Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 217 of 344
Found at i:72029977 original size:89 final size:89
Alignment explanation
Indices: 72029878--72030055 Score: 356
Period size: 89 Copynumber: 2.0 Consensus size: 89
72029868 AATGGCATTG
72029878 TAGTGTATAAGTATTTTTAAAGGTATTGATCCATTGTATATTCCTCTAAATACTAGTGTAATCAA
1 TAGTGTATAAGTATTTTTAAAGGTATTGATCCATTGTATATTCCTCTAAATACTAGTGTAATCAA
72029943 AGGAATTATGACATTAATCGTACA
66 AGGAATTATGACATTAATCGTACA
72029967 TAGTGTATAAGTATTTTTAAAGGTATTGATCCATTGTATATTCCTCTAAATACTAGTGTAATCAA
1 TAGTGTATAAGTATTTTTAAAGGTATTGATCCATTGTATATTCCTCTAAATACTAGTGTAATCAA
72030032 AGGAATTATGACATTAATCGTACA
66 AGGAATTATGACATTAATCGTACA
72030056 GCCATTGATT
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (89 bp):
TAGTGTATAAGTATTTTTAAAGGTATTGATCCATTGTATATTCCTCTAAATACTAGTGTAATCAA
AGGAATTATGACATTAATCGTACA
Found at i:72034303 original size:30 final size:30
Alignment explanation
Indices: 72034268--72034324 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
72034258 AAAAAATTTT
* *
72034268 AACTTTTAAATGTCTAAAATTTTTTTTACC
1 AACTTTTAAAGGACTAAAATTTTTTTTACC
* *
72034298 AACTTTTAAGGGACTTAAATTTTTTTT
1 AACTTTTAAAGGACTAAAATTTTTTTT
72034325 TTTTAATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.32, C:0.11, G:0.07, T:0.51
Consensus pattern (30 bp):
AACTTTTAAAGGACTAAAATTTTTTTTACC
Found at i:72036013 original size:22 final size:22
Alignment explanation
Indices: 72035979--72036056 Score: 68
Period size: 22 Copynumber: 3.6 Consensus size: 22
72035969 AAGTCTAAAC
72035979 TCAAAA-AAAAAATTATTTGCT
1 TCAAAATAAAAAATTATTTGCT
* ** **
72036000 TCAAAATAAAAAATAAAATAAT
1 TCAAAATAAAAAATTATTTGCT
* * **
72036022 TAAAAATATAATTTTATTTGCT
1 TCAAAATAAAAAATTATTTGCT
72036044 TCAAAATAAAAAA
1 TCAAAATAAAAAA
72036057 ATAAAACAAT
Statistics
Matches: 38, Mismatches: 18, Indels: 1
0.67 0.32 0.02
Matches are distributed among these distances:
21 6 0.16
22 32 0.84
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (22 bp):
TCAAAATAAAAAATTATTTGCT
Found at i:72038650 original size:2 final size:2
Alignment explanation
Indices: 72038643--72038699 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
72038633 ATAAACAAAA
72038643 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
72038685 AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG A
72038700 AGATTACTTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:72042988 original size:15 final size:16
Alignment explanation
Indices: 72042968--72042997 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72042958 TCTCAATACA
72042968 AATATA-TTCATAATC
1 AATATATTTCATAATC
72042983 AATATATTTCATAAT
1 AATATATTTCATAAT
72042998 ATACAAAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATATTTCATAATC
Found at i:72043432 original size:30 final size:30
Alignment explanation
Indices: 72043393--72043452 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72043383 ATTTAACTTC
*
72043393 TTTTCCAATTT-GACCCTTTAATTTCAAAAT
1 TTTTACAATTTAGACCCTTTAA-TTCAAAAT
* *
72043423 TTTTACAATTTAGTCCCTTTTATTCAAAAT
1 TTTTACAATTTAGACCCTTTAATTCAAAAT
72043453 CAACAATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.30, C:0.18, G:0.03, T:0.48
Consensus pattern (30 bp):
TTTTACAATTTAGACCCTTTAATTCAAAAT
Found at i:72043722 original size:22 final size:21
Alignment explanation
Indices: 72043697--72043746 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
72043687 AGCCGTGCAC
72043697 TTCTTCTCCTTTTTCCTTTTCT
1 TTCTT-TCCTTTTTCCTTTTCT
* *
72043719 TTCTTTCTTTTTTTCTTTTCTT
1 TTCTTTCCTTTTTCCTTTTC-T
72043741 TTCTTT
1 TTCTTT
72043747 GTTTAATTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 13 0.52
22 12 0.48
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (21 bp):
TTCTTTCCTTTTTCCTTTTCT
Found at i:72043792 original size:3 final size:3
Alignment explanation
Indices: 72043786--72043811 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
72043776 TTTTTTTTCT
72043786 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
72043812 GTCGAAACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:72044762 original size:16 final size:17
Alignment explanation
Indices: 72044743--72044774 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
72044733 TAAAATAATG
72044743 ATATGTACA-AATATAT
1 ATATGTACATAATATAT
72044759 ATATGTACATAATATA
1 ATATGTACATAATATA
72044775 GTTATAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (17 bp):
ATATGTACATAATATAT
Found at i:72045587 original size:15 final size:15
Alignment explanation
Indices: 72045566--72045622 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
72045556 CTTTTTTTTG
*
72045566 TTTTTTTTGCTGAAAA
1 TTTTTTTTGCTG-GAA
**
72045582 TTTTTTTTTTTGGAA
1 TTTTTTTTGCTGGAA
72045597 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
72045612 TTTTTTTTGCT
1 TTTTTTTTGCT
72045623 CTTTTTTCTC
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
15 26 0.72
16 10 0.28
ACGTcount: A:0.14, C:0.05, G:0.14, T:0.67
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:72045935 original size:30 final size:30
Alignment explanation
Indices: 72045836--72045935 Score: 103
Period size: 30 Copynumber: 3.4 Consensus size: 30
72045826 TTCTGGGGTT
** * *
72045836 AAATGTAATTTTTAGAAAATTTA-AGGTTA
1 AAATGTAATTTAAAGAAAGTTTAGAGGTCA
* * *
72045865 AAATGTAATATAAGGAAAGTTTAGAGGTCT
1 AAATGTAATTTAAAGAAAGTTTAGAGGTCA
* * *
72045895 AAGTGAAATTTAAAGAAAGTTTAGGGGTCA
1 AAATGTAATTTAAAGAAAGTTTAGAGGTCA
72045925 AAATGTAATTT
1 AAATGTAATTT
72045936 TTTTATTAAT
Statistics
Matches: 55, Mismatches: 15, Indels: 1
0.77 0.21 0.01
Matches are distributed among these distances:
29 18 0.33
30 37 0.67
ACGTcount: A:0.44, C:0.02, G:0.20, T:0.34
Consensus pattern (30 bp):
AAATGTAATTTAAAGAAAGTTTAGAGGTCA
Found at i:72046420 original size:14 final size:14
Alignment explanation
Indices: 72046397--72046431 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
72046387 TGAGTTGATT
72046397 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
72046410 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
72046424 TTTGAAAA
1 TTTGAAAA
72046432 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:72046429 original size:86 final size:87
Alignment explanation
Indices: 72046328--72046487 Score: 200
Period size: 88 Copynumber: 1.8 Consensus size: 87
72046318 TGAATTAAAA
* *
72046328 AAAAACAGAAATTG-AATAGCTC-AGCACGTAAGCC-AAGGCTCAACTCACTTCTCGCAATATGA
1 AAAAACAGAAATTGAAATACCTCGA-CACGTAA-CCTAAGGCTCAACTCACATCTCGCAATATGA
72046390 GTTGATTTTTGAAAACAGAATTTG
64 GTTGATTTTTGAAAACAGAATTTG
** * * * *
72046414 AAAAACAGATTTTGAAAATACCTCGACATGTGACCTGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGAAATTG-AAATACCTCGACACGTAACCTAAGGCTCAACTCACATCTCGCAATATGAG
72046479 TTGATTTTT
65 TTGATTTTT
72046488 TTGAAAAATA
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
86 12 0.19
87 2 0.03
88 47 0.76
89 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (87 bp):
AAAAACAGAAATTGAAATACCTCGACACGTAACCTAAGGCTCAACTCACATCTCGCAATATGAGT
TGATTTTTGAAAACAGAATTTG
Found at i:72046539 original size:79 final size:79
Alignment explanation
Indices: 72046442--72046812 Score: 258
Period size: 79 Copynumber: 4.6 Consensus size: 79
72046432 TACCTCGACA
* * * *
72046442 TGTGACCTGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAA
1 TGTGACCTGAAGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAA
72046507 AAAATACCTCAGTG
66 AAAATACCTCAGTG
* * *
72046521 TGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTG--
1 TGTGACCTGAAGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAA
* **
72046584 AAAATAGCTCAGCA
66 AAAATACCTCAGTG
* * * *
72046598 CGTGAGCC--AAGGCTCAACTCACCTCTCGTAATATGAGTCGATTTTTTTTTGAAAGGTAGAAAT
1 TGTGA-CCTGAA-GCTCAACTCACATCTCGCAATATGAGTTGA--TTTTTTTG--A---A-AAA-
* * *
72046661 TGAAAAATGGAAATTGAAAATACCTC-GACG
55 -CAAAAATTG-AA---AAAATACCTCAG-TG
* * * * * * * *
72046691 TGTGACCTGAGGCTTAACTCGCCTCTCGCAATACGAGTTGATTTTTTTG-ACAATAGAAATTG--
1 TGTGACCTGAAGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAA
* *
72046753 AAATTACCTCAGCG
66 AAAATACCTCAGTG
* *
72046767 TGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 TGTGACCTGAAGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTT
72046813 TTGAAAGACA
Statistics
Matches: 236, Mismatches: 34, Indels: 49
0.74 0.11 0.15
Matches are distributed among these distances:
74 40 0.17
76 16 0.07
77 44 0.19
78 1 0.00
79 64 0.27
81 1 0.00
82 6 0.03
84 3 0.01
85 3 0.01
87 7 0.03
91 8 0.03
92 3 0.01
93 39 0.17
94 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (79 bp):
TGTGACCTGAAGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAA
AAAATACCTCAGTG
Found at i:72046619 original size:77 final size:79
Alignment explanation
Indices: 72046451--72046645 Score: 243
Period size: 77 Copynumber: 2.5 Consensus size: 79
72046441 ATGTGACCTG
* * * *
72046451 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTG-AAAAATACCT
*** * *
72046516 CAGTGTGTGATCTGA
65 CAGCACGTGAGCTCA
* *
72046531 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTG-AAAATAGCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAAATACCTC
72046594 AGCACGTGAGC-CA
66 AGCACGTGAGCTCA
* *
72046607 AGGCTCAACTCACCTCTCGTAATATGAGTCGATTTTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
72046646 TTGAAAGGTA
Statistics
Matches: 101, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
76 2 0.02
77 51 0.50
79 47 0.47
80 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (79 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAAATACCTC
AGCACGTGAGCTCA
Found at i:72046643 original size:244 final size:239
Alignment explanation
Indices: 72046289--72046822 Score: 660
Period size: 244 Copynumber: 2.2 Consensus size: 239
72046279 AGAAATTAAA
* * **** * *
72046289 AAGCTCAACTCACCTCTTGCAATATGAGTTGA-ATTAAAAAAAAACAGAAATTGAATAGCTCAGC
1 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAATAGCTCAGC
* * *
72046353 ACGTAAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTGAAA-ACAGAATTTGAA
66 ACGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTGAAAGACAGAAATTGAA
** **
72046416 AAACAGATTTTGAAAATACCTCGACATGTGACCTGAGGCTCAACTCACATCTCGCAATGTGAGTT
131 AAACAGAAATTGAAAATACCTCGACATGTGACCTGAGGCTCAACTCACATCTCGCAATACGAGTT
* * *
72046481 GATTTTTTTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTG
196 GATTTTTTTG-AAAATAGAAATTG--AAAATACCTCAGCGTGT--CCTG
72046530 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATAGCTCA
1 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTG--AATAGCTCA
* * **
72046595 GCACGTGAGCCAAGGCTCAACTCACCTCTCGTAATATGAGTCGATTTTTTTTTGAAAGGTAGAAA
64 GCACGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGA---TTTTTTGAAAGACAGAAA
** * * * *
72046660 TTGAAAAATGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTTAACTCGCCTCTCGCAATAC
126 TTGAAAAACAGAAATTGAAAATACCTCGACATGTGACCTGAGGCTCAACTCACATCTCGCAATAC
* *
72046725 GAGTTGATTTTTTTGACAATAGAAATTGAAATTACCTCAGCGTGTCCTG
191 GAGTTGATTTTTTTGAAAATAGAAATTGAAAATACCTCAGCGTGTCCTG
*
72046774 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACA
1 AAGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGACA
72046823 TACCTCAGCA
Statistics
Matches: 252, Mismatches: 31, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
241 31 0.12
242 14 0.06
244 83 0.33
246 30 0.12
248 20 0.08
249 74 0.29
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (239 bp):
AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAATAGCTCAGC
ACGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTGAAAGACAGAAATTGAA
AAACAGAAATTGAAAATACCTCGACATGTGACCTGAGGCTCAACTCACATCTCGCAATACGAGTT
GATTTTTTTGAAAATAGAAATTGAAAATACCTCAGCGTGTCCTG
Found at i:72046718 original size:170 final size:168
Alignment explanation
Indices: 72046488--72046819 Score: 436
Period size: 170 Copynumber: 2.0 Consensus size: 168
72046478 GTTGATTTTT
* * *
72046488 TTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAAT
1 TTGAAAAATAGAAATTG-AAAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAAT
* *
72046553 ATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATAGCTCAGCACGTGAGCC-AAGGCTCAACT
65 ACGAGTTGATTTTTTTGAAA-ACAAAAATTGAAAATACCTCAG--CGTG-GCCTAAGGCTCAACT
*
72046617 CACCTCTCGTAATATGAGTCGATTTTTTTTTGAAAGGTAGAAA
126 CACCTCTCGCAATATGAGTCGATTTTTTTTTGAAAGGTAGAAA
* * * *
72046660 TTGAAAAATGGAAATTG-AAAATACCTC-GACGTGTGACCTGAGGCTTAACTCGCCTCTCGCAAT
1 TTGAAAAATAGAAATTGAAAAATACCTCAG-CGTGTGACCTGAAGCTCAACTCACCTCTCGCAAT
* * * * * *
72046723 ACGAGTTGATTTTTTTGACAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
65 ACGAGTTGATTTTTTTGAAAACAAAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACC
*
72046788 TCTCGCAATATGAGTTGATTTTTTTTTGAAAG
130 TCTCGCAATATGAGTCGATTTTTTTTTGAAAG
72046820 ACATACCTCA
Statistics
Matches: 141, Mismatches: 17, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
166 2 0.01
167 48 0.34
169 19 0.13
170 57 0.40
172 15 0.11
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (168 bp):
TTGAAAAATAGAAATTGAAAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAATA
CGAGTTGATTTTTTTGAAAACAAAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCT
CTCGCAATATGAGTCGATTTTTTTTTGAAAGGTAGAAA
Found at i:72046864 original size:66 final size:66
Alignment explanation
Indices: 72046757--72046884 Score: 202
Period size: 66 Copynumber: 1.9 Consensus size: 66
72046747 AAATTGAAAT
* *
72046757 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGAC
1 TACCTCAGCATGTCCTGAGGCTCAACCCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGAC
72046822 A
66 A
* ** *
72046823 TACCTCAGCATGTCTTGAGGCTCAACCCATTTCTCGTAATATGAGTTGATTTTTTTTTGAAA
1 TACCTCAGCATGTCCTGAGGCTCAACCCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAA
72046885 AATAGAAATT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (66 bp):
TACCTCAGCATGTCCTGAGGCTCAACCCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGAC
A
Found at i:72046996 original size:72 final size:73
Alignment explanation
Indices: 72046822--72047031 Score: 289
Period size: 72 Copynumber: 2.8 Consensus size: 73
72046812 TTTGAAAGAC
* * * *
72046822 ATACCTCAGCATGTCTTGAGGCTCAACCCATTTCTCGTAATATGAGTTGATTTTTTTTTGAAAA-
1 ATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA----ATTTTGAAAAC
72046886 ATAGAAATTGAAA
62 AT-GAAATTGAAA
* *
72046899 ATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAT-A
1 ATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACATGA
72046963 AATTGAAA
66 AATTGAAA
* *
72046971 TTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAC
1 ATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAC
72047032 GGAAGTAACA
Statistics
Matches: 124, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
72 66 0.53
73 9 0.07
74 2 0.02
77 47 0.38
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.34
Consensus pattern (73 bp):
ATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACATGA
AATTGAAA
Found at i:72054643 original size:26 final size:23
Alignment explanation
Indices: 72054599--72054645 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 23
72054589 TTTGGTAATA
*
72054599 ATAATAATAATAATAATATGTGC
1 ATAAAAATAATAATAATATGTGC
72054622 ATAAAAATACATATATATATATGT
1 ATAAAAATA-ATA-ATA-ATATGT
72054646 ATATGCATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 8 0.40
24 3 0.15
25 3 0.15
26 6 0.30
ACGTcount: A:0.53, C:0.04, G:0.06, T:0.36
Consensus pattern (23 bp):
ATAAAAATAATAATAATATGTGC
Found at i:72054785 original size:16 final size:15
Alignment explanation
Indices: 72054764--72054795 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
72054754 TAAAATAATG
72054764 ATATGTACATATATAT
1 ATATGTACATA-ATAT
72054780 ATATGTACATAATAT
1 ATATGTACATAATAT
72054795 A
1 A
72054796 GTTATAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (15 bp):
ATATGTACATAATAT
Found at i:72055616 original size:27 final size:28
Alignment explanation
Indices: 72055574--72055635 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
72055564 TGAATGTTCC
*
72055574 TTTTTTTTGG--TTTTTTTTGCTGAAAAT
1 TTTTTTTTGGAATTTTTTTGGCT-AAAAT
*
72055601 TTTTTTTTGGAATTTTTTTGGCTAGAAT
1 TTTTTTTTGGAATTTTTTTGGCTAAAAT
72055629 TTTTTTT
1 TTTTTTT
72055636 GCTCTTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
27 10 0.32
28 11 0.35
29 10 0.32
ACGTcount: A:0.15, C:0.03, G:0.15, T:0.68
Consensus pattern (28 bp):
TTTTTTTTGGAATTTTTTTGGCTAAAAT
Found at i:72055951 original size:30 final size:30
Alignment explanation
Indices: 72055852--72055951 Score: 96
Period size: 30 Copynumber: 3.4 Consensus size: 30
72055842 TTCTGGGGCT
* *
72055852 AAATGTAATTTTTAGAAAA-TTTA-GGGTTA
1 AAATGTAA-TTTAAGAAAAGTTTAGGGGTCA
* * * *
72055881 AAATGTAATTTAAGGAAAGTTTAGAGGCCT
1 AAATGTAATTTAAGAAAAGTTTAGGGGTCA
* * *
72055911 AAGTGAAATTTAAAAAAAGTTTAGGGGTCA
1 AAATGTAATTTAAGAAAAGTTTAGGGGTCA
72055941 AAATGTAATTT
1 AAATGTAATTT
72055952 TTTTATTAAA
Statistics
Matches: 54, Mismatches: 15, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
28 8 0.15
29 12 0.22
30 34 0.63
ACGTcount: A:0.43, C:0.03, G:0.20, T:0.34
Consensus pattern (30 bp):
AAATGTAATTTAAGAAAAGTTTAGGGGTCA
Found at i:72057534 original size:5 final size:5
Alignment explanation
Indices: 72057524--72057569 Score: 83
Period size: 5 Copynumber: 9.2 Consensus size: 5
72057514 ATACGGGTAG
*
72057524 GATAT GATAT GATAT AATAT GATAT GATAT GATAT GATAT GATAT G
1 GATAT GATAT GATAT GATAT GATAT GATAT GATAT GATAT GATAT G
72057570 TGATAAAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (5 bp):
GATAT
Found at i:72060531 original size:37 final size:37
Alignment explanation
Indices: 72060379--72060548 Score: 144
Period size: 37 Copynumber: 4.6 Consensus size: 37
72060369 ACCTTCAAAT
* * * **
72060379 ATTCCCTACAAAGTAAAGA-TGAAGATAAACCGGAGTG
1 ATTCCCTACAAAGAAAAGACAG-AGATGAACAAGAGTG
* * *
72060416 ATTCCCTGCAAAGCAAAGACAGAGATTAACAAGAGTG
1 ATTCCCTACAAAGAAAAGACAGAGATGAACAAGAGTG
* * * *
72060453 ATTCCCTATAAAGAAAAGATAGAGATGAATAAGAGAG
1 ATTCCCTACAAAGAAAAGACAGAGATGAACAAGAGTG
* * * *
72060490 ATTCTCTACAAAGAAAAGACGGAGACGAACATGAGTG
1 ATTCCCTACAAAGAAAAGACAGAGATGAACAAGAGTG
** * *
72060527 ATTCTTTGCAAAGAAAAAACAG
1 ATTCCCTACAAAGAAAAGACAG
72060549 CGATAAATAG
Statistics
Matches: 107, Mismatches: 25, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
37 106 0.99
38 1 0.01
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.18
Consensus pattern (37 bp):
ATTCCCTACAAAGAAAAGACAGAGATGAACAAGAGTG
Found at i:72060598 original size:37 final size:37
Alignment explanation
Indices: 72060529--72060613 Score: 89
Period size: 37 Copynumber: 2.3 Consensus size: 37
72060519 CATGAGTGAT
** *
72060529 TCTTTGCAAAGAAAAAACAGCGATAAATAGTAAAAAA
1 TCTTTGCAAAGAAAAAACAAAGATAAACAGTAAAAAA
* * * * *
72060566 TCTTTGCAAATAAAAAATAAAGATGAACAGTAACAAT
1 TCTTTGCAAAGAAAAAACAAAGATAAACAGTAAAAAA
72060603 TCTTTGACAAA
1 TCTTTG-CAAA
72060614 ATTCTCTCAA
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
37 35 0.90
38 4 0.10
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (37 bp):
TCTTTGCAAAGAAAAAACAAAGATAAACAGTAAAAAA
Found at i:72072799 original size:21 final size:21
Alignment explanation
Indices: 72072775--72072878 Score: 57
Period size: 21 Copynumber: 5.0 Consensus size: 21
72072765 TGAGTTTCAT
72072775 TTCAACCCTTATGGGTTTCTG
1 TTCAACCCTTATGGGTTTCTG
* * * * *
72072796 TTCAGCTC-TATTGAGCTTCTT
1 TTCAACCCTTA-TGGGTTTCTG
* *
72072817 TTTAACCCTTATGGGTTTCCG
1 TTCAACCCTTATGGGTTTCTG
* *** * * *
72072838 TTTAGGTCTTATGAGCTTCCG
1 TTCAACCCTTATGGGTTTCTG
*
72072859 TTCAACCTTTATGGGTTTCT
1 TTCAACCCTTATGGGTTTCT
72072879 TTTTAGCACT
Statistics
Matches: 56, Mismatches: 25, Indels: 4
0.66 0.29 0.05
Matches are distributed among these distances:
20 2 0.04
21 52 0.93
22 2 0.04
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.45
Consensus pattern (21 bp):
TTCAACCCTTATGGGTTTCTG
Found at i:72072884 original size:42 final size:42
Alignment explanation
Indices: 72072749--72072904 Score: 154
Period size: 42 Copynumber: 3.7 Consensus size: 42
72072739 TGTAACGAGC
* * * *
72072749 TTCTTTTTAACTCATATGAGTTTCAT-TTCAACCCTTATGGGT
1 TTCTGTTTAGCTCTTATGAGCTTC-TGTTCAACCCTTATGGGT
* * *
72072791 TTCTGTTCAGCTC-TATTGAGCTTCTTTTTAACCCTTATGGGT
1 TTCTGTTTAGCTCTTA-TGAGCTTCTGTTCAACCCTTATGGGT
* * * *
72072833 TTCCGTTTAGGTCTTATGAGCTTCCGTTCAACCTTTATGGGT
1 TTCTGTTTAGCTCTTATGAGCTTCTGTTCAACCCTTATGGGT
* * *
72072875 TTCTTTTTAGCACTTATGTGCTTCTGTTCA
1 TTCTGTTTAGCTCTTATGAGCTTCTGTTCA
72072905 GCCTTCGGGC
Statistics
Matches: 93, Mismatches: 18, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
41 3 0.03
42 88 0.95
43 2 0.02
ACGTcount: A:0.16, C:0.21, G:0.16, T:0.47
Consensus pattern (42 bp):
TTCTGTTTAGCTCTTATGAGCTTCTGTTCAACCCTTATGGGT
Found at i:72074896 original size:40 final size:40
Alignment explanation
Indices: 72074847--72074935 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 40
72074837 TTACAGTACC
* *
72074847 ACTTTGTGTGTAGGGCTGGATGGGTCGATTTTAT-CCCTAT
1 ACTTGGTGTGTAGGGCTGGATGGGACGATTTTATACCC-AT
* *
72074887 ACTTGGTGTGTATGGCTGGGTGGGACGATTTTATACCCAT
1 ACTTGGTGTGTAGGGCTGGATGGGACGATTTTATACCCAT
72074927 A--TGGTGTGT
1 ACTTGGTGTGT
72074936 TCGGTTGGAC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
38 8 0.18
40 33 0.75
41 3 0.07
ACGTcount: A:0.16, C:0.13, G:0.33, T:0.38
Consensus pattern (40 bp):
ACTTGGTGTGTAGGGCTGGATGGGACGATTTTATACCCAT
Found at i:72081210 original size:19 final size:19
Alignment explanation
Indices: 72081186--72081225 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
72081176 AGAAACAAAT
* * *
72081186 AGAAAAGGACAAAGATAAA
1 AGAAAAGAAAAAAGAAAAA
72081205 AGAAAAGAAAAAAGAAAAA
1 AGAAAAGAAAAAAGAAAAA
72081224 AG
1 AG
72081226 TTTGTAATGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.75, C:0.03, G:0.20, T:0.03
Consensus pattern (19 bp):
AGAAAAGAAAAAAGAAAAA
Found at i:72082392 original size:14 final size:14
Alignment explanation
Indices: 72082370--72082403 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
72082360 TTGTCGTACC
72082370 ATATATTTTTATAT
1 ATATATTTTTATAT
* *
72082384 ATATCTTTTTATGT
1 ATATATTTTTATAT
72082398 ATATAT
1 ATATAT
72082404 AATTTTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (14 bp):
ATATATTTTTATAT
Found at i:72084849 original size:40 final size:40
Alignment explanation
Indices: 72084800--72084878 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
72084790 TTATAGTACC
* *
72084800 ACTTAGTGTGTAGAGCTGGATGGGTCGATTTTATCCCCAT
1 ACTTAGTGTGCAGAGCTGGATGGGTCGATTCTATCCCCAT
* * *
72084840 ACTTGGTGTGCAGGGCTGGGTGGGTCGATTCTATCCCCA
1 ACTTAGTGTGCAGAGCTGGATGGGTCGATTCTATCCCCA
72084879 CATGGTGTGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.16, C:0.20, G:0.32, T:0.32
Consensus pattern (40 bp):
ACTTAGTGTGCAGAGCTGGATGGGTCGATTCTATCCCCAT
Found at i:72086780 original size:16 final size:15
Alignment explanation
Indices: 72086741--72086789 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
72086731 GATTTTTTTG
*
72086741 TTTATTTTTGTTTCGT
1 TTTATTTTTATTTC-T
72086757 TTTA-TTTTATCTTCT
1 TTTATTTTTAT-TTCT
72086772 TTTATTTTTTATTTCT
1 TTTA-TTTTTATTTCT
72086788 TT
1 TT
72086790 AACTTACTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
15 10 0.34
16 13 0.45
17 6 0.21
ACGTcount: A:0.10, C:0.08, G:0.04, T:0.78
Consensus pattern (15 bp):
TTTATTTTTATTTCT
Found at i:72090344 original size:40 final size:38
Alignment explanation
Indices: 72090298--72090397 Score: 128
Period size: 40 Copynumber: 2.6 Consensus size: 38
72090288 TTTTACAGTA
72090298 CCACTTGGTGTGTAGGGTTAGATGGGTCAATTTTATCC
1 CCACTTGGTGTGTAGGGTTAGATGGGTCAATTTTATCC
* * * *
72090336 CCATACTTGGTGTGTAGGGCTGGGTGGGTCGATTTTATCC
1 CC--ACTTGGTGTGTAGGGTTAGATGGGTCAATTTTATCC
* *
72090376 CCACATGGTGTGTTGGGTTAGA
1 CCACTTGGTGTGTAGGGTTAGA
72090398 CGGAGATGGT
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
38 17 0.33
40 34 0.67
ACGTcount: A:0.16, C:0.16, G:0.33, T:0.35
Consensus pattern (38 bp):
CCACTTGGTGTGTAGGGTTAGATGGGTCAATTTTATCC
Found at i:72092140 original size:36 final size:36
Alignment explanation
Indices: 72092085--72092153 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
72092075 TGTTCTTCAT
*
72092085 CTACAACTACTACCGTTGACTACTCATTTGCCTCTA
1 CTACAACTACTACCATTGACTACTCATTTGCCTCTA
*
72092121 CTACTACTACTACCATTGACTACTCATTTGCCT
1 CTACAACTACTACCATTGACTACTCATTTGCCT
72092154 TAGTCCTCCG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.25, C:0.33, G:0.07, T:0.35
Consensus pattern (36 bp):
CTACAACTACTACCATTGACTACTCATTTGCCTCTA
Found at i:72100563 original size:19 final size:19
Alignment explanation
Indices: 72100531--72100613 Score: 78
Period size: 19 Copynumber: 4.4 Consensus size: 19
72100521 GTGTACCATG
*
72100531 ATGCATTTTATGTG-TCAGT
1 ATGCACTTTATGTGCT-AGT
*
72100550 ATGCACTTTGTGTGCTAGT
1 ATGCACTTTATGTGCTAGT
* * * *
72100569 ATGTACTTTGTGTACTAGG
1 ATGCACTTTATGTGCTAGT
* *
72100588 ATGCTCTTTATGTGCCAGT
1 ATGCACTTTATGTGCTAGT
72100607 ATGCACT
1 ATGCACT
72100614 AATCTACCAA
Statistics
Matches: 51, Mismatches: 12, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
19 50 0.98
20 1 0.02
ACGTcount: A:0.19, C:0.16, G:0.23, T:0.42
Consensus pattern (19 bp):
ATGCACTTTATGTGCTAGT
Found at i:72103400 original size:34 final size:34
Alignment explanation
Indices: 72103357--72103425 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
72103347 TCAAACTTTA
72103357 TTACATGGTGAAAAGAAAAAAAGAGAGGAAAGAT
1 TTACATGGTGAAAAGAAAAAAAGAGAGGAAAGAT
72103391 TTACATGGTGAAAAGAAAAAAAGAGAGGAAAGAT
1 TTACATGGTGAAAAGAAAAAAAGAGAGGAAAGAT
72103425 T
1 T
72103426 AAGTGTTGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.55, C:0.03, G:0.26, T:0.16
Consensus pattern (34 bp):
TTACATGGTGAAAAGAAAAAAAGAGAGGAAAGAT
Found at i:72107886 original size:30 final size:30
Alignment explanation
Indices: 72107817--72107891 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
72107807 TTTAATAGTT
* * * *
72107817 TATATTTTTATAATTTTTAAAGAATTAAAA
1 TATAATTTTATTATTTTAAAAAAATTAAAA
72107847 TA-AATTTTTATTATTTTAAAAAAATTAAAA
1 TATAA-TTTTATTATTTTAAAAAAATTAAAA
72107877 TATAATTTTATTATT
1 TATAATTTTATTATT
72107892 ACTAATTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
29 1 0.03
30 36 0.92
31 2 0.05
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (30 bp):
TATAATTTTATTATTTTAAAAAAATTAAAA
Found at i:72107903 original size:33 final size:32
Alignment explanation
Indices: 72107833--72107905 Score: 89
Period size: 30 Copynumber: 2.3 Consensus size: 32
72107823 TTTATAATTT
*
72107833 TTAAAGAATTAAAATAAATTTTTATTATTTTAA
1 TTAAA-AATTAAAATAAATTTTTATTATTCTAA
72107866 --AAAAATTAAAATATAA-TTTTATTATTACTAA
1 TTAAAAATTAAAATA-AATTTTTATTATT-CTAA
72107897 TTAAAAATT
1 TTAAAAATT
72107906 TTATAAATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
30 20 0.57
31 8 0.23
33 7 0.20
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (32 bp):
TTAAAAATTAAAATAAATTTTTATTATTCTAA
Found at i:72107923 original size:22 final size:22
Alignment explanation
Indices: 72107868--72107923 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
72107858 TATTTTAAAA
*
72107868 AAATTA-AAAT-ATAATTTTAT
1 AAATTATAAATAAAAATTTTAT
* *
72107888 -TATTACTAATTAAAAATTTTAT
1 AAATTA-TAAATAAAAATTTTAT
72107910 AAATTATAAATAAA
1 AAATTATAAATAAA
72107924 CAAAATTAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 6
0.71 0.13 0.16
Matches are distributed among these distances:
19 4 0.15
21 3 0.11
22 16 0.59
23 4 0.15
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
AAATTATAAATAAAAATTTTAT
Found at i:72108370 original size:3 final size:3
Alignment explanation
Indices: 72108362--72108405 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
72108352 TTACCCTTCA
72108362 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
72108406 GTAGTCTAGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:72109569 original size:21 final size:23
Alignment explanation
Indices: 72109545--72109602 Score: 70
Period size: 21 Copynumber: 2.7 Consensus size: 23
72109535 AGATTTTATA
72109545 ATAAAAAAAT-CATAC-AAAATT
1 ATAAAAAAATGCATACAAAAATT
72109566 AT--AAAAATGCATACAAAAATT
1 ATAAAAAAATGCATACAAAAATT
* *
72109587 ATAAATAAATGTATAC
1 ATAAAAAAATGCATAC
72109603 TCATTTTTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
19 6 0.19
20 5 0.16
21 10 0.32
23 10 0.32
ACGTcount: A:0.62, C:0.09, G:0.03, T:0.26
Consensus pattern (23 bp):
ATAAAAAAATGCATACAAAAATT
Found at i:72109671 original size:19 final size:19
Alignment explanation
Indices: 72109638--72109675 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
72109628 ATTTATGGAC
72109638 TAAAATAATAATTTTATAAA
1 TAAAATAATAATTTT-TAAA
*
72109658 TAAAA-AATATTTTTTAAA
1 TAAAATAATAATTTTTAAA
72109676 AACCCCACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 8 0.47
20 5 0.29
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TAAAATAATAATTTTTAAA
Found at i:72109675 original size:18 final size:20
Alignment explanation
Indices: 72109638--72109675 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
72109628 ATTTATGGAC
72109638 TAAAATAATAATTTTATAAA
1 TAAAATAATAATTTTATAAA
*
72109658 TAAAA-AAT-ATTTTTTAAA
1 TAAAATAATAATTTTATAAA
72109676 AACCCCACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.53
19 3 0.18
20 5 0.29
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
TAAAATAATAATTTTATAAA
Found at i:72112662 original size:33 final size:33
Alignment explanation
Indices: 72112620--72112689 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
72112610 TATTAATGAG
*
72112620 TAATGTTAAGTTTAAATAATGATGATAATACAT
1 TAATGTTAAGTTTAAATAATGATGATAACACAT
** *
72112653 TAATGTTAAGTTTATGTAATGATGATGACACAT
1 TAATGTTAAGTTTAAATAATGATGATAACACAT
72112686 TAAT
1 TAAT
72112690 ATGATGACAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.41, C:0.04, G:0.14, T:0.40
Consensus pattern (33 bp):
TAATGTTAAGTTTAAATAATGATGATAACACAT
Found at i:72114607 original size:217 final size:218
Alignment explanation
Indices: 72114190--72115718 Score: 1396
Period size: 217 Copynumber: 6.9 Consensus size: 218
72114180 AAAGTTACGT
* * * * * * * *
72114190 CTGTTCACTACCAAA-CTGATAATAAGTATGTGCAAAAGTCAATGATTGTCGTATCACTTCAATA
1 CTGTTCACTAACAAATC-GACAATAAATATGAGGAAAAGTTAATGATTGTCATATCGCTTCAATA
* * ** * * ** ** *
72114254 TTCAATCACATGGAAACATGTATCACATTCATTAATGTAAAAGTCACAAATCCCTGAAAATCAAA
65 CTCAATCACATGAAAATGTGTATCACATTTATTAATGCAAAAGTTGCAAATCCCAAAAAATCAGA
* * ** *
72114319 ACGCTTATTACTACACATGTTCCTAACATACGTTAATTATAAGTA-CAAGTTGACTTTCATTGTT
130 ACGCTTATTACCACGCATGTTCCTAACATACGTTAATTATAAGTACCAA-TTGACTTTCAAGGTC
*
72114383 GTCACTCATGTTCCCAACGTTATGA
194 ATCACTCATGTTCCCAACGTTATGA
* * * *
72114408 CAG-TCACTAGCAAATCGACAATAAATATGAGGAAAAGTTAATGATTGTTATATCGATTCAATAC
1 CTGTTCACTAACAAATCGACAATAAATATGAGGAAAAGTTAATGATTGTCATATCGCTTCAATAC
* * *
72114472 TCAATCACATGAAAATGTGCATTACATTTATTAATGCAAAAGTTGCAAATCCCAAAAAATCAGAG
66 TCAATCACATGAAAATGTGTATCACATTTATTAATGCAAAAGTTGCAAATCCCAAAAAATCAGAA
* *
72114537 CGCTTGTTACCACGCATGTTCCTAACATACGCTAATTATAAGTACCAATTGACTTTCAAGGTCAT
131 CGCTTATTACCACGCATGTTCCTAACATACGTTAATTATAAGTACCAATTGACTTTCAAGGTCAT
* *
72114602 CACTCATGTTCCCAACATTTTGA
196 CACTCATGTTCCCAACGTTATGA
* * **
72114625 TTGTTCACTAACAAATCGATAATAAATACAAGGAAAAGTTAATGATTGTCATATCGCTTCAATAA
1 CTGTTCACTAACAAATCGACAATAAATATGAGGAAAAGTTAATGATTGTCATATCG---C--T--
* * *
72114690 TCAAACATATTGCTTCAATAATCAATCACATGGAAACGTGTATCACATTTATTAATGCAAAAGTT
59 TC--A-ATA---C-TC---AATC-A-CA-T-GAAAATGTGTATCACATTTATTAATGCAAAAGTT
* ** * * * * * * * * * **
72114755 GCAAAACCCGCAAAA-CCGAACCGTTTATTACCATGCGTGTTCCCAACGTATGCTAATCATAAAC
110 GCAAATCCCAAAAAATCAGAA-CGCTTATTACCACGCATGTTCCTAACATACGTTAATTATAAGT
* * *
72114819 ACCAACTGACCTTTCAAGGTCATCA-TCATGTTCTCAACGTTATGG
174 ACCAATTGA-CTTTCAAGGTCATCACTCATGTTCCCAACGTTATGA
* * * * *
72114864 CTGCTCACTAACAGA-CTGACAATAAGTATGTA-CAAAATTTAATGATTGTCGA-ATCGCTTCAA
1 CTGTTCACTAACAAATC-GACAATAAATATG-AGGAAAAGTTAATGATTGTC-ATATCGCTTCAA
* * * * ** ** * **
72114926 TATTCAATCACATGGAAACGTGTATCACATTCATTAATGTTAAAGTCACAACTCCCTGAAAATCA
63 TACTCAATCACATGAAAATGTGTATCACATTTATTAATGCAAAAGTTGCAAATCCCAAAAAATCA
* * * *
72114991 GAATGCTTATTACCATGCATGTTCCTAACATATGTTAATTATAAGTACCAGTTGACTTTCAAGGT
128 GAACGCTTATTACCACGCATGTTCCTAACATACGTTAATTATAAGTACCAATTGACTTTCAAGGT
* *
72115056 CACCACTTATGTTCCCAACGTTATGA
193 CATCACTCATGTTCCCAACGTTATGA
* * *
72115082 CTGTT-ACTAGCAAATCGACAATAAATACGAGGAAAAGTTAATGATTGTCATGTCGCTTCAATAC
1 CTGTTCACTAACAAATCGACAATAAATATGAGGAAAAGTTAATGATTGTCATATCGCTTCAATAC
* * ***
72115146 TCAGTCACATGAAAATGTATATCACATTTATTAATGCAAAA-TTCGCAAATCCTTGAAAATCAGA
66 TCAATCACATGAAAATGTGTATCACATTTATTAATGCAAAAGTT-GCAAATCCCAAAAAATCAGA
* *
72115210 ACGCTTATTACCACGCATGTTCCTAACATACGTTAATTATAAGTACCAAATGACTTTCAAGGTCG
130 ACGCTTATTACCACGCATGTTCCTAACATACGTTAATTATAAGTACCAATTGACTTTCAAGGTCA
*
72115275 TCACTCATGTTCCCAACGTTCTGA
195 TCACTCATGTTCCCAACGTTATGA
* * * *
72115299 CTGTTCACTAACAAATCAACAATAAATATGAGGAAAAGTTAATGATTGTCACATTGCTTTAATAC
1 CTGTTCACTAACAAATCGACAATAAATATGAGGAAAAGTTAATGATTGTCATATCGCTTCAATAC
* * * * * * *
72115364 TCAGTCACATGGAAACGTGTATCAGATTTATTAATGCAAAAGTTGCAAA-ACCTAAAAAT-TGCA
66 TCAATCACATGAAAATGTGTATCACATTTATTAATGCAAAAGTTGCAAATCCCAAAAAATCAG-A
* * * * * * * * *
72115427 ACGCTTATTACTACACATGTTCCCAACCTATGCTAATCATAAGCACCATTTGACCTTTCAAGGTC
130 ACGCTTATTACCACGCATGTTCCTAACATACGTTAATTATAAGTACCAATTGA-CTTTCAAGGTC
* * *
72115492 GTCACTCATGTTCCCAATGTTATGG
194 ATCACTCATGTTCCCAACGTTATGA
* ** * * *
72115517 CTGCTCACTAACAACCCGACAATAAATATGTGGAAAAATTAATAATTGTCATATCGCTTCAATAC
1 CTGTTCACTAACAAATCGACAATAAATATGAGGAAAAGTTAATGATTGTCATATCGCTTCAATAC
* ** ** * *
72115582 TCAATCACATGGAAACATGTATCAC-TTTCATTAATGCAAAAGTCACAAAAACCC-AAAAATCAA
66 TCAATCACATGAAAATGTGTATCACATTT-ATTAATGCAAAAGTTGC-AAATCCCAAAAAATCAG
* * * * * * * *
72115645 AATGCTTATGACCACACATGTTCCTAACATATGTTGATCATAA-TACCATTTGACCTTTTAAGGT
129 AACGCTTATTACCACGCATGTTCCTAACATACGTTAATTATAAGTACCAATTGA-CTTTCAAGGT
**
72115709 TGTCACTCAT
193 CATCACTCAT
72115719 ATCTCTAAAA
Statistics
Matches: 1079, Mismatches: 189, Indels: 86
0.80 0.14 0.06
Matches are distributed among these distances:
216 4 0.00
217 424 0.39
218 403 0.37
219 51 0.05
220 4 0.00
221 1 0.00
222 4 0.00
223 1 0.00
225 4 0.00
227 1 0.00
228 3 0.00
229 3 0.00
230 1 0.00
231 1 0.00
232 4 0.00
234 1 0.00
235 4 0.00
236 2 0.00
237 2 0.00
238 4 0.00
239 140 0.13
240 17 0.02
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30
Consensus pattern (218 bp):
CTGTTCACTAACAAATCGACAATAAATATGAGGAAAAGTTAATGATTGTCATATCGCTTCAATAC
TCAATCACATGAAAATGTGTATCACATTTATTAATGCAAAAGTTGCAAATCCCAAAAAATCAGAA
CGCTTATTACCACGCATGTTCCTAACATACGTTAATTATAAGTACCAATTGACTTTCAAGGTCAT
CACTCATGTTCCCAACGTTATGA
Found at i:72114698 original size:21 final size:21
Alignment explanation
Indices: 72114674--72114714 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
72114664 TAATGATTGT
72114674 CATATCGCTTCAATAATCAAA
1 CATATCGCTTCAATAATCAAA
*
72114695 CATATTGCTTCAATAATCAA
1 CATATCGCTTCAATAATCAA
72114715 TCACATGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.22, G:0.05, T:0.32
Consensus pattern (21 bp):
CATATCGCTTCAATAATCAAA
Found at i:72114908 original size:239 final size:239
Alignment explanation
Indices: 72114464--72115585 Score: 590
Period size: 218 Copynumber: 5.0 Consensus size: 239
72114454 GTTATATCGA
* * * *
72114464 TTCAATACTCAATCACATGAAAATGTGCATTACATTTATTAATGCAAAAGTTGCAAATCCCAAAA
1 TTCAATAATCAATCACATGAAAACGTGCATCACATTTATTAATGCAAAAGTTGCAAAACCCAAAA
* * * * * ** *
72114529 AATCAGAGCGCTTGTTACCACGCATGTTCCTAACATACGCTAATTATAAGTACCAATTGACTTTC
66 AACCAGACCGCTTATTACCACGCATGTTCCCAACATACGCTAATCATAAACACCAACTGACTTTC
* * * * *
72114594 AAGGTCATCACTCATGTTCCCAACATTTTGATTGTTCACTAACAAATCGATAATAAATACAAGGA
131 AAGGTCATCACTCATGTTCCCAACATTATGACTGCTCACTAACAAATCGACAATAAATACAAGCA
72114659 AAAGTTAATGATTGTC-ATATCGCTTCAATAATCAAACATATTGC
196 AAAGTTAATGATTGTCGA-ATCGCTTCAATAATCAAACATATTGC
* * **
72114703 TTCAATAATCAATCACATGGAAACGTGTATCACATTTATTAATGCAAAAGTTGCAAAACCCGCAA
1 TTCAATAATCAATCACATGAAAACGTGCATCACATTTATTAATGCAAAAGTTGCAAAACCCAAAA
* * * * *
72114768 AACC-GAACCGTTTATTACCATGCGTGTTCCCAACGTATGCTAATCATAAACACCAACTGACCTT
66 AACCAG-ACCGCTTATTACCACGCATGTTCCCAACATACGCTAATCATAAACACCAACTGA-CTT
* * * * * **
72114832 TCAAGGTCATCA-TCATGTTCTCAACGTTATGGCTGCTCACTAACAGA-CTGACAATAAGTATGT
129 TCAAGGTCATCACTCATGTTCCCAACATTATGACTGCTCACTAACAAATC-GACAATAAATA-CA
*
72114895 A-CAAAATTTAATGATTGTCGAATCG---C--T--T----CA-A----
192 AGCAAAAGTTAATGATTGTCGAATCGCTTCAATAATCAAACATATTGC
* * * ** ** ** **
72114926 -T--AT--TCAATCACATGGAAACGTGTATCACATTCATTAATGTTAAAGTCACAACTCCCTGAA
1 TTCAATAATCAATCACATGAAAACGTGCATCACATTTATTAATGCAAAAGTTGCAAAACCCAAAA
* ** * * * * * ** **
72114986 AATCAGAATGCTTATTACCATGCATGTTCCTAACATATGTTAATTATAAGTACCAGTTGACTTTC
66 AACCAGACCGCTTATTACCACGCATGTTCCCAACATACGCTAATCATAAACACCAACTGACTTTC
* * * * * * *
72115051 AAGGTCACCACTTATGTTCCCAACGTTATGACTG-TTACTAGCAAATCGACAATAAATACGAGGA
131 AAGGTCATCACTCATGTTCCCAACATTATGACTGCTCACTAACAAATCGACAATAAATACAAGCA
72115115 AAAGTTAATGATTGTC--AT-G---------T----C-----GC
196 AAAGTTAATGATTGTCGAATCGCTTCAATAATCAAACATATTGC
* * * ** * ***
72115138 TTCAATACTCAGTCACATGAAAATGTATATCACATTTATTAATGCAAAA-TTCGCAAATCCTTGA
1 TTCAATAATCAATCACATGAAAACGTGCATCACATTTATTAATGCAAAAGTT-GCAAAACCCAAA
* * * * * ** *
72115202 AAATCAGAACGCTTATTACCACGCATGTTCCTAACATACGTTAATTATAAGTACCAAATGACTTT
65 AAACCAGACCGCTTATTACCACGCATGTTCCCAACATACGCTAATCATAAACACCAACTGACTTT
* * * * * ** *
72115267 CAAGGTCGTCACTCATGTTCCCAACGTTCTGACTGTTCACTAACAAATCAACAATAAATATGAGG
130 CAAGGTCATCACTCATGTTCCCAACATTATGACTGCTCACTAACAAATCGACAATAAATACAAGC
72115332 AAAAGTTAATGA---T----T-G---------TC--AC--ATTGC
195 AAAAGTTAATGATTGTCGAATCGCTTCAATAATCAAACATATTGC
* * * * * * *
72115356 TTTAATACTCAGTCACATGGAAACGTGTATCAGATTTATTAATGCAAAAGTTGCAAAACCTAAAA
1 TTCAATAATCAATCACATGAAAACGTGCATCACATTTATTAATGCAAAAGTTGCAAAACCCAAAA
** * * * * * **
72115421 ATTGCA-A-CGCTTATTACTACACATGTTCCCAACCTATGCTAATCATAAGCACCATTTGACCTT
66 A-ACCAGACCGCTTATTACCACGCATGTTCCCAACATACGCTAATCATAAACACCAACTGA-CTT
* ** * ** ***
72115484 TCAAGGTCGTCACTCATGTTCCCAATGTTATGGCTGCTCACTAACAACCCGACAATAAATATGTG
129 TCAAGGTCATCACTCATGTTCCCAACATTATGACTGCTCACTAACAAATCGACAATAAATACAAG
* * * *
72115549 GAAAAATTAATAATTGTC-ATATCGCTTCAATACTCAA
194 CAAAAGTTAATGATTGTCGA-ATCGCTTCAATAATCAA
72115586 TCACATGGAA
Statistics
Matches: 716, Mismatches: 122, Indels: 92
0.77 0.13 0.10
Matches are distributed among these distances:
212 2 0.00
213 4 0.01
214 1 0.00
215 6 0.01
216 2 0.00
217 224 0.31
218 280 0.39
219 5 0.01
220 2 0.00
221 1 0.00
222 1 0.00
225 1 0.00
226 1 0.00
227 1 0.00
228 2 0.00
232 1 0.00
234 1 0.00
235 2 0.00
236 1 0.00
238 2 0.00
239 159 0.22
240 17 0.02
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30
Consensus pattern (239 bp):
TTCAATAATCAATCACATGAAAACGTGCATCACATTTATTAATGCAAAAGTTGCAAAACCCAAAA
AACCAGACCGCTTATTACCACGCATGTTCCCAACATACGCTAATCATAAACACCAACTGACTTTC
AAGGTCATCACTCATGTTCCCAACATTATGACTGCTCACTAACAAATCGACAATAAATACAAGCA
AAAGTTAATGATTGTCGAATCGCTTCAATAATCAAACATATTGC
Found at i:72115079 original size:218 final size:219
Alignment explanation
Indices: 72114695--72115718 Score: 1113
Period size: 218 Copynumber: 4.7 Consensus size: 219
72114685 AATAATCAAA
* * *
72114695 CATATTGCTTCAATAATCAATCACATGGAAACGTGTATCACATTTATTAATGCAAAAGTTGCAAA
1 CATATCGCTTCAATACTCAATCACATGGAAACGTGTATCACATTTATTAATGCAAAAGTCGCAAA
* * * * * * * **
72114760 ACCC-GCAAAA-CCGAACCGTTTATTACCATGCGTGTTCCCAACGTATGCTAATCATAAACACCA
66 ACCCTG-AAAATCAGAA-CGCTTATTACCACGCATGTTCCTAACATATGTTAATCATAAGTACCA
* * * *
72114823 ACTGACCTTTCAAGGTCATCA-TCATGTTCTCAACGTTATGGCTGCTCACTAACAGA-CTGACAA
129 ATTGACCTTTCAAGGTCATCACTCATGTTCCCAACGTTATGACTGCTCACTAACAAATC-GACAA
* * *
72114886 TAAGTATGTA-CAAAATTTAATGATTGT
193 TAAATATG-AGGAAAAGTTAATGATTGT
* * ** *
72114913 CGA-ATCGCTTCAATATTCAATCACATGGAAACGTGTATCACATTCATTAATGTTAAAGTCACAA
1 C-ATATCGCTTCAATACTCAATCACATGGAAACGTGTATCACATTTATTAATGCAAAAGTCGCAA
** * * * *
72114977 CTCCCTGAAAATCAGAATGCTTATTACCATGCATGTTCCTAACATATGTTAATTATAAGTACCAG
65 AACCCTGAAAATCAGAACGCTTATTACCACGCATGTTCCTAACATATGTTAATCATAAGTACCAA
* * * *
72115042 TTGA-CTTTCAAGGTCACCACTTATGTTCCCAACGTTATGACTG-TTACTAGCAAATCGACAATA
130 TTGACCTTTCAAGGTCATCACTCATGTTCCCAACGTTATGACTGCTCACTAACAAATCGACAATA
*
72115105 AATACGAGGAAAAGTTAATGATTGT
195 AATATGAGGAAAAGTTAATGATTGT
* * * * * *
72115130 CATGTCGCTTCAATACTCAGTCACATGAAAATGTATATCACATTTATTAATGCAAAATTCGCAAA
1 CATATCGCTTCAATACTCAATCACATGGAAACGTGTATCACATTTATTAATGCAAAAGTCGCAAA
* * * * *
72115195 TCCTTGAAAATCAGAACGCTTATTACCACGCATGTTCCTAACATACGTTAATTATAAGTACCAAA
66 ACCCTGAAAATCAGAACGCTTATTACCACGCATGTTCCTAACATATGTTAATCATAAGTACCAAT
* * * *
72115260 TGA-CTTTCAAGGTCGTCACTCATGTTCCCAACGTTCTGACTGTTCACTAACAAATCAACAATAA
131 TGACCTTTCAAGGTCATCACTCATGTTCCCAACGTTATGACTGCTCACTAACAAATCGACAATAA
72115324 ATATGAGGAAAAGTTAATGATTGT
196 ATATGAGGAAAAGTTAATGATTGT
* * * * * *
72115348 CACATTGCTTTAATACTCAGTCACATGGAAACGTGTATCAGATTTATTAATGCAAAAGTTGCAAA
1 CATATCGCTTCAATACTCAATCACATGGAAACGTGTATCACATTTATTAATGCAAAAGTCGCAAA
* * * * * * * * *
72115413 A-CCTAAAAAT-TGCAACGCTTATTACTACACATGTTCCCAACCTATGCTAATCATAAGCACCAT
66 ACCCTGAAAATCAG-AACGCTTATTACCACGCATGTTCCTAACATATGTTAATCATAAGTACCAA
* * * **
72115476 TTGACCTTTCAAGGTCGTCACTCATGTTCCCAATGTTATGGCTGCTCACTAACAACCCGACAATA
130 TTGACCTTTCAAGGTCATCACTCATGTTCCCAACGTTATGACTGCTCACTAACAAATCGACAATA
* * *
72115541 AATATGTGGAAAAATTAATAATTGT
195 AATATGAGGAAAAGTTAATGATTGT
* *
72115566 CATATCGCTTCAATACTCAATCACATGGAAACATGTATCAC-TTTCATTAATGCAAAAGTCACAA
1 CATATCGCTTCAATACTCAATCACATGGAAACGTGTATCACATTT-ATTAATGCAAAAGTCGC-A
* * * * * *
72115630 AAACCC-AAAAATCAAAATGCTTATGACCACACATGTTCCTAACATATGTTGATCATAA-TACCA
64 AAACCCTGAAAATCAGAACGCTTATTACCACGCATGTTCCTAACATATGTTAATCATAAGTACCA
* * **
72115693 TTTGACCTTTTAAGGTTGTCACTCAT
129 ATTGACCTTTCAAGGTCATCACTCAT
72115719 ATCTCTAAAA
Statistics
Matches: 680, Mismatches: 112, Indels: 28
0.83 0.14 0.03
Matches are distributed among these distances:
216 3 0.00
217 250 0.37
218 373 0.55
219 52 0.08
220 2 0.00
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30
Consensus pattern (219 bp):
CATATCGCTTCAATACTCAATCACATGGAAACGTGTATCACATTTATTAATGCAAAAGTCGCAAA
ACCCTGAAAATCAGAACGCTTATTACCACGCATGTTCCTAACATATGTTAATCATAAGTACCAAT
TGACCTTTCAAGGTCATCACTCATGTTCCCAACGTTATGACTGCTCACTAACAAATCGACAATAA
ATATGAGGAAAAGTTAATGATTGT
Found at i:72116096 original size:20 final size:20
Alignment explanation
Indices: 72116071--72116111 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
72116061 GCTTCCAGTC
72116071 ACATCTTAGTGCACTTGTTG
1 ACATCTTAGTGCACTTGTTG
72116091 ACATCTTAGTGCACTTGTTG
1 ACATCTTAGTGCACTTGTTG
72116111 A
1 A
72116112 GAGTCCTCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.39
Consensus pattern (20 bp):
ACATCTTAGTGCACTTGTTG
Found at i:72120404 original size:30 final size:29
Alignment explanation
Indices: 72120363--72120446 Score: 96
Period size: 33 Copynumber: 2.7 Consensus size: 29
72120353 AATGGAGGAT
* *
72120363 TTAATTAATTTTTAATTATTTTATAAGGTG
1 TTAATTGATTTTTAATTATTTTA-AAAGTG
72120393 TTAATTGATTTTTTAAAATTATTTTAAAAGTG
1 TTAATTGA-TTTTT--AATTATTTTAAAAGTG
*
72120425 TCTAAATGATTTTTAATTATTT
1 T-TAATTGATTTTTAATTATTT
72120447 AATCATAAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
30 15 0.32
31 5 0.11
32 11 0.23
33 16 0.34
ACGTcount: A:0.35, C:0.01, G:0.08, T:0.56
Consensus pattern (29 bp):
TTAATTGATTTTTAATTATTTTAAAAGTG
Found at i:72120670 original size:20 final size:19
Alignment explanation
Indices: 72120625--72120671 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
72120615 TAAAAACTAA
*
72120625 AAAAAAATTTATTAAAAGT
1 AAAAAAAGTTATTAAAAGT
72120644 AATAAAAAGTTA-TAAAATTGT
1 AA-AAAAAGTTATTAAAA--GT
72120665 AAAAAAA
1 AAAAAAA
72120672 ATTTGGTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 7 0.29
20 13 0.54
21 4 0.17
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (19 bp):
AAAAAAAGTTATTAAAAGT
Found at i:72125087 original size:28 final size:28
Alignment explanation
Indices: 72125055--72125114 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
72125045 AACCACATCA
72125055 TTTTGCCTCAATCCTAAAGATAATCTAC
1 TTTTGCCTCAATCCTAAAGATAATCTAC
72125083 TTTTGCCTCAATCCTAAAGATAATCTAC
1 TTTTGCCTCAATCCTAAAGATAATCTAC
72125111 TTTT
1 TTTT
72125115 AGAGCCCTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (28 bp):
TTTTGCCTCAATCCTAAAGATAATCTAC
Found at i:72125619 original size:6 final size:6
Alignment explanation
Indices: 72125608--72125654 Score: 85
Period size: 6 Copynumber: 7.7 Consensus size: 6
72125598 AGATTATAAT
72125608 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAAA ATAAAA ATAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA AT-AAAA ATAAAA ATAA
72125655 TGGATAATGG
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 34 0.85
7 6 0.15
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
ATAAAA
Found at i:72127170 original size:3 final size:3
Alignment explanation
Indices: 72127164--72127190 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
72127154 ATAAGAGTAT
72127164 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
72127191 TCTACAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:72127562 original size:26 final size:27
Alignment explanation
Indices: 72127506--72127568 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 27
72127496 TAGCAATAAT
*
72127506 AATACTAATATAATAAATGTACTAGTG
1 AATAATAATATAATAAATGTACTAGTG
*
72127533 -ATAATAATATAAT-AATGGTAGTA-TG
1 AATAATAATATAATAAAT-GTACTAGTG
72127558 AATAAT-ATATA
1 AATAATAATATA
72127569 CAAAAATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 10 0.31
26 22 0.69
ACGTcount: A:0.51, C:0.03, G:0.11, T:0.35
Consensus pattern (27 bp):
AATAATAATATAATAAATGTACTAGTG
Found at i:72127625 original size:22 final size:23
Alignment explanation
Indices: 72127600--72127646 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
72127590 ATGATATATG
* *
72127600 AATATATACAT-ATATGTATTAA
1 AATATATACATGATATATATAAA
72127622 AATATATACATGATATATATAAA
1 AATATATACATGATATATATAAA
72127645 AA
1 AA
72127647 ATACAATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.36
Consensus pattern (23 bp):
AATATATACATGATATATATAAA
Found at i:72127894 original size:27 final size:26
Alignment explanation
Indices: 72127836--72127895 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 26
72127826 TACATAGTAT
* *
72127836 ATATACATATAATATAATTATTAAGA
1 ATATACATAGAATATAAGTATTAAGA
*
72127862 AAATACATAGAATATATAGTATTAAGA
1 ATATACATAGAATATA-AGTATTAAGA
72127889 ATATACA
1 ATATACA
72127896 CAATACGTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 14 0.48
27 15 0.52
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (26 bp):
ATATACATAGAATATAAGTATTAAGA
Found at i:72128160 original size:16 final size:16
Alignment explanation
Indices: 72128127--72128176 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
72128117 AATTATAGGC
72128127 ATAATA-AT-AAATATA
1 ATAATATATGAAA-ATA
72128142 ATAATATATGAAAATA
1 ATAATATATGAAAATA
*
72128158 ATACTATATGTAAAA-A
1 ATAATATATG-AAAATA
72128174 ATA
1 ATA
72128177 TGTATTGGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
15 6 0.19
16 18 0.58
17 7 0.23
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (16 bp):
ATAATATATGAAAATA
Found at i:72129437 original size:3 final size:3
Alignment explanation
Indices: 72129424--72129506 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
72129414 GAGGGCATAT
72129424 ATA AT- ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA ATA
* *
72129468 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
72129507 AACAAAGCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 9 0.14
3 45 0.69
4 9 0.14
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:72129446 original size:12 final size:12
Alignment explanation
Indices: 72129422--72129503 Score: 69
Period size: 12 Copynumber: 6.5 Consensus size: 12
72129412 GAGAGGGCAT
72129422 ATATAATATAATA
1 ATATAA-ATAATA
72129435 ATATAAATAATA
1 ATATAAATAATA
72129447 ATATATACATGAGA-A
1 ATATA-A-AT-A-ATA
72129462 ATA-ATAATAATA
1 ATATA-AATAATA
72129474 ATATAAATAATA
1 ATATAAATAATA
* *
72129486 GTAAAAATAATA
1 ATATAAATAATA
*
72129498 AAATAA
1 ATATAA
72129504 TAAAACAAAG
Statistics
Matches: 58, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
11 1 0.02
12 36 0.62
13 10 0.17
14 5 0.09
15 5 0.09
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:72129465 original size:21 final size:18
Alignment explanation
Indices: 72129424--72129506 Score: 73
Period size: 18 Copynumber: 4.6 Consensus size: 18
72129414 GAGGGCATAT
*
72129424 ATAAT-ATAATAATATAA
1 ATAATAATAATAATAGAA
72129441 ATAATAATATATACATGAGAA
1 ATAATAATA-ATA-AT-AGAA
*
72129462 ATAATAATAATAATATAA
1 ATAATAATAATAATAGAA
* *
72129480 ATAATAGTAAAAATA-ATA
1 ATAATAATAATAATAGA-A
72129498 A-AATAATAA
1 ATAATAATAA
72129507 AACAAAGCTC
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
17 13 0.23
18 21 0.38
19 5 0.09
20 5 0.09
21 12 0.21
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (18 bp):
ATAATAATAATAATAGAA
Found at i:72129494 original size:27 final size:27
Alignment explanation
Indices: 72129422--72129507 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
72129412 GAGAGGGCAT
* *
72129422 ATATAATATAATAATATAAATAATAAT-
1 ATATAA-ATAATAGTAAAAATAATAATA
* *
72129449 ATATACAT--GAG-AAATAATAATAATA
1 ATATAAATAATAGTAAA-AATAATAATA
72129474 ATATAAATAATAGTAAAAATAATAA-A
1 ATATAAATAATAGTAAAAATAATAATA
72129500 ATAATAAA
1 AT-ATAAA
72129508 ACAAAGCTCT
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 7 0.15
26 5 0.11
27 20 0.43
28 3 0.06
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATATAAATAATAGTAAAAATAATAATA
Found at i:72129870 original size:21 final size:22
Alignment explanation
Indices: 72129839--72129936 Score: 83
Period size: 22 Copynumber: 4.4 Consensus size: 22
72129829 TTTTTTCCAA
*
72129839 AAAAACAAAAAAAAACACCTCC
1 AAAAACAAAAAAAACCACCTCC
*
72129861 AAAAACAAAAAAAACCTCCTCC
1 AAAAACAAAAAAAACCACCTCC
* **
72129883 -AAAACAAAGAACAATCCTTCTCC
1 AAAAACAAA-AA-AAACCACCTCC
** *
72129906 AAAAA-ACCAAAAACCCCCTCC
1 AAAAACAAAAAAAACCACCTCC
72129927 TAAAAACAAA
1 -AAAAACAAA
72129937 GTCTTGAATG
Statistics
Matches: 60, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
21 16 0.27
22 29 0.48
23 11 0.18
24 4 0.07
ACGTcount: A:0.59, C:0.31, G:0.01, T:0.09
Consensus pattern (22 bp):
AAAAACAAAAAAAACCACCTCC
Found at i:72130074 original size:4 final size:4
Alignment explanation
Indices: 72130065--72130091 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
72130055 GGCCAAGGTT
72130065 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
72130092 TTTGTGTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:72130459 original size:44 final size:45
Alignment explanation
Indices: 72130396--72130895 Score: 404
Period size: 44 Copynumber: 11.4 Consensus size: 45
72130386 TGCTTCACTG
* * * * * *
72130396 TAAGCACAGGAATGTCAAATTTGCTATCTTCGATC-CGTTCCTTA
1 TAAGCACAGGGATGCCAAATCTGATATCTTCGATCTTGTTCCCTA
* * * * *
72130440 TAAGCACAGGGATCCCAAATCTGCTGTTTTC-AACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGATATCTTCGATCTTGTTCCCTA
* * * * *
72130484 TAAGCACAGGAATGTC--ATGCTGAAATCTTCGATCTAGTTCACTGA
1 TAAGCACAGGGATGCCAAAT-CTGATATCTTCGATCTTGTTCCCT-A
* * * * *
72130529 -AAGCACAGGAATGTCAGATCTGTTATCTTCGATC-CGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGATATCTTCGATCTTGTTCCCTA
* * * *
72130572 TAAGCACAGGGATGCCAAATCTGTTGTTTTC-AACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGATATCTTCGATCTTGTTCCCTA
* * *
72130616 TAAGCACAGGGATGCCAAATCTGATGTTTTC-AACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGATATCTTCGATCTTGTTCCCTA
* * * *
72130660 TAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-TGCTTCACTG
1 TAAGCACAGGGATGCCAAAT-CTGATATCTTCGATCTTG-TTCCCTA
* * * * *
72130704 TAAGCACAGGAATGTCAGATCTGCTATCTTCGATC-CGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGATATCTTCGATCTTGTTCCCTA
* * *
72130748 TAAGCACAGGGATGCCAAATCTGATGTTTTC-AACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGATATCTTCGATCTTGTTCCCTA
* * * *
72130792 TAAGCACAGGAATGCCAAATCTGATGTTTTC-AACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGATATCTTCGATCTTGTTCCCTA
* * *
72130836 TAAGCACAGGGATGCC--ATGCTAAAATCTTC-AACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAAT-CTGATATCTTCGATCTTGTTCCCTA
*
72130879 TAAGTACAGGGATGCCA
1 TAAGCACAGGGATGCCA
72130896 TGCTGAAATC
Statistics
Matches: 379, Mismatches: 61, Indels: 32
0.80 0.13 0.07
Matches are distributed among these distances:
42 6 0.02
43 58 0.15
44 284 0.75
45 27 0.07
46 4 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (45 bp):
TAAGCACAGGGATGCCAAATCTGATATCTTCGATCTTGTTCCCTA
Found at i:72130665 original size:132 final size:132
Alignment explanation
Indices: 72130396--72130895 Score: 505
Period size: 132 Copynumber: 3.8 Consensus size: 132
72130386 TGCTTCACTG
* * * *
72130396 TAAGCACAGGAATGTCAAATTTGCTATCTTCGATCCGTTCCTTATAAGCACAGGGATCCCAAATC
1 TAAGCACAGGAATGTCAAATCTGATATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATC
* * * * ** * * *
72130461 TGCTGTTTTCAACTTGTTCCCTATAAGCACAGGAATGTC--ATGCTGAAATCTTCGATCTAGTTC
66 TGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATGTTTTC-AACTTGTTC
*
72130524 ACTGA
129 CCT-A
* *
72130529 -AAGCACAGGAATGTCAGATCTGTTATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATC
1 TAAGCACAGGAATGTCAAATCTGATATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATC
* * *
72130593 TGTTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCC
66 TGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCC
72130658 TA
131 TA
* * * * * * * * * *
72130660 TAAGCACAGGGATG-C-CATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGA
1 TAAGCACAGGAATGTCAAAT-CTGATATCTTCGATCCG-TTCCCTATAAGCACAGGGATGCCAAA
* *
72130723 TCTGCTATCTTCGA-TCCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTT
64 TCTGCTATCTTCAACT-TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTT
72130787 CCCTA
128 CCCTA
* * * * *
72130792 TAAGCACAGGAATGCCAAATCTGATGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--AT
1 TAAGCACAGGAATGTCAAATCTGATATCTTCGATC-CGTTCCCTATAAGCACAGGGATGCCAAAT
*** *
72130854 GCTAAAATCTTCAACTTGTTCCCTATAAGTACAGGGATGCCA
65 -CTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCA
72130896 TGCTGAAATC
Statistics
Matches: 309, Mismatches: 47, Indels: 24
0.81 0.12 0.06
Matches are distributed among these distances:
130 4 0.01
131 49 0.16
132 234 0.76
133 18 0.06
134 4 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
TAAGCACAGGAATGTCAAATCTGATATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATC
TGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCC
TA
Found at i:72130703 original size:176 final size:176
Alignment explanation
Indices: 72130432--72130865 Score: 753
Period size: 176 Copynumber: 2.5 Consensus size: 176
72130422 TCTTCGATCC
* * * *
72130432 GTTCCTTATAAGCACAGGGATCCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGAAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
* *
72130497 GTCATGCTGAAATCTTCGATCTAGTTCACTGAAAGCACAGGAATGTCAGATCTGTTATCTTCGAT
66 GCCATGCTGAAATCTTCGATCTAGTTCACTGAAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
*
72130562 CCGTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTT
131 CCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
72130608 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
* *
72130673 GCCATGCTGAAATCTTTGATCT-GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
66 GCCATGCTGAAATCTTCGATCTAG-TTCACTGAAAGCACAGGAATGTCAGATCTGCTATCTTCGA
72130737 TCCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
130 TCCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
*
72130784 GTTCCCTATAAGCACAGGAATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
*
72130849 GCCATGCTAAAATCTTC
66 GCCATGCTGAAATCTTC
72130866 AACTTGTTCC
Statistics
Matches: 245, Mismatches: 12, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
175 1 0.00
176 244 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (176 bp):
GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
GCCATGCTGAAATCTTCGATCTAGTTCACTGAAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
CCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
Found at i:72131094 original size:68 final size:68
Alignment explanation
Indices: 72131010--72131205 Score: 288
Period size: 68 Copynumber: 2.9 Consensus size: 68
72131000 TCTTCCACTC
* * * * *
72131010 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCTCTCCAATGCCATTTCTGGAAGAAGAGGT-TT
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGATCCT
72131074 GCTG
66 -CTG
* * *
72131078 AAACTTCAAGGAGATCTGTTATGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAGATCCT
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGATCCT
72131143 CTG
66 CTG
*
72131146 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGGA-AAAAGA
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
72131206 AATTTGTAAT
Statistics
Matches: 115, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
67 6 0.05
68 108 0.94
69 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (68 bp):
AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGATCCT
CTG
Found at i:72131335 original size:43 final size:43
Alignment explanation
Indices: 72131277--72131610 Score: 256
Period size: 43 Copynumber: 7.7 Consensus size: 43
72131267 CTATTTCCCA
* *
72131277 ACTGCTTAAGGGGTTAAGATCTGTAAATTCAACCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCT
* *
72131320 ACTGGTTAGGGGGTTAAGATTTGTAAATTTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAA--TTCAGCCTGTTACCCT
* * * * *
72131365 ACTGCTTAGGGGTTTAAGGTTTGTAAATTCGGCTTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCT
* * * * *
72131408 ACTGCTTAGGGGGTTAAAGCCCATCAT-T--TTTTA-TCTATTTCCCT
1 ACTGCTTAGGGGGTT-AAG---ATC-TGTAAATTCAGCCTGTTACCCT
*
72131452 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAA--TTCAGCCTGTTACCCT
* * * *
72131497 ACTGCTTAGGGGTTTAAG-GCTTGTAAATTCGGCTTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATC-TGTAAATTCAGCCTGTTACCCT
* * * *
72131540 ACTGCTTA-GGGGTTAAAGCCCATCATCT---TTGA-TCTGTTTCCCT
1 ACTGCTTAGGGGGTT-AAG---ATC-TGTAAATTCAGCCTGTTACCCT
72131583 ACTGCTTAGGGGGTTAAGATCTGTAAAT
1 ACTGCTTAGGGGGTTAAGATCTGTAAAT
72131611 CTTCAGTCTA
Statistics
Matches: 228, Mismatches: 40, Indels: 47
0.72 0.13 0.15
Matches are distributed among these distances:
39 3 0.01
40 7 0.03
42 6 0.03
43 98 0.43
44 37 0.16
45 71 0.31
47 5 0.02
48 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.36
Consensus pattern (43 bp):
ACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCT
Found at i:72131403 original size:88 final size:88
Alignment explanation
Indices: 72131277--72131553 Score: 285
Period size: 88 Copynumber: 3.2 Consensus size: 88
72131267 CTATTTCCCA
* * *
72131277 ACTGCTTAAGGGG-TTAAGATCTGTAAATTCAACCTGTTACCCTACTGGTTAGGGGGTTAAGATT
1 ACTGCTT-AGGGGTTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGACT
72131341 TGTAAATTTTCAGCCTGTTACCCT
65 TGTAAATTTTCAGCCTGTTACCCT
* * * * *
72131365 ACTGCTTAGGGGTTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAA-AGCC
1 ACTGCTTAGGGGTTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGA-CT
** * * * * * *
72131429 CATCATTTTTTA-TCTATTTCCCT
65 TGTAAATTTTCAGCCTGTTACCCT
* * * *
72131452 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGGGGTTTAAGGC
1 ACTGCTTAGGGGTTTAAGATCTGTAAA--TTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGAC
* *
72131517 TTGTAAA--TTCGGCTTGTTACCCT
64 TTGTAAATTTTCAGCCTGTTACCCT
72131540 ACTGCTTAGGGGTT
1 ACTGCTTAGGGGTT
72131554 AAAGCCCATC
Statistics
Matches: 147, Mismatches: 36, Indels: 12
0.75 0.18 0.06
Matches are distributed among these distances:
87 40 0.27
88 75 0.51
89 32 0.22
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.36
Consensus pattern (88 bp):
ACTGCTTAGGGGTTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGACTT
GTAAATTTTCAGCCTGTTACCCT
Found at i:72131452 original size:132 final size:131
Alignment explanation
Indices: 72131316--72131616 Score: 521
Period size: 132 Copynumber: 2.3 Consensus size: 131
72131306 CAACCTGTTA
* * * *
72131316 CCCTACTGGTTAGGGGGTTAAGATTTGTAAATTTTCAGCCTGTTACCCTACTGCTTAGGGGTTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGGGGTTTA
* * *
72131381 AGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTTTATCTAT
66 AGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTA-GGGGTTAAAGCCCATCATCTTTGATCTAT
72131446 TT
130 TT
72131448 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGGGGTTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGGGGTTTA
*
72131513 AGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGTTAAAGCCCATCATCTTTGATCTGTT
66 AGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGTTAAAGCCCATCATCTTTGATCTATT
72131578 T
131 T
72131579 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
72131617 TCTATTCCAC
Statistics
Matches: 161, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
131 66 0.41
132 95 0.59
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (131 bp):
CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGGGGTTTA
AGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGTTAAAGCCCATCATCTTTGATCTATT
T
Found at i:72131537 original size:175 final size:174
Alignment explanation
Indices: 72131224--72131553 Score: 482
Period size: 175 Copynumber: 1.9 Consensus size: 174
72131214 ATTTCCAGCC
* *
72131224 TGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
1 TGTTACCCTACTACTTAGGGGGTTAAAGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
* * *
72131289 GTTAAGATCTGTAAATTCAACCTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATTTTCAG
66 GTTAAGATCTGTAAATTCAACCAGTTACCCTACTGCTTAGGGGGTTAAGACTTGTAAA-TTTCAG
72131354 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGTAAATTCGGCT
130 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGTAAATTCGGCT
* * ** * *
72131399 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTTTATCTATTTCCCTACTGCTTAGGGG
1 TGTTACCCTACTACTTAGGGGGTTAAAGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
* * * *
72131464 GTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAA-TTCG
66 GTTAAGATCTGTAAA--TTCAACCAGTTACCCTACTGCTTAGGGGGTTAAGACTTGTAAATTTCA
*
72131528 GCTTGTTACCCTACTGCTTAGGGGTT
129 GCCTGTTACCCTACTGCTTAGGGGTT
72131554 AAAGCCCATC
Statistics
Matches: 137, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
175 100 0.73
177 37 0.27
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (174 bp):
TGTTACCCTACTACTTAGGGGGTTAAAGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
GTTAAGATCTGTAAATTCAACCAGTTACCCTACTGCTTAGGGGGTTAAGACTTGTAAATTTCAGC
CTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGTAAATTCGGCT
Found at i:72131585 original size:175 final size:173
Alignment explanation
Indices: 72131223--72131599 Score: 452
Period size: 175 Copynumber: 2.2 Consensus size: 173
72131213 AATTTCCAGC
* * *
72131223 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGG
* * *
72131288 GGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATTTTCA
66 GGTTAAGATCTGTAAATTCAACCAGTTACCCTACTGCTTAGGGGGTTAAGACTTGTAAA-TTTCA
* *** *
72131353 GCCTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGTAAATTCGG
130 GCCTGTTACCCTACTGCTTAGGGGTTAAAGCCATGCAAATTCGG
* ** * *
72131397 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTTTATCTATTTCCCTACTGCTTAGG
1 C-TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAG
* * *
72131462 GGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAA-TT
65 GGGTTAAGATCTGTAAA--TTCAACCAGTTACCCTACTGCTTAGGGGGTTAAGACTTGTAAATTT
* * ** * *
72131526 CGGCTTGTTACCCTACTGCTTAGGGGTTAAAGCCCAT-CATCTTTGAT
128 CAGCCTGTTACCCTACTGCTTAGGGGTTAAAG-CCATGCAAATTCG-G
*
72131573 CTGTTTCCCTACTGCTTAGGGGGTTAA
1 CTGTTACCCTACTGCTTAGGGGGTTAA
72131600 GATCTGTAAA
Statistics
Matches: 172, Mismatches: 26, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
174 1 0.01
175 132 0.77
176 2 0.01
177 37 0.22
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (173 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGG
GGTTAAGATCTGTAAATTCAACCAGTTACCCTACTGCTTAGGGGGTTAAGACTTGTAAATTTCAG
CCTGTTACCCTACTGCTTAGGGGTTAAAGCCATGCAAATTCGG
Found at i:72131848 original size:134 final size:134
Alignment explanation
Indices: 72131598--72131971 Score: 649
Period size: 134 Copynumber: 2.8 Consensus size: 134
72131588 TTAGGGGGTT
* *
72131598 AAGATCTGTAAATCTTCAGTCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAAT
1 AAGATCTG-CAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAAT
* *
72131663 GTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGG
65 GTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGACCTGCTTCGCTGCCAAATACAGG
72131728 AAGGC
130 AAGGC
*
72131733 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGACTTCAATG
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
*
72131798 TACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGA
66 TACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGA
72131863 AGGC
131 AGGC
72131867 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
* *
72131932 TACTCCACTATAGTCACATGGAGGTAAAATCTGCCATCTT
66 TACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCATCTT
72131972 TGATCTTCAA
Statistics
Matches: 227, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
134 197 0.87
135 8 0.04
136 22 0.10
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.27
Consensus pattern (134 bp):
AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
TACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGA
AGGC
Found at i:72131992 original size:97 final size:95
Alignment explanation
Indices: 72131877--72132072 Score: 347
Period size: 97 Copynumber: 2.0 Consensus size: 95
72131867 AAGATCTGCA
72131877 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
* *
72131942 TAGTCACATGGAGGTAAAATCTGCCATCTTTG
66 TAGT--CAGGGAGGTAAAATCTGCCATCTTCG
*
72131974 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
72132039 TAGTCAGGGAGGTAAAATCTGCCATCTTCG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCG
72132069 ATCT
1 ATCT
72132073 GCTTCGCTGC
Statistics
Matches: 96, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
95 28 0.29
97 68 0.71
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
TAGTCAGGGAGGTAAAATCTGCCATCTTCG
Found at i:72132131 original size:134 final size:134
Alignment explanation
Indices: 72131974--72132385 Score: 743
Period size: 134 Copynumber: 3.1 Consensus size: 134
72131964 GCCATCTTTG
72131974 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
72132039 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
72132104 TGCA
131 TGCA
*
72132108 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCAATG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
72132173 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGAAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
72132238 TGCA
131 TGCA
*
72132242 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
72132307 TAGTCACAGGGAGGTAAAATCTGCCATCTTCGATTTGCTTCACTGCCAAATACAGGAAGGCAAGA
66 TAGT--CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGA
72132372 TCTGCA
129 TCTGCA
*
72132378 ATATTCAA
1 ATCTTCAA
72132386 CCTGCTCTGC
Statistics
Matches: 266, Mismatches: 10, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
134 197 0.74
136 69 0.26
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.26
Consensus pattern (134 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
TGCA
Found at i:72132146 original size:231 final size:229
Alignment explanation
Indices: 72131743--72132206 Score: 838
Period size: 231 Copynumber: 2.0 Consensus size: 229
72131733 AAGATCTGCA
72131743 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGACTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGACTTCAATGTACTCCACTG
72131808 TAGTCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
72131873 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
131 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
* * *
72131938 ACTATAGTCACATGGAGGTAAAATCTGCCATCTTTG
196 AATATAGT--CAGGGAGGTAAAATCTGCCATCTTCG
*
72131974 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGACTTCAATGTACTCCACTG
* *
72132039 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
72132104 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
131 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
* *
72132169 AATGTGGTCAGGGAGGTAAAATCTGCCATCTTCG
196 AATATAGTCAGGGAGGTAAAATCTGCCATCTTCG
72132203 ATCT
1 ATCT
72132207 GCTTCGCTGC
Statistics
Matches: 225, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
229 28 0.12
231 197 0.88
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (229 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGACTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
AATATAGTCAGGGAGGTAAAATCTGCCATCTTCG
Found at i:72132279 original size:365 final size:365
Alignment explanation
Indices: 72131609--72132336 Score: 1375
Period size: 365 Copynumber: 2.0 Consensus size: 365
72131599 AGATCTGTAA
*
72131609 ATCTTCAGTCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
72131674 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
72131739 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGACTTCAATGTACTCC
131 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGACTTCAATGTACTCC
* *
72131804 ACTGTAGTCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAA
196 AATGTAGTCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGAAAGGCAA
72131869 GATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTA
261 GATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTA
*
72131934 CTCCACTATAGTCACATGGAGGTAAAATCTGCCATCTTTG
326 CTCCACTATAGTCACAGGGAGGTAAAATCTGCCATCTTTG
72131974 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
72132039 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
*
72132104 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC
131 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGACTTCAATGTACTCC
* * *
72132169 AATGTGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGAAAGGCAA
196 AATGTAGTCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGAAAGGCAA
72132234 GATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTA
261 GATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTA
72132299 CTCCACTATAGTCACAGGGAGGTAAAATCTGCCATCTT
326 CTCCACTATAGTCACAGGGAGGTAAAATCTGCCATCTT
72132337 CGATTTGCTT
Statistics
Matches: 354, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
365 354 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.27
Consensus pattern (365 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGACTTCAATGTACTCC
AATGTAGTCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGAAAGGCAA
GATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTA
CTCCACTATAGTCACAGGGAGGTAAAATCTGCCATCTTTG
Found at i:72133067 original size:108 final size:108
Alignment explanation
Indices: 72132878--72133073 Score: 313
Period size: 108 Copynumber: 1.8 Consensus size: 108
72132868 GAAAAATGCT
72132878 TGAAAAAGATTATCAAAATGGACAAAATGAAATTTTGTTGAGAGCAAAGCTATAAACAAACAAAT
1 TGAAAAAGATTATCAAAATGGACAAAATGAAATTTTGTTGAGAGCAAAGCTATAAACAAACAAAT
72132943 CAATCAAGATAGCAAATTTTGCTGAGATACGAGATGTATAAGA
66 CAATCAAGATAGCAAATTTTGCTGAGATACGAGATGTATAAGA
* * * * **
72132986 TGAAAAAGATTATCACAATGGATAAGATGGAAA-TTTGTTGAGAGCAAAGCTCTAAATGAACAAA
1 TGAAAAAGATTATCAAAATGGACAAAAT-GAAATTTTGTTGAGAGCAAAGCTATAAACAAACAAA
*
72133050 TTAATCAAGATAGCAAATTTTGCT
65 TCAATCAAGATAGCAAATTTTGCT
72133074 AGAATACAAA
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
108 76 0.95
109 4 0.05
ACGTcount: A:0.46, C:0.10, G:0.18, T:0.26
Consensus pattern (108 bp):
TGAAAAAGATTATCAAAATGGACAAAATGAAATTTTGTTGAGAGCAAAGCTATAAACAAACAAAT
CAATCAAGATAGCAAATTTTGCTGAGATACGAGATGTATAAGA
Found at i:72133137 original size:45 final size:43
Alignment explanation
Indices: 72133039--72133139 Score: 112
Period size: 45 Copynumber: 2.3 Consensus size: 43
72133029 GCAAAGCTCT
* * *
72133039 AAATGAACAAATTAATCAAGATAGCAAATTTTGCTAGAATACA
1 AAATGAATAAATTAATCAAGATAGCAAATTTTGCAAAAATACA
* **
72133082 AAATGAGAATAAATTAATCAAGATGGCGTATTTTGTCAAAAATACAA
1 AAAT--GAATAAATTAATCAAGATAGCAAATTTTG-CAAAAATAC-A
72133129 AAATGAATAAA
1 AAATGAATAAA
72133140 ATGGAAATAG
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
43 4 0.08
45 32 0.67
46 7 0.15
47 5 0.10
ACGTcount: A:0.52, C:0.09, G:0.13, T:0.26
Consensus pattern (43 bp):
AAATGAATAAATTAATCAAGATAGCAAATTTTGCAAAAATACA
Found at i:72133422 original size:8 final size:8
Alignment explanation
Indices: 72133409--72133459 Score: 54
Period size: 8 Copynumber: 6.6 Consensus size: 8
72133399 TGGCCTCTCC
72133409 TTTTCTTT
1 TTTTCTTT
72133417 TTTTC---
1 TTTTCTTT
72133422 TTTTCTTT
1 TTTTCTTT
*
72133430 TTTTGTTT
1 TTTTCTTT
*
72133438 TTTTGTTT
1 TTTTCTTT
72133446 TTTTCGTTT
1 TTTTC-TTT
72133455 TTTTC
1 TTTTC
72133460 AAGTGAAGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
5 5 0.14
8 24 0.65
9 8 0.22
ACGTcount: A:0.00, C:0.10, G:0.06, T:0.84
Consensus pattern (8 bp):
TTTTCTTT
Found at i:72133426 original size:13 final size:13
Alignment explanation
Indices: 72133408--72133459 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
72133398 TTGGCCTCTC
72133408 CTTTTCTTTTTTT
1 CTTTTCTTTTTTT
72133421 CTTTTCTTTTTTT
1 CTTTTCTTTTTTT
* *
72133434 GTTTT-TTTGTTT
1 CTTTTCTTTTTTT
72133446 -TTTTCGTTTTTTT
1 CTTTTC-TTTTTTT
72133459 C
1 C
72133460 AAGTGAAGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
11 4 0.12
12 6 0.18
13 23 0.70
ACGTcount: A:0.00, C:0.12, G:0.06, T:0.83
Consensus pattern (13 bp):
CTTTTCTTTTTTT
Found at i:72133459 original size:9 final size:9
Alignment explanation
Indices: 72133422--72133459 Score: 55
Period size: 8 Copynumber: 4.6 Consensus size: 9
72133412 TCTTTTTTTC
72133422 TTTTC-TTT
1 TTTTCGTTT
72133430 TTTT-GTTT
1 TTTTCGTTT
72133438 TTTT-GTTT
1 TTTTCGTTT
72133446 TTTTCGTTT
1 TTTTCGTTT
72133455 TTTTC
1 TTTTC
72133460 AAGTGAAGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 19 0.68
9 9 0.32
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.84
Consensus pattern (9 bp):
TTTTCGTTT
Found at i:72133910 original size:11 final size:11
Alignment explanation
Indices: 72133896--72133991 Score: 56
Period size: 11 Copynumber: 8.5 Consensus size: 11
72133886 TCTTTTATTA
72133896 TTTTATTTTTG-
1 TTTT-TTTTTGC
72133907 TTTTTTTTTGC
1 TTTTTTTTTGC
72133918 TTTTGTTTTCT-C
1 TTTT-TTTT-TGC
* *
72133930 GTTTTTTTTAC
1 TTTTTTTTTGC
*
72133941 TTTTTTGCTTT-T
1 TTTTTT--TTTGC
72133953 TTTGCTTTTTTGC
1 TTT--TTTTTTGC
* *
72133966 TCTTTTTTTGT
1 TTTTTTTTTGC
72133977 TTTTTTTTTG-
1 TTTTTTTTTGC
72133987 TTTTT
1 TTTTT
72133992 GCCTCCACTG
Statistics
Matches: 69, Mismatches: 7, Indels: 19
0.73 0.07 0.20
Matches are distributed among these distances:
10 12 0.17
11 34 0.49
12 14 0.20
13 6 0.09
14 3 0.04
ACGTcount: A:0.02, C:0.08, G:0.09, T:0.80
Consensus pattern (11 bp):
TTTTTTTTTGC
Found at i:72133912 original size:8 final size:8
Alignment explanation
Indices: 72133901--72133991 Score: 55
Period size: 8 Copynumber: 11.4 Consensus size: 8
72133891 TATTATTTTA
72133901 TTTTTGTT
1 TTTTTGTT
72133909 TTTTT-TT
1 TTTTTGTT
*
72133916 GCTTTTGTT
1 -TTTTTGTT
* *
72133925 TTCTCGTT
1 TTTTTGTT
72133933 TTTTT-TACT
1 TTTTTGT--T
72133942 TTTTTGCTT
1 TTTTTG-TT
*
72133951 TTTTTGCT
1 TTTTTGTT
*
72133959 TTTTTGCT
1 TTTTTGTT
*
72133967 CTTTT-TT
1 TTTTTGTT
*
72133974 TGTTT-TT
1 TTTTTGTT
72133981 TTTTTGTT
1 TTTTTGTT
72133989 TTT
1 TTT
72133992 GCCTCCACTG
Statistics
Matches: 64, Mismatches: 12, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
7 13 0.20
8 35 0.55
9 15 0.23
11 1 0.02
ACGTcount: A:0.01, C:0.09, G:0.10, T:0.80
Consensus pattern (8 bp):
TTTTTGTT
Found at i:72133952 original size:17 final size:17
Alignment explanation
Indices: 72133932--72133973 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
72133922 GTTTTCTCGT
72133932 TTTTTTTACTTTTTTGC
1 TTTTTTTACTTTTTTGC
*
72133949 TTTTTTTGCTTTTTTGC
1 TTTTTTTACTTTTTTGC
72133966 TCTTTTTT
1 T-TTTTTT
72133974 TGTTTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 17 0.74
18 6 0.26
ACGTcount: A:0.02, C:0.12, G:0.07, T:0.79
Consensus pattern (17 bp):
TTTTTTTACTTTTTTGC
Found at i:72135462 original size:62 final size:62
Alignment explanation
Indices: 72135280--72135462 Score: 312
Period size: 62 Copynumber: 3.0 Consensus size: 62
72135270 CTCGACGTAC
* * * * *
72135280 TTTTGGATTTTAGGAAATTTACTGTATGCAATGAAACGTAATGTTGATGCATGAATGCGTAT
1 TTTTGGATTTTAGGAAATTTATTGCATGCGATGAAATGTAATGTTGATGCATGAATGCATAT
72135342 TTTTGGATTTTAGGAAATTTATTGCATGCGATGAAATGTAATGTTGATGCATGAATGCATAT
1 TTTTGGATTTTAGGAAATTTATTGCATGCGATGAAATGTAATGTTGATGCATGAATGCATAT
*
72135404 TTTTGGATTTTAGTAAATTTATTGCATGCGATGAAATGTAATGTTGATGCATGAATGCA
1 TTTTGGATTTTAGGAAATTTATTGCATGCGATGAAATGTAATGTTGATGCATGAATGCA
72135463 AAAAGAGATG
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 115 1.00
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (62 bp):
TTTTGGATTTTAGGAAATTTATTGCATGCGATGAAATGTAATGTTGATGCATGAATGCATAT
Found at i:72137709 original size:3 final size:3
Alignment explanation
Indices: 72137696--72137778 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
72137686 GAGGGCATAT
72137696 ATA AT- ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA ATA
* *
72137740 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
72137779 ATAAAGCTCT
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 9 0.14
3 45 0.69
4 9 0.14
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:72137718 original size:12 final size:12
Alignment explanation
Indices: 72137694--72137775 Score: 69
Period size: 12 Copynumber: 6.5 Consensus size: 12
72137684 GAGAGGGCAT
72137694 ATATAATATAATA
1 ATATAA-ATAATA
72137707 ATATAAATAATA
1 ATATAAATAATA
72137719 ATATATACATGAGA-A
1 ATATA-A-AT-A-ATA
72137734 ATA-ATAATAATA
1 ATATA-AATAATA
72137746 ATATAAATAATA
1 ATATAAATAATA
* *
72137758 GTAAAAATAATA
1 ATATAAATAATA
*
72137770 AAATAA
1 ATATAA
72137776 TAAATAAAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
11 1 0.02
12 36 0.62
13 10 0.17
14 5 0.09
15 5 0.09
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:72137737 original size:21 final size:18
Alignment explanation
Indices: 72137696--72137778 Score: 73
Period size: 18 Copynumber: 4.6 Consensus size: 18
72137686 GAGGGCATAT
*
72137696 ATAAT-ATAATAATATAA
1 ATAATAATAATAATAGAA
72137713 ATAATAATATATACATGAGAA
1 ATAATAATA-ATA-AT-AGAA
*
72137734 ATAATAATAATAATATAA
1 ATAATAATAATAATAGAA
* *
72137752 ATAATAGTAAAAATA-ATA
1 ATAATAATAATAATAGA-A
72137770 A-AATAATAA
1 ATAATAATAA
72137779 ATAAAGCTCT
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
17 13 0.23
18 21 0.38
19 5 0.09
20 5 0.09
21 12 0.21
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (18 bp):
ATAATAATAATAATAGAA
Found at i:72137766 original size:27 final size:27
Alignment explanation
Indices: 72137694--72137782 Score: 80
Period size: 27 Copynumber: 3.4 Consensus size: 27
72137684 GAGAGGGCAT
* *
72137694 ATATAATATAATAATATAAATAATAAT-
1 ATATAA-ATAATAGTAAAAATAATAATA
* *
72137721 ATATACAT--GAG-AAATAATAATAATA
1 ATATAAATAATAGTAAA-AATAATAATA
72137746 ATATAAATAATAGTAAAAATAATAA-A
1 ATATAAATAATAGTAAAAATAATAATA
72137772 ATAATAAATAA
1 AT-ATAAATAA
72137783 AGCTCTCAAC
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
23 2 0.04
24 10 0.20
25 7 0.14
26 5 0.10
27 23 0.46
28 3 0.06
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATATAAATAATAGTAAAAATAATAATA
Found at i:72138037 original size:20 final size:23
Alignment explanation
Indices: 72138012--72138058 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
72138002 CAAAAAAACA
72138012 AAAACAAA-AA-AA-CCTCCTCC
1 AAAACAAAGAACAATCCTCCTCC
*
72138032 AAAACAAAGAACAATCCTTCTCC
1 AAAACAAAGAACAATCCTCCTCC
72138055 AAAA
1 AAAA
72138059 AACCAAAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 8 0.35
21 2 0.09
22 2 0.09
23 11 0.48
ACGTcount: A:0.55, C:0.30, G:0.02, T:0.13
Consensus pattern (23 bp):
AAAACAAAGAACAATCCTCCTCC
Found at i:72138220 original size:4 final size:4
Alignment explanation
Indices: 72138211--72138237 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
72138201 GGCCAAGGTT
72138211 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
72138238 TTTGTGTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:72157968 original size:23 final size:23
Alignment explanation
Indices: 72157941--72157984 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
72157931 CATAAGTTGA
72157941 ATTTATAATTTGATAAGGGGCGT
1 ATTTATAATTTGATAAGGGGCGT
72157964 ATTTATAATTTGATAAGGGGC
1 ATTTATAATTTGATAAGGGGC
72157985 CAAACTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.39
Consensus pattern (23 bp):
ATTTATAATTTGATAAGGGGCGT
Found at i:72157993 original size:23 final size:23
Alignment explanation
Indices: 72157944--72157994 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
72157934 AAGTTGAATT
** **
72157944 TATAATTTGATAAGGGGCGTATT
1 TATAATTTGATAAGGGGCCAAAC
72157967 TATAATTTGATAAGGGGCCAAAC
1 TATAATTTGATAAGGGGCCAAAC
72157990 TATAA
1 TATAA
72157995 ATGCCCAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.37, C:0.08, G:0.22, T:0.33
Consensus pattern (23 bp):
TATAATTTGATAAGGGGCCAAAC
Found at i:72161645 original size:40 final size:39
Alignment explanation
Indices: 72161601--72161694 Score: 95
Period size: 40 Copynumber: 2.4 Consensus size: 39
72161591 GGTACCTCTT
* *
72161601 GGTGTGTAGGGTTGGATGGGTTGATTTTATCCCCATAC-TA
1 GGTGTGTAGGGTTGGATGGGTCGATCTTAT-CCCA-ACATA
* *
72161641 GGTGTGTAAGGCTAGG-TGGGTCGATCTTATCCCAACATA
1 GGTGTGT-AGGGTTGGATGGGTCGATCTTATCCCAACATA
*
72161680 -GTGTGTTGGGTTGGA
1 GGTGTGTAGGGTTGGA
72161695 CGGAGATGGT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
37 5 0.11
38 8 0.18
39 6 0.14
40 19 0.43
41 6 0.14
ACGTcount: A:0.18, C:0.13, G:0.35, T:0.34
Consensus pattern (39 bp):
GGTGTGTAGGGTTGGATGGGTCGATCTTATCCCAACATA
Found at i:72163504 original size:30 final size:29
Alignment explanation
Indices: 72163468--72163525 Score: 107
Period size: 30 Copynumber: 2.0 Consensus size: 29
72163458 AACGAAAGTT
72163468 TTGGCACTAAGTGTGCGATTTAAACTAGCC
1 TTGGCACTAAGTGTGCGATTT-AACTAGCC
72163498 TTGGCACTAAGTGTGCGATTTAACTAGC
1 TTGGCACTAAGTGTGCGATTTAACTAGC
72163526 TCCGACTACT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 7 0.25
30 21 0.75
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (29 bp):
TTGGCACTAAGTGTGCGATTTAACTAGCC
Found at i:72172959 original size:40 final size:39
Alignment explanation
Indices: 72172912--72173058 Score: 179
Period size: 40 Copynumber: 3.6 Consensus size: 39
72172902 TTGATGACAA
72172912 TTCGGCTATGTATGGCACTTAGTGTACGATTCAAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTACGATT-AAGATAGC
* * *
72172952 TTTGGCTATGTGTGGCACTTAGTG-AGCGATTTGAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTA-CGA-TTAAGATAGC
* *
72172992 TTCGGCTATGTATGGCACTTAGTGTGCGAGATTAAAATAGC
1 TTCGGCTATGTATGGCACTTAGTGTAC--GATTAAGATAGC
*
72173033 TTCGGCTATGAATTGGCACTTAGTGT
1 TTCGGCTATGTA-TGGCACTTAGTGT
72173059 GTGAGAATTC
Statistics
Matches: 92, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
39 1 0.01
40 55 0.60
41 21 0.23
42 15 0.16
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (39 bp):
TTCGGCTATGTATGGCACTTAGTGTACGATTAAGATAGC
Found at i:72175712 original size:12 final size:12
Alignment explanation
Indices: 72175695--72175727 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
72175685 TATATAAATG
*
72175695 AATTTAATTATC
1 AATTTAATCATC
72175707 AATTTAATCATC
1 AATTTAATCATC
72175719 AATTTAATC
1 AATTTAATC
72175728 CATTTCATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (12 bp):
AATTTAATCATC
Found at i:72181640 original size:22 final size:22
Alignment explanation
Indices: 72181615--72181656 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
72181605 GTTAGCAATT
72181615 AATAATTTTTAAAATATTTAAA
1 AATAATTTTTAAAATATTTAAA
* *
72181637 AATATTTTTTAAAATTTTTA
1 AATAATTTTTAAAATATTTA
72181657 TACTTTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
AATAATTTTTAAAATATTTAAA
Found at i:72181654 original size:9 final size:9
Alignment explanation
Indices: 72181613--72181703 Score: 56
Period size: 9 Copynumber: 9.3 Consensus size: 9
72181603 ACGTTAGCAA
72181613 TTAATAATTT
1 TTAA-AATTT
72181623 TTAAAATATT
1 TTAAAAT-TT
*
72181633 TAAAAATATTTT
1 T-TAAA-A-TTT
72181645 TTAAAATTT
1 TTAAAATTT
* *
72181654 TTATACTTT
1 TTAAAATTT
*
72181663 TTAAAGTTT
1 TTAAAATTT
*
72181672 TTAATATTTT
1 TTAA-AATTT
*
72181682 TTATATATTT
1 TTA-AAATTT
*
72181692 TTAAATTTT
1 TTAAAATTT
72181701 TTA
1 TTA
72181704 TGTTTAAAAA
Statistics
Matches: 64, Mismatches: 11, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
9 31 0.48
10 21 0.33
11 7 0.11
12 4 0.06
13 1 0.02
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (9 bp):
TTAAAATTT
Found at i:72181692 original size:19 final size:19
Alignment explanation
Indices: 72181637--72181704 Score: 61
Period size: 19 Copynumber: 3.6 Consensus size: 19
72181627 AATATTTAAA
*
72181637 AATATTTTTTA-AAATTTT
1 AATATTTTTTATATATTTT
* * *
72181655 TATACTTTTTAAAGT-TTTT
1 AATATTTTTTATA-TATTTT
72181674 AATATTTTTTATATATTTTT
1 AATATTTTTTATATA-TTTT
72181694 AA-ATTTTTTAT
1 AATATTTTTTAT
72181705 GTTTAAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
18 10 0.25
19 24 0.60
20 6 0.15
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (19 bp):
AATATTTTTTATATATTTT
Found at i:72181806 original size:12 final size:13
Alignment explanation
Indices: 72181779--72181806 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
72181769 AGATGTTAAC
72181779 TTTTTCGATAATT
1 TTTTTCGATAATT
72181792 TTTTTCGATAATT
1 TTTTTCGATAATT
72181805 TT
1 TT
72181807 CAGAGTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.64
Consensus pattern (13 bp):
TTTTTCGATAATT
Found at i:72186483 original size:46 final size:46
Alignment explanation
Indices: 72186433--72186608 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
72186423 TGGTTGAGCA
72186433 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72186479 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
72186524 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * **
72186572 CCCGAGCTCGTTGAGTTGAGTCCGAGTTGGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72186609 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72186589 original size:93 final size:93
Alignment explanation
Indices: 72186430--72186599 Score: 313
Period size: 93 Copynumber: 1.8 Consensus size: 93
72186420 GGATGGTTGA
* *
72186430 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72186495 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
72186523 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72186588 TGAGTCCGAGTT
66 TGAGTCCGAGTT
72186600 GGCTTATGGG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72203044 original size:19 final size:19
Alignment explanation
Indices: 72203020--72203057 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
72203010 ATCCAAAAGA
72203020 ATGAATCGAATATCCCAAT
1 ATGAATCGAATATCCCAAT
72203039 ATGAATCGAATATCCCAAT
1 ATGAATCGAATATCCCAAT
72203058 CCACACCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (19 bp):
ATGAATCGAATATCCCAAT
Found at i:72207932 original size:27 final size:27
Alignment explanation
Indices: 72207901--72207958 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
72207891 ATAGGTAGCG
* * *
72207901 CCTATCTGGTAGGTGCCACTAGTAACT
1 CCTATCTGATACGCGCCACTAGTAACT
* *
72207928 CCTATCTGATACGCGCCACTGGTGACT
1 CCTATCTGATACGCGCCACTAGTAACT
72207955 CCTA
1 CCTA
72207959 CCTAATAGGC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.28
Consensus pattern (27 bp):
CCTATCTGATACGCGCCACTAGTAACT
Found at i:72211233 original size:75 final size:76
Alignment explanation
Indices: 72211129--72211285 Score: 201
Period size: 78 Copynumber: 2.1 Consensus size: 76
72211119 TTACGTAAAT
* *
72211129 AATACAAAGTTTATTATCTAAATTAC-AAAAAACTCC-TAAAATTAATAACTGAAATAACAAAAA
1 AATACAAAGTTGACTATCTAAATTACAAAAAAAC-CCATAAAATTAATAACTGAAATAACAAAAA
72211192 AGTCATTACATA
65 AGTCATTACATA
* * * **
72211204 AATACAAAGTTGACTATTTAAATTGCAAAAAAAAACCCATAAAATTAATAACTTAAATGGCAAAA
1 AATACAAAGTTGACTATCTAAATT--ACAAAAAAACCCATAAAATTAATAACTGAAATAACAAAA
*
72211269 AAGTCATTATATA
64 AAGTCATTACATA
72211282 AATA
1 AATA
72211286 TGAAGTTATT
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
75 21 0.30
77 3 0.04
78 46 0.66
ACGTcount: A:0.55, C:0.12, G:0.06, T:0.27
Consensus pattern (76 bp):
AATACAAAGTTGACTATCTAAATTACAAAAAAACCCATAAAATTAATAACTGAAATAACAAAAAA
GTCATTACATA
Found at i:72213593 original size:17 final size:16
Alignment explanation
Indices: 72213546--72213597 Score: 88
Period size: 16 Copynumber: 3.2 Consensus size: 16
72213536 AAATAAAAAT
72213546 AAAA-TTACATTATAA
1 AAAACTTACATTATAA
72213561 AAAACTTACATTATAA
1 AAAACTTACATTATAA
72213577 AAAACTTACATTAATAA
1 AAAACTTACATT-ATAA
72213594 AAAA
1 AAAA
72213598 TCACAAAACA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.11
16 23 0.66
17 8 0.23
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAACTTACATTATAA
Found at i:72213707 original size:103 final size:102
Alignment explanation
Indices: 72213586--72213933 Score: 355
Period size: 103 Copynumber: 3.3 Consensus size: 102
72213576 AAAAACTTAC
* *
72213586 ATTAATAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAATCATAAATTA
1 ATTACTAAAAAATCACAAAACACAAAACTAAACACTAACAATTTATATAACCTAATCATAAATTA
* *
72213651 CTAACAAAAAAACTATAAAATTATTTTAAAAAGATTAA
66 CTAA-AAAATAACTATAAAATTTTTTTAAAAAGATTAA
* * * *
72213689 ATTACTAAAAAATCACAAAACCCTAAACTAAACACACTAAC-A-GTCTATAACCTAATCATAAAT
1 ATTACTAAAAAATCACAAAACACAAAACT-AA-ACACTAACAATTTATATAACCTAATCATAAAT
* *
72213752 TACTAATAAAATAACTATAACATTTTTTTAAAAAGAATTTAC
64 TACTAA-AAAATAACTATAAAATTTTTTTAAAAAG-A-TTAA
*
72213794 ATTACTAATAAGTCACAAAAT-ACAAAACACAAAACACAAAACACTAACAATTTATA-AA-CTAA
1 ATTAC---T-A---A-AAAATCACAAAACAC-AAA-ACTAAACACTAACAATTTATATAACCTAA
* ** *
72213856 TCATAAATTACTAATAAATAACTATAAAAATATTTTTTAAAATATTTTAT
56 TCATAAATTACTAAAAAATAACTAT-AAAAT-TTTTTTAAAA-AGATTAA
72213906 ATTACTAAAAAATCACAAAACACAAAAC
1 ATTACTAAAAAATCACAAAACACAAAAC
72213934 ACTAACATAA
Statistics
Matches: 206, Mismatches: 19, Indels: 40
0.78 0.07 0.15
Matches are distributed among these distances:
103 79 0.38
104 12 0.06
105 26 0.13
108 2 0.01
109 2 0.01
111 10 0.05
112 47 0.23
113 22 0.11
114 6 0.03
ACGTcount: A:0.56, C:0.16, G:0.01, T:0.28
Consensus pattern (102 bp):
ATTACTAAAAAATCACAAAACACAAAACTAAACACTAACAATTTATATAACCTAATCATAAATTA
CTAAAAAATAACTATAAAATTTTTTTAAAAAGATTAA
Found at i:72213820 original size:7 final size:7
Alignment explanation
Indices: 72213807--72213837 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
72213797 ACTAATAAGT
72213807 CACAAAA
1 CACAAAA
*
72213814 TACAAAA
1 CACAAAA
72213821 CACAAAA
1 CACAAAA
72213828 CACAAAA
1 CACAAAA
72213835 CAC
1 CAC
72213838 TAACAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.68, C:0.29, G:0.00, T:0.03
Consensus pattern (7 bp):
CACAAAA
Found at i:72213838 original size:112 final size:112
Alignment explanation
Indices: 72213722--72213935 Score: 306
Period size: 112 Copynumber: 1.9 Consensus size: 112
72213712 TAAACTAAAC
* * *
72213722 ACACTAACAGTCTATAACCTAATCATAAATTACTAATAAAATAACTAT-AACAT-TTTTTTAAAA
1 ACACTAACAATCTATAAACTAATCATAAATTACTAAT-AAATAACTATAAAAATATTTTTT-AAA
* * *
72213785 AGAATTTACATTACTAATAAGTCACAAAATACAAAACACAAAACACAAA
64 AGAATTTACATTACTAAAAAATCACAAAACACAAAACACAAAACACAAA
* *
72213834 ACACTAACAATTTATAAACTAATCATAAATTACTAATAAATAACTATAAAAATATTTTTTAAAAT
1 ACACTAACAATCTATAAACTAATCATAAATTACTAATAAATAACTATAAAAATATTTTTTAAAAG
* *
72213899 ATTTTATATTACTAAAAAATCACAAAACACAAAACAC
66 AATTTACATTACTAAAAAATCACAAAACACAAAACAC
72213936 TAACATAAAT
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
111 10 0.11
112 74 0.82
113 6 0.07
ACGTcount: A:0.54, C:0.15, G:0.01, T:0.29
Consensus pattern (112 bp):
ACACTAACAATCTATAAACTAATCATAAATTACTAATAAATAACTATAAAAATATTTTTTAAAAG
AATTTACATTACTAAAAAATCACAAAACACAAAACACAAAACACAAA
Found at i:72213957 original size:71 final size:72
Alignment explanation
Indices: 72213869--72214007 Score: 183
Period size: 72 Copynumber: 1.9 Consensus size: 72
72213859 TAAATTACTA
* *** * * *
72213869 ATAAATAACTATAAAAATATTTTTTAAAAT-ATTTTATATTACTAAAAAATCACAAAACACAAAA
1 ATAAATAACTATAAAAATAATTAACAAAATAATTTTACATTAATAAAAAATCACAAAAAACAAAA
72213933 CACTAAC
66 CACTAAC
*
72213940 ATAAATTACTA-ACAAAATAATTAACAAAATAATTTTACATTAATAAAAAATCACAAAAAACAAA
1 ATAAATAACTATA-AAAATAATTAACAAAATAATTTTACATTAATAAAAAATCACAAAAAACAAA
72214004 ACAC
65 ACAC
72214008 AAAACACAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
70 1 0.02
71 23 0.40
72 34 0.59
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27
Consensus pattern (72 bp):
ATAAATAACTATAAAAATAATTAACAAAATAATTTTACATTAATAAAAAATCACAAAAAACAAAA
CACTAAC
Found at i:72213964 original size:12 final size:12
Alignment explanation
Indices: 72213949--72213973 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72213939 CATAAATTAC
72213949 TAACAAAATAAT
1 TAACAAAATAAT
72213961 TAACAAAATAAT
1 TAACAAAATAAT
72213973 T
1 T
72213974 TTACATTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (12 bp):
TAACAAAATAAT
Found at i:72214004 original size:7 final size:7
Alignment explanation
Indices: 72213986--72214021 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
72213976 ACATTAATAA
72213986 AAAATCAC
1 AAAA-CAC
*
72213994 AAAAAAC
1 AAAACAC
72214001 AAAACAC
1 AAAACAC
72214008 AAAACAC
1 AAAACAC
72214015 AAAACAC
1 AAAACAC
72214022 TAACAATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 22 0.85
8 4 0.15
ACGTcount: A:0.72, C:0.25, G:0.00, T:0.03
Consensus pattern (7 bp):
AAAACAC
Found at i:72214868 original size:21 final size:21
Alignment explanation
Indices: 72214838--72214878 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
72214828 TAACAGAATT
72214838 GCTGACGTGGCAAGTTAACTA
1 GCTGACGTGGCAAGTTAACTA
*
72214859 GCTGATGTGGCAAGTTAACT
1 GCTGACGTGGCAAGTTAACT
72214879 TGTCACGTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (21 bp):
GCTGACGTGGCAAGTTAACTA
Found at i:72216270 original size:3 final size:3
Alignment explanation
Indices: 72216231--72216323 Score: 82
Period size: 3 Copynumber: 31.7 Consensus size: 3
72216221 TTCCATTTTC
* * * * *
72216231 TCT TAT TCT TTT TCT CCT TCT CCT TC- TCT TTT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* * * * *
72216278 TCT TTT TCT TTT TCT TCT TCT TCT TTT TC- TCC TCT TCT TCC TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
72216324 CTCCTCCTCC
Statistics
Matches: 69, Mismatches: 19, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
2 4 0.06
3 65 0.94
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:72218198 original size:6 final size:6
Alignment explanation
Indices: 72218187--72218215 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
72218177 AAATGTTAAC
72218187 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
72218216 ATTAACCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:72226768 original size:27 final size:27
Alignment explanation
Indices: 72226715--72226768 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
72226705 TCGATTGGAT
* *
72226715 ATATTTAAGTATGGTATATATTAATAA
1 ATATTTAACTATGGTATATAGTAATAA
*
72226742 ATATTTAACTATTG-ATATAGTAGATAA
1 ATATTTAACTATGGTATATAGTA-ATAA
72226769 TTATGAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (27 bp):
ATATTTAACTATGGTATATAGTAATAA
Done.