Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 213 of 344
Found at i:70741118 original size:19 final size:19
Alignment explanation
Indices: 70741077--70741117 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
70741067 AACCCTTCAA
70741077 TTTT-TCCTTTCTTCTTTC
1 TTTTCTCCTTTCTTCTTTC
70741095 TTTTCTCCTTTCTTTCTTTC
1 TTTTCTCCTTTC-TTCTTTC
70741115 TTT
1 TTT
70741118 CCATGCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 4 0.19
19 7 0.33
20 10 0.48
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTCTCCTTTCTTCTTTC
Found at i:70741158 original size:17 final size:15
Alignment explanation
Indices: 70741088--70741169 Score: 55
Period size: 16 Copynumber: 5.3 Consensus size: 15
70741078 TTTTCCTTTC
70741088 TTCT-TTCTTTTCTCCT
1 TTCTATTCTTTTCT--T
70741104 TTCT-TTC-TTTC-T
1 TTCTATTCTTTTCTT
* *
70741116 TTCCATGCTTTTCGTT
1 TTCTATTCTTTTC-TT
70741132 TTGCCTATTCTGTTTCTAT
1 TT--CTATTCT-TTTCT-T
70741151 TTCTATTCTTTTCTT
1 TTCTATTCTTTTCTT
70741166 TTCT
1 TTCT
70741170 TATTTCATTA
Statistics
Matches: 54, Mismatches: 4, Indels: 17
0.72 0.05 0.23
Matches are distributed among these distances:
12 4 0.07
13 2 0.04
14 4 0.07
15 9 0.17
16 15 0.28
17 7 0.13
18 6 0.11
19 7 0.13
ACGTcount: A:0.05, C:0.24, G:0.05, T:0.66
Consensus pattern (15 bp):
TTCTATTCTTTTCTT
Found at i:70748999 original size:46 final size:46
Alignment explanation
Indices: 70748947--70749119 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
70748937 TTGGGCATCT
70748947 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
* * *
70748993 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCC
* * * * **
70749040 GAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGGAGGCGAACACCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
* *
70749086 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70749120 GCGAGTTACA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 61 0.58
47 26 0.25
48 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
Found at i:70752537 original size:19 final size:18
Alignment explanation
Indices: 70752466--70752535 Score: 56
Period size: 19 Copynumber: 3.8 Consensus size: 18
70752456 TTTACTTATT
*
70752466 TATTTCATTCTTATTAGTA
1 TATTTCATTATTATT-GTA
70752485 TTATTTC-TTATTATTGT-
1 -TATTTCATTATTATTGTA
*
70752502 TATTT-ATTTATTATTTTA
1 TATTTCA-TTATTATTGTA
*
70752520 CTATTTCATTCTTATT
1 -TATTTCATTATTATT
70752536 TTTTTATTCT
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
16 5 0.12
17 9 0.21
18 2 0.05
19 19 0.45
20 7 0.17
ACGTcount: A:0.23, C:0.09, G:0.03, T:0.66
Consensus pattern (18 bp):
TATTTCATTATTATTGTA
Found at i:70752543 original size:19 final size:20
Alignment explanation
Indices: 70752464--70752543 Score: 59
Period size: 16 Copynumber: 4.3 Consensus size: 20
70752454 TTTTTACTTA
*
70752464 TTTATTTCATTCTTATTAGT
1 TTTATTTCATTCTTATTATT
*
70752484 ATTA--T--TTCTTATTATT
1 TTTATTTCATTCTTATTATT
*
70752500 GTTATTT-A-T-TTATTATT
1 TTTATTTCATTCTTATTATT
70752517 TTACTATTTCATTCTTATT-TT
1 TT--TATTTCATTCTTATTATT
70752538 TTTATT
1 TTTATT
70752544 CTATTTTAGT
Statistics
Matches: 48, Mismatches: 4, Indels: 17
0.70 0.06 0.25
Matches are distributed among these distances:
16 13 0.27
17 9 0.19
18 3 0.06
19 9 0.19
20 4 0.08
21 5 0.10
22 5 0.10
ACGTcount: A:0.21, C:0.07, G:0.03, T:0.69
Consensus pattern (20 bp):
TTTATTTCATTCTTATTATT
Found at i:70755367 original size:10 final size:10
Alignment explanation
Indices: 70755352--70755376 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
70755342 TATTTATATT
70755352 CATATAGTTA
1 CATATAGTTA
70755362 CATATAGTTA
1 CATATAGTTA
70755372 CATAT
1 CATAT
70755377 TGTTCTAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (10 bp):
CATATAGTTA
Found at i:70758141 original size:3 final size:3
Alignment explanation
Indices: 70758133--70758177 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
70758123 GAGCACACTC
70758133 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
70758178 GATGAATGTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:70758558 original size:19 final size:18
Alignment explanation
Indices: 70758516--70758588 Score: 56
Period size: 18 Copynumber: 3.9 Consensus size: 18
70758506 AGTAAATAAC
*
70758516 ATTTTTTTTATTTTGATA
1 ATTTTTTATATTTTGATA
* *
70758534 ACTTTTTATATTTTTATTA
1 ATTTTTTATATTTTGA-TA
* * * *
70758553 ATTTTTTAAAATTTCAAA
1 ATTTTTTATATTTTGATA
70758571 ACTTTTTTTATATTTTGA
1 A--TTTTTTATATTTTGA
70758589 ATTTCAAAGT
Statistics
Matches: 41, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
18 15 0.37
19 14 0.34
20 12 0.29
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (18 bp):
ATTTTTTATATTTTGATA
Found at i:70764416 original size:12 final size:12
Alignment explanation
Indices: 70764401--70764448 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
70764391 TTGAAGAAAG
70764401 AATTATTAAGTA
1 AATTATTAAGTA
*
70764413 AATTATTATA-TG
1 AATTATTA-AGTA
*
70764425 AATTATTAAATA
1 AATTATTAAGTA
*
70764437 AGTTATTAAGTA
1 AATTATTAAGTA
70764449 TAGTAGAAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
11 1 0.03
12 28 0.93
13 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (12 bp):
AATTATTAAGTA
Found at i:70771100 original size:29 final size:29
Alignment explanation
Indices: 70771058--70771117 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
70771048 TATCAAAGTG
70771058 CTTGAGATGTACCTTACTTGCAGCATTTA
1 CTTGAGATGTACCTTACTTGCAGCATTTA
*
70771087 CTTGAGATGTACCTTACTTGTAGCATTTA
1 CTTGAGATGTACCTTACTTGCAGCATTTA
70771116 CT
1 CT
70771118 CTGGTCAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (29 bp):
CTTGAGATGTACCTTACTTGCAGCATTTA
Found at i:70771105 original size:16 final size:16
Alignment explanation
Indices: 70771058--70771106 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
70771048 TATCAAAGTG
70771058 CTTGAGATGTACCTTA
1 CTTGAGATGTACCTTA
* * *
70771074 CTTG-CA-GCA-TTTA
1 CTTGAGATGTACCTTA
70771087 CTTGAGATGTACCTTA
1 CTTGAGATGTACCTTA
70771103 CTTG
1 CTTG
70771107 TAGCATTTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 6
0.67 0.17 0.17
Matches are distributed among these distances:
13 7 0.29
14 3 0.12
15 3 0.12
16 11 0.46
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.39
Consensus pattern (16 bp):
CTTGAGATGTACCTTA
Found at i:70772334 original size:55 final size:55
Alignment explanation
Indices: 70772261--70772390 Score: 208
Period size: 55 Copynumber: 2.4 Consensus size: 55
70772251 GTGTCCTTAG
* *
70772261 CCCATGTGCAACATTGACTTTAAAACACGACCATGACACACGCCCGTGTGGCCTA
1 CCCATGTACAACACTGACTTTAAAACACGACCATGACACACGCCCGTGTGGCCTA
*
70772316 CCCATGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCTA
1 CCCATGTACAACACTGACTTTAAAACACGACCATGACACACGCCCGTGTGGCCTA
*
70772371 CCCGTGTACTAA-ACTGACTT
1 CCCATGTAC-AACACTGACTT
70772391 AAAGTTTTCA
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
55 68 0.97
56 2 0.03
ACGTcount: A:0.28, C:0.33, G:0.18, T:0.21
Consensus pattern (55 bp):
CCCATGTACAACACTGACTTTAAAACACGACCATGACACACGCCCGTGTGGCCTA
Found at i:70777157 original size:6 final size:6
Alignment explanation
Indices: 70777146--70777177 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
70777136 TGCACTAAAT
*
70777146 AATGCC AATGCC AATGCC AATGCC AATACC AA
1 AATGCC AATGCC AATGCC AATGCC AATGCC AA
70777178 CTAAGCTAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.41, C:0.31, G:0.12, T:0.16
Consensus pattern (6 bp):
AATGCC
Found at i:70777230 original size:832 final size:832
Alignment explanation
Indices: 70775627--70778123 Score: 4859
Period size: 832 Copynumber: 3.0 Consensus size: 832
70775617 TTCGTGTAGC
* *
70775627 CTTAGGCGATCATTTAGTTTCAAACATGCCTAAGTCAACCTAACCACCAAACAATTGAGGATTTA
1 CTTAGGCGATCATTTAGTTTCAAACATGCCTAAGTCAGCCTAGCCACCAAACAATTGAGGATTTA
70775692 CAAAGAATTCCACTAAAGCACCAAGTTATATAACGGAAGCAACACAAATCAAAAGAAGGCTAAAT
66 CAAAGAATTCCACTAAAGCACCAAGTTATATAACGGAAGCAACACAAATCAAAAGAAGGCTAAAT
70775757 GAACAGAAACAGAAAATAATGCACGAGAGGTGTTTGAATAAATGCTCTCAATATCTTCTTATTCA
131 GAACAGAAACAGAAAATAATGCACGAGAGGTGTTTGAATAAATGCTCTCAATATCTTCTTATTCA
70775822 TAAAGAATAATGAAACAATGGATGATTTACAAATGATGGGGAAGCTCTCTATTTATAGTTGAGCT
196 TAAAGAATAATGAAACAATGGATGATTTACAAATGATGGGGAAGCTCTCTATTTATAGTTGAGCT
70775887 CCCCCAAAATCGACGATCTATATCAAGTTACATCGACGGATGATATTAAGCCTATCCCTAAAATT
261 CCCCCAAAATCGACGATCTATATCAAGTTACATCGACGGATGATATTAAGCCTATCCCTAAAATT
70775952 AAGGGATTTAAAAGATTTACAATATCAAATCACATCTAATCTTACAAGATATGATTCCCCTCAAT
326 AAGGGATTTAAAAGATTTACAATATCAAATCACATCTAATCTTACAAGATATGATTCCCCTCAAT
70776017 ATTCTAAGATTAGTTTTCCTAATTACCAAGGTAGCCTAGCTTTCCATATTCGCATCATTGGGTCA
391 ATTCTAAGATTAGTTTTCCTAATTACCAAGGTAGCCTAGCTTTCCATATTCGCATCATTGGGTCA
70776082 CCCAAACTTCAAATGGCAGGCTTCTTCAACAGTTCTTTGAATCGAGCTAGCTCTCGTGGGTCAAA
456 CCCAAACTTCAAATGGCAGGCTTCTTCAACAGTTCTTTGAATCGAGCTAGCTCTCGTGGGTCAAA
*
70776147 TGATCCCTATCTAAACGATAGACCTCTATGGGATGCATTTTGTGTTATGGTCACAGGCTCTGAAC
521 TGATCCCTATCTAAACGATAGACCTCTATGGGATGCATTTTGTGTTATGGTCACAGGCTCTAAAC
70776212 TGTAACATGTGACACTAAAACTACCTATAGCCTCTGCCTAACCTTAAATGGGAGGATAAATGTGC
586 TGTAACATGTGACACTAAAACTACCTATAGCCTCTGCCTAACCTTAAATGGGAGGATAAATGTGC
70776277 TTTAACGCTTTTGAACCCACATCCTCTTGCACTAAATAATGTCAATGCCAATGCCAATGCCAATA
651 TTTAACGCTTTTGAACCCACATCCTCTTGCACTAAATAATGTCAATGCCAATGCCAATGCCAATA
70776342 CCAACTAAGCTAAGACTCAATCAACTCTTTTTCTCTCTAATATTGCATAAACCTTCATGTCTATA
716 CCAACTAAGCTAAGACTCAATCAACTCTTTTTCTCTCTAATATTGCATAAACCTTCATGTCTATA
70776407 TTTCTATATGCCTCTTGGTTCAAAAAAAATTTTCTATACACCTCTATTCTTT
781 TTTCTATATGCCTCTTGGTTCAAAAAAAATTTTCTATACACCTCTATTCTTT
70776459 CTTAGGCGATCATTTAGTTTCAAACATGCCTAAGTCAGCCTAGCCACCAAACAATTGAGGATTTA
1 CTTAGGCGATCATTTAGTTTCAAACATGCCTAAGTCAGCCTAGCCACCAAACAATTGAGGATTTA
*
70776524 CAAAGAATTCCACTAAAGCACCAAGTTATATAACGGAAACAACACAAATCAAAAGAAGGCTAAAT
66 CAAAGAATTCCACTAAAGCACCAAGTTATATAACGGAAGCAACACAAATCAAAAGAAGGCTAAAT
70776589 GAACAGAAACAGAAAATAATGCACGAGAGGTGTTTGAATAAATGCTCTCAATATCTTCTTATTCA
131 GAACAGAAACAGAAAATAATGCACGAGAGGTGTTTGAATAAATGCTCTCAATATCTTCTTATTCA
70776654 TAAAGAATAATGAAACAATGGATGATTTACAAATGATGGGGAAGCTCTCTATTTATAGTTGAGCT
196 TAAAGAATAATGAAACAATGGATGATTTACAAATGATGGGGAAGCTCTCTATTTATAGTTGAGCT
*
70776719 CCCCCAAAATCGACGATCTATATCAAGTTACATCGACGGATGATATTAAGCCTATTCCTAAAATT
261 CCCCCAAAATCGACGATCTATATCAAGTTACATCGACGGATGATATTAAGCCTATCCCTAAAATT
70776784 AAGGGATTTAAAAGATTTACAATATCAAATCACATCTAATCTTACAAGATATGATTCCCCTCAAT
326 AAGGGATTTAAAAGATTTACAATATCAAATCACATCTAATCTTACAAGATATGATTCCCCTCAAT
70776849 ATTCTAAGATTAGTTTTCCTAATTACCAAGGTAGCCTAGCTTTCCATATTCGCATCATTGGGTCA
391 ATTCTAAGATTAGTTTTCCTAATTACCAAGGTAGCCTAGCTTTCCATATTCGCATCATTGGGTCA
70776914 CCCAAACTTCAAATGGCAGGCTTCTTCAACAGTTCTTTGAATCGAGCTAGCTCTCGTGGGTCAAA
456 CCCAAACTTCAAATGGCAGGCTTCTTCAACAGTTCTTTGAATCGAGCTAGCTCTCGTGGGTCAAA
70776979 TGATCCCTATCTAAACGATAGACCTCTATGGGATGCATTTTGTGTTATGGTCACAGGCTCTAAAC
521 TGATCCCTATCTAAACGATAGACCTCTATGGGATGCATTTTGTGTTATGGTCACAGGCTCTAAAC
*
70777044 TGTAACATGTGACACTAAAACTACCTATAGCTTCTGCCTAACCTTAAATGGGAGGATAAATGTGC
586 TGTAACATGTGACACTAAAACTACCTATAGCCTCTGCCTAACCTTAAATGGGAGGATAAATGTGC
*
70777109 TTTAACGCTTTTGAACCCACATCCTCTTGCACTAAATAATGCCAATGCCAATGCCAATGCCAATA
651 TTTAACGCTTTTGAACCCACATCCTCTTGCACTAAATAATGTCAATGCCAATGCCAATGCCAATA
*
70777174 CCAACTAAGCTAAGACTCAATCAACTATTTTTCTCTCTAATATTGCATAAACCTTCATGTCTATA
716 CCAACTAAGCTAAGACTCAATCAACTCTTTTTCTCTCTAATATTGCATAAACCTTCATGTCTATA
*
70777239 TTTCTATATGCCTCTTGGTTCAAAAAAATTTTTCTATACACCTCTATTCTTT
781 TTTCTATATGCCTCTTGGTTCAAAAAAAATTTTCTATACACCTCTATTCTTT
70777291 CTTAGGCGATCATTTAGTTTCAAACATGCCTAAGTCAGCCTAGCCACCAAACAATTGAGGATTTA
1 CTTAGGCGATCATTTAGTTTCAAACATGCCTAAGTCAGCCTAGCCACCAAACAATTGAGGATTTA
70777356 CAAAGAATTCCACTAAAGCACCAAGTTATATAACGGAAGCAACACAAATCAAAAGAAGGCTAAAT
66 CAAAGAATTCCACTAAAGCACCAAGTTATATAACGGAAGCAACACAAATCAAAAGAAGGCTAAAT
*
70777421 GAACAAAAACAGAAAATAATGCACGAGAGGTGTTTGAATAAATGCTCTCAATATCTTCTTATTCA
131 GAACAGAAACAGAAAATAATGCACGAGAGGTGTTTGAATAAATGCTCTCAATATCTTCTTATTCA
*
70777486 CAAAGAATAATGAAACAATGGATGATTTACAAATGATGGGGAAGCTCTCTATTTATAGTTGAGCT
196 TAAAGAATAATGAAACAATGGATGATTTACAAATGATGGGGAAGCTCTCTATTTATAGTTGAGCT
* *
70777551 CCCCCAAAATCGACGATCTATATCAAGTTAAATCGACGGACGATATTAAGCCTATCCCTAAAATT
261 CCCCCAAAATCGACGATCTATATCAAGTTACATCGACGGATGATATTAAGCCTATCCCTAAAATT
*
70777616 AAGGGATTTAAAAGATTTACAATATCAAATCATATCTAATCTTACAAGATATGATTCCCCTCAAT
326 AAGGGATTTAAAAGATTTACAATATCAAATCACATCTAATCTTACAAGATATGATTCCCCTCAAT
70777681 ATTCTAAGATTAGTTTTCCTAATTACCAAGGTAGCCTAGCTTTCCATATTCGCATCATTGGGTCA
391 ATTCTAAGATTAGTTTTCCTAATTACCAAGGTAGCCTAGCTTTCCATATTCGCATCATTGGGTCA
70777746 CCCAAACTTCAAATGGCAGGCTTCTTCAACAGTTCTTTGAATCGAGCTAGCTCTCGTGGGTCAAA
456 CCCAAACTTCAAATGGCAGGCTTCTTCAACAGTTCTTTGAATCGAGCTAGCTCTCGTGGGTCAAA
70777811 TGATCCCTATCTAAACGATAGACCTCTATGGGATGCATTTTGTGTTATGGTCACAGGCTCTAAAC
521 TGATCCCTATCTAAACGATAGACCTCTATGGGATGCATTTTGTGTTATGGTCACAGGCTCTAAAC
*
70777876 TGTAACATGTGACACTAAAACTACCTATAGCCTCTGCCTAACCTTAAATAGGAGGATAAATGTGC
586 TGTAACATGTGACACTAAAACTACCTATAGCCTCTGCCTAACCTTAAATGGGAGGATAAATGTGC
70777941 TTTAACGCTTTTGAACCCACATCCTCTTGCACTAAATAATGTCAATGCCAATGCCAATGCCAATA
651 TTTAACGCTTTTGAACCCACATCCTCTTGCACTAAATAATGTCAATGCCAATGCCAATGCCAATA
70778006 CCAACTAAGCTAAGACTCAATCAACTCTTTTTCTCTCTAATATTGCATAAACCTTCATGTCTATA
716 CCAACTAAGCTAAGACTCAATCAACTCTTTTTCTCTCTAATATTGCATAAACCTTCATGTCTATA
70778071 TTTCTATATGCCTCTTGGTTCAAAAAAAATTTTCTATACACCTCTATTCTTT
781 TTTCTATATGCCTCTTGGTTCAAAAAAAATTTTCTATACACCTCTATTCTTT
70778123 C
1 C
70778124 AATGTTTATT
Statistics
Matches: 1644, Mismatches: 21, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
832 1644 1.00
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.30
Consensus pattern (832 bp):
CTTAGGCGATCATTTAGTTTCAAACATGCCTAAGTCAGCCTAGCCACCAAACAATTGAGGATTTA
CAAAGAATTCCACTAAAGCACCAAGTTATATAACGGAAGCAACACAAATCAAAAGAAGGCTAAAT
GAACAGAAACAGAAAATAATGCACGAGAGGTGTTTGAATAAATGCTCTCAATATCTTCTTATTCA
TAAAGAATAATGAAACAATGGATGATTTACAAATGATGGGGAAGCTCTCTATTTATAGTTGAGCT
CCCCCAAAATCGACGATCTATATCAAGTTACATCGACGGATGATATTAAGCCTATCCCTAAAATT
AAGGGATTTAAAAGATTTACAATATCAAATCACATCTAATCTTACAAGATATGATTCCCCTCAAT
ATTCTAAGATTAGTTTTCCTAATTACCAAGGTAGCCTAGCTTTCCATATTCGCATCATTGGGTCA
CCCAAACTTCAAATGGCAGGCTTCTTCAACAGTTCTTTGAATCGAGCTAGCTCTCGTGGGTCAAA
TGATCCCTATCTAAACGATAGACCTCTATGGGATGCATTTTGTGTTATGGTCACAGGCTCTAAAC
TGTAACATGTGACACTAAAACTACCTATAGCCTCTGCCTAACCTTAAATGGGAGGATAAATGTGC
TTTAACGCTTTTGAACCCACATCCTCTTGCACTAAATAATGTCAATGCCAATGCCAATGCCAATA
CCAACTAAGCTAAGACTCAATCAACTCTTTTTCTCTCTAATATTGCATAAACCTTCATGTCTATA
TTTCTATATGCCTCTTGGTTCAAAAAAAATTTTCTATACACCTCTATTCTTT
Found at i:70778445 original size:139 final size:139
Alignment explanation
Indices: 70778243--70778523 Score: 413
Period size: 139 Copynumber: 2.0 Consensus size: 139
70778233 TTCTATTTAA
* * *
70778243 TTTTCACCTATTTTGGCCCTAAAACTTGCATTGTTTGTAAAATTCCTCCAAAACGGAT-GAAAAA
1 TTTTCACCTATTTTGACCCTAAAACTTGCATTGTTTGTAAAATTCCTCCAAAACAGATAAAAAAA
* *
70778307 TTTAACGCCTATTAATTTTTCTAATGTGGCATATACGTAGATGCCACATCAATAATTAATTAATT
66 ATTAACGCCTATTAATTTTACTAATGTGGCATATACGTAGATGCCACATCAATAATTAATTAA-T
70778372 TTTTTAAAAT
130 TTTTTAAAAT
* * * *
70778382 TTTTTACCTATTTTGACCCTTAAACTTGCATTGTTTGTCAAA-TCACTCCAAAATAGATAAAAAA
1 TTTTCACCTATTTTGACCCTAAAACTTGCATTGTTTGTAAAATTC-CTCCAAAACAGATAAAAAA
* * * *
70778446 AATTAATGTCTATTAATTTTACTAATGTGGCATATACGTGGATGCCACATCAGTAATTAATTAAT
65 AATTAACGCCTATTAATTTTACTAATGTGGCATATACGTAGATGCCACATCAATAATTAATTAAT
70778511 TTTTTAAAAT
130 TTTTTAAAAT
70778521 TTT
1 TTT
70778524 AAAAATTAAA
Statistics
Matches: 127, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
138 2 0.02
139 63 0.50
140 62 0.49
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (139 bp):
TTTTCACCTATTTTGACCCTAAAACTTGCATTGTTTGTAAAATTCCTCCAAAACAGATAAAAAAA
ATTAACGCCTATTAATTTTACTAATGTGGCATATACGTAGATGCCACATCAATAATTAATTAATT
TTTTAAAAT
Found at i:70789743 original size:22 final size:22
Alignment explanation
Indices: 70789699--70789756 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
70789689 CAAAAGAATG
*
70789699 AAATAAATAACATAAAACCATTTA
1 AAATAAAT-A-ATAAAACAATTTA
* *
70789723 AAATAAATAATGAAACAATTTT
1 AAATAAATAATAAAACAATTTA
*
70789745 AAATAAGTAATA
1 AAATAAATAATA
70789757 CATAAAAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 20 0.69
23 1 0.03
24 8 0.28
ACGTcount: A:0.62, C:0.07, G:0.03, T:0.28
Consensus pattern (22 bp):
AAATAAATAATAAAACAATTTA
Found at i:70789967 original size:28 final size:27
Alignment explanation
Indices: 70789919--70789982 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
70789909 AGAAAGTCTA
* *
70789919 AAATAAATAATACGTGAAAAATAAATTT
1 AAATAAATAATACATGAAAAA-AAATAT
*
70789947 AAATAAATAATATAT-ATAAAAAAATAT
1 AAATAAATAATACATGA-AAAAAAATAT
*
70789974 AAAAAAATA
1 AAATAAATA
70789983 GCTTAATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
27 14 0.45
28 17 0.55
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.27
Consensus pattern (27 bp):
AAATAAATAATACATGAAAAAAAATAT
Found at i:70791062 original size:9 final size:9
Alignment explanation
Indices: 70791051--70791117 Score: 98
Period size: 9 Copynumber: 7.4 Consensus size: 9
70791041 TTTTGTTAAA
*
70791051 AATTAACCA
1 AATTAACCG
*
70791060 AATTACCCG
1 AATTAACCG
*
70791069 GATTAACCG
1 AATTAACCG
70791078 AATTAACCG
1 AATTAACCG
70791087 AATTAACCG
1 AATTAACCG
*
70791096 AATTGACCG
1 AATTAACCG
70791105 AATTAACCG
1 AATTAACCG
70791114 AATT
1 AATT
70791118 GAATCACTAC
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.42, C:0.22, G:0.12, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:70791152 original size:17 final size:17
Alignment explanation
Indices: 70791130--70791190 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
70791120 ATCACTACAC
70791130 TACATAATTAAAAATAT
1 TACATAATTAAAAATAT
** * *
70791147 TACATAAGTCTTTGAATTAC
1 TACATAA---TTAAAAATAT
*
70791167 TACATAATTAAAAACAT
1 TACATAATTAAAAATAT
70791184 TACATAA
1 TACATAA
70791191 GTCTTTGAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 19 0.59
20 13 0.41
ACGTcount: A:0.51, C:0.11, G:0.03, T:0.34
Consensus pattern (17 bp):
TACATAATTAAAAATAT
Found at i:70791178 original size:37 final size:37
Alignment explanation
Indices: 70791128--70791249 Score: 185
Period size: 37 Copynumber: 3.3 Consensus size: 37
70791118 GAATCACTAC
*
70791128 ACTACATAATTAAAAATATTACATAAGTCTTTGAATT
1 ACTACATAATTAAAAACATTACATAAGTCTTTGAATT
*
70791165 ACTACATAATTAAAAACATTACATAAGTCTTTGAATC
1 ACTACATAATTAAAAACATTACATAAGTCTTTGAATT
*
70791202 ACTAAATAATTAAAAACATTACATAAGTC-TTGAAATT
1 ACTACATAATTAAAAACATTACATAAGTCTTTG-AATT
70791239 AAC-ACATAATT
1 -ACTACATAATT
70791250 GAAATGTCAG
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
36 3 0.04
37 73 0.94
38 2 0.03
ACGTcount: A:0.48, C:0.13, G:0.05, T:0.34
Consensus pattern (37 bp):
ACTACATAATTAAAAACATTACATAAGTCTTTGAATT
Found at i:70793688 original size:18 final size:20
Alignment explanation
Indices: 70793658--70793702 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
70793648 TGCAAGAAAA
70793658 AAAAT-TATATAATAA-ATT
1 AAAATATATATAATAATATT
70793676 AAAATATAT-TAATAATATT
1 AAAATATATATAATAATATT
70793695 AAACATAT
1 AAA-ATAT
70793703 TTTTATACTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 11 0.46
19 9 0.38
20 4 0.17
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAATATATATAATAATATT
Found at i:70798542 original size:13 final size:13
Alignment explanation
Indices: 70798510--70798543 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
70798500 ATTTGTATTT
* *
70798510 GGTTGGATAATTA
1 GGTTGGGTAAATA
70798523 GGTTGGGTAAATA
1 GGTTGGGTAAATA
70798536 GGTTGGGT
1 GGTTGGGT
70798544 TGGGTTGGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.41, T:0.35
Consensus pattern (13 bp):
GGTTGGGTAAATA
Found at i:70799778 original size:44 final size:44
Alignment explanation
Indices: 70799715--70799911 Score: 150
Period size: 44 Copynumber: 4.5 Consensus size: 44
70799705 TCCACTCCAT
* *
70799715 TGCAACTTTAGAGAGATAAGAATCGTAACTTCAACCTGCCCCAC
1 TGCAACTTTAGGGAGATAAGATTCGTAACTTCAACCTGCCCCAC
* * * * * *
70799759 TGCAACTTTAGGGGGATAAGGTTTG-AGGCTTCAATCTGCTCCAC
1 TGCAACTTTAGGGAGATAAGATTCGTA-ACTTCAACCTGCCCCAC
* * * * * * *
70799803 TTG-AACTTCAAGGAGATAAGATTTAC-TATCTTCGATCTACTCCAC
1 -TGCAACTTTAGGGAGATAAGA-TT-CGTAACTTCAACCTGCCCCAC
*
70799848 TGCAACTTTAGGGAGATAAGACTT-GTAACTTCGACCTGCCCCAC
1 TGCAACTTTAGGGAGATAAGA-TTCGTAACTTCAACCTGCCCCAC
* * *
70799892 TACAACTTCAGGGGGATAAG
1 TGCAACTTTAGGGAGATAAG
70799912 GTCTGTGGCT
Statistics
Matches: 120, Mismatches: 26, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
43 1 0.01
44 82 0.68
45 36 0.30
46 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.27
Consensus pattern (44 bp):
TGCAACTTTAGGGAGATAAGATTCGTAACTTCAACCTGCCCCAC
Found at i:70799946 original size:133 final size:132
Alignment explanation
Indices: 70799703--70800005 Score: 383
Period size: 133 Copynumber: 2.3 Consensus size: 132
70799693 GGAATTGTTT
* * * * *
70799703 GATCCACTCCATTGCAACTTTAGAGAGATAAGAATCGTAACTTCAACCTGCCCCACTGCAACTTT
1 GATCTACTCCACTGCAACTTTAGGGAGATAAGAATCGTAACTTCAACCTGCCCCACTACAACTTC
* * * * *
70799768 AGGGGGATAAGGTTTGAGGCTTCAATCTGCTCCACTTGAACTTCAAGGAGATAAGATTTACTATC
66 AGGGGGATAAGGTCTGAGGCTTCAATCTGATCCACTTCAACTTCAAGGAGATAAGA-TTAATAGC
70799833 TTC
130 TTC
* * *
70799836 GATCTACTCCACTGCAACTTTAGGGAGATAAGACTTGTAACTTCGACCTGCCCCACTACAACTTC
1 GATCTACTCCACTGCAACTTTAGGGAGATAAGAATCGTAACTTCAACCTGCCCCACTACAACTTC
* * *
70799901 AGGGGGATAAGGTCTGTGGCTTCAATTTGATCCA-TTACAACTTCAAGGAGATAAGATTAATGGC
66 AGGGGGATAAGGTCTGAGGCTTCAATCTGATCCACTT-CAACTTCAAGGAGATAAGATTAATAGC
*
70799965 TTT
130 TTC
* * * * *
70799968 AATCTGCTCCACTGCAACATCAGGGAGATAAGATTCGT
1 GATCTACTCCACTGCAACTTTAGGGAGATAAGAATCGT
70800006 CATGATAGAT
Statistics
Matches: 146, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
132 41 0.28
133 105 0.72
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (132 bp):
GATCTACTCCACTGCAACTTTAGGGAGATAAGAATCGTAACTTCAACCTGCCCCACTACAACTTC
AGGGGGATAAGGTCTGAGGCTTCAATCTGATCCACTTCAACTTCAAGGAGATAAGATTAATAGCT
TC
Found at i:70799965 original size:44 final size:44
Alignment explanation
Indices: 70799917--70800002 Score: 109
Period size: 44 Copynumber: 2.0 Consensus size: 44
70799907 ATAAGGTCTG
* * *
70799917 TGGCTTCAATTTGATCCATTACAACTTCAAGGAGATAAGATTAA
1 TGGCTTCAATCTGATCCACTACAACATCAAGGAGATAAGATTAA
* * * *
70799961 TGGCTTTAATCTGCTCCACTGCAACATCAGGGAGATAAGATT
1 TGGCTTCAATCTGATCCACTACAACATCAAGGAGATAAGATT
70800003 CGTCATGATA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (44 bp):
TGGCTTCAATCTGATCCACTACAACATCAAGGAGATAAGATTAA
Found at i:70800100 original size:21 final size:21
Alignment explanation
Indices: 70800071--70800111 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
70800061 GCAGTTTTAA
*
70800071 TCTGTTCCACTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAG
70800092 TCTGCTCCACTGCAACTTCA
1 TCTGCTCCACTGCAACTTCA
70800112 AGGAGATAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.37, G:0.12, T:0.32
Consensus pattern (21 bp):
TCTGCTCCACTGCAACTTCAG
Found at i:70800303 original size:44 final size:44
Alignment explanation
Indices: 70800092--70803241 Score: 304
Period size: 44 Copynumber: 69.7 Consensus size: 44
70800082 GCAACTTCAG
* * * * *
70800092 TCTGCTCCACTGCAACTTCA-AGGAGATAAGACTTGTAACTTAAA
1 TCTGCTCTACTGCAACTTCAGA-GAGATAAGATTTATAGCTTTAA
* * * * * *
70800136 CCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
* * * * *
70800180 TCTGCTCCACTGTAACTTTA-AGGAGATAA-ATTTCGTCATAGTAGATTTGA
1 TCTGCTCTACTGCAACTTCAGA-GAGATAAGA--T--T--TA-TAGCTTTAA
* * *
70800230 TCCGAC-CTGCTGCAACTTCAGAG-GTATAGGATTTATAGCTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* * * *
70800274 TCTGCTCTACTGCAACTTCAGAGAGATAGGATTCACTA-TTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTT-AA
* * * * * * *
70800319 TCTGTTCTGCTGTAACTTCAG-GAAGATACGACTTGTA-ATTTCAA
1 TCTGCTCTACTGCAACTTCAGAG-AGATAAGATTTATAGCTTT-AA
* * ** * * * **
70800363 CCTGCTCCACTATAACTTTAGAGAGATAAG-GTTAGTGGCTTCGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTTAA
* * * * *
70800407 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-----T-ATAGCTTTAA
* * *
70800457 TCCGAC-CTGCTGCAACTTTAGAG-GTATAAGATTTATAGCTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* * ** *
70800501 TCTGCTCTGCTGCAACTTCAGAGATATAAGATTCGCTA-TTTTAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTTAA
* ** * * * *
70800545 GTCTTCTCCGCTGCAACTTCA-AGGAGATACGACTTGTAACTTTAA
1 -TCTGCTCTACTGCAACTTCAGA-GAGATAAGATTTATAGCTTTAA
* * * * *
70800590 CCTGCTAC-ACTGCAACTTTAGGGAGATAAG-GTTAGTGGCTTTAA
1 TCTGCT-CTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTTAA
* * * * *
70800634 TATGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATGGTAGGTTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGA-TT-T-A---TAGCTTTAA
* *
70800684 T-TCGAC-CTACTGTAACTTTAGAG-GTATAAGATTTATAGCTTTAA
1 TCT-G-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* * ** * *
70800728 TTTGCTCTACTGCAACTTCAGAGAGATAGGATTCGCTA-TTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTT-AA
* ** * * * * * * * *
70800773 TCTGTTCCGCTGTAACTTTAGGGAGATACGACTTGTAACTTAAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
* * * * * **
70800817 CCTGCTCCACTGCAACTTTAGGGAGATAAG-GTTAGT-GTCTTCGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAG-CTTTAA
* * * * * *
70800861 TCTGCTCCACTGCAACTTTAGGGAGATAAGATTCACCATGGTAGATTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-----T-ATAGCTTTAA
* *
70800911 TCCGAC-CTGCTGCAACTTCAGAG-GTATAAGATTTATAGCTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* * *
70800955 TCTGCTCTACTGCAACTTCAGAGAAATAAGATTCGT-TA-TTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT--TATAGCTTT-AA
** * * * * * * *
70801000 TC-GTCTCCGCTACAACTTCAGAAAGATACGACTTGTAACTTCAA
1 TCTG-CTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
** * * * * * * * *
70801044 AGTGTTCCACTGTAACTTGAGGGAGATAAGGTTAATGGCTTTAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
* * * * ** *
70801088 TTTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAAATTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-----T-ATAGCTTTAA
* * * * **
70801138 TCCGAC-ATGCTGCAACTTCAGAG-GTATAGGATTTATATTTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* * * * ** * *
70801182 TTTGCTCTGCTGTAACTTCAAAGAGATAAGATTCGCTA-TTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTT-AA
** * * * * * *
70801227 TCTGCTCCGCTGCAACTTCAGGGAGATACGACTTGTAACTTCAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
* ** * * * * *
70801271 CCTATTCCACTGCAACTTTAGGGAGATAAG-GTTAGTGGCTTCT-A
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTT-TAA
* * * * * * *
70801315 CCTGCTCCATTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-----T-ATAGCTTTAA
*
70801365 TCTGAC-CTGCTGCAAC-T--------T--GATTTATAGCTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
* ** * *
70801398 TCTGCTCTACTGTAACTTCAGAGAGATAAGATTCGCTA-TTTTCA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTTAA
* * * * * * * * *
70801442 GCCG-TCTTCGTTGTAACTTTAG-GAAGATAAGAGTTGTAACTTCAA
1 TCTGCTCTAC--TGCAACTTCAGAG-AGATAAGATTTATAGCTTTAA
* * * * *
70801487 -CGTGCTCCACTGTAACTTCAGGGAGATAAG-GTTAGTGGCTTTAA
1 TC-TGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTTAA
* * * * * * *
70801531 TATGCTCCACTGCAACTTTAGGGAGATAAGATTCGCCATGGTAGATTTCA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-----T-ATAGCTTTAA
* * * * *
70801581 TCCGAC-CTGCTGCAACTTCAAAG-GTATAGGATTTATAGCTATAA
1 TCTG-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* * ** *
70801625 TTTGCTCTACTGCAACTTCAGATAGATAAGATTCGCTA-TTTTCAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTT-AA
* ** * * * *
70801670 TCTACTCCGCTGCAACTTCAGAGAGATACA-ACTTGTAACTTCAA
1 TCTGCTCTACTGCAACTTCAGAGAGATA-AGATTTATAGCTTTAA
* * * * * * * *
70801714 CCTGCTCCACTACAACTTTAGGGAGATAAG-GTTAGTGGCTTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTTAA
* * * * * * *
70801758 TTTGTTCCACTGCAACTTCAGGGAGATAAG-GTTAGT-GGTTTCGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTT-AA
* * * * * *
70801802 TCTGTTCCACTACAACTTCAGGGAGATAAGATTCGCCATGATAGATTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-----T-ATAGCTTTAA
* * * * *
70801852 TCCGAC-CTGCTACAACTTCAGAG-TATAGGATTTATAGCTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
* * * *
70801895 TCTGCTCTACTGCAACTTCAGAGAGATAGGATTCACTA-TTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTT-AA
* ** * * * * * * **
70801940 TCTGATCCGCCGTAACTTTAGGGAGATAAG-GTTAGTGGCTTCGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTTAA
* * * * **
70801984 TCTGCT-TCATTGCAACTTCAGGGAGATAAGATTCACCATGGTAGATTTGG
1 TCTGCTCT-ACTGCAACTTCAGAGAGATAAGATT-----T-ATAGCTTTAA
* * *
70802034 TCTGAC-CTGCTACAACTTCAGAG-GTATAGGATTTATAGCTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* * ** *
70802078 TCTGTTCTATTGCAACTTCAGAGAGATAAGATTCGCTA-CTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTT-AA
** * * * * * *
70802123 T-TGTCTCCGCTGTAACTTTAG-GAAGATACGACTTGTAACTTTAA
1 TCTG-CTCTACTGCAACTTCAGAG-AGATAAGATTTATAGCTTTAA
* * * *
70802167 -CGTGCTCCACTGCAACTTCAG-GAAGATAAG-GTTAGTGGCTTCAA
1 TC-TGCTCTACTGCAACTTCAGAG-AGATAAGATTTA-TAGCTTTAA
* * * * * *
70802211 TATGCTCCATTGCAACTTCAGGGAGATAAGATTCTCAATAGTAGATTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGA-T-T---TA-TAGCTTTAA
** * * *
70802261 TCCAAC-CTGCTGTAACTTCAGAG-GTATAGGATTTATAGCTTTAA
1 T-CTGCTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* ** * *
70802305 TCTGCTCTACTGAAACTTCAGAGAGATAAGATTCGCTA-TTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTT-AA
** ** * * * * * *
70802350 TCTGCTCCGCTATAACTTCAGGGAGATACGACTTGTAACTTCAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
* * * * * * *
70802394 -CTTGCTCCACTGTAACTTTAGGGAGATACG-GTTAGTGGCTTCT-A
1 TC-TGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTT-TAA
* * * * * *
70802438 TCTGCTCCACTGCAACTTTAGTGAGATAAGATTCGCCATGGTAGATTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-----T-ATAGCTTTAA
* *
70802488 TCCGAC-CTGCTGCAACTTCAGAG-GTATAAGATTTATAGCTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* * ** * *
70802532 TCTGTTCTGCTGCAACTTCAGAGAGATAAGATTCGCTA-TTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTT-AA
* ** * * * * * *
70802577 TCTTCTCCGCTGCAACTTTA-AGGAGATACGACTTGTAACTTCAA
1 TCTGCTCTACTGCAACTTCAGA-GAGATAAGATTTATAGCTTTAA
* * * * * **
70802621 CCTGCTAC-ACTGCAACTTTAGGGAGATAAG-GTTAGTGGCTTCGA
1 TCTGCT-CTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTTTAA
* * * * * *
70802665 TCTGCTCCACTGTAACTTTA-AGGAGATAAGATTCGCCATGGTAGATTTGA
1 TCTGCTCTACTGCAACTTCAGA-GAGATAAGATT-----T-ATAGCTTTAA
*
70802715 T-TCGAC-CTGCTGCAACTTCAGAG-GTATAAGATTTATAGCTTTAA
1 TCT-G-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* ** ** *
70802759 TCTGCTCTACT-CTAACTTCAGAGAGATAGGATTCGCTATTTTTAG
1 TCTGCTCTACTGC-AACTTCAGAGAGATAAGATT-TATAGCTTTAA
* * * * * * *
70802804 T-TGTCTCTGCTGTAACTTTAG-GAAGATACGACTTGTAACTTTAA
1 TCTG-CTCTACTGCAACTTCAGAG-AGATAAGATTTATAGCTTTAA
* * * *
70802848 -CGTGCTCCACTGCAACTTCAG-GAAGATAAG-GTTAGTGGCTTCAA
1 TC-TGCTCTACTGCAACTTCAGAG-AGATAAGATTTA-TAGCTTTAA
* * * * * *
70802892 TATGCTCCATTGCAACTTCAGGGAGATAAGATTTGCCATAGTAGATTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGA-TT----TA-TAGCTTTAA
** * * *
70802942 TCCAAC-CTGCTGTAACTTCAGAG-GTATAGGATTTATAGCTTTAA
1 T-CTGCTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* ** * *
70802986 TCTGCTCTACTGCAACTTTAGAGAGATAAGATTCGCTA-TTTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-TATAGCTTT-AA
** ** * * * * * *
70803031 TCTGCTCCGCTATAACTTCAGGGAGATACGACTTGTAACTTCAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
* * * * *
70803075 -CTTGCTCCACTGCAACTTTAGGGAGATAAG-GTTAGTGGCTTCT-A
1 TC-TGCTCTACTGCAACTTCAGAGAGATAAGATTTA-TAGCTT-TAA
* * * * *
70803119 TCTGCTCTACTGCAACTTTAGTGAGATAAGATTCGCCATGGTAGATTTGA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATT-----T-ATAGCTTTAA
* *
70803169 TCCGAC-CTGCTGCAACTTCAGAG-GTATAAGATTTATAGCTTTAA
1 TCTG-CTCTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAA
* *
70803213 TCTACTCTGCTGCAACTTCAGAGAGATAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAA
70803242 TATTCGCTAT
Statistics
Matches: 2221, Mismatches: 617, Indels: 536
0.66 0.18 0.16
Matches are distributed among these distances:
32 1 0.00
33 19 0.01
34 2 0.00
39 4 0.00
41 1 0.00
42 2 0.00
43 76 0.03
44 1242 0.56
45 431 0.19
46 7 0.00
47 5 0.00
48 3 0.00
49 32 0.01
50 373 0.17
51 23 0.01
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (44 bp):
TCTGCTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAA
Found at i:70800482 original size:227 final size:227
Alignment explanation
Indices: 70800087--70803398 Score: 4164
Period size: 227 Copynumber: 14.6 Consensus size: 227
70800077 CCACTGCAAC
* * * *
70800087 TTCAGTCTGCTCCACTGCAACTTCAAGG-AGATAAGACTTGTAACTTAAACCTGCTCCACTGCAA
1 TTCAGTCTGTTCCGCTGCAACTTC-AGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAA
* * * * * *
70800151 CTTCAGGGAGATAAGGTTTGTGGCTTTAATCTGCTCCACTGTAACTTTAAGGAGATAA-ATTTCG
65 CTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTCG
* * *
70800215 TCATAGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGCT
129 CCATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCT
* *
70800280 CTACTGCAACTTCAGAGAGATAGGATTCACTATT
194 CTACTGCAACTTCAGAGAGATAAGATTCGCTATT
* * * **
70800314 TTCAGTCTGTTCTGCTGTAACTTCAGGAAGATACGACTTGTAATTTCAACCTGCTCCACTATAAC
1 TTCAGTCTGTTCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAAC
* *
70800379 TTTAGAGAGATAAGGTTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCC
66 TTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCC
*
70800444 ATGGTAGATTTGATCCGACCTGCTGCAACTTTAGAGGTATAAGATTTATAGCTTTAATCTGCTCT
131 ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCT
* *
70800509 GCTGCAACTTCAGAGATATAAGATTCGCTATT
196 ACTGCAACTTCAGAGAGATAAGATTCGCTATT
* * *
70800541 TTAAGTCT-TCTCCGCTGCAACTTCAAGG-AGATACGACTTGTAACTTTAACCTGCTACACTGCA
1 TTCAGTCTGT-TCCGCTGCAACTTC-AGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCA
* * *
70800604 ACTTTAGGGAGATAAGGTTAGTGGCTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTG
64 ACTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCG
* * * * * * *
70800669 TCATGGTAGGTTTGATTCGACCTACTGTAACTTTAGAGGTATAAGATTTATAGCTTTAATTTGCT
129 CCATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCT
*
70800734 CTACTGCAACTTCAGAGAGATAGGATTCGCTATT
194 CTACTGCAACTTCAGAGAGATAAGATTCGCTATT
* * * *
70800768 TTCAGTCTGTTCCGCTGTAACTTTAGGGAGATACGACTTGTAACTTAAACCTGCTCCACTGCAAC
1 TTCAGTCTGTTCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAAC
* * * *
70800833 TTTAGGGAGATAAGGTTAGTGTCTTCGATCTGCTCCACTGCAACTTTAGGGAGATAAGATTCACC
66 TTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCC
70800898 ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCT
131 ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCT
* *
70800963 ACTGCAACTTCAGAGAAATAAGATTCGTTATT
196 ACTGCAACTTCAGAGAGATAAGATTCGCTATT
* * ** * *
70800995 TTCAGTC-GTCTCCGCTACAACTTCAGAAAGATACGACTTGTAACTTCAAAGTGTTCCACTGTAA
1 TTCAGTCTGT-TCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAA
* * * *
70801059 CTTGAGGGAGATAAGGTTAATGGCTTTAATTTGCTCCACTGCAACTTCAGGGAGATAAGATTCGC
65 CTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGC
* * * ** *
70801124 CATGGTAAATTTGATCCGACATGCTGCAACTTCAGAGGTATAGGATTTATATTTTTAATTTGCTC
130 CATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTC
* * *
70801189 TGCTGTAACTTCAAAGAGATAAGATTCGCTATT
195 TACTGCAACTTCAGAGAGATAAGATTCGCTATT
* * **
70801222 TTCAGTCTGCTCCGCTGCAACTTCAGGGAGATACGACTTGTAACTTCAACCTATTCCACTGCAAC
1 TTCAGTCTGTTCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAAC
* * *
70801287 TTTAGGGAGATAAGGTTAGTGGCTTCTACCTGCTCCATTGCAACTTCAGGGAGATAAGATTCGCC
66 TTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCC
*
70801352 ATGGTAGATTTGATCTGACCTGCTGCAA---C-----T-T--GATTTATAGCTTTAATCTGCTCT
131 ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCT
*
70801406 ACTGTAACTTCAGAGAGATAAGATTCGCTATT
196 ACTGCAACTTCAGAGAGATAAGATTCGCTATT
* * * * * * * * *
70801438 TTCAG-CCGTCTTCGTTGTAACTTTAGGAAGATAAGAGTTGTAACTTCAACGTGCTCCACTGTAA
1 TTCAGTCTGT-TCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAA
* * * *
70801502 CTTCAGGGAGATAAGGTTAGTGGCTTTAATATGCTCCACTGCAACTTTAGGGAGATAAGATTCGC
65 CTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGC
* * * * *
70801567 CATGGTAGATTTCATCCGACCTGCTGCAACTTCAAAGGTATAGGATTTATAGCTATAATTTGCTC
130 CATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTC
*
70801632 TACTGCAACTTCAGATAGATAAGATTCGCTATT
195 TACTGCAACTTCAGAGAGATAAGATTCGCTATT
* ** * *
70801665 TTCAATCTACTCCGCTGCAACTTCA-GAGAGATACAACTTGTAACTTCAACCTGCTCCACTACAA
1 TTCAGTCTGTTCCGCTGCAACTTCAGGA-AGATACGACTTGTAACTTCAACCTGCTCCACTGCAA
** * * * *
70801729 CTTTAGGGAGATAAGGTTAGTGGCTTTGATTTGTTCCACTGCAACTTCAGGGAGATAAGGTTAG-
65 CTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGC
* * * * * * * *
70801793 --TGGT---TTCGATCTGTTCC-ACTACAACTTCAG-GGAGATAAGATTCGCCATGATAGATTTG
130 CATGGTAGATTTGATCCG-ACCTGCTGCAACTTCAGAGG-TATAAGATT-----T-ATAGCTTTA
* * * * * ** *
70801851 ATCCGAC-CTGCTACAACTTCAGAG-TATAGGATT-TATAGCT
187 ATCTG-CTCTACTGCAACTTCAGAGAGATAAGATTCGCTA-TT
* * ** * * ** ** * * * *
70801891 TT-AATCTGCTCTACTGCAACTTCA-GAGAGATAGGA-TTCACTATTTTCAGTCTGATCCGCCGT
1 TTCAGTCTGTTCCGCTGCAACTTCAGGA-AGATACGACTT--GTAACTTCAACCTGCTCCACTGC
* * *
70801953 AACTTTAGGGAGATAAGGTTAGTGGCTTCGATCTGCTTCATTGCAACTTCAGGGAGATAAGATTC
63 AACTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTC
* * * * * *
70802018 ACCATGGTAGATTTGGTCTGACCTGCTACAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGT
128 GCCATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGC
* *
70802083 TCTATTGCAACTTCAGAGAGATAAGATTCGCTACT
193 TCTACTGCAACTTCAGAGAGATAAGATTCGCTATT
* * * *
70802118 TTCAGT-TGTCTCCGCTGTAACTTTAGGAAGATACGACTTGTAACTTTAACGTGCTCCACTGCAA
1 TTCAGTCTGT-TCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAA
* * * * *
70802182 CTTCAGGAAGATAAGGTTAGTGGCTTCAATATGCTCCATTGCAACTTCAGGGAGATAAGATTCTC
65 CTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGC
* * * * *
70802247 AATAGTAGATTTGATCCAACCTGCTGTAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGCTC
130 CATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTC
*
70802312 TACTGAAACTTCAGAGAGATAAGATTCGCTATT
195 TACTGCAACTTCAGAGAGATAAGATTCGCTATT
* ** * * *
70802345 TTCAGTCTGCTCCGCTATAACTTCAGGGAGATACGACTTGTAACTTCAACTTGCTCCACTGTAAC
1 TTCAGTCTGTTCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAAC
* * * *
70802410 TTTAGGGAGATACGGTTAGTGGCTTCTATCTGCTCCACTGCAACTTTAGTGAGATAAGATTCGCC
66 TTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCC
*
70802475 ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGTTCT
131 ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCT
*
70802540 GCTGCAACTTCAGAGAGATAAGATTCGCTATT
196 ACTGCAACTTCAGAGAGATAAGATTCGCTATT
* *
70802572 TTCAGTCT-TCTCCGCTGCAACTTTAAGG-AGATACGACTTGTAACTTCAACCTGCTACACTGCA
1 TTCAGTCTGT-TCCGCTGCAAC-TTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCA
* * * *
70802635 ACTTTAGGGAGATAAGGTTAGTGGCTTCGATCTGCTCCACTGTAACTTTAAGGAGATAAGATTCG
64 ACTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCG
*
70802700 CCATGGTAGATTTGATTCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCT
129 CCATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCT
*
70802765 CTACT-CTAACTTCAGAGAGATAGGATTCGCTATT
194 CTACTGC-AACTTCAGAGAGATAAGATTCGCTATT
* * * * * *
70802799 TTTAGT-TGTCTCTGCTGTAACTTTAGGAAGATACGACTTGTAACTTTAACGTGCTCCACTGCAA
1 TTCAGTCTGT-TCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAA
* * * * *
70802863 CTTCAGGAAGATAAGGTTAGTGGCTTCAATATGCTCCATTGCAACTTCAGGGAGATAAGATTTGC
65 CTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGC
* * * *
70802928 CATAGTAGATTTGATCCAACCTGCTGTAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGCTC
130 CATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTC
*
70802993 TACTGCAACTTTAGAGAGATAAGATTCGCTATT
195 TACTGCAACTTCAGAGAGATAAGATTCGCTATT
* ** * *
70803026 TTCAGTCTGCTCCGCTATAACTTCAGGGAGATACGACTTGTAACTTCAACTTGCTCCACTGCAAC
1 TTCAGTCTGTTCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAAC
* * * *
70803091 TTTAGGGAGATAAGGTTAGTGGCTTCTATCTGCTCTACTGCAACTTTAGTGAGATAAGATTCGCC
66 TTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCC
*
70803156 ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTACTCT
131 ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCT
* *
70803221 GCTGCAACTTCAGAGAGATAATATTCGCTATT
196 ACTGCAACTTCAGAGAGATAAGATTCGCTATT
* *
70803253 TTTAGTCT-TCTCCGCTGCAACTTCAAGG-AGATACGACTTGTAACTTCAACCTGCTACACTGCA
1 TTCAGTCTGT-TCCGCTGCAACTTC-AGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCA
* * *
70803316 ACTTTAGGGAGATAAGGTTAGTGGCTTCGATCTGCTCCACTGTAACTTCAAGGAGATAAGATTCG
64 ACTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCG
70803381 CCATGGTAGATTTGATCC
129 CCATGGTAGATTTGATCC
70803399 ATTGCTACCT
Statistics
Matches: 2661, Mismatches: 365, Indels: 118
0.85 0.12 0.04
Matches are distributed among these distances:
215 2 0.00
216 183 0.07
218 1 0.00
219 2 0.00
220 2 0.00
221 23 0.01
222 2 0.00
224 8 0.00
225 31 0.01
226 125 0.05
227 2201 0.83
228 43 0.02
229 8 0.00
231 2 0.00
232 26 0.01
233 2 0.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (227 bp):
TTCAGTCTGTTCCGCTGCAACTTCAGGAAGATACGACTTGTAACTTCAACCTGCTCCACTGCAAC
TTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCC
ATGGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCT
ACTGCAACTTCAGAGAGATAAGATTCGCTATT
Found at i:70801976 original size:182 final size:183
Alignment explanation
Indices: 70801771--70802150 Score: 577
Period size: 182 Copynumber: 2.1 Consensus size: 183
70801761 GTTCCACTGC
* *
70801771 AACTTCAGGGAGATAAGGTTAGTGGTTTCGATCTG-TTCCACTACAACTTCAGGGAGATAAGATT
1 AACTTTAGGGAGATAAGGTTAGTGGCTTCGATCTGCTT-CACTACAACTTCAGGGAGATAAGATT
*
70801835 CGCCATGATAGATTTGATCCGACCTGCTACAACTTCAGA-GTATAGGATTTATAGCTTTAATCTG
65 CACCATGATAGATTTGATCCGACCTGCTACAACTTCAGAGGTATAGGATTTATAGCTTTAATCTG
* *
70801899 CTCTACTGCAACTTCAGAGAGATAGGATTCACTATTTTCAGTCTG-ATCCGCCGT
130 CTCTACTGCAACTTCAGAGAGATAAGATTCACTACTTTCAGT-TGTATCCGCCGT
* *
70801953 AACTTTAGGGAGATAAGGTTAGTGGCTTCGATCTGCTTCATTGCAACTTCAGGGAGATAAGATTC
1 AACTTTAGGGAGATAAGGTTAGTGGCTTCGATCTGCTTCACTACAACTTCAGGGAGATAAGATTC
* * * *
70802018 ACCATGGTAGATTTGGTCTGACCTGCTACAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGT
66 ACCATGATAGATTTGATCCGACCTGCTACAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGC
* * * *
70802083 TCTATTGCAACTTCAGAGAGATAAGATTCGCTACTTTCAGTTGTCTCCGCTGT
131 TCTACTGCAACTTCAGAGAGATAAGATTCACTACTTTCAGTTGTATCCGCCGT
*
70802136 AACTTTAGGAAGATA
1 AACTTTAGGGAGATA
70802151 CGACTTGTAA
Statistics
Matches: 179, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
182 94 0.53
183 85 0.47
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (183 bp):
AACTTTAGGGAGATAAGGTTAGTGGCTTCGATCTGCTTCACTACAACTTCAGGGAGATAAGATTC
ACCATGATAGATTTGATCCGACCTGCTACAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGC
TCTACTGCAACTTCAGAGAGATAAGATTCACTACTTTCAGTTGTATCCGCCGT
Found at i:70802183 original size:183 final size:182
Alignment explanation
Indices: 70801797--70802196 Score: 527
Period size: 183 Copynumber: 2.2 Consensus size: 182
70801787 GGTTAGTGGT
* * * *
70801797 TTCGATCTGTTCCACTACAACTTCAGGGAGATAAGATTCGCCATGATAGATTTGATCCGACCTGC
1 TTCGAACTGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAGATTTGATCCGACCTGC
*
70801862 TACAACTTCAGAGTATAGGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAGGAT
66 TACAACTTCAGAGTATAGGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGAT
* * * **
70801927 TCACTATTTTCAGTCTGATCCGCCGTAACTTTAGGGAGATAAGGTTAGTGGC
131 TCACTACTTTCAGTCTGATCCGCCGTAACTTTAGGAAGATAAGCTTAGTAAC
* * * * * *
70801979 TTCGATCTGCTTCATTGCAACTTCAGGGAGATAAGATTCACCATGGTAGATTTGGTCTGACCTGC
1 TTCGAACTGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAGATTTGATCCGACCTGC
* *
70802044 TACAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGTTCTATTGCAACTTCAGAGAGATAAGA
66 TACAACTTCAGA-GTATAGGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGA
* * * *
70802109 TTCGCTACTTTCAGT-TGTCTCCGCTGTAACTTTAGGAAGATACGACTT-GTAAC
130 TTCACTACTTTCAGTCTG-ATCCGCCGTAACTTTAGGAAGATAAG-CTTAGTAAC
* *
70802162 TT-TAACGTGCTCCACTGCAACTTCAGGAAGATAAG
1 TTCGAAC-TGCTCCACTGCAACTTCAGGGAGATAAG
70802197 GTTAGTGGCT
Statistics
Matches: 189, Mismatches: 25, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
182 73 0.39
183 114 0.60
184 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (182 bp):
TTCGAACTGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAGATTTGATCCGACCTGC
TACAACTTCAGAGTATAGGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGAT
TCACTACTTTCAGTCTGATCCGCCGTAACTTTAGGAAGATAAGCTTAGTAAC
Found at i:70808611 original size:29 final size:28
Alignment explanation
Indices: 70808562--70808619 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 28
70808552 TTTTAATATC
70808562 ATTTATAAAAAAAATAAAATACATATAAAT
1 ATTTATAAAAAAAATAAAATA-AT-TAAAT
*
70808592 ATTT-TAAAAATAAAT-GAATAATTAAAT
1 ATTTATAAAAA-AAATAAAATAATTAAAT
70808619 A
1 A
70808620 ATATTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
27 6 0.23
28 2 0.08
29 10 0.38
30 8 0.31
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (28 bp):
ATTTATAAAAAAAATAAAATAATTAAAT
Found at i:70810581 original size:15 final size:14
Alignment explanation
Indices: 70810550--70810591 Score: 50
Period size: 15 Copynumber: 3.0 Consensus size: 14
70810540 TTGCTAAATT
70810550 ATTT-ATTTATTTA
1 ATTTGATTTATTTA
*
70810563 ATTTGATTTGATTTC
1 ATTTGATTT-ATTTA
*
70810578 ATTTGATTTTTTTA
1 ATTTGATTTATTTA
70810592 TCTTAATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 4 0.17
14 7 0.29
15 13 0.54
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.67
Consensus pattern (14 bp):
ATTTGATTTATTTA
Found at i:70811173 original size:14 final size:16
Alignment explanation
Indices: 70811144--70811178 Score: 56
Period size: 14 Copynumber: 2.3 Consensus size: 16
70811134 AATTAGTCGG
70811144 TAAAAGTAATAATAAA
1 TAAAAGTAATAATAAA
70811160 TAAAA-TAA-AATAAA
1 TAAAAGTAATAATAAA
70811174 TAAAA
1 TAAAA
70811179 AGAATCCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 11 0.58
15 3 0.16
16 5 0.26
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (16 bp):
TAAAAGTAATAATAAA
Found at i:70823055 original size:47 final size:47
Alignment explanation
Indices: 70822990--70823490 Score: 669
Period size: 47 Copynumber: 10.4 Consensus size: 47
70822980 CAGCCAAGAG
* *
70822990 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
70823037 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
70823084 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
70823131 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAA
1 AGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AA
* *
70823181 GTGTATGTGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 ----A---G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
70823237 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
70823284 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
70823331 AGTGTATATGTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
70823378 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
70823425 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
70823472 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
70823491 TCCCGAAAGG
Statistics
Matches: 414, Mismatches: 28, Indels: 24
0.89 0.06 0.05
Matches are distributed among these distances:
47 329 0.79
49 38 0.09
50 2 0.00
52 1 0.00
54 1 0.00
56 2 0.00
57 37 0.09
59 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:70823665 original size:37 final size:37
Alignment explanation
Indices: 70823609--70823687 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70823599 CCGAGCTCTA
* * *
70823609 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
70823646 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
70823683 AAGAC
1 AAGAC
70823688 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:70825587 original size:43 final size:43
Alignment explanation
Indices: 70825539--70825727 Score: 351
Period size: 43 Copynumber: 4.4 Consensus size: 43
70825529 TTGGTTTTCA
*
70825539 GCACTAAGTGTGCGGGCAATAAGTGTTCGCGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
70825582 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
* *
70825625 GCACTAAGTGTGCGGGCAATAGGTGTTCGCGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
70825668 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
70825711 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
70825728 TTGAAATGCA
Statistics
Matches: 141, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 141 1.00
ACGTcount: A:0.21, C:0.15, G:0.37, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:70825747 original size:29 final size:29
Alignment explanation
Indices: 70825712--70825782 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
70825702 GTGAGATTGG
* *
70825712 CACTAAGTGTGCGGGCTTGAAA-TGCATGA
1 CACTAAGTGTGCGAG-TTGAAAGTACATGA
* *
70825741 CACTAAGTGTGCGAGTTTAAAGTACATGG
1 CACTAAGTGTGCGAGTTGAAAGTACATGA
70825770 CACTAAGTGTGCG
1 CACTAAGTGTGCG
70825783 TGGTTGATTA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 5 0.14
29 32 0.86
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (29 bp):
CACTAAGTGTGCGAGTTGAAAGTACATGA
Found at i:70826216 original size:40 final size:40
Alignment explanation
Indices: 70826093--70826408 Score: 368
Period size: 40 Copynumber: 7.9 Consensus size: 40
70826083 TTGAATGATG
** *
70826093 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* * ** * * *
70826133 TCCGGACTAAGACCCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TATA
*
70826173 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
70826213 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
70826253 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
70826293 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * *
70826333 TCCGTGCTAAACCCCGAAGAGCATTCATGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
70826373 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
70826409 CGTGTATTCG
Statistics
Matches: 242, Mismatches: 32, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
40 224 0.93
41 18 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:70829993 original size:47 final size:47
Alignment explanation
Indices: 70829928--70830358 Score: 664
Period size: 47 Copynumber: 9.0 Consensus size: 47
70829918 CAGCCAAGAG
* * *
70829928 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGACTGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
70829975 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
70830022 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
70830069 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
70830118 AGTGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
70830169 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
70830216 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
70830263 AGTGTATATGTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
70830310 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
70830357 AG
1 AG
70830359 GTAATGGCCG
Statistics
Matches: 360, Mismatches: 18, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
47 275 0.76
49 41 0.11
51 40 0.11
53 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:70830365 original size:28 final size:28
Alignment explanation
Indices: 70830332--70830386 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
70830322 TGATAAGGCC
70830332 TAATGGCCGATGCGATGAATGTGAAAGG
1 TAATGGCCGATGCGATGAATGTGAAAGG
*
70830360 TAATGGCCGATGTGATGAATGTGAAAG
1 TAATGGCCGATGCGATGAATGTGAAAG
70830387 TGTATATATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.33, C:0.09, G:0.35, T:0.24
Consensus pattern (28 bp):
TAATGGCCGATGCGATGAATGTGAAAGG
Found at i:70830429 original size:75 final size:75
Alignment explanation
Indices: 70830285--70830433 Score: 217
Period size: 75 Copynumber: 2.0 Consensus size: 75
70830275 TAATAAGGCC
* * * * *
70830285 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCCACGCAATGA
70830350 ATGTGAAAGG
66 ATGTGAAAGG
* * * *
70830360 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCCACGTAATGG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCCACGCAATGA
70830425 ATGTGAAAG
66 ATGTGAAAG
70830434 TGCATAAATG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.31, C:0.11, G:0.33, T:0.26
Consensus pattern (75 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCCACGCAATGA
ATGTGAAAGG
Found at i:70830625 original size:37 final size:37
Alignment explanation
Indices: 70830569--70830647 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70830559 CCGAGCTCTA
* * *
70830569 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
70830606 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
70830643 AAGAC
1 AAGAC
70830648 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:70832622 original size:26 final size:26
Alignment explanation
Indices: 70832586--70832639 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
70832576 TTTACATCTA
70832586 ACTGCTCAAGCTCCAAACCATGCATG
1 ACTGCTCAAGCTCCAAACCATGCATG
70832612 ACTGCTCAAGCTCCAAACCATGCATG
1 ACTGCTCAAGCTCCAAACCATGCATG
70832638 AC
1 AC
70832640 CATAATACCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.31, C:0.35, G:0.15, T:0.19
Consensus pattern (26 bp):
ACTGCTCAAGCTCCAAACCATGCATG
Found at i:70835072 original size:26 final size:26
Alignment explanation
Indices: 70835043--70835149 Score: 187
Period size: 26 Copynumber: 4.1 Consensus size: 26
70835033 TGATACAAAT
70835043 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
70835069 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
70835095 TGATAACGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70835121 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70835147 TGA
1 TGA
70835150 AATTTTATTA
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:70840483 original size:19 final size:20
Alignment explanation
Indices: 70840433--70840475 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
70840423 AAAAGCTAGA
*
70840433 AAAAACTAAAA-ATTTAAAT
1 AAAAACTAAAATAATTAAAT
70840452 AAAAACTAAAATAATTAAA-
1 AAAAACTAAAATAATTAAAT
70840471 AAAAA
1 AAAAA
70840476 GTTAAATAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (20 bp):
AAAAACTAAAATAATTAAAT
Found at i:70843431 original size:25 final size:27
Alignment explanation
Indices: 70843394--70843447 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
70843384 TCAAACATGC
70843394 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
70843420 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
70843446 AT
1 AT
70843448 AACAGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:70844953 original size:26 final size:26
Alignment explanation
Indices: 70844923--70845030 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
70844913 TGAAATTCCC
70844923 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
70844949 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
70844975 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
70845001 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
70845027 ATCA
1 ATCA
70845031 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:70848132 original size:15 final size:15
Alignment explanation
Indices: 70848112--70848141 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70848102 CATTTTATTT
*
70848112 ATATTAGGATAATTA
1 ATATTAAGATAATTA
70848127 ATATTAAGATAATTA
1 ATATTAAGATAATTA
70848142 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:70848169 original size:27 final size:26
Alignment explanation
Indices: 70848108--70848170 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
70848098 ACTCCATTTT
70848108 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
70848135 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
70848163 ATTTTATT
1 ATTTTATT
70848171 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:70848938 original size:18 final size:19
Alignment explanation
Indices: 70848910--70848952 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
70848900 ATTTTTCCTC
70848910 ATTTCAATTTCTGC-AATTT-
1 ATTT-AATTTC-GCAAATTTA
70848929 ATTTAATTTCGCAAATTTA
1 ATTTAATTTCGCAAATTTA
70848948 ATTTA
1 ATTTA
70848953 CTTTAAATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 2 0.09
18 11 0.50
19 9 0.41
ACGTcount: A:0.33, C:0.12, G:0.05, T:0.51
Consensus pattern (19 bp):
ATTTAATTTCGCAAATTTA
Found at i:70849117 original size:12 final size:12
Alignment explanation
Indices: 70849100--70849132 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
70849090 CTACTTCCCA
70849100 TTTACTATTATT
1 TTTACTATTATT
70849112 TTTACTATTATT
1 TTTACTATTATT
70849124 TTTACTATT
1 TTTACTATT
70849133 TTCCAAGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTACTATTATT
Found at i:70851931 original size:15 final size:14
Alignment explanation
Indices: 70851911--70851957 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 14
70851901 GCAACCCAAT
70851911 TTTTATTTTTATTTA
1 TTTTATTTTTA-TTA
*
70851926 TTTTA-TCTTATTA
1 TTTTATTTTTATTA
70851939 TTTTATTATTTATTA
1 TTTTATT-TTTATTA
70851954 TTTT
1 TTTT
70851958 CAGAAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 8 0.29
14 5 0.18
15 15 0.54
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTATTTTTATTA
Found at i:70853532 original size:15 final size:15
Alignment explanation
Indices: 70853512--70853541 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70853502 CATTTTATTT
*
70853512 ATATTAGGATAATTA
1 ATATTAAGATAATTA
70853527 ATATTAAGATAATTA
1 ATATTAAGATAATTA
70853542 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:70853569 original size:27 final size:26
Alignment explanation
Indices: 70853508--70853570 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
70853498 ACTCCATTTT
70853508 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
70853535 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
70853563 ATTTTATT
1 ATTTTATT
70853571 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:70854337 original size:18 final size:19
Alignment explanation
Indices: 70854309--70854351 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
70854299 ATTTTTCCTC
70854309 ATTTCAATTTCTGC-AATTT-
1 ATTT-AATTTC-GCAAATTTA
70854328 ATTTAATTTCGCAAATTTA
1 ATTTAATTTCGCAAATTTA
70854347 ATTTA
1 ATTTA
70854352 CTTTAAATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 2 0.09
18 11 0.50
19 9 0.41
ACGTcount: A:0.33, C:0.12, G:0.05, T:0.51
Consensus pattern (19 bp):
ATTTAATTTCGCAAATTTA
Found at i:70858509 original size:19 final size:19
Alignment explanation
Indices: 70858485--70858533 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
70858475 AATTGTTGTT
*
70858485 TTTTTTTTCTGTTTTCTTG-
1 TTTTTTTT-TATTTTCTTGC
70858504 TTTTTTTATTATTTTCTTGC
1 TTTTTTT-TTATTTTCTTGC
*
70858524 TATTTTTTTA
1 TTTTTTTTTA
70858534 AATTTTTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.08, C:0.08, G:0.06, T:0.78
Consensus pattern (19 bp):
TTTTTTTTTATTTTCTTGC
Found at i:70861956 original size:3 final size:3
Alignment explanation
Indices: 70861950--70861980 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
70861940 TTTTTCTTTC
70861950 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
70861981 AGCAGCCTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:70862649 original size:17 final size:18
Alignment explanation
Indices: 70862629--70862663 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
70862619 AATTTTTTTC
70862629 CTAAATTCTATTT-TTAT
1 CTAAATTCTATTTATTAT
*
70862646 CTAAATTTTATTTATTAT
1 CTAAATTCTATTTATTAT
70862664 TATTTATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (18 bp):
CTAAATTCTATTTATTAT
Found at i:70867191 original size:18 final size:19
Alignment explanation
Indices: 70867169--70867221 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
70867159 ATTTTTTTAA
70867169 AAAAAGTATAAAATTTATT
1 AAAAAGTATAAAATTTATT
* **
70867188 AAAAA-TTTAAAAAATATT
1 AAAAAGTATAAAATTTATT
70867206 AAAAAGTATTAAAATT
1 AAAAAGTA-TAAAATT
70867222 ATAAATTAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
18 15 0.58
19 6 0.23
20 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (19 bp):
AAAAAGTATAAAATTTATT
Found at i:70867208 original size:28 final size:29
Alignment explanation
Indices: 70867168--70867246 Score: 76
Period size: 28 Copynumber: 2.8 Consensus size: 29
70867158 AATTTTTTTA
70867168 AAAAAAGTA-TAAAATTTATTAAAAATT-T
1 AAAAAA-TATTAAAATTTATTAAAAATTAT
**
70867196 AAAAAATATTAAAAAGTATT-AAAATTAT
1 AAAAAATATTAAAATTTATTAAAAATTAT
*
70867224 AAATTAAA-ATTAAAATTAATTAA
1 AAA--AAATATTAAAATTTATTAA
70867247 TTGCAAACGT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
27 8 0.20
28 19 0.46
29 10 0.24
30 4 0.10
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (29 bp):
AAAAAATATTAAAATTTATTAAAAATTAT
Found at i:70867226 original size:18 final size:19
Alignment explanation
Indices: 70867169--70867223 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
70867159 ATTTTTTTAA
70867169 AAAAAGTA-TAAAATTTATT
1 AAAAAGTATTAAAA-TTATT
*
70867188 AAAAA-T-TTAAAAAATATT
1 AAAAAGTATT-AAAATTATT
70867206 AAAAAGTATTAAAATTAT
1 AAAAAGTATTAAAATTAT
70867224 AAATTAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
18 11 0.37
19 17 0.57
20 2 0.07
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (19 bp):
AAAAAGTATTAAAATTATT
Found at i:70867231 original size:13 final size:12
Alignment explanation
Indices: 70867213--70867242 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
70867203 ATTAAAAAGT
70867213 ATTAAAATTATAA
1 ATTAAAATTA-AA
70867226 ATTAAAATTAAA
1 ATTAAAATTAAA
70867238 ATTAA
1 ATTAA
70867243 TTAATTGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
ATTAAAATTAAA
Found at i:70867233 original size:6 final size:6
Alignment explanation
Indices: 70867213--70867242 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
70867203 ATTAAAAAGT
70867213 ATTAAA ATTATAA ATTAAA ATTAAA ATTAA
1 ATTAAA ATTA-AA ATTAAA ATTAAA ATTAA
70867243 TTAATTGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (6 bp):
ATTAAA
Found at i:70867636 original size:23 final size:23
Alignment explanation
Indices: 70867610--70867656 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
70867600 TTTTATCTCA
*
70867610 ATTTTTAATAAAATAAGTTTTAT
1 ATTTTTAATAAAATAAGTTCTAT
70867633 ATTTTTAATAAAATAAGTTCTAT
1 ATTTTTAATAAAATAAGTTCTAT
70867656 A
1 A
70867657 CTTAAAAGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (23 bp):
ATTTTTAATAAAATAAGTTCTAT
Found at i:70872785 original size:15 final size:15
Alignment explanation
Indices: 70872765--70872794 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70872755 CCCACATCAT
70872765 CACACACACTCCAAA
1 CACACACACTCCAAA
*
70872780 CACACAGACTCCAAA
1 CACACACACTCCAAA
70872795 ATCAAGTAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.43, G:0.03, T:0.07
Consensus pattern (15 bp):
CACACACACTCCAAA
Found at i:70874904 original size:10 final size:10
Alignment explanation
Indices: 70874886--70874935 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
70874876 AAATATATAC
*
70874886 ATATTAAAAT
1 ATATAAAAAT
70874896 ATATAAAAAT
1 ATATAAAAAT
*
70874906 AGA-AATAAAT
1 ATATAA-AAAT
70874916 ATATAAAAAT
1 ATATAAAAAT
70874926 -TCATAAAAAT
1 AT-ATAAAAAT
70874936 GCATAGAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 3 0.09
10 29 0.85
11 2 0.06
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (10 bp):
ATATAAAAAT
Found at i:70875067 original size:19 final size:18
Alignment explanation
Indices: 70875045--70875102 Score: 53
Period size: 19 Copynumber: 3.0 Consensus size: 18
70875035 TTTAAATACC
70875045 TTTTAATTTTTTATAATTT
1 TTTTAA-TTTTTATAATTT
70875064 TTTTCAATTTTTATATATTAT
1 TTTT-AATTTTTATA-ATT-T
* * *
70875085 TTTGACTTTTTAAAATTT
1 TTTTAATTTTTATAATTT
70875103 ATAATTTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
18 1 0.03
19 15 0.45
20 13 0.39
21 4 0.12
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTAATTTTTATAATTT
Found at i:70875094 original size:20 final size:19
Alignment explanation
Indices: 70875052--70875101 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
70875042 ACCTTTTAAT
*
70875052 TTTTTATAATTTTTTTCAA
1 TTTTTATAATTATTTTCAA
* *
70875071 TTTTTATATATTATTTTGAC
1 TTTTTATA-ATTATTTTCAA
*
70875091 TTTTTAAAATT
1 TTTTTATAATT
70875102 TATAATTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTTTATAATTATTTTCAA
Found at i:70875369 original size:29 final size:28
Alignment explanation
Indices: 70875290--70875363 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 28
70875280 TCAAAAGTGT
70875290 TTTTTTATATTTAAATATTTAATATTATAA
1 TTTTTTAT-TTTAAATA-TTAATATTATAA
70875320 TTTTTTAAATTTTAAAT-TTAA-ATT-TAA
1 TTTTTT--ATTTTAAATATTAATATTATAA
70875347 TCTTTTTATTTTAAATA
1 T-TTTTTATTTTAAATA
70875364 ACTTAATTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
26 9 0.22
27 4 0.10
28 8 0.20
29 4 0.10
30 6 0.15
31 7 0.17
32 2 0.05
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (28 bp):
TTTTTTATTTTAAATATTAATATTATAA
Found at i:70877749 original size:21 final size:20
Alignment explanation
Indices: 70877710--70877748 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
70877700 TTACAAAAAG
70877710 AAAAATTCAAAATAATTTTC
1 AAAAATTCAAAATAATTTTC
*
70877730 AAAAATTCAAAATTATTTT
1 AAAAATTCAAAATAATTTT
70877749 TAAATTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTTC
Found at i:70877798 original size:26 final size:26
Alignment explanation
Indices: 70877749--70877804 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
70877739 AAATTATTTT
* *
70877749 TAAATTTTAAAATATTTATGAAAATTC
1 TAAATTTTAAAATATTTA-AAAAAATC
*
70877776 TAAATTTT-ATATATTTAAAAAAATC
1 TAAATTTTAAAATATTTAAAAAAATC
70877801 TAAA
1 TAAA
70877805 AAAATTCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 10 0.38
26 8 0.31
27 8 0.31
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.43
Consensus pattern (26 bp):
TAAATTTTAAAATATTTAAAAAAATC
Found at i:70883776 original size:25 final size:28
Alignment explanation
Indices: 70883724--70883777 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 28
70883714 TTATCACTAT
* *
70883724 TATGTGTTGAATGATTGATTTTGCATAA
1 TATGTGTTGAATGATTGATTATGAATAA
70883752 TATG-GTTGAAT-A-TGATTATGAATAA
1 TATGTGTTGAATGATTGATTATGAATAA
70883777 T
1 T
70883778 GCATGACGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 12 0.50
26 1 0.04
27 7 0.29
28 4 0.17
ACGTcount: A:0.33, C:0.02, G:0.20, T:0.44
Consensus pattern (28 bp):
TATGTGTTGAATGATTGATTATGAATAA
Found at i:70883927 original size:48 final size:47
Alignment explanation
Indices: 70883867--70884187 Score: 259
Period size: 48 Copynumber: 6.7 Consensus size: 47
70883857 TATGTGTGCT
* * *
70883867 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCACAATATGAGAACC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATAATATGAGAGCC
* * * ** *
70883915 AGTGTAAGACCATGTTTGGAACATGGCATCGGTAATGTTGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATAATATGAGAGCC
* * * * * *
70883963 AATGAAAGACCATGT-TGGGACATGGCATCAGCATTGATATGTGCA-CT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TAATATGAG-AGCC
* * * * *
70884010 AGTGTAAGACCATGTTTGGAACATGGCATCGACCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCG-GCATAATATGAGAGCC
* ** * * * *
70884058 AGTGTAAGACCATGTCTAGGACATGGCATTAGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TAATATGAGAGCC
* * * * *
70884106 AGAGTAAGACCATGTCTGGGACATGGCATCGGGCTTAACATGTGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCATAATATGAGAGCC
* *
70884154 AGTGTAAGACCATGTTTGGGACATGGCATTGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
70884188 ATTTACCCTC
Statistics
Matches: 212, Mismatches: 54, Indels: 15
0.75 0.19 0.05
Matches are distributed among these distances:
46 1 0.00
47 40 0.19
48 167 0.79
49 4 0.02
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATAATATGAGAGCC
Found at i:70884036 original size:143 final size:143
Alignment explanation
Indices: 70883854--70884182 Score: 389
Period size: 143 Copynumber: 2.3 Consensus size: 143
70883844 GACATTTGGG
* * * *
70883854 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCACAATATGAGAACCAGTG
1 TGATATGTG-ACTAGTGTAAGACCATGTTTGGGACATGGCATCGACCACAATATGAGAACCAGTG
* * * * *
70883919 TAAGACCATGT-TTGGAACATGGCATCGGTAATGTTG-TGAGAGCCA-ATGAAAGACCATGT-TG
65 TAAGACCATGTCTAGG-ACATGGCATCAGCAATG-AGACGAGAGCCAGA-GAAAGACCATGTCTG
70883980 GGACATGGCATC-AGCAT
127 GGACATGGCATCGAGC-T
* * *
70883997 TGATATGTGCACTAGTGTAAGACCATGTTTGGAACATGGCATCGACCACATTATGAGAGCCAGTG
1 TGATATGTG-ACTAGTGTAAGACCATGTTTGGGACATGGCATCGACCACAATATGAGAACCAGTG
* * * *
70884062 TAAGACCATGTCTAGGACATGGCATTAGCATTGAGACGAGAGCTAGAGTAAGACCATGTCTGGGA
65 TAAGACCATGTCTAGGACATGGCATCAGCAATGAGACGAGAGCCAGAGAAAGACCATGTCTGGGA
*
70884127 CATGGCATCGGGCT
130 CATGGCATCGAGCT
* *
70884141 TAACATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCAT
1 TGATATGTGA-CTAGTGTAAGACCATGTTTGGGACATGGCAT
70884183 TGGCAATTTA
Statistics
Matches: 159, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
142 1 0.01
143 100 0.63
144 56 0.35
145 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (143 bp):
TGATATGTGACTAGTGTAAGACCATGTTTGGGACATGGCATCGACCACAATATGAGAACCAGTGT
AAGACCATGTCTAGGACATGGCATCAGCAATGAGACGAGAGCCAGAGAAAGACCATGTCTGGGAC
ATGGCATCGAGCT
Found at i:70884054 original size:95 final size:96
Alignment explanation
Indices: 70883915--70884136 Score: 277
Period size: 95 Copynumber: 2.3 Consensus size: 96
70883905 TATGAGAACC
** ** *
70883915 AGTGTAAGACCATGTTTGGAACATGGCATCGGTAATGTTGTGAGAGCCAATGAAAGACCATGT-T
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACAACATTATGAGAGCCAATGAAAGACCATGTCT
* * * *
70883979 GGGACATGGCATCAGCATTGATATGTGCA-CT
66 AGGACATGGCATCAGCATTGAGACGAG-AGCT
* * *
70884010 AGTGTAAGACCATGTTTGGAACATGGCATCGACCACATTATGAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACAACATTATGAGAGCCAATGAAAGACCATGTCT
*
70884075 AGGACATGGCATTAGCATTGAGACGAGAGCT
66 AGGACATGGCATCAGCATTGAGACGAGAGCT
* * *
70884106 AGAGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTTTGGAACATGGCATCG
70884137 GGCTTAACAT
Statistics
Matches: 109, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
95 56 0.51
96 53 0.49
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (96 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGACAACATTATGAGAGCCAATGAAAGACCATGTCT
AGGACATGGCATCAGCATTGAGACGAGAGCT
Found at i:70884135 original size:96 final size:95
Alignment explanation
Indices: 70883918--70884183 Score: 300
Period size: 96 Copynumber: 2.8 Consensus size: 95
70883908 GAGAACCAGT
** * * * *
70883918 GTAAGACCATGTTTGGAACATGGCATCGGTAATGTTGTGAGAGCCAATGAAAGACCATGTTGGGA
1 GTAAGACCATGTTTGGAACATGGCATCGGCCATATTATGAGAGCCAGTGTAAGACCATGTTGGGA
* * * * *
70883983 CATGGCATCAGCATTGATATGTGCACTAGT
66 CATGGCATTAGCATTGAGACGAGCACTAGA
* * *
70884013 GTAAGACCATGTTTGGAACATGGCATCGACCACATTATGAGAGCCAGTGTAAGACCATGTCTAGG
1 GTAAGACCATGTTTGGAACATGGCATCGGCCATATTATGAGAGCCAGTGTAAGACCATGT-TGGG
70884078 ACATGGCATTAGCATTGAGACGAG-AGCTAGA
65 ACATGGCATTAGCATTGAGACGAGCA-CTAGA
* * * * ** * *
70884109 GTAAGACCATGTCTGGGACATGGCATCGGGCTTAACATGTGAGCTAGTGTAAGACCATGTTTGGG
1 GTAAGACCATGTTTGGAACATGGCATCGGCCATATTATGAGAGCCAGTGTAAGACCATG-TTGGG
70884174 ACATGGCATT
65 ACATGGCATT
70884184 GGCAATTTAC
Statistics
Matches: 143, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
95 53 0.37
96 89 0.62
97 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (95 bp):
GTAAGACCATGTTTGGAACATGGCATCGGCCATATTATGAGAGCCAGTGTAAGACCATGTTGGGA
CATGGCATTAGCATTGAGACGAGCACTAGA
Found at i:70887120 original size:14 final size:15
Alignment explanation
Indices: 70887084--70887120 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
70887074 CAAACATTTG
70887084 TCAACATTAATTATT
1 TCAACATTAATTATT
*
70887099 T-AATATTAATTATT
1 TCAACATTAATTATT
70887113 TCAA-ATTA
1 TCAACATTA
70887121 CATTTTATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 17 0.85
15 3 0.15
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (15 bp):
TCAACATTAATTATT
Found at i:70887201 original size:61 final size:61
Alignment explanation
Indices: 70887135--70887322 Score: 181
Period size: 61 Copynumber: 3.1 Consensus size: 61
70887125 TTATAGTATC
70887135 ATATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * ** * *
70887196 ATATATTTTAATTATAATATATTTA-ATAATAATTATGTTAA--ATT-A-TCTTTTA-TAGTATC
1 ATATATTATGATTTTAATAAATTCATATAAGAA-TA--TTAATTATTAAGAATTTTATTA-AATT
* * *
70887255 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
70887316 ATATATT
1 ATATATT
70887323 TTAATTATAA
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
57 3 0.03
58 2 0.02
59 30 0.32
60 14 0.15
61 39 0.41
62 2 0.02
63 4 0.04
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:70887217 original size:16 final size:16
Alignment explanation
Indices: 70887196--70887241 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
70887186 TTATTAAATT
70887196 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
70887212 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
70887227 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
70887242 CTTTTATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:70887308 original size:120 final size:120
Alignment explanation
Indices: 70887091--70887359 Score: 454
Period size: 120 Copynumber: 2.2 Consensus size: 120
70887081 TTGTCAACAT
* *
70887091 TAAT-TATTTAATATTAATTAT-TTCAAATTACATTTTATAGTATCATATATTATGATTTTAATA
1 TAATATATTTAATAATAATTATGTT-AAATTACATTTTATAGTATCATATATTATGATTTGAATA
70887154 AATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTA
65 AATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTA
*
70887210 TAATATATTTAATAATAATTATGTTAAATTATC-TTTTATAGTATCATATATTATGATTTGAGTA
1 TAATATATTTAATAATAATTATGTTAAATTA-CATTTTATAGTATCATATATTATGATTTGAATA
*
70887274 AATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTA
65 AATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTA
70887330 TAATATATTTAATAATAATTATGTTTAAAT
1 TAATATATTTAATAATAATTATG-TTAAAT
70887360 ATGATTAAAT
Statistics
Matches: 142, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
119 4 0.03
120 129 0.91
121 9 0.06
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
TAATATATTTAATAATAATTATGTTAAATTACATTTTATAGTATCATATATTATGATTTGAATAA
ATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTA
Found at i:70887319 original size:59 final size:58
Alignment explanation
Indices: 70887136--70887319 Score: 139
Period size: 57 Copynumber: 3.1 Consensus size: 58
70887126 TATAGTATCA
*
70887136 TATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TATATTATGATTTAAATAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
* * * * *
70887195 TATA-TAT--TTTAATTATAATAT-ATTTAATAATAATTA-TGTTAA-ATTATCTTT-TATAGTA
1 TATATTATGATTTAAATA-AAT-TCATATAAGAAT-ATTATTATTAAGA--AT-TTTAT-TA-AA
70887253 T
58 T
* *
70887254 CATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAATAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
70887315 TATAT
1 TATAT
70887320 ATTTTAATTA
Statistics
Matches: 95, Mismatches: 12, Indels: 36
0.66 0.08 0.25
Matches are distributed among these distances:
55 1 0.01
56 11 0.12
57 15 0.16
58 12 0.13
59 11 0.12
61 6 0.06
62 12 0.13
63 15 0.16
64 11 0.12
65 1 0.01
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (58 bp):
TATATTATGATTTAAATAAATTCATATAAGAATATTATTATTAAGAATTTTATTAAAT
Found at i:70887337 original size:16 final size:16
Alignment explanation
Indices: 70887316--70887357 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
70887306 TTATTAAATT
*
70887316 ATATATTTTAATTATA
1 ATATATTTTAATAATA
70887332 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
70887347 AT-TATGTTTAA
1 ATATAT-TTTAA
70887358 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:70887342 original size:15 final size:15
Alignment explanation
Indices: 70887307--70887348 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
70887297 TTAAGAATTT
*
70887307 TATTAAATTAT-ATA
1 TATTTAATTATAATA
70887321 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
70887335 TATTTAATAATAAT
1 TATTTAATTATAAT
70887349 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:70887583 original size:45 final size:43
Alignment explanation
Indices: 70887483--70887592 Score: 120
Period size: 45 Copynumber: 2.6 Consensus size: 43
70887473 TTTTCCATTA
70887483 TGCTATTACACCTCTATT-C---CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
* * ***
70887522 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCA-TACATTCAACCAAACACAAGA-T
70887567 TGCTATTACACCTCTATTCCAATACA
1 TGCTATTACACCTCTATTCC-ATACA
70887593 CCTCTAATCC
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 23 0.40
46 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
Found at i:70887594 original size:16 final size:16
Alignment explanation
Indices: 70887573--70887640 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
70887563 GATTTGCTAT
*
70887573 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
*
70887589 TACACCTCTAATCCAT
1 TACACCTCTAATCCAA
70887605 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
70887621 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
70887637 TACA
1 TACA
70887641 ACGAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:70898746 original size:40 final size:40
Alignment explanation
Indices: 70898670--70898893 Score: 301
Period size: 40 Copynumber: 5.6 Consensus size: 40
70898660 CAAACCCAAG
* * *
70898670 TACCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAAA
1 TACCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAA
* *
70898709 TACCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAA
1 TACCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
*
70898749 -AGCCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAA
1 TA-CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
*
70898789 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
1 TACCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
* * *
70898829 TGCCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAA
1 TACCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
* *
70898869 TGCCTTCGGGACTTAACCCGGATAT
1 TACCTTCGGGACTTAGCCCGGATAT
70898894 CATTCGAATA
Statistics
Matches: 168, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 15 0.09
40 150 0.89
41 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
TACCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
Found at i:70898804 original size:80 final size:80
Alignment explanation
Indices: 70898672--70898893 Score: 340
Period size: 80 Copynumber: 2.8 Consensus size: 80
70898662 AACCCAAGTA
* * * * *
70898672 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAAATACCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
70898735 GTCAATAGCACAAAAG
65 ATCAATAGCACAAAAG
70898751 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
1 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
*
70898816 TCAATAGCACAAATG
66 TCAATAGCACAAAAG
* *
70898831 CCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
70898894 CATTCGAATA
Statistics
Matches: 132, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
79 13 0.10
80 117 0.89
81 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
TCAATAGCACAAAAG
Found at i:70927435 original size:1 final size:1
Alignment explanation
Indices: 70927429--70927484 Score: 112
Period size: 1 Copynumber: 56.0 Consensus size: 1
70927419 TATCGATAAC
70927429 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
70927485 CAACAACAAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 55 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:70929506 original size:30 final size:30
Alignment explanation
Indices: 70929462--70929530 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
70929452 CAAAGATAAC
*
70929462 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
* * *
70929491 GAGAAACCCAGAATAAAGAGATCCAGGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
70929521 AAGAAACCCA
1 AAGAAACCCA
70929531 AGATATGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 7 0.21
30 27 0.79
ACGTcount: A:0.57, C:0.17, G:0.17, T:0.09
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:70929535 original size:15 final size:15
Alignment explanation
Indices: 70929473--70929535 Score: 65
Period size: 15 Copynumber: 4.2 Consensus size: 15
70929463 AGAAAACCGA
*
70929473 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
*
70929488 ATAGAGAAACCC-AG
1 ATAAAGAAACCCAAG
* * *
70929502 AATAAAGAGATCCAGG
1 -ATAAAGAAACCCAAG
70929518 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
70929533 ATA
1 ATA
70929536 TGATACTATG
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
14 2 0.05
15 34 0.92
16 1 0.03
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.11
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:70932532 original size:46 final size:45
Alignment explanation
Indices: 70932465--70932635 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 45
70932455 ACCCGCCCAT
* *
70932465 AAGTGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCAC
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTT-GCATCCAC
* *
70932511 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGGCTAGTTACAT-CTC
1 AAGTGAACTCGGACTCAACTCAACGAGCTC-G--GGC--GTTGCATCCAC
* * *
70932560 ---TCGAACTCGGACTCAACTCAACGAG-TCCGGACATTTGCATCCAT
1 AAGT-GAACTCGGACTCAACTCAACGAGCT-CGGGC-GTTGCATCCAC
*
70932604 AAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGG
70932636 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 9, Indels: 24
0.76 0.07 0.18
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
46 57 0.55
47 27 0.26
49 5 0.05
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (45 bp):
AAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTGCATCCAC
Found at i:70932628 original size:93 final size:93
Alignment explanation
Indices: 70932469--70932638 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
70932459 GCCCATAAGT
* * *
70932469 GAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCACAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
70932534 CGAGCTCGGATGGCTAGTTACATCTCTC
66 CGAGCTCGGATGGCTAGTTACATCTCTC
* * *
70932562 GAACTCGGACTCAACTCAACGAG-TCCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCT-CGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
*
70932626 ACGAGTTCGGATG
65 ACGAGCTCGGATG
70932639 CTCAACCATC
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 68 0.99
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGGCTAGTTACATCTCTC
Found at i:70932655 original size:46 final size:46
Alignment explanation
Indices: 70932512--70932655 Score: 113
Period size: 46 Copynumber: 3.1 Consensus size: 46
70932502 CGCATCCACA
*
70932512 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGGCT-AGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGAT-GCTCA---ACCATC-CT
* * * * *
70932561 --CGAACTCGGACTCAACTCAACGAGTCCGGACAT-TTGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCCT
70932605 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
70932651 AGTGA
1 AGTGA
70932656 CATGTCACTT
Statistics
Matches: 74, Mismatches: 11, Indels: 23
0.69 0.10 0.21
Matches are distributed among these distances:
44 8 0.11
45 1 0.01
46 32 0.43
47 30 0.41
49 3 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:70940783 original size:40 final size:40
Alignment explanation
Indices: 70940710--70940850 Score: 214
Period size: 40 Copynumber: 3.5 Consensus size: 40
70940700 ACCCAAGTAT
* *
70940710 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
*
70940749 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
70940789 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
70940829 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
70940851 CATCCAAATA
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 11 0.12
40 82 0.87
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:70944240 original size:39 final size:40
Alignment explanation
Indices: 70944146--70944367 Score: 246
Period size: 39 Copynumber: 5.6 Consensus size: 40
70944136 TTGAATGATG
*
70944146 CCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT-T
* *
70944185 CTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATT
70944225 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATT
* * *
70944264 CCAGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATT
* *
70944303 CCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-T
*
70944343 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70944368 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 15, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
39 89 0.56
40 58 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATT
Found at i:70944280 original size:78 final size:80
Alignment explanation
Indices: 70944146--70944367 Score: 244
Period size: 79 Copynumber: 2.8 Consensus size: 80
70944136 TTGAATGATG
* * * * *
70944146 CCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAAT-ATCTGGACTAAGAT-CCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCAGG-CTAAG-TCCCGAAGGCAT
*
70944207 TTGTGCGAGATACTAATT
63 TTGTGCGAGATACTAAAT
*
70944225 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTA-ATTCCAGGCTAAG-CCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCAGGCTAAGTCCCGAAGGCATT
*
70944286 TGTGCGAGTTACTAAAT
64 TGTGCGAGATACTAAAT
* * *
70944303 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCAGGCTAAGTCCCGAAGGCATTTG
70944368 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 12, Indels: 19
0.80 0.08 0.12
Matches are distributed among these distances:
78 45 0.37
79 50 0.41
80 25 0.21
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCAGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAAT
Found at i:70944389 original size:79 final size:79
Alignment explanation
Indices: 70944197--70944400 Score: 204
Period size: 79 Copynumber: 2.6 Consensus size: 79
70944187 GGACTAAGAT
** * *
70944197 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACT
*
70944260 AATTCCAGGCTAAGC
65 AATACCAGGCTAAGC
** *
70944275 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACT
* *
70944339 -ATAACCGGGCTATGTC
65 AAT-ACCAGGCTAAG-C
* * *
70944355 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
70944401 TACGTGATTT
Statistics
Matches: 109, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
77 1 0.01
78 37 0.34
79 46 0.42
80 25 0.23
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
ATACCAGGCTAAGC
Found at i:70949570 original size:27 final size:27
Alignment explanation
Indices: 70949539--70949716 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70949529 TAAATTGTAC
70949539 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
70949566 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70949592 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
70949620 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
70949648 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70949675 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70949702 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70949717 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70949653 original size:82 final size:81
Alignment explanation
Indices: 70949540--70949695 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70949530 AAATTGTACA
* *
70949540 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
70949604 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
70949621 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
70949686 TGCGAGTTGA
65 TGCGAATTGA
70949696 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70949707 original size:82 final size:81
Alignment explanation
Indices: 70949536--70949716 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
70949526 GATTAAATTG
* *
70949536 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
70949601 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70949617 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
70949681 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
70949699 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70949717 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70954516 original size:39 final size:40
Alignment explanation
Indices: 70954421--70954643 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
70954411 TTGAATGATG
*
70954421 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
70954459 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
70954500 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
70954539 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
70954578 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
70954617 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
70954644 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:70954607 original size:79 final size:81
Alignment explanation
Indices: 70954421--70954643 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
70954411 TTGAATGATG
* * *
70954421 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
70954483 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
70954500 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
70954561 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
70954578 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
70954642 TG
66 TG
70954644 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:70954665 original size:79 final size:79
Alignment explanation
Indices: 70954421--70954676 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
70954411 TTGAATGATG
* * * *
70954421 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
70954482 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
70954500 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
70954564 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
70954578 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
70954641 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
70954658 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
70954677 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:70956483 original size:37 final size:37
Alignment explanation
Indices: 70956400--70956527 Score: 210
Period size: 39 Copynumber: 3.5 Consensus size: 37
70956390 GGGACGAGAA
70956400 CTCGCAC-AATGCCTTCGGCTTA-CCGG-ATTAGTA-
1 CTCGCACAAATGCCTTCGGCTTACCCGGAATTAGTAT
70956433 CTCGCACAAATGCCTTCGGCTTACCCGGAATTAGTAT
1 CTCGCACAAATGCCTTCGGCTTACCCGGAATTAGTAT
70956470 CTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTAT
1 CTCGCACAAATGCCTTC-GGCTTA-CCCGGAATTAGTAT
70956509 CTCGCACAAATGCCTTCGG
1 CTCGCACAAATGCCTTCGG
70956528 ATCTTAGTCC
Statistics
Matches: 89, Mismatches: 0, Indels: 7
0.93 0.00 0.07
Matches are distributed among these distances:
33 7 0.08
34 15 0.17
35 4 0.04
36 7 0.08
37 17 0.19
38 8 0.09
39 31 0.35
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (37 bp):
CTCGCACAAATGCCTTCGGCTTACCCGGAATTAGTAT
Found at i:70956510 original size:39 final size:38
Alignment explanation
Indices: 70956399--70956579 Score: 202
Period size: 39 Copynumber: 4.8 Consensus size: 38
70956389 CGGGACGAGA
70956399 ACTCGCAC-AATGCCTTC-GGCTTA--CCGG-ATTAGT
1 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGT
70956432 ACTCGCACAAATGCCTTC-GGCTTA-CCCGGAATTAGT
1 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGT
70956468 ATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGT
1 A-CTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGT
* *
70956507 ATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATT-GT
1 A-CTCGCACAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT
*
70956547 CACTTAGCAC-AA-GCCTTCGGGACTTAGCCCGGA
1 -AC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGA
70956580 CATCATTCAA
Statistics
Matches: 132, Mismatches: 5, Indels: 16
0.86 0.03 0.10
Matches are distributed among these distances:
33 8 0.06
34 15 0.11
35 4 0.03
36 7 0.05
37 17 0.13
38 6 0.05
39 51 0.39
40 15 0.11
41 9 0.07
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (38 bp):
ACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGT
Found at i:70964433 original size:79 final size:78
Alignment explanation
Indices: 70964331--70964553 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
70964321 GCTCCTCGTT
* *
70964331 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
70964396 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
70964411 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
70964474 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
70964489 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
70964552 GA
63 GA
70964554 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:70964448 original size:39 final size:40
Alignment explanation
Indices: 70964331--70964553 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
70964321 GCTCCTCGTT
* *
70964331 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
70964371 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
70964411 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
70964450 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
70964489 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
70964530 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70964554 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:70969071 original size:46 final size:46
Alignment explanation
Indices: 70969015--70969190 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
70969005 TGGTTGAGCA
70969015 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* * *
70969061 TTCGAACTCGTTGAGTTGAGTCCGAGTT---C-GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGCGAA-T--G
* *
70969106 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* * * *
70969154 CCCGAGCTCGTTGAGTTGAGTCCGATTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGG
70969191 TCGGGTTACA
Statistics
Matches: 108, Mismatches: 11, Indels: 22
0.77 0.08 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 1 0.01
46 61 0.56
47 27 0.25
48 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
Found at i:70971013 original size:19 final size:20
Alignment explanation
Indices: 70970989--70971030 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
70970979 ATGAAACAGG
70970989 AAATTGA-AT-TGAGAATTGA
1 AAATTGAGATATGAG-ATTGA
70971008 AAATTGAGATATGAGATTGA
1 AAATTGAGATATGAGATTGA
70971028 AAA
1 AAA
70971031 CATGAATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.33
20 10 0.48
21 4 0.19
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (20 bp):
AAATTGAGATATGAGATTGA
Found at i:70975913 original size:38 final size:38
Alignment explanation
Indices: 70975857--70975933 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
70975847 TGGCCTTGCT
* *
70975857 CGTGTGGCCCACAAGGCCTAGCCCAAAACCTACACGCC
1 CGTGTGGCACACAAGGCCTAGCCCAAAAACTACACGCC
* *
70975895 CGTGTGGCACACACGGCCTAGCCCAAAAATTACACGCC
1 CGTGTGGCACACAAGGCCTAGCCCAAAAACTACACGCC
70975933 C
1 C
70975934 AACTTGGCCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.27, C:0.40, G:0.21, T:0.12
Consensus pattern (38 bp):
CGTGTGGCACACAAGGCCTAGCCCAAAAACTACACGCC
Found at i:70979210 original size:34 final size:34
Alignment explanation
Indices: 70979161--70979283 Score: 165
Period size: 34 Copynumber: 3.6 Consensus size: 34
70979151 ATGTAATCTG
* * *
70979161 GGCCTAAGCACATTTCAGTCTCAGTAGCAGTTCA
1 GGCCTTAGCCCATTTCAGTTTCAGTAGCAGTTCA
* *
70979195 AGCCTTAGCCCATTTCAGTTTCAGTAGCAGTTCG
1 GGCCTTAGCCCATTTCAGTTTCAGTAGCAGTTCA
* * *
70979229 GGTCTTAGCCCATTTTAGTTTCAGTAGCAGTTCT
1 GGCCTTAGCCCATTTCAGTTTCAGTAGCAGTTCA
*
70979263 GGTCTTAGCCCATTTCAGTTT
1 GGCCTTAGCCCATTTCAGTTT
70979284 TATTATCAGA
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 79 1.00
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (34 bp):
GGCCTTAGCCCATTTCAGTTTCAGTAGCAGTTCA
Found at i:70991538 original size:36 final size:37
Alignment explanation
Indices: 70991463--70991541 Score: 124
Period size: 37 Copynumber: 2.2 Consensus size: 37
70991453 AAAAGAAAGT
* **
70991463 AAAAGAAGGAAATAAAACAAAAGAATTGGGAATGATG
1 AAAATAAGGAAATAAAACAAAAGAATCAGGAATGATG
70991500 AAAATAAGGAAATAAAACAAAA-AATCAGGAATGATG
1 AAAATAAGGAAATAAAACAAAAGAATCAGGAATGATG
70991536 AAAATA
1 AAAATA
70991542 GCTAAAGTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
36 18 0.46
37 21 0.54
ACGTcount: A:0.63, C:0.04, G:0.19, T:0.14
Consensus pattern (37 bp):
AAAATAAGGAAATAAAACAAAAGAATCAGGAATGATG
Found at i:70994445 original size:23 final size:23
Alignment explanation
Indices: 70994414--70994523 Score: 98
Period size: 23 Copynumber: 4.8 Consensus size: 23
70994404 GCTGATGAAT
**
70994414 AGTAAGCTCTATTGAGCTGAAAC
1 AGTAAGCTCTAACGAGCTGAAAC
*
70994437 GGTAAGCTCTAACGAGCTG-AAC
1 AGTAAGCTCTAACGAGCTGAAAC
**
70994459 AGTAAGCTC-ATACGAGCTGAATT
1 AGTAAGCTCTA-ACGAGCTGAAAC
* * * *
70994482 GGTAAGCTCCAATGAGCTAAAAAC
1 AGTAAGCTCTAACGAGCT-GAAAC
*
70994506 AGTAAGCTCTTACGAGCT
1 AGTAAGCTCTAACGAGCT
70994524 AATATATCGG
Statistics
Matches: 68, Mismatches: 15, Indels: 7
0.76 0.17 0.08
Matches are distributed among these distances:
21 1 0.01
22 19 0.28
23 31 0.46
24 17 0.25
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.23
Consensus pattern (23 bp):
AGTAAGCTCTAACGAGCTGAAAC
Found at i:70994465 original size:45 final size:46
Alignment explanation
Indices: 70994409--70994523 Score: 128
Period size: 45 Copynumber: 2.5 Consensus size: 46
70994399 CCTGAGCTGA
* * *
70994409 TGAATAGTAAGCTCTAT-TGAGCTGAAACGGTAAGCTCTAACGAGC
1 TGAACAGTAAGCTCTATACGAGCTGAAACGGTAAGCTCCAACGAGC
** *
70994454 TGAACAGTAAGCTC-ATACGAGCTGAATTGGTAAGCTCCAATGAGC
1 TGAACAGTAAGCTCTATACGAGCTGAAACGGTAAGCTCCAACGAGC
*
70994499 TAAAAACAGTAAGCTCT-TACGAGCT
1 T--GAACAGTAAGCTCTATACGAGCT
70994524 AATATATCGG
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
44 2 0.03
45 37 0.63
47 20 0.34
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (46 bp):
TGAACAGTAAGCTCTATACGAGCTGAAACGGTAAGCTCCAACGAGC
Found at i:70997051 original size:65 final size:65
Alignment explanation
Indices: 70996947--70997078 Score: 219
Period size: 65 Copynumber: 2.0 Consensus size: 65
70996937 TGTTATTGAA
* **
70996947 ATTGAGAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGTTGTGATTAACAGG
1 ATTGAGAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGCTGTGAACTGTGATTAACAGG
* *
70997012 ATTGAGAAATTGATTTGTATTATTGTTTGAGCATTACTCACTTGCTGTGAACTGTGATTAACAGG
1 ATTGAGAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGCTGTGAACTGTGATTAACAGG
70997077 AT
1 AT
70997079 CTCTGTTAGT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.27, C:0.11, G:0.22, T:0.40
Consensus pattern (65 bp):
ATTGAGAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGCTGTGAACTGTGATTAACAGG
Found at i:71001986 original size:25 final size:25
Alignment explanation
Indices: 71001939--71001986 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
71001929 TTCCTTATAA
**
71001939 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
71001964 ACTTTAAATTAGGAATTAGATTA
1 ACTTTAAATTAGGAATTAGATTA
71001987 AGATTTTCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.40
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAGATTAGG
Found at i:71005998 original size:46 final size:46
Alignment explanation
Indices: 71005931--71006021 Score: 182
Period size: 46 Copynumber: 2.0 Consensus size: 46
71005921 TTCTACAAGG
71005931 ATTGAAGCTGTGGATAAGGCTCTACAAGATAGGGATGCACTTTTAT
1 ATTGAAGCTGTGGATAAGGCTCTACAAGATAGGGATGCACTTTTAT
71005977 ATTGAAGCTGTGGATAAGGCTCTACAAGATAGGGATGCACTTTTA
1 ATTGAAGCTGTGGATAAGGCTCTACAAGATAGGGATGCACTTTTA
71006022 CACAATGCTC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (46 bp):
ATTGAAGCTGTGGATAAGGCTCTACAAGATAGGGATGCACTTTTAT
Found at i:71006687 original size:25 final size:25
Alignment explanation
Indices: 71006653--71006703 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
71006643 TTCCTTATAA
**
71006653 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
71006678 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
71006703 A
1 A
71006704 TTTTCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAGATTAGG
Found at i:71006702 original size:12 final size:12
Alignment explanation
Indices: 71006656--71006703 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
71006646 CTTATAAACT
71006656 TTAAATTAGGAA
1 TTAAATTAGGAA
** *
71006668 TTCTATTAGGACT
1 TTAAATTAGGA-A
71006681 TTAAATTAGGAA
1 TTAAATTAGGAA
*
71006693 TTAGATTAGGA
1 TTAAATTAGGA
71006704 TTTTCCTTTG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38
Consensus pattern (12 bp):
TTAAATTAGGAA
Found at i:71015408 original size:131 final size:128
Alignment explanation
Indices: 71015174--71015437 Score: 492
Period size: 131 Copynumber: 2.0 Consensus size: 128
71015164 TTGGCCGACC
71015174 TCTTTGTTGATTTTCTTGTGGCAGCTCGTATTTAATTCCTCAACTTCTAATATTTAAATATTAAT
1 TCTTTGTTGATTTTCTTGTGGCAGCTCGTATTTAATTCCTCAACTTCTAATATTTAAATATTAAT
71015239 CCTATGAGAGGTATATTATTATTATTTATTTGGCCAAATGAGAGGTATATTATTTAGTCTTTCAT
66 CCTATGAGAGGTATATTATTATTATTTATTTGGCCAAATGAGAGG--TA-TATTTAGTCTTTCAT
71015304 G
128 G
*
71015305 TCTTTGTTGATTTTCTTGTGGCAGCTCGTATTTAATTCCTCAACTTCTAATATTTAGATATTAAT
1 TCTTTGTTGATTTTCTTGTGGCAGCTCGTATTTAATTCCTCAACTTCTAATATTTAAATATTAAT
71015370 CCTATGAGAGGTATATTATTATTATTTATTTGGCCAAATGAGAGGTATATTTAGTCTTTCATG
66 CCTATGAGAGGTATATTATTATTATTTATTTGGCCAAATGAGAGGTATATTTAGTCTTTCATG
71015433 TCTTT
1 TCTTT
71015438 ATTGTCTCTA
Statistics
Matches: 132, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
128 21 0.16
129 2 0.02
131 109 0.83
ACGTcount: A:0.26, C:0.12, G:0.15, T:0.47
Consensus pattern (128 bp):
TCTTTGTTGATTTTCTTGTGGCAGCTCGTATTTAATTCCTCAACTTCTAATATTTAAATATTAAT
CCTATGAGAGGTATATTATTATTATTTATTTGGCCAAATGAGAGGTATATTTAGTCTTTCATG
Done.