size:81
Alignment explanation
Indices: 70685202--70685382 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
70685192 TTGAATGCTG
* *
70685202 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
70685266 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
70685282 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
70685343 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
70685362 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
70685383 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:70693239 original size:40 final size:40
Alignment explanation
Indices: 70693155--70693338 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
70693145 TTGAATGCTG
* * * *
70693155 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
70693194 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
70693235 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
70693275 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
70693315 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
70693339 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:70693292 original size:80 final size:81
Alignment explanation
Indices: 70693155--70693335 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
70693145 TTGAATGCTG
* *
70693155 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
70693219 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
70693235 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
70693296 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
70693315 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
70693336 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:70708078 original size:47 final size:47
Alignment explanation
Indices: 70708024--70708119 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
70708014 AGTTACCTCA
*
70708024 TTTTGTTCTAACCTTGACAAATGATTGGCTACATCAGCTACTTGATT
1 TTTTGTTCTAACCTTGACAAATGATTGGCTACATCAACTACTTGATT
70708071 TTTTGTTCTAACCTTGACAAATGATTGGCTACATCAACTACTTGATT
1 TTTTGTTCTAACCTTGACAAATGATTGGCTACATCAACTACTTGATT
70708118 TT
1 TT
70708120 CAACACCTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.42
Consensus pattern (47 bp):
TTTTGTTCTAACCTTGACAAATGATTGGCTACATCAACTACTTGATT
Found at i:70712139 original size:40 final size:39
Alignment explanation
Indices: 70712089--70712273 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 39
70712079 GCTACTCGTT
* *
70712089 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTACCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT--AGTAACTCGCA
* *
70712129 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
*
70712169 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTAGTAACTCGCA
* * * *
70712208 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
70712249 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70712274 CATCATTCAA
Statistics
Matches: 124, Mismatches: 13, Indels: 16
0.81 0.08 0.10
Matches are distributed among these distances:
38 2 0.02
39 34 0.27
40 75 0.60
41 11 0.09
42 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:70712206 original size:79 final size:81
Alignment explanation
Indices: 70712089--70712273 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
70712079 GCTACTCGTT
* *
70712089 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTACCTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTA-AGTACCTCGCACAAATGCCTTC-GGATCTTAACCC
* *
70712152 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
70712169 CAAATGCCTTCGGG-CTTAGCCCGGAATT-AGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTAAGTACCTCGCACAAATGCCTTCGGATCTTAACCCG
* *
70712232 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
70712249 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70712274 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 32 0.35
81 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAAGTACCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:70720793 original size:46 final size:45
Alignment explanation
Indices: 70720743--70720918 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
70720733 TGTTTGGGCA
70720743 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
70720789 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
70720836 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
70720882 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70720919 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 66 0.61
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:70720898 original size:93 final size:93
Alignment explanation
Indices: 70720739--70720911 Score: 294
Period size: 93 Copynumber: 1.9 Consensus size: 93
70720729 AGGATGTTTG
*
70720739 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
70720804 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
70720832 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGA
70720896 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
70720912 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
92 1 0.01
93 74 0.99
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:70727046 original size:39 final size:39
Alignment explanation
Indices: 70726998--70727075 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
70726988 GCTCGTTCTG
* *
70726998 TTTTGTCATTAACAATAGGATAATTATTATGTACCCCTA
1 TTTTATCATTAACAATAGGATAATTATTATATACCCCTA
* *
70727037 TTTTATCATTACCAATAGGATAATTATTCTATACCCCTA
1 TTTTATCATTAACAATAGGATAATTATTATATACCCCTA
70727076 CAAAACCTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (39 bp):
TTTTATCATTAACAATAGGATAATTATTATATACCCCTA
Found at i:70735392 original size:15 final size:15
Alignment explanation
Indices: 70735372--70735406 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
70735362 ATAAAAAAAT
*
70735372 TATCATTTGTATTTA
1 TATCATTTATATTTA
70735387 TATCATTTATATTTA
1 TATCATTTATATTTA
*
70735402 CATCA
1 TATCA
70735407 CAAAATGTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.31, C:0.11, G:0.03, T:0.54
Consensus pattern (15 bp):
TATCATTTATATTTA
Found at i:70735610 original size:24 final size:24
Alignment explanation
Indices: 70735550--70735610 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
70735540 GTCCTCATCT
*
70735550 TCTTCATCTTCACCTCAACCCTCA
1 TCTTCATCTTCATCTCAACCCTCA
* * *
70735574 TCCTCATCTTCATCTCGACCCTCG
1 TCTTCATCTTCATCTCAACCCTCA
70735598 TCTTCATCTTCAT
1 TCTTCATCTTCAT
70735611 TTCTATTCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.16, C:0.43, G:0.03, T:0.38
Consensus pattern (24 bp):
TCTTCATCTTCATCTCAACCCTCA
Found at i:70737817 original size:9 final size:9
Alignment explanation
Indices: 70737793--70737840 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
70737783 CAAACAAAAC
*
70737793 TTGAGAAAA
1 TTGAGAGAA
70737802 TTGAGAGAA
1 TTGAGAGAA
*
70737811 TTGAGAG-T
1 TTGAGAGAA
70737819 TTAGAGAGAA
1 TT-GAGAGAA
*
70737829 TAGAGAGAA
1 TTGAGAGAA
70737838 TTG
1 TTG
70737841 CCATTCATCT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
8 2 0.06
9 29 0.91
10 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.31, T:0.25
Consensus pattern (9 bp):
TTGAGAGAA
Found at i:70739840 original size:18 final size:18
Alignment explanation
Indices: 70739799--70739857 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
70739789 TCTTTATCGT
* * *
70739799 TCAGTACTAGTCAGTCAA
1 TCAGTAATAATCAGTTAA
70739817 -CAGTAATAATCAGTTAA
1 TCAGTAATAATCAGTTAA
* * *
70739834 TCAGTAATATTCATTTAT
1 TCAGTAATAATCAGTTAA
70739852 TCAGTA
1 TCAGTA
70739858 TCAGTCGTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
17 14 0.41
18 20 0.59
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (18 bp):
TCAGTAATAATCAGTTAA
Found at i:70739868 original size:18 final size:18
Alignment explanation
Indices: 70739847--70739881 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
70739837 GTAATATTCA
*
70739847 TTTATTCAGTATCAGTCG
1 TTTATTCAGTAACAGTCG
*
70739865 TTTATTCTGTAACAGTC
1 TTTATTCAGTAACAGTC
70739882 AATTATTTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46
Consensus pattern (18 bp):
TTTATTCAGTAACAGTCG
Done.