Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 218 of 344
Found at i:72229768 original size:13 final size:13
Alignment explanation
Indices: 72229750--72229777 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
72229740 TGGAAAAAAA
72229750 TTTTTGAGAAGTT
1 TTTTTGAGAAGTT
72229763 TTTTTGAGAAGTT
1 TTTTTGAGAAGTT
72229776 TT
1 TT
72229778 GTTTAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.57
Consensus pattern (13 bp):
TTTTTGAGAAGTT
Found at i:72230409 original size:3 final size:3
Alignment explanation
Indices: 72230401--72230445 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
72230391 TTTGATTCAC
72230401 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
72230446 TTTCTCCACC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:72238018 original size:27 final size:27
Alignment explanation
Indices: 72237985--72238191 Score: 306
Period size: 27 Copynumber: 7.6 Consensus size: 27
72237975 TAAATTGTGC
*
72237985 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
72238012 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
72238040 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
72238067 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
72238095 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72238122 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * **
72238150 AGCACTAAGTGTGCGAGTTGATTATAA
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72238177 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72238192 GACTTAATAT
Statistics
Matches: 167, Mismatches: 10, Indels: 6
0.91 0.05 0.03
Matches are distributed among these distances:
27 90 0.54
28 77 0.46
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72238049 original size:55 final size:55
Alignment explanation
Indices: 72237985--72238191 Score: 351
Period size: 55 Copynumber: 3.8 Consensus size: 55
72237975 TAAATTGTGC
72237985 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
72238040 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* *
72238095 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * ** *
72238150 AGCACTAAGTGTGCGAGTTGATTATAAAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
72238192 GACTTAATAT
Statistics
Matches: 146, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 146 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:72245236 original size:11 final size:10
Alignment explanation
Indices: 72245192--72245267 Score: 50
Period size: 11 Copynumber: 7.4 Consensus size: 10
72245182 CAAATATCTT
*
72245192 AAAAATTATTT
1 AAAAATTA-TA
72245203 AAAAATT-TA
1 AAAAATTATA
72245212 TAAAAA-TAT-
1 -AAAAATTATA
*
72245221 GAAAATTAGTA
1 AAAAATTA-TA
*
72245232 AAAAAATATA
1 AAAAATTATA
*
72245242 AATAATTATTA
1 AAAAATTA-TA
72245253 AAAAATTACTA
1 AAAAATTA-TA
72245264 AAAA
1 AAAA
72245268 TACATGTTTA
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
8 4 0.08
9 4 0.08
10 15 0.29
11 28 0.55
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (10 bp):
AAAAATTATA
Found at i:72245258 original size:20 final size:20
Alignment explanation
Indices: 72245213--72245268 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 20
72245203 AAAAATTTAT
*
72245213 AAAAATATGAAAATTAGTAA
1 AAAAATATAAAAATTAGTAA
*
72245233 AAAAATATAAATAATTATTAA
1 AAAAATATAAA-AATTAGTAA
*
72245254 AAAATTACTAAAAAT
1 AAAAATA-TAAAAAT
72245269 ACATGTTTAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 10 0.32
21 17 0.55
22 4 0.13
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.29
Consensus pattern (20 bp):
AAAAATATAAAAATTAGTAA
Found at i:72245383 original size:21 final size:21
Alignment explanation
Indices: 72245333--72245374 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
72245323 GTTTTTGAAT
*
72245333 ATTAT-AAAT-ATTATTTAAA
1 ATTATAAAATAATTATTAAAA
72245352 ATTATAAAATAATTATTAAAA
1 ATTATAAAATAATTATTAAAA
72245373 AT
1 AT
72245375 CTAATAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 4 0.20
21 11 0.55
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
ATTATAAAATAATTATTAAAA
Found at i:72247996 original size:128 final size:128
Alignment explanation
Indices: 72247768--72248023 Score: 503
Period size: 128 Copynumber: 2.0 Consensus size: 128
72247758 GTAGTAAATG
72247768 CATTTGTATCAGTAAACTTTTGGTTTACTTTAACATGCATTTCAATTGTACTAATAATGTCAATA
1 CATTTGTATCAGTAAACTTTTGGTTTACTTTAACATGCATTTCAATTGTACTAATAATGTCAATA
72247833 TAAATTGTGACAAATTGATAATCTTACTGTCATTCCTTTTACTTTGTATCCACATATAAGTAT
66 TAAATTGTGACAAATTGATAATCTTACTGTCATTCCTTTTACTTTGTATCCACATATAAGTAT
*
72247896 CATTTGTATCAGTAAACTTTTGGTTTACTTTAACATGCATTTCAATTGTACTAATAATGTCAATT
1 CATTTGTATCAGTAAACTTTTGGTTTACTTTAACATGCATTTCAATTGTACTAATAATGTCAATA
72247961 TAAATTGTGACAAATTGATAATCTTACTGTCATTCCTTTTACTTTGTATCCACATATAAGTAT
66 TAAATTGTGACAAATTGATAATCTTACTGTCATTCCTTTTACTTTGTATCCACATATAAGTAT
72248024 TATTGTGACA
Statistics
Matches: 127, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
128 127 1.00
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.43
Consensus pattern (128 bp):
CATTTGTATCAGTAAACTTTTGGTTTACTTTAACATGCATTTCAATTGTACTAATAATGTCAATA
TAAATTGTGACAAATTGATAATCTTACTGTCATTCCTTTTACTTTGTATCCACATATAAGTAT
Found at i:72250178 original size:25 final size:26
Alignment explanation
Indices: 72250137--72250191 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
72250127 GTGACAGTAC
*
72250137 TTTTAAATTATACTTTTCAAT-ATTT
1 TTTTAAATTATAATTTTCAATAATTT
*
72250162 TTTTAAATT-TAAATTTTTAATAATTT
1 TTTTAAATTAT-AATTTTCAATAATTT
72250188 TTTT
1 TTTT
72250192 TATATATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 1 0.04
25 17 0.65
26 8 0.31
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.64
Consensus pattern (26 bp):
TTTTAAATTATAATTTTCAATAATTT
Found at i:72254394 original size:17 final size:17
Alignment explanation
Indices: 72254356--72254396 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
72254346 ATATATATTC
72254356 TAAAAA-AAATAAAAGT
1 TAAAAAGAAATAAAAGT
72254372 TCAAAAAGAATATAAAAG-
1 T-AAAAAGAA-ATAAAAGT
72254390 TAAAAAG
1 TAAAAAG
72254397 TAGTTAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 1 0.05
17 11 0.50
18 3 0.14
19 7 0.32
ACGTcount: A:0.71, C:0.02, G:0.10, T:0.17
Consensus pattern (17 bp):
TAAAAAGAAATAAAAGT
Found at i:72254589 original size:23 final size:22
Alignment explanation
Indices: 72254563--72254605 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
72254553 GATTTACATA
72254563 TAATTTATGTTAATTTTTTAATT
1 TAATTTAT-TTAATTTTTTAATT
*
72254586 TAATTTATTTTATTTTTTAA
1 TAATTTATTTAATTTTTTAA
72254606 ATATTTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (22 bp):
TAATTTATTTAATTTTTTAATT
Found at i:72268313 original size:25 final size:25
Alignment explanation
Indices: 72268285--72268332 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
72268275 GAGCTTCCCG
*
72268285 ATTCACAGCTTGTGA-GAGCATACTA
1 ATTCACAGCTCGT-ATGAGCATACTA
*
72268310 ATTCATAGCTCGTATGAGCATAC
1 ATTCACAGCTCGTATGAGCATAC
72268333 ATCAATATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 19 0.95
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
ATTCACAGCTCGTATGAGCATACTA
Found at i:72270029 original size:43 final size:42
Alignment explanation
Indices: 72269974--72270124 Score: 142
Period size: 43 Copynumber: 3.8 Consensus size: 42
72269964 ACTACTAAGA
*
72269974 TATGTTTACATGTAAGACCATGTTTGGGACATTAGAATTGTAT
1 TATGATTACATGTAAGACCATGTTTGGGACATTAG-ATTGTAT
72270017 TATGATTACATGTAAGACCA---TT-GG-C-----ATTGTAT
1 TATGATTACATGTAAGACCATGTTTGGGACATTAGATTGTAT
* * * * *
72270049 TGTGATTACGTGTAAGACCATGTCTGGGACATTAGCATCGTTT
1 TATGATTACATGTAAGACCATGTTTGGGACATTAG-ATTGTAT
* *
72270092 TATGATTTCGTGTAAGACCATGTTTGGGACATT
1 TATGATTACATGTAAGACCATGTTTGGGACATT
72270125 GGCATCGATA
Statistics
Matches: 88, Mismatches: 9, Indels: 22
0.74 0.08 0.18
Matches are distributed among these distances:
32 25 0.28
35 1 0.01
36 2 0.02
37 1 0.01
38 1 0.01
39 2 0.02
40 2 0.02
43 54 0.61
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.38
Consensus pattern (42 bp):
TATGATTACATGTAAGACCATGTTTGGGACATTAGATTGTAT
Found at i:72270149 original size:43 final size:43
Alignment explanation
Indices: 72270059--72270163 Score: 120
Period size: 43 Copynumber: 2.4 Consensus size: 43
72270049 TGTGATTACG
* * * *** *
72270059 TGTAAGACCATGTCTGGGACATTAGCATCGTTTTATGATTTCG
1 TGTAAGACCATGTTTGGGACATTAGCATCGATATATGAGAACA
* *
72270102 TGTAAGACCATGTTTGGGACATTGGCATCGATATGTGAGAACA
1 TGTAAGACCATGTTTGGGACATTAGCATCGATATATGAGAACA
*
72270145 TGTAAGACCATATTTGGGA
1 TGTAAGACCATGTTTGGGA
72270164 TATGAAATTG
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTTTGGGACATTAGCATCGATATATGAGAACA
Found at i:72271627 original size:11 final size:11
Alignment explanation
Indices: 72271611--72271642 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
72271601 TGAACACATA
72271611 AATGTATGTGT
1 AATGTATGTGT
72271622 AATGTATGTG-
1 AATGTATGTGT
72271632 AATG-ATGTGT
1 AATGTATGTGT
72271642 A
1 A
72271643 TTGTTCAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
9 5 0.25
10 5 0.25
11 10 0.50
ACGTcount: A:0.31, C:0.00, G:0.28, T:0.41
Consensus pattern (11 bp):
AATGTATGTGT
Found at i:72276607 original size:40 final size:40
Alignment explanation
Indices: 72276570--72276755 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
72276560 GCTACTCGTT
* *
72276570 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
* *
72276610 CAAATGCCTTCAGGACTTAACCCGGATTTAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
72276650 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
72276690 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
72276731 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
72276756 CATCATTCAA
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 113 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:72276674 original size:80 final size:81
Alignment explanation
Indices: 72276570--72276755 Score: 254
Period size: 80 Copynumber: 2.3 Consensus size: 81
72276560 GCTACTCGTT
*
72276570 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCAGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
72276633 GGATTTAGT-AATTCGCA
64 GGATATAGTCAATTAGCA
* **
72276650 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
72276715 ATATGGTCACTTAGCA
66 ATATAGTCAATTAGCA
72276731 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72276756 CATCATTCAA
Statistics
Matches: 94, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
79 3 0.03
80 79 0.84
81 12 0.13
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCAATTAGCA
Found at i:72292291 original size:43 final size:43
Alignment explanation
Indices: 72292212--72292318 Score: 99
Period size: 43 Copynumber: 2.5 Consensus size: 43
72292202 GTTTACATGT
* * * * *
72292212 AAGACCATGTCTGAGACAATGGCATTGTCTTGTGATTAAGAGA
1 AAGACCATGTCTGGGACATTGACATCGTCTTATGATTAAGAGA
** * *
72292255 AAGACCATGTCTGGGACATTGACATCGT-TATATGATTTCGTGT
1 AAGACCATGTCTGGGACATTGACATCGTCT-TATGATTAAGAGA
* *
72292298 AAGGCCATGTTTGGGACATTG
1 AAGACCATGTCTGGGACATTG
72292319 GTATCGATAT
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 1 0.02
43 51 0.98
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (43 bp):
AAGACCATGTCTGGGACATTGACATCGTCTTATGATTAAGAGA
Found at i:72306046 original size:19 final size:17
Alignment explanation
Indices: 72306008--72306047 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 17
72305998 TGCCCGTGTG
*
72306008 GGCCCACACACCCATAT
1 GGCCCACACACCCAAAT
72306025 GGCCCACACAGCCCAAATT
1 GGCCCACACA-CCCAAA-T
72306044 GGCC
1 GGCC
72306048 TTGGCCGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 10 0.50
18 5 0.25
19 5 0.25
ACGTcount: A:0.28, C:0.45, G:0.17, T:0.10
Consensus pattern (17 bp):
GGCCCACACACCCAAAT
Found at i:72311383 original size:27 final size:27
Alignment explanation
Indices: 72311345--72311403 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
72311335 TAAGAGACAA
72311345 TATGTTATATGACATGAAATGCCTATT
1 TATGTTATATGACATGAAATGCCTATT
72311372 TATGTTATATGACATGAAATGCCTATT
1 TATGTTATATGACATGAAATGCCTATT
72311399 TATGT
1 TATGT
72311404 GACCTGTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.42
Consensus pattern (27 bp):
TATGTTATATGACATGAAATGCCTATT
Found at i:72311541 original size:18 final size:20
Alignment explanation
Indices: 72311506--72311546 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
72311496 AGGTAACGGA
72311506 GTTGATTTTAAGGC-AAAAG
1 GTTGATTTTAAGGCAAAAAG
72311525 GTTGATTTTAA-GCAAAAAG
1 GTTGATTTTAAGGCAAAAAG
72311544 GTT
1 GTT
72311547 TAGTATGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 2 0.10
19 19 0.90
ACGTcount: A:0.37, C:0.05, G:0.24, T:0.34
Consensus pattern (20 bp):
GTTGATTTTAAGGCAAAAAG
Found at i:72313481 original size:23 final size:23
Alignment explanation
Indices: 72313439--72313565 Score: 123
Period size: 23 Copynumber: 5.6 Consensus size: 23
72313429 TCAGCTCGTA
* *
72313439 AGAGCTTACTATTTTTAGCTCATT
1 AGAGCTTACT-GTTTTAGCTCAAT
*
72313463 GGAGCTTACTGTTTTAGCTCAAT
1 AGAGCTTACTGTTTTAGCTCAAT
* * *
72313486 AGAGTTTACTG-CTTAGCTTAAT
1 AGAGCTTACTGTTTTAGCTCAAT
* *
72313508 AGAGCTTACTG-TTCAGCTCGAT
1 AGAGCTTACTGTTTTAGCTCAAT
* * *
72313530 AGAGCTTACCGTTTCAGCTCATT
1 AGAGCTTACTGTTTTAGCTCAAT
*
72313553 AAAGCTTACTGTT
1 AGAGCTTACTGTT
72313566 CATAAGCTCA
Statistics
Matches: 85, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
22 36 0.42
23 40 0.47
24 9 0.11
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.39
Consensus pattern (23 bp):
AGAGCTTACTGTTTTAGCTCAAT
Found at i:72313566 original size:45 final size:44
Alignment explanation
Indices: 72313429--72313567 Score: 127
Period size: 45 Copynumber: 3.1 Consensus size: 44
72313419 TATCGAAATA
* *
72313429 TCAGCTCG-TAAGAGCTTACTATTTTTAGCTCATTGGAGCTTACTGTT
1 TCAGCTCGAT-AGAGCTTAC-A-GTTTAGCTCATTAGAGCTTACTG-T
* * * * * * *
72313476 TTAGCTCAATAGAGTTTACTGCTTAGCTTAATAGAGCTTACTGT
1 TCAGCTCGATAGAGCTTACAGTTTAGCTCATTAGAGCTTACTGT
* *
72313520 TCAGCTCGATAGAGCTTACCGTTTCAGCTCATTAAAGCTTACTGT
1 TCAGCTCGATAGAGCTTACAGTTT-AGCTCATTAGAGCTTACTGT
72313565 TCA
1 TCA
72313568 TAAGCTCAGG
Statistics
Matches: 73, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
44 20 0.27
45 38 0.52
47 14 0.19
48 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.37
Consensus pattern (44 bp):
TCAGCTCGATAGAGCTTACAGTTTAGCTCATTAGAGCTTACTGT
Found at i:72318484 original size:11 final size:10
Alignment explanation
Indices: 72318425--72318483 Score: 57
Period size: 10 Copynumber: 5.7 Consensus size: 10
72318415 GTTATATATA
*
72318425 ATAATATAAT
1 ATAATAAAAT
72318435 ATGAATAAAAT
1 AT-AATAAAAT
**
72318446 ATAAGGAAAT
1 ATAATAAAAT
72318456 ATAATATAAA-
1 ATAATA-AAAT
72318466 ATAATAAGAAT
1 ATAATAA-AAT
72318477 ATAATAA
1 ATAATAA
72318484 GTATTTTGCA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
9 1 0.03
10 20 0.50
11 19 0.47
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (10 bp):
ATAATAAAAT
Found at i:72319355 original size:22 final size:21
Alignment explanation
Indices: 72319329--72319370 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
72319319 ATTAGGGCTA
72319329 AATTAGAAATAAATAAAAATGG
1 AATTAGAAAT-AATAAAAATGG
* *
72319351 AATTATAAATATTAAAAATG
1 AATTAGAAATAATAAAAATG
72319371 CAAGAGGACC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.29
Consensus pattern (21 bp):
AATTAGAAATAATAAAAATGG
Found at i:72321128 original size:206 final size:207
Alignment explanation
Indices: 72320767--72321530 Score: 1158
Period size: 206 Copynumber: 3.7 Consensus size: 207
72320757 AGATCTGCTT
* *
72320767 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
** * *
72320832 GCGAAAACCAAATCAGCTATGTCTTTGA-TTTGTTCCTTGTAAACACAAGGATGCCAAACCATCT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTTGTTCCTTGTAAACACAAGGATGCCAAACCATCT
* * * ** * *
72320896 TGGATCTACTTCAGTCTAATCATCTGAAGGTTAGATATGCTATGTGTCTGCCCTCCGTCGAATAT
131 TGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATATGCTATGTATCTGCTCTCCGTCGAATAT
72320961 GGAGACGCCAAA
196 GGAGACGCCAAA
*
72320973 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
72321038 ATGAAAGCTAAATCAGCTATGAT-TTCGA-TTTGTTCCTTGTAAACACAAGGATGCCAAATCATC
66 ATGAAAGCCAAATCAGCTATG-TCTTCGATTTTGTTCCTTGTAAACACAAGGATGCCAAACCATC
*
72321101 TTGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATTTGCTATGTATCTGCTCTCCGTCGAATA
130 TTGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATATGCTATGTATCTGCTCTCCGTCGAATA
*
72321166 TAGAGACGCCAAA
195 TGGAGACGCCAAA
* **
72321179 CTTCGATTTGTTCTCTGACAATATAGAA-ATGCCAAATCATCTTAGATTTGCTTCATTGTAAGCA
1 CTTCGATTTGTTCTCTGACAATACA-AAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCA
* *
72321243 CATGAAAGCCAAATAAGCTATGTCTTCGATTTTGTTCCTTGTAAGCACAAGGATGCCAAACCATC
65 CATGAAAGCCAAATCAGCTATGTCTTCGATTTTGTTCCTTGTAAACACAAGGATGCCAAACCATC
* * * *
72321308 TTGGATCTGCTTCAGTATAAACATCTAAAGGCCAGATCTGCTATGTATATGCTCTCCGTCAAATA
130 TTGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATATGCTATGTATCTGCTCTCCGTCGAATA
72321373 TGGAGACGCCAAA
195 TGGAGACGCCAAA
* * * *
72321386 CTTTGATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * *
72321451 GTGAAAGCCAAATCAACTATGTCTTTGATTTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTTGTTCCTTGTAAACACAAGGATGCCAAACCATCT
72321516 TGGATCTTGCTTCAG
131 TGGATC-TGCTTCAG
72321531 GCAGATCTGC
Statistics
Matches: 514, Mismatches: 38, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
205 1 0.00
206 269 0.52
207 236 0.46
208 8 0.02
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (207 bp):
CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
ATGAAAGCCAAATCAGCTATGTCTTCGATTTTGTTCCTTGTAAACACAAGGATGCCAAACCATCT
TGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATATGCTATGTATCTGCTCTCCGTCGAATAT
GGAGACGCCAAA
Found at i:72336733 original size:206 final size:206
Alignment explanation
Indices: 72336201--72336755 Score: 851
Period size: 205 Copynumber: 2.7 Consensus size: 206
72336191 AGCAATCGAG
* * * *
72336201 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACGAACCAAAGACATAGCT
1 CTGAAGTAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* * * *
72336266 GATTTGGCTTTCACGTGCTTACGATGAAGTAAATCTAAGATGATTTGGCATCTCTGTATTGTCAA
66 GATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* ** * *
72336331 AGAGCAAATCGAAGTCTGGCATCTCCACTTCAACGGGGAGCAGATGCATAGCAGATCTCACCTTC
131 AGAACAAATCGAAGTCTGGCATCTCCACTTCAACGGAAAGCAGATACATAGCAGATCTAACCTTC
* * *
72336396 AGATGTTTATA
196 AGACGATTAGA
**
72336407 CTGAAGT-AGATCCAAGATGGTTTGATATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGTAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
72336471 GATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
66 GATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * *
72336536 AGAACAAATCGAAGTCTTGCATTTCCACTTCAACGGAAAGCAGATACATAGCAGATCTAACCTTT
131 AGAACAAATCGAAGTCTGGCATCTCCACTTCAACGGAAAGCAGATACATAGCAGATCTAACCTTC
72336601 AGACGATTAGA
196 AGACGATTAGA
* *
72336612 CTGAAGTAAGATCCAAGATGATTTGGCATCCTTGTGCTTACCAGGAACAAATCGAAGACATAGCT
1 CTGAAGTAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* * * * *
72336677 GATTTGGCTTTCGCATGTTTATGCTGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAG
66 GATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
72336742 AGAACAAATCGAAG
131 AGAACAAATCGAAG
72336756 AAACAGATTT
Statistics
Matches: 318, Mismatches: 30, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
205 185 0.58
206 133 0.42
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (206 bp):
CTGAAGTAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
GATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
AGAACAAATCGAAGTCTGGCATCTCCACTTCAACGGAAAGCAGATACATAGCAGATCTAACCTTC
AGACGATTAGA
Found at i:72347718 original size:24 final size:25
Alignment explanation
Indices: 72347670--72347721 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 25
72347660 TATCGATCAT
*
72347670 GATGCTCGCAGGAGCTATATAACAG
1 GATGCTCGCAGAAGCTATATAACAG
72347695 GATGCTCG-AGAAGCCT-TATAACAG
1 GATGCTCGCAGAAG-CTATATAACAG
72347719 GAT
1 GAT
72347722 TTCTCATTCG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (25 bp):
GATGCTCGCAGAAGCTATATAACAG
Found at i:72350517 original size:24 final size:24
Alignment explanation
Indices: 72350422--72350530 Score: 121
Period size: 25 Copynumber: 4.4 Consensus size: 24
72350412 AGGAAGTGCA
* *
72350422 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
72350446 GAAAAAGGGCTTTTGCCCCAGTTTATT
1 --AAAAGGGC-TTTGCCCCAGTTTATC
72350473 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGC-TTTGCCCCAGTTTATC
* *
72350498 AAAAGGGCTTTGCCCTAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
72350521 AAAAGAGGCT
1 AAAAG-GGCT
72350531 GGGCCTCCAG
Statistics
Matches: 75, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
23 9 0.12
24 13 0.17
25 32 0.43
26 8 0.11
27 13 0.17
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:72350541 original size:49 final size:50
Alignment explanation
Indices: 72350433--72350542 Score: 127
Period size: 49 Copynumber: 2.2 Consensus size: 50
72350423 AAAGGGCTAT
* **
72350433 GCCCCAGTTTACCGAAAAAGGGCTTTTGCCCCAGTTTATTAAAAGGGCTTTT
1 GCCCCAGTTTATC--AAAAGGGCTTTTGCCCCAGTTTATTAAAAGGGCTTGG
*
72350485 GCCCCAGTTTATCAAAAGGGC-TTTGCCCTAG-TTATTAAAAGAGGC-TGG
1 GCCCCAGTTTATCAAAAGGGCTTTTGCCCCAGTTTATTAAAAG-GGCTTGG
72350533 GCCTCCAGTT
1 GCC-CCAGTT
72350543 ATATGATAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
48 14 0.27
49 18 0.35
50 8 0.15
52 12 0.23
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.29
Consensus pattern (50 bp):
GCCCCAGTTTATCAAAAGGGCTTTTGCCCCAGTTTATTAAAAGGGCTTGG
Found at i:72350774 original size:31 final size:31
Alignment explanation
Indices: 72350739--72350802 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
72350729 TGTTTACAGT
72350739 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
72350770 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
72350801 AA
1 AA
72350803 TACGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:72354490 original size:18 final size:19
Alignment explanation
Indices: 72354452--72354494 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
72354442 AATATTAAGA
*
72354452 AAAATAAATACTAAAAAAT
1 AAAATAAAGACTAAAAAAT
*
72354471 AAAATAAAGAC-AAAATAT
1 AAAATAAAGACTAAAAAAT
72354489 AAAATA
1 AAAATA
72354495 TCAGAATGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (19 bp):
AAAATAAAGACTAAAAAAT
Found at i:72356813 original size:40 final size:40
Alignment explanation
Indices: 72356769--72356847 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
72356759 AACACGAAGT
72356769 AAGCTTCATAGCTTAGTAAGCTCGTATGTGAACAACTTAC
1 AAGCTTCATAGCTTAGTAAGCTCGTATGTGAACAACTTAC
72356809 AAGCTTCATAGCTTAGTAAGCTCGTATGTGAACAACTTA
1 AAGCTTCATAGCTTAGTAAGCTCGTATGTGAACAACTTA
72356848 ATTCATATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (40 bp):
AAGCTTCATAGCTTAGTAAGCTCGTATGTGAACAACTTAC
Found at i:72360584 original size:5 final size:5
Alignment explanation
Indices: 72360574--72360604 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
72360564 ATTTTTCTAG
72360574 TAATT TAATT TAATT TAATT TAATT TAATT T
1 TAATT TAATT TAATT TAATT TAATT TAATT T
72360605 TACTATTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TAATT
Found at i:72367159 original size:13 final size:13
Alignment explanation
Indices: 72367141--72367166 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72367131 GAAGAGATTA
72367141 TTTCAGAAAATTT
1 TTTCAGAAAATTT
72367154 TTTCAGAAAATTT
1 TTTCAGAAAATTT
72367167 CTAGAGATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
TTTCAGAAAATTT
Found at i:72369101 original size:33 final size:33
Alignment explanation
Indices: 72369059--72369124 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
72369049 CAAAATAGTA
72369059 TCATACTTTCCTTATTAAATCTCTTTCTTAACT
1 TCATACTTTCCTTATTAAATCTCTTTCTTAACT
72369092 TCATACTTTCCTTATTAAATCTCTTTCTTAACT
1 TCATACTTTCCTTATTAAATCTCTTTCTTAACT
72369125 CTTAAAGTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (33 bp):
TCATACTTTCCTTATTAAATCTCTTTCTTAACT
Found at i:72369117 original size:17 final size:17
Alignment explanation
Indices: 72369064--72369118 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
72369054 TAGTATCATA
72369064 CTTTCCTTATTAAATCT
1 CTTTCCTTATTAAATCT
* *
72369081 CTTT-CTTAACTT-CAT-A
1 CTTTCCTT-A-TTAAATCT
72369097 CTTTCCTTATTAAATCT
1 CTTTCCTTATTAAATCT
72369114 CTTTC
1 CTTTC
72369119 TTAACTCTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 10
0.67 0.09 0.23
Matches are distributed among these distances:
15 2 0.07
16 10 0.34
17 15 0.52
18 2 0.07
ACGTcount: A:0.22, C:0.25, G:0.00, T:0.53
Consensus pattern (17 bp):
CTTTCCTTATTAAATCT
Found at i:72369397 original size:47 final size:47
Alignment explanation
Indices: 72369188--72369502 Score: 216
Period size: 47 Copynumber: 6.7 Consensus size: 47
72369178 GGGTTAAGTT
* * * * *
72369188 GCCGATGCCATATCCCAGACATGGTCTTACACTAGCTATCTTCATCGAG
1 GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTATCATCATTGAG
* * * * * * *
72369237 GCTGATGCTATGTCCCAGACATGGTCTTACACTAGCTCTCGT-GTATAAG
1 GCCGATGC-ATGTCCCAGACA-CGTCTTACACTGGCTATCATCAT-TGAG
* * * * * * *
72369286 TGCTGATGTATATTCCAGACATGTCTTACACTGGC-ATGAAGC-TT-A-
1 -GCCGATGCATGTCCCAGACACGTCTTACACTGGCTAT-CATCATTGAG
* *
72369331 GTCGATGCATGTCCTAGACACGTCTTACACTGGCTATCATCATTGAG
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATTGAG
* *
72369378 GCCGATGCATGTCCCAGACACGTCTTGCACTGGC-ACTCATC-TCT-AC
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTA-TCATCAT-TGAG
* * * *
72369424 GCCGATGCCATGTCCCAGACATGATCTTACACTGGCTATCGT-AATGTG
1 GCCGATG-CATGTCCCAGACACG-TCTTACACTGGCTATCATCATTGAG
*
72369472 GCTGATGCATGTCCCAGACACGTCTTACACT
1 GCCGATGCATGTCCCAGACACGTCTTACACT
72369503 AGCCCTCGTC
Statistics
Matches: 213, Mismatches: 37, Indels: 35
0.75 0.13 0.12
Matches are distributed among these distances:
44 29 0.14
45 4 0.02
46 21 0.10
47 68 0.32
48 35 0.16
49 49 0.23
50 7 0.03
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATTGAG
Found at i:72369482 original size:94 final size:93
Alignment explanation
Indices: 72369240--72369554 Score: 298
Period size: 94 Copynumber: 3.4 Consensus size: 93
72369230 CATCGAGGCT
* * * * * * *
72369240 GATGCTATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGT-GCTGATGTATATTCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATC--GTA-ATGTGGCTGATGCATGTCCCAG
* * * *
72369304 ACATGTCTTACACTGGCA-TGAAGCT-TAGTC
63 ACACGTCTTACACTGGCACT-CATCTCTAGCC
* * * * * *
72369334 GATG-CATGTCCTAGACA-CGTCTTACACTGGCTATCATCATTGAGGCCGATGCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGT-AATGTGGCTGATGCATGTCCCAGAC
*
72369397 ACGTCTTGCACTGGCACTCATCTCTACGCC
65 ACGTCTTACACTGGCACTCATCTCTA-GCC
*
72369427 GATGCCATGTCCCAGACATGATCTTACACTGGCTATCGTAATGTGGCTGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAATGTGGCTGATGCATGTCCCAGACA
* * * * *
72369492 CGTCTTACACTAGCCCTCGTCTCAATGCT
66 CGTCTTACACTGGCACTCATCTCTA-GCC
* *
72369521 GATGCCATGTCCCAGAAATGGTCTTGCACTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
72369555 CTCACATAAC
Statistics
Matches: 179, Mismatches: 35, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
90 2 0.01
91 33 0.18
92 18 0.10
93 17 0.09
94 92 0.51
95 17 0.09
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAATGTGGCTGATGCATGTCCCAGACA
CGTCTTACACTGGCACTCATCTCTAGCC
Found at i:72369530 original size:47 final size:46
Alignment explanation
Indices: 72369237--72369536 Score: 168
Period size: 47 Copynumber: 6.4 Consensus size: 46
72369227 CTTCATCGAG
* * * * *
72369237 GCTGATGCTATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGT
1 GCTGATGC-ATGTCCCAGACA-CGTCTTACACTGGCACTCGTCT-CAA-T
* * * * * * *
72369287 GCTGATGTATATTCCAGACATGTCTTACACTGGCA-T-GAAGCTTAGT
1 GCTGATGCATGTCCCAGACACGTCTTACACTGGCACTCG--TCTCAAT
* * ** *
72369333 -C-GATGCATGTCCTAGACACGTCTTACACTGGCTA-TCATCATTGAG
1 GCTGATGCATGTCCCAGACACGTCTTACACTGGC-ACTCGTC-TCAAT
* * * * *
72369378 GCCGATGCATGTCCCAGACACGTCTTGCACTGGCACTCATCTCTAC
1 GCTGATGCATGTCCCAGACACGTCTTACACTGGCACTCGTCTCAAT
* *
72369424 GCCGATGCCATGTCCCAGACATGATCTTACACTGGCTA-TCG--T-AATGT
1 GCTGATG-CATGTCCCAGACACG-TCTTACACTGGC-ACTCGTCTCAA--T
* *
72369471 GGCTGATGCATGTCCCAGACACGTCTTACACTAGCCCTCGTCTCAAT
1 -GCTGATGCATGTCCCAGACACGTCTTACACTGGCACTCGTCTCAAT
72369518 GCTGATGCCATGTCCCAGA
1 GCTGATG-CATGTCCCAGA
72369537 AATGGTCTTG
Statistics
Matches: 198, Mismatches: 33, Indels: 41
0.73 0.12 0.15
Matches are distributed among these distances:
44 27 0.14
45 6 0.03
46 35 0.18
47 77 0.39
48 33 0.17
49 13 0.07
50 7 0.04
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (46 bp):
GCTGATGCATGTCCCAGACACGTCTTACACTGGCACTCGTCTCAAT
Found at i:72376694 original size:80 final size:79
Alignment explanation
Indices: 72376610--72376781 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 79
72376600 GGACTAAGAT
*
72376610 CCGAAGGCATTTGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATGACAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
72376674 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * ** * * * *
72376690 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
72376755 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
72376769 CCGAAGGCATTTG
1 CCGAAGGCATTTG
72376782 AACGAGGAGC
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 38 0.49
80 37 0.47
81 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:72376761 original size:39 final size:39
Alignment explanation
Indices: 72376557--72376779 Score: 200
Period size: 40 Copynumber: 5.6 Consensus size: 39
72376547 TTGAATGCTG
* * * * *
72376557 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
72376597 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
72376636 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* **
72376677 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
72376717 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
72376756 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
72376780 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
39 39 0.25
40 102 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:72376799 original size:79 final size:80
Alignment explanation
Indices: 72376637--72376814 Score: 198
Period size: 79 Copynumber: 2.2 Consensus size: 80
72376627 AGATACAAAT
* * * *
72376637 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** ** *
72376702 GTGCGAGTTGTTAAA
66 GAACGAGGAGCTAAA
* * * * *
72376717 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
72376781 GAACGAGGAGCTATA
66 GAACGAGGAGCTAAA
*
72376796 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
72376815 TACGTGATTT
Statistics
Matches: 81, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.17
79 49 0.60
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGGAGCTAAA
Found at i:72378415 original size:43 final size:43
Alignment explanation
Indices: 72378368--72378480 Score: 140
Period size: 43 Copynumber: 2.6 Consensus size: 43
72378358 GGGATTTAGA
*
72378368 GTAAGACCATGTTTGGGACATTGGCATCGTA-ATTGTGATT-CAT
1 GTAAGACCATGTCTGGGACATTGGCATCG-ACA-TGTGATTACAT
* * *
72378411 GTAAGACCCTGTCTGGGACAGTCGCATCGACATGTGATTACAT
1 GTAAGACCATGTCTGGGACATTGGCATCGACATGTGATTACAT
* *
72378454 GTAAGACCACGTCTGGGACGTTGGCAT
1 GTAAGACCATGTCTGGGACATTGGCAT
72378481 TGTACGATAT
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 8 0.14
43 51 0.86
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (43 bp):
GTAAGACCATGTCTGGGACATTGGCATCGACATGTGATTACAT
Found at i:72382413 original size:55 final size:55
Alignment explanation
Indices: 72382341--72382472 Score: 151
Period size: 55 Copynumber: 2.4 Consensus size: 55
72382331 CATGCCCTTA
* * * * **
72382341 ACCCGTGTG-CAACACTGACTT-TAGGGCACGGCAATGACACACGTCTGTGTGGCCT
1 ACCCGTG-GACAATACTGACTTATA-GACACGACAATGACACACGCCCATGTGGCCT
* *
72382396 ACCCGTGGACAATACTGACTTATAGACACGACTATGTCACACGCCCATGTGGCCT
1 ACCCGTGGACAATACTGACTTATAGACACGACAATGACACACGCCCATGTGGCCT
*
72382451 ACCTGTGGACAATACTGACTTA
1 ACCCGTGGACAATACTGACTTA
72382473 AAAGTTTAAG
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
54 1 0.02
55 63 0.95
56 2 0.03
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (55 bp):
ACCCGTGGACAATACTGACTTATAGACACGACAATGACACACGCCCATGTGGCCT
Found at i:72383325 original size:44 final size:46
Alignment explanation
Indices: 72383269--72383440 Score: 138
Period size: 44 Copynumber: 3.7 Consensus size: 46
72383259 TTGTATAAGT
*
72383269 GCTGATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCT-TA-
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACGAAGCTCTAC
** * ** *
72383313 GCTGATGCATGTCCCAGACACATCTTACACTGGCACTCATCTCTAC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACGAAGCTCTAC
* * * * *
72383359 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTATCGTAA--TGT-G
1 GCTGATG-CATGTCCCAGACAT-GTCTTACACTAGC-A-CG-AAGCTCTAC
* *
72383407 GCTGATGCATGTCCCAGACACGTTTTACACTAGC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGC
72383441 CCTCGTCTCA
Statistics
Matches: 101, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
44 35 0.35
45 2 0.02
46 16 0.16
47 26 0.26
48 17 0.17
49 3 0.03
50 1 0.01
51 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCACGAAGCTCTAC
Found at i:72383375 original size:47 final size:47
Alignment explanation
Indices: 72383220--72383493 Score: 157
Period size: 48 Copynumber: 5.8 Consensus size: 47
72383210 GGTTAAGTTA
* * * * * * *
72383220 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTTGTATAAGTG
1 CCGATG-CATGTCCCAGACATCGTCTTACACTGGCACTCATCTCT-A-CG
* * * ** *
72383270 CTGATGCATGTCCCAAACAT-GTCTTACACTAGCACGAAGCT-TA-G
1 CCGATGCATGTCCCAGACATCGTCTTACACTGGCACTCATCTCTACG
* *
72383314 CTGATGCATGTCCCAGACA-CATCTTACACTGGCACTCATCTCTACG
1 CCGATGCATGTCCCAGACATCGTCTTACACTGGCACTCATCTCTACG
* * * * * *
72383360 CCGATGCCATGTCCCAGACATGGTCTTACATTGGCTA-TCGTAATGT-GG
1 CCGATG-CATGTCCCAGACATCGTCTTACACTGGC-ACTCAT-CTCTACG
* * * * * * *
72383408 CTGATGCATGTCCCAGACA-CGTTTTACACTAGCCCTCGTCTCAATG
1 CCGATGCATGTCCCAGACATCGTCTTACACTGGCACTCATCTCTACG
* * *
72383454 CCGATTCCATGTCCCAGACATGGTCTTACACTGGCTCTCA
1 CCGA-TGCATGTCCCAGACATCGTCTTACACTGGCACTCA
72383494 CATAACCTAA
Statistics
Matches: 174, Mismatches: 39, Indels: 24
0.73 0.16 0.10
Matches are distributed among these distances:
44 35 0.20
45 3 0.02
46 25 0.14
47 41 0.24
48 49 0.28
49 16 0.09
50 5 0.03
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
CCGATGCATGTCCCAGACATCGTCTTACACTGGCACTCATCTCTACG
Found at i:72383423 original size:94 final size:94
Alignment explanation
Indices: 72383313--72383489 Score: 273
Period size: 94 Copynumber: 1.9 Consensus size: 94
72383303 ACGAAGCTTA
* *
72383313 GCTGATGCATGTCCCAGACACATCTTACACTGGCACTCATCTCTACGCCGATGCCATGTCCCAGA
1 GCTGATGCATGTCCCAGACACATCTTACACTAGCACTCATCTCAACGCCGATGCCATGTCCCAGA
*
72383378 CATGGTCTTACATTGGCTATCGTAATGTG
66 CATGGTCTTACACTGGCTATCGTAATGTG
* * * * * *
72383407 GCTGATGCATGTCCCAGACACGTTTTACACTAGCCCTCGTCTCAATGCCGATTCCATGTCCCAGA
1 GCTGATGCATGTCCCAGACACATCTTACACTAGCACTCATCTCAACGCCGATGCCATGTCCCAGA
72383472 CATGGTCTTACACTGGCT
66 CATGGTCTTACACTGGCT
72383490 CTCACATAAC
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 74 1.00
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.28
Consensus pattern (94 bp):
GCTGATGCATGTCCCAGACACATCTTACACTAGCACTCATCTCAACGCCGATGCCATGTCCCAGA
CATGGTCTTACACTGGCTATCGTAATGTG
Found at i:72392552 original size:26 final size:26
Alignment explanation
Indices: 72392516--72392625 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
72392506 CATGAAATTC
72392516 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
72392542 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
72392568 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
72392594 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
72392620 TTATCA
1 TTATCA
72392626 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:72398475 original size:14 final size:14
Alignment explanation
Indices: 72398456--72398483 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
72398446 CCAAAGAGAT
72398456 CATGAAAAATTTGG
1 CATGAAAAATTTGG
72398470 CATGAAAAATTTGG
1 CATGAAAAATTTGG
72398484 AGGATTTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (14 bp):
CATGAAAAATTTGG
Found at i:72402331 original size:18 final size:18
Alignment explanation
Indices: 72402296--72402331 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
72402286 AGTTTTCGTT
* *
72402296 AGATCTTTCATCCGTTAC
1 AGATCTTTCAACCATTAC
72402314 AGATCTTTCAACCATTAC
1 AGATCTTTCAACCATTAC
72402332 GAATATTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.28, G:0.08, T:0.36
Consensus pattern (18 bp):
AGATCTTTCAACCATTAC
Found at i:72406838 original size:27 final size:27
Alignment explanation
Indices: 72406807--72406984 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
72406797 TAAATTGTAC
*
72406807 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
72406834 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
72406860 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
72406888 GGCACTAAGTGTGCGAGGTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
72406916 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
72406943 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
72406970 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72406985 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:72406868 original size:54 final size:55
Alignment explanation
Indices: 72406807--72406984 Score: 218
Period size: 54 Copynumber: 3.3 Consensus size: 55
72406797 TAAATTGTAC
* **
72406807 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * ** *
72406862 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGA-GTTGAATATGAT
* * *
72406916 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
72406970 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72406985 GACTCAATAT
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
54 62 0.59
55 43 0.41
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:72406921 original size:82 final size:81
Alignment explanation
Indices: 72406808--72406963 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
72406798 AAATTGTACA
* * *
72406808 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72406872 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72406889 GCACTAAGTGTGCGAGGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-GTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72406954 TGCGAGTTGA
65 TGCGAATTGA
72406964 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72406975 original size:82 final size:81
Alignment explanation
Indices: 72406804--72406984 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
72406794 GATTAAATTG
* * *
72406804 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
72406869 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72406885 TGCGGCACTAAGTGTGCGAGGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-GTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
72406949 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72406967 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72406985 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72408630 original size:27 final size:27
Alignment explanation
Indices: 72408599--72408776 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
72408589 TAAATTGTAC
*
72408599 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
72408626 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
72408652 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
72408680 GGCACTAAGTGTGCGAGGTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
72408708 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
72408735 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
72408762 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72408777 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:72408663 original size:54 final size:55
Alignment explanation
Indices: 72408599--72408776 Score: 218
Period size: 54 Copynumber: 3.3 Consensus size: 55
72408589 TAAATTGTAC
* **
72408599 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * ** *
72408654 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGA-GTTGAATATGAT
* * *
72408708 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
72408762 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72408777 GACTCAATAT
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
54 62 0.59
55 43 0.41
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:72408713 original size:82 final size:81
Alignment explanation
Indices: 72408600--72408755 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
72408590 AAATTGTACA
* * *
72408600 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72408664 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72408681 GCACTAAGTGTGCGAGGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-GTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72408746 TGCGAGTTGA
65 TGCGAATTGA
72408756 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72408767 original size:82 final size:81
Alignment explanation
Indices: 72408596--72408776 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
72408586 GATTAAATTG
* * *
72408596 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
72408661 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72408677 TGCGGCACTAAGTGTGCGAGGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-GTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
72408741 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72408759 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72408777 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72416361 original size:27 final size:27
Alignment explanation
Indices: 72416330--72416507 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
72416320 TAAATTGTAC
*
72416330 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
72416357 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
72416383 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
72416411 GGCACTAAGTGTGCGAGGTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
72416439 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
72416466 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
72416493 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72416508 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:72416391 original size:54 final size:55
Alignment explanation
Indices: 72416330--72416507 Score: 218
Period size: 54 Copynumber: 3.3 Consensus size: 55
72416320 TAAATTGTAC
* **
72416330 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * ** *
72416385 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGA-GTTGAATATGAT
* * *
72416439 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
72416493 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72416508 GACTCAATAT
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
54 62 0.59
55 43 0.41
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:72416444 original size:82 final size:81
Alignment explanation
Indices: 72416331--72416486 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
72416321 AAATTGTACA
* * *
72416331 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72416395 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72416412 GCACTAAGTGTGCGAGGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-GTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72416477 TGCGAGTTGA
65 TGCGAATTGA
72416487 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72416498 original size:82 final size:81
Alignment explanation
Indices: 72416327--72416507 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
72416317 GATTAAATTG
* * *
72416327 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
72416392 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72416408 TGCGGCACTAAGTGTGCGAGGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-GTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
72416472 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72416490 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72416508 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72420090 original size:28 final size:28
Alignment explanation
Indices: 72420059--72420145 Score: 76
Period size: 28 Copynumber: 3.1 Consensus size: 28
72420049 ATAAGGGTAA
72420059 TTCAGTAATTATTACCTATTGCTAAGGT
1 TTCAGTAATTATTACCTATTGCTAAGGT
** *
72420087 TTCA-TGCTCATT--C-A-TGCATAAGGGTAT
1 TTCAGTAATTATTACCTATTGC-TAA-GG--T
72420114 TTCAGTAATTATTACCTATTGCTAAGGT
1 TTCAGTAATTATTACCTATTGCTAAGGT
72420142 TTCA
1 TTCA
72420146 TGCTCATTCT
Statistics
Matches: 44, Mismatches: 6, Indels: 18
0.65 0.09 0.26
Matches are distributed among these distances:
23 3 0.07
24 4 0.09
25 3 0.07
27 10 0.23
28 14 0.32
30 3 0.07
31 4 0.09
32 3 0.07
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (28 bp):
TTCAGTAATTATTACCTATTGCTAAGGT
Found at i:72420106 original size:55 final size:55
Alignment explanation
Indices: 72420044--72420154 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
72420034 TGTAATTTTG
72420044 CATGCATAAGGGTAATTCAGTAATTATTACCTATTGCTAAGGTTTCATGCTCATT
1 CATGCATAAGGGTAATTCAGTAATTATTACCTATTGCTAAGGTTTCATGCTCATT
*
72420099 CATGCATAAGGGTATTTCAGTAATTATTACCTATTGCTAAGGTTTCATGCTCATT
1 CATGCATAAGGGTAATTCAGTAATTATTACCTATTGCTAAGGTTTCATGCTCATT
72420154 C
1 C
72420155 TAACGTTTAC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (55 bp):
CATGCATAAGGGTAATTCAGTAATTATTACCTATTGCTAAGGTTTCATGCTCATT
Found at i:72420140 original size:31 final size:31
Alignment explanation
Indices: 72420050--72420140 Score: 81
Period size: 27 Copynumber: 3.2 Consensus size: 31
72420040 TTTGCATGCA
*
72420050 TAAGGGTAATTCAGTAATTATTACCTATTGC
1 TAAGGGTATTTCAGTAATTATTACCTATTGC
** *
72420081 TAA-GG--TTTCA-TGCTCATT--C-A-TGC
1 TAAGGGTATTTCAGTAATTATTACCTATTGC
72420104 ATAAGGGTATTTCAGTAATTATTACCTATTGC
1 -TAAGGGTATTTCAGTAATTATTACCTATTGC
72420136 TAAGG
1 TAAGG
72420141 TTTCATGCTC
Statistics
Matches: 44, Mismatches: 7, Indels: 18
0.64 0.10 0.26
Matches are distributed among these distances:
23 3 0.07
24 4 0.09
25 3 0.07
27 10 0.23
28 9 0.20
30 3 0.07
31 9 0.20
32 3 0.07
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (31 bp):
TAAGGGTATTTCAGTAATTATTACCTATTGC
Found at i:72446042 original size:40 final size:40
Alignment explanation
Indices: 72445998--72446265 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
72445988 GCAAACACAT
* * *
72445998 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72446038 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
72446078 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72446118 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72446158 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
72446198 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
72446238 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
72446266 TCCAATGCTC
Statistics
Matches: 217, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:72453308 original size:40 final size:40
Alignment explanation
Indices: 72453264--72453469 Score: 333
Period size: 40 Copynumber: 5.2 Consensus size: 40
72453254 GCAAACACAT
* * *
72453264 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72453304 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
72453344 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72453384 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72453424 TTGCCTTCGGGTCATAGCCCGGAT-TATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
72453463 TTGCCTT
1 TTGCCTT
72453470 ATATCAACTC
Statistics
Matches: 156, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 21 0.13
40 135 0.87
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:72453474 original size:23 final size:23
Alignment explanation
Indices: 72453448--72453492 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
72453438 TAGCCCGGAT
72453448 TATCAACTCGCATAATTGCCTTA
1 TATCAACTCGCATAATTGCCTTA
72453471 TATCAACTCGCATAATTGCCTT
1 TATCAACTCGCATAATTGCCTT
72453493 CGGGTCTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.36
Consensus pattern (23 bp):
TATCAACTCGCATAATTGCCTTA
Found at i:72453504 original size:62 final size:63
Alignment explanation
Indices: 72453407--72453532 Score: 227
Period size: 62 Copynumber: 2.0 Consensus size: 63
72453397 TTAGCCCGGA
*
72453407 TATATCATCTCGCATAATTGCCTTCGGGTCATAGCCCGGAT-TATCAACTCGCATAATTGCCT
1 TATATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAATTGCCT
*
72453469 TATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCT
1 TATATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAATTGCCT
72453532 T
1 T
72453533 CGGGTCTTAG
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
62 39 0.64
63 22 0.36
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.33
Consensus pattern (63 bp):
TATATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAATTGCCT
Found at i:72453524 original size:40 final size:40
Alignment explanation
Indices: 72453469--72453553 Score: 161
Period size: 40 Copynumber: 2.1 Consensus size: 40
72453459 ATAATTGCCT
72453469 TATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGA
1 TATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGA
*
72453509 TATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCTGGA
1 TATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGA
72453549 TATAT
1 TATAT
72453554 TCCAATGCTC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33
Consensus pattern (40 bp):
TATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGA
Found at i:72468260 original size:22 final size:21
Alignment explanation
Indices: 72468219--72468269 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
72468209 CGAAAATCGT
*
72468219 AATTAG-ATTATATAATTAAA
1 AATTAGAATTATATAAATAAA
72468239 CAATTAGAATTA-ATTAAATAAA
1 -AATTAGAATTATA-TAAATAAA
72468261 ATATTAGAA
1 A-ATTAGAA
72468270 CATTTAGAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 8 0.31
22 18 0.69
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (21 bp):
AATTAGAATTATATAAATAAA
Found at i:72470728 original size:17 final size:17
Alignment explanation
Indices: 72470708--72470791 Score: 69
Period size: 17 Copynumber: 4.9 Consensus size: 17
72470698 TTATGATAAA
72470708 GCATGAACTGTTATTTT
1 GCATGAACTGTTATTTT
* *
72470725 GCATGAATTGTTATTTG
1 GCATGAACTGTTATTTT
* * * *
72470742 GTATGAACTGATGTTTC
1 GCATGAACTGTTATTTT
** *
72470759 ATATGAACTATTATTTT
1 GCATGAACTGTTATTTT
* *
72470776 GCATGAGCTGTCATTT
1 GCATGAACTGTTATTT
72470792 GGTAAAAACT
Statistics
Matches: 50, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
17 50 1.00
ACGTcount: A:0.25, C:0.11, G:0.19, T:0.45
Consensus pattern (17 bp):
GCATGAACTGTTATTTT
Found at i:72470765 original size:51 final size:51
Alignment explanation
Indices: 72470710--72470817 Score: 144
Period size: 51 Copynumber: 2.1 Consensus size: 51
72470700 ATGATAAAGC
* * * ** *
72470710 ATGAACTGTTATTTTGCATGAATTGTTATTTGGTATGAACTGATGTTTCAT
1 ATGAACTATTATTTTGCATGAACTGTCATTTGGTAAAAACTGATATTTCAT
* *
72470761 ATGAACTATTATTTTGCATGAGCTGTCATTTGGTAAAAACTGTTATTTCAT
1 ATGAACTATTATTTTGCATGAACTGTCATTTGGTAAAAACTGATATTTCAT
72470812 ATGAAC
1 ATGAAC
72470818 AGATGTTTGG
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.29, C:0.10, G:0.18, T:0.44
Consensus pattern (51 bp):
ATGAACTATTATTTTGCATGAACTGTCATTTGGTAAAAACTGATATTTCAT
Found at i:72479245 original size:40 final size:40
Alignment explanation
Indices: 72479063--72479285 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
72479053 TCCTCGTTCA
* * * * *
72479063 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
72479102 AATGCCTTCGGGACATAACTCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
72479142 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
72479182 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
72479222 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
72479262 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
72479286 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 36 0.23
40 114 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:72479294 original size:41 final size:41
Alignment explanation
Indices: 72479217--72479294 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
72479207 TTAGTATCTC
* * *
72479217 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
72479258 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
72479295 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:72482976 original size:40 final size:40
Alignment explanation
Indices: 72482932--72483193 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
72482922 GCTCCTCGTT
* *
72482932 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
72482972 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
72483012 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
72483051 CAAATGCCTTTGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
72483090 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
72483129 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
72483170 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72483194 CATCATTCAA
Statistics
Matches: 201, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 124 0.62
40 64 0.32
41 11 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:72490976 original size:39 final size:39
Alignment explanation
Indices: 72490859--72491068 Score: 325
Period size: 39 Copynumber: 5.3 Consensus size: 39
72490849 GCTCCTCATT
* *
72490859 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
72490899 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
72490939 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
72490978 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
72491017 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
72491056 CAAATGCCTTCGG
1 CAAATGCCTTCGG
72491069 ATCTTAGTCC
Statistics
Matches: 162, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
39 114 0.70
40 46 0.28
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:72491104 original size:78 final size:80
Alignment explanation
Indices: 72490859--72491117 Score: 324
Period size: 78 Copynumber: 3.3 Consensus size: 80
72490849 GCTCCTCATT
* * *
72490859 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGACTTAGCCC
72490922 GGAT-TTAGTAAC-TCGCA
63 GGATATTAGT-ACTTCGCA
*
72490939 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGACTTAGCCCGGA
72491003 -ATTAGTA-TCTCGCA
66 TATTAGTACT-TCGCA
*
72491017 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGA-CTTAGCCCGG
*
72491081 ATATT-GTCACTTAGCA
65 ATATTAGT-ACTTCGCA
72491097 C-AA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
72491118 AGACATCATT
Statistics
Matches: 162, Mismatches: 7, Indels: 21
0.85 0.04 0.11
Matches are distributed among these distances:
77 1 0.01
78 85 0.52
79 51 0.31
80 24 0.15
81 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGACTTAGCCCGGA
TATTAGTACTTCGCA
Found at i:72496611 original size:28 final size:28
Alignment explanation
Indices: 72496571--72496671 Score: 134
Period size: 28 Copynumber: 3.6 Consensus size: 28
72496561 AAAAATTTTC
*
72496571 TCGCACACTTAGTGCTCAATAACTGATT
1 TCGCACACTTAGTGCTCAATAACCGATT
* *
72496599 TCGCACACTTAGTGCTCGGAA-ATCCAATT
1 TCGCACACTTAGTGCTC--AATAACCGATT
*
72496628 T-GCACACTTAGTGCTCAATGACCGATT
1 TCGCACACTTAGTGCTCAATAACCGATT
72496655 TCGCACACTTAGTGCTC
1 TCGCACACTTAGTGCTC
72496672 GGTATCAAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
26 2 0.03
27 6 0.10
28 47 0.75
29 6 0.10
30 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.30
Consensus pattern (28 bp):
TCGCACACTTAGTGCTCAATAACCGATT
Found at i:72496655 original size:56 final size:55
Alignment explanation
Indices: 72496573--72496687 Score: 185
Period size: 56 Copynumber: 2.1 Consensus size: 55
72496563 AAATTTTCTC
* *
72496573 GCACACTTAGTGCTCAATAACTGATTTCGCACACTTAGTGCTCGGAAATCCAATTT
1 GCACACTTAGTGCTCAATAACCGATTTCGCACACTTAGTGCTCGG-AATCAAATTT
* *
72496629 GCACACTTAGTGCTCAATGACCGATTTCGCACACTTAGTGCTCGGTATCAAATTT
1 GCACACTTAGTGCTCAATAACCGATTTCGCACACTTAGTGCTCGGAATCAAATTT
72496684 GCAC
1 GCAC
72496688 GTTTAGTGAA
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
55 12 0.22
56 43 0.78
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (55 bp):
GCACACTTAGTGCTCAATAACCGATTTCGCACACTTAGTGCTCGGAATCAAATTT
Found at i:72503953 original size:28 final size:26
Alignment explanation
Indices: 72503913--72504036 Score: 122
Period size: 28 Copynumber: 4.5 Consensus size: 26
72503903 AATTTTCTCT
*
72503913 CACACTTAGTGCTCAATAACCGATTTCG
1 CACACTTAGTGCTCAA-AACCAATTT-G
*
72503941 CACACTTAGTGCTCGGAAATCCAATTTG
1 CACACTTAGTGCTC--AAAACCAATTTG
* * * *
72503969 CACACTTAATGCTTAAAGCCAACTTG
1 CACACTTAGTGCTCAAAACCAATTTG
* *
72503995 CACACTTAGTGCTCAATGACCGATTTCG
1 CACACTTAGTGCTCAA-AACCAATTT-G
72504023 CACACTTAGTGCTC
1 CACACTTAGTGCTC
72504037 GGTATCAAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
26 24 0.30
27 5 0.06
28 42 0.52
29 7 0.09
30 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (26 bp):
CACACTTAGTGCTCAAAACCAATTTG
Found at i:72505488 original size:19 final size:18
Alignment explanation
Indices: 72505460--72505497 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
72505450 TGTTTAATTC
72505460 TAATAATAATATAATCATA
1 TAATAATAATATAAT-ATA
*
72505479 TAATATTAATATAATATA
1 TAATAATAATATAATATA
72505497 T
1 T
72505498 TTACTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
TAATAATAATATAATATA
Found at i:72512826 original size:22 final size:22
Alignment explanation
Indices: 72512801--72512846 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
72512791 TAAAACCCTA
*
72512801 TTTTTCCTTTCTTTTCTT-TCCC
1 TTTTT-CTTTCTTTCCTTCTCCC
72512823 TTTTTCTTTCTTTCCTTCTCCC
1 TTTTTCTTTCTTTCCTTCTCCC
72512845 TT
1 TT
72512847 GTTTTTCGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTTTCTTTCTTTCCTTCTCCC
Found at i:72512853 original size:21 final size:21
Alignment explanation
Indices: 72512807--72512853 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
72512797 CCTATTTTTC
* *
72512807 CTTTCTTTTCTTTCCCTTTTT
1 CTTTCTTTCCTTTCCCTTGTT
72512828 CTTTCTTTCCTTCTCCCTTGTT
1 CTTTCTTTCCTT-TCCCTTGTT
72512850 -TTTC
1 CTTTC
72512854 GTTTGGCTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.00, C:0.32, G:0.02, T:0.66
Consensus pattern (21 bp):
CTTTCTTTCCTTTCCCTTGTT
Found at i:72524428 original size:18 final size:17
Alignment explanation
Indices: 72524405--72524449 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
72524395 TATAGCAGCC
72524405 CACATTTTTCCATCATTT
1 CACATTTTTCCA-CATTT
*
72524423 CACATTTCTACCACATTT
1 CACATTT-TTCCACATTT
*
72524441 TACATTTTT
1 CACATTTTT
72524450 TGCAAAAAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 1 0.04
18 18 0.78
19 4 0.17
ACGTcount: A:0.24, C:0.27, G:0.00, T:0.49
Consensus pattern (17 bp):
CACATTTTTCCACATTT
Found at i:72532903 original size:12 final size:12
Alignment explanation
Indices: 72532886--72532910 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72532876 AAAACCCATA
72532886 AAAATGAACAAC
1 AAAATGAACAAC
72532898 AAAATGAACAAC
1 AAAATGAACAAC
72532910 A
1 A
72532911 TATCAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.16, G:0.08, T:0.08
Consensus pattern (12 bp):
AAAATGAACAAC
Found at i:72534330 original size:12 final size:12
Alignment explanation
Indices: 72534313--72534337 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72534303 AAAACCCATA
72534313 AAAATGAACAAC
1 AAAATGAACAAC
72534325 AAAATGAACAAC
1 AAAATGAACAAC
72534337 A
1 A
72534338 TATCAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.16, G:0.08, T:0.08
Consensus pattern (12 bp):
AAAATGAACAAC
Found at i:72535760 original size:12 final size:12
Alignment explanation
Indices: 72535743--72535767 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72535733 AAAACCCATA
72535743 AAAATGAACAAC
1 AAAATGAACAAC
72535755 AAAATGAACAAC
1 AAAATGAACAAC
72535767 A
1 A
72535768 TATCAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.16, G:0.08, T:0.08
Consensus pattern (12 bp):
AAAATGAACAAC
Found at i:72543641 original size:14 final size:15
Alignment explanation
Indices: 72543612--72543645 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
72543602 AGGAGAGAAT
*
72543612 GATGAATGAGTGAGG
1 GATGAAGGAGTGAGG
72543627 GATGAAGGA-TGAGG
1 GATGAAGGAGTGAGG
72543641 GATGA
1 GATGA
72543646 TTAGAAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.35, C:0.00, G:0.47, T:0.18
Consensus pattern (15 bp):
GATGAAGGAGTGAGG
Found at i:72546708 original size:6 final size:6
Alignment explanation
Indices: 72546697--72546722 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
72546687 GTGGTGCAAA
72546697 CTGATG CTGATG CTGATG CTGATG CT
1 CTGATG CTGATG CTGATG CTGATG CT
72546723 TCTGTGAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.19, G:0.31, T:0.35
Consensus pattern (6 bp):
CTGATG
Found at i:72547550 original size:16 final size:16
Alignment explanation
Indices: 72547529--72547559 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
72547519 ACAACCACCG
72547529 ACCTCACATCCATACA
1 ACCTCACATCCATACA
72547545 ACCTCACATCCATAC
1 ACCTCACATCCATAC
72547560 TAATGGTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.45, G:0.00, T:0.19
Consensus pattern (16 bp):
ACCTCACATCCATACA
Found at i:72548632 original size:17 final size:16
Alignment explanation
Indices: 72548594--72548625 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
72548584 GATCTAAAGA
72548594 ATAAAAGAAAAGAAAC
1 ATAAAAGAAAAGAAAC
72548610 ATAAAAGTAAAAGAAA
1 ATAAAAG-AAAAGAAA
72548626 ATGAAAACAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.75, C:0.03, G:0.12, T:0.09
Consensus pattern (16 bp):
ATAAAAGAAAAGAAAC
Found at i:72552963 original size:2 final size:2
Alignment explanation
Indices: 72552956--72552982 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
72552946 TTGATATGTT
72552956 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
72552983 TAAAATAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:72558636 original size:46 final size:46
Alignment explanation
Indices: 72558586--72558758 Score: 301
Period size: 46 Copynumber: 3.8 Consensus size: 46
72558576 GTTGAGCATT
72558586 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
72558632 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* *
72558678 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * *
72558724 CGAGCTCGTTGAGTTGAGTCCGAATTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72558759 GCGGGTTACA
Statistics
Matches: 122, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 122 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.31
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:72566032 original size:46 final size:46
Alignment explanation
Indices: 72565982--72566157 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
72565972 TGGTTGAGCA
72565982 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72566028 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
**
72566073 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72566121 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72566158 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72566138 original size:93 final size:93
Alignment explanation
Indices: 72565979--72566150 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
72565969 GGATGGTTGA
***
72565979 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
72566044 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
72566072 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
72566137 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
72566151 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72572249 original size:23 final size:23
Alignment explanation
Indices: 72572219--72572278 Score: 111
Period size: 23 Copynumber: 2.6 Consensus size: 23
72572209 GTTTAAACCT
*
72572219 CACACGCCCATGTGGAGGCAATG
1 CACACGCCCGTGTGGAGGCAATG
72572242 CACACGCCCGTGTGGAGGCAATG
1 CACACGCCCGTGTGGAGGCAATG
72572265 CACACGCCCGTGTG
1 CACACGCCCGTGTG
72572279 CATTGGGACA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.22, C:0.33, G:0.32, T:0.13
Consensus pattern (23 bp):
CACACGCCCGTGTGGAGGCAATG
Found at i:72573818 original size:43 final size:43
Alignment explanation
Indices: 72573752--72573835 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
72573742 TACATGAATC
* *
72573752 GCATCCATTATGAACTCGAACCTCTCAATGAGCTCGGATGCTT
1 GCATCCATAATGAACTCGAACCTCTCAACGAGCTCGGATGCTT
* *
72573795 GCATCCATAATGAACTTGGACCTCTCAACGAGCTCGGATGC
1 GCATCCATAATGAACTCGAACCTCTCAACGAGCTCGGATGC
72573836 CACATATCTC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (43 bp):
GCATCCATAATGAACTCGAACCTCTCAACGAGCTCGGATGCTT
Found at i:72581328 original size:15 final size:16
Alignment explanation
Indices: 72581303--72581332 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
72581293 AGAAAAACAA
72581303 GAAGAAAAAGAAAAAG
1 GAAGAAAAAGAAAAAG
72581319 GAAG-AAAAGAAAAA
1 GAAGAAAAAGAAAAA
72581333 AAATGGCAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (16 bp):
GAAGAAAAAGAAAAAG
Found at i:72581333 original size:16 final size:16
Alignment explanation
Indices: 72581292--72581334 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
72581282 TGCCCAAATG
72581292 AAGAAAAACAAGAAGAA
1 AAGAAAAA-AAGAAGAA
*
72581309 AA-AGAAAAAGGAAGAA
1 AAGA-AAAAAAGAAGAA
72581325 AAGAAAAAAA
1 AAGAAAAAAA
72581335 ATGGCAGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (16 bp):
AAGAAAAAAAGAAGAA
Found at i:72589347 original size:17 final size:16
Alignment explanation
Indices: 72589321--72589370 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
72589311 ATTAGAATTG
72589321 AATTGAGAAAATTATTT
1 AATTGAG-AAATTATTT
* *
72589338 AATTGGGAAATTGTTT
1 AATTGAGAAATTATTT
72589354 AATT-A-AAATTAATTT
1 AATTGAGAAATT-ATTT
72589369 AA
1 AA
72589371 GATGTTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 5 0.18
15 5 0.18
16 12 0.43
17 6 0.21
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.42
Consensus pattern (16 bp):
AATTGAGAAATTATTT
Found at i:72591527 original size:20 final size:21
Alignment explanation
Indices: 72591499--72591549 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
72591489 ATAAAATTTA
72591499 ATTAGAATATATAAACTAT-ACT
1 ATTA-AATATATAAA-TATAACT
*
72591521 -TTAAATATTTAAATATAACT
1 ATTAAATATATAAATATAACT
72591541 ATTAAATAT
1 ATTAAATAT
72591550 TTATAATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 3 0.12
20 12 0.46
21 11 0.42
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41
Consensus pattern (21 bp):
ATTAAATATATAAATATAACT
Found at i:72591566 original size:21 final size:21
Alignment explanation
Indices: 72591499--72591552 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
72591489 ATAAAATTTA
*
72591499 ATTAGAATATATAAACTAT-ACT
1 ATTA-AATATTTAAA-TATAACT
72591521 -TTAAATATTTAAATATAACT
1 ATTAAATATTTAAATATAACT
72591541 ATTAAATATTTA
1 ATTAAATATTTA
72591553 TAATTAGATA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 3 0.10
20 12 0.41
21 14 0.48
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.43
Consensus pattern (21 bp):
ATTAAATATTTAAATATAACT
Found at i:72592818 original size:18 final size:18
Alignment explanation
Indices: 72592795--72592831 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
72592785 GATTTTATTG
72592795 ATGCATTAGTAATCGGAT
1 ATGCATTAGTAATCGGAT
72592813 ATGCATTAGTAATCGGAT
1 ATGCATTAGTAATCGGAT
72592831 A
1 A
72592832 CCCTTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (18 bp):
ATGCATTAGTAATCGGAT
Found at i:72593249 original size:19 final size:20
Alignment explanation
Indices: 72593216--72593262 Score: 87
Period size: 19 Copynumber: 2.4 Consensus size: 20
72593206 CAGTAAAATG
72593216 TTTTCTGGAAAATGATTTAC
1 TTTTCTGGAAAATGATTTAC
72593236 TTTTCTGG-AAATGATTTAC
1 TTTTCTGGAAAATGATTTAC
72593255 TTTTCTGG
1 TTTTCTGG
72593263 TATTTGAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 19 0.70
20 8 0.30
ACGTcount: A:0.23, C:0.11, G:0.17, T:0.49
Consensus pattern (20 bp):
TTTTCTGGAAAATGATTTAC
Found at i:72593367 original size:20 final size:20
Alignment explanation
Indices: 72593342--72593381 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
72593332 CTGTTTTTAC
72593342 ATATATTAATAAACTTATAT
1 ATATATTAATAAACTTATAT
*
72593362 ATATATTAATAAATTTATAT
1 ATATATTAATAAACTTATAT
72593382 TTTAAATTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
ATATATTAATAAACTTATAT
Found at i:72594649 original size:32 final size:32
Alignment explanation
Indices: 72594603--72594695 Score: 168
Period size: 32 Copynumber: 2.9 Consensus size: 32
72594593 TGTCAATCAT
* *
72594603 TTCAATATCCAACAAGTTTAAAACATAATAAA
1 TTCAATATCTAACAAGCTTAAAACATAATAAA
72594635 TTCAATATCTAACAAGCTTAAAACATAATAAA
1 TTCAATATCTAACAAGCTTAAAACATAATAAA
72594667 TTCAATATCTAACAAGCTTAAAACATAAT
1 TTCAATATCTAACAAGCTTAAAACATAAT
72594696 CAATATCTAA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 59 1.00
ACGTcount: A:0.52, C:0.16, G:0.03, T:0.29
Consensus pattern (32 bp):
TTCAATATCTAACAAGCTTAAAACATAATAAA
Found at i:72594722 original size:27 final size:27
Alignment explanation
Indices: 72594604--72594708 Score: 102
Period size: 32 Copynumber: 3.5 Consensus size: 27
72594594 GTCAATCATT
* *
72594604 TCAATATCCAACAAGTTTAAAACATAATAAA
1 TCAATATCTAACAAGCTTAAAAC---AT-AA
72594635 TTCAATATCTAACAAGCTTAAAACATAATAAA
1 -TCAATATCTAACAAGCTTAAAAC---AT-AA
72594667 TTCAATATCTAACAAGCTTAAAACATAA
1 -TCAATATCTAACAAGCTTAAAACATAA
72594695 TCAATATCTAACAA
1 TCAATATCTAACAA
72594709 ATCTAAGACA
Statistics
Matches: 71, Mismatches: 2, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
27 14 0.20
28 2 0.03
29 2 0.03
32 53 0.75
ACGTcount: A:0.52, C:0.17, G:0.03, T:0.28
Consensus pattern (27 bp):
TCAATATCTAACAAGCTTAAAACATAA
Found at i:72594730 original size:59 final size:62
Alignment explanation
Indices: 72594601--72594740 Score: 171
Period size: 59 Copynumber: 2.3 Consensus size: 62
72594591 ATTGTCAATC
*
72594601 ATTTCAATATCCAACAAGTTTAAAACATAATAAATTCAATATCTAACAAGCTTAAAACATAATA
1 ATTTCAATATCCAACAAGCTTAAAAC--AATAAATTCAATATCTAACAAGCTTAAAACATAATA
* * * *
72594665 AATTCAATATCTAACAAGCTTAAAAC-AT-AA-TCAATATCTAACAA-ATCTAAGACATAATA
1 ATTTCAATATCCAACAAGCTTAAAACAATAAATTCAATATCTAACAAGCT-TAAAACATAATA
*
72594724 ATTTCAAAATCCAACAA
1 ATTTCAATATCCAACAA
72594741 ACTAAAATTT
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
58 1 0.01
59 39 0.58
60 2 0.03
61 2 0.03
64 23 0.34
ACGTcount: A:0.52, C:0.17, G:0.03, T:0.28
Consensus pattern (62 bp):
ATTTCAATATCCAACAAGCTTAAAACAATAAATTCAATATCTAACAAGCTTAAAACATAATA
Found at i:72596610 original size:21 final size:21
Alignment explanation
Indices: 72596586--72596630 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
72596576 TCTTAATTAT
* **
72596586 TTTAAATTTTAAAATTAAATA
1 TTTAAATTGTAAAAAAAAATA
72596607 TTTAAATTGTAAAAAAAAATA
1 TTTAAATTGTAAAAAAAAATA
72596628 TTT
1 TTT
72596631 TATTATATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (21 bp):
TTTAAATTGTAAAAAAAAATA
Found at i:72598841 original size:27 final size:26
Alignment explanation
Indices: 72598811--72598987 Score: 158
Period size: 27 Copynumber: 6.5 Consensus size: 26
72598801 AAATTGTACA
* *
72598811 GCACTAAGGGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTG
* *
72598838 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCG-ATTGACTATG-TG
* *
72598865 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTG
72598892 GCACTAAGTGTGCGAGTTTGACTATGTG
1 GCACTAAGTGTGCGA--TTGACTATGTG
* * *
72598920 GCACTAAGTGTGCAATTTGATTATGTA
1 GCACTAAGTGTGCGA-TTGACTATGTG
* * *
72598947 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTG
*
72598974 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
72598988 GACTCGATAT
Statistics
Matches: 129, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.79
28 26 0.20
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTG
Found at i:72598925 original size:82 final size:81
Alignment explanation
Indices: 72598811--72598966 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
72598801 AAATTGTACA
*
72598811 GCACTAAGGGTGCGATTCGACTATGTTGCACTAAGTGTGCGAA-ATGAATATG-ATGCACTAAGT
1 GCACTAAGGGTGCGATTCGACTATGTGGCACTAAGTGTGC-AATATGAATATGTA-GCACTAAGT
72598874 GTGCGAATTGACCATGCG
64 GTGCGAATTGACCATGCG
* * * *
72598892 GCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCAATTTGATTATGTAGCACTAAGTG
1 GCACTAAGGGTGCGA-TTCGACTATGTGGCACTAAGTGTGCAATATGAATATGTAGCACTAAGTG
*
72598957 TGCGAGTTGA
65 TGCGAATTGA
72598967 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 16 0.24
82 49 0.74
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGGGTGCGATTCGACTATGTGGCACTAAGTGTGCAATATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72598978 original size:82 final size:81
Alignment explanation
Indices: 72598807--72598987 Score: 213
Period size: 82 Copynumber: 2.2 Consensus size: 81
72598797 GATTAAATTG
* *
72598807 TACAGCACTAAGGGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
72598872 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * * *
72598888 TGCGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGC-AATTTGATTATG-TAGCAC
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAA-ATGAATATGAT-GCAC
* **
72598951 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
72598970 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72598988 GACTCGATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 19 0.23
82 64 0.77
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72611083 original size:14 final size:17
Alignment explanation
Indices: 72611045--72611081 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
72611035 GATGAAGAAA
72611045 GAGAAGGACGGAAGGAG
1 GAGAAGGACGGAAGGAG
72611062 GAGAAGGACGGAAGGAG
1 GAGAAGGACGGAAGGAG
72611079 GAG
1 GAG
72611082 GAAAGACGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.41, C:0.05, G:0.54, T:0.00
Consensus pattern (17 bp):
GAGAAGGACGGAAGGAG
Found at i:72613354 original size:25 final size:22
Alignment explanation
Indices: 72613315--72613371 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 22
72613305 ATAAAAAATA
72613315 CTAAAAACATTAAAATAAATGTTT
1 CTAAAAA-ATTAAAATAAAT-TTT
72613339 CCTAAAAAATTGAAAATAAATTTT
1 -CTAAAAAATT-AAAATAAATTTT
*
72613363 TTAAAAAAT
1 CTAAAAAAT
72613372 ATGTATACTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 8 0.27
24 6 0.20
25 16 0.53
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (22 bp):
CTAAAAAATTAAAATAAATTTT
Found at i:72614833 original size:26 final size:26
Alignment explanation
Indices: 72614804--72614857 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
72614794 TTTATATTAG
* *
72614804 TATTTATATATTTAAATAAATTAAAA
1 TATTTATAAAATTAAATAAATTAAAA
* * *
72614830 TATTTTTAAAATTAATTAATTTAAAA
1 TATTTATAAAATTAAATAAATTAAAA
72614856 TA
1 TA
72614858 CTAGCAAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
TATTTATAAAATTAAATAAATTAAAA
Found at i:72615478 original size:18 final size:18
Alignment explanation
Indices: 72615441--72615478 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
72615431 TCATTATTGA
*
72615441 TTTTATTATTTTAAATAT
1 TTTTATTATTTTAAAGAT
72615459 TTTTATTA-TTTATAAGAT
1 TTTTATTATTTTA-AAGAT
72615477 TT
1 TT
72615479 ATCACATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (18 bp):
TTTTATTATTTTAAAGAT
Found at i:72618732 original size:29 final size:30
Alignment explanation
Indices: 72618686--72618744 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
72618676 TTCCCGAGCC
*
72618686 TAGGGGTAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* *
72618716 TAGGGGCAAAA-TGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
72618745 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:72620968 original size:21 final size:21
Alignment explanation
Indices: 72620927--72620968 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
72620917 TCCCCCACCT
*
72620927 CCCCCGATTCCTCAACCTGTA
1 CCCCCGATTCCTCAAACTGTA
*
72620948 CCCCCGATGT-CTCAAAGTGTA
1 CCCCCGAT-TCCTCAAACTGTA
72620969 GATCTGATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.21, C:0.40, G:0.14, T:0.24
Consensus pattern (21 bp):
CCCCCGATTCCTCAAACTGTA
Done.