Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 219 of 344
Found at i:72626666 original size:48 final size:48
Alignment explanation
Indices: 72626512--72626659 Score: 233
Period size: 48 Copynumber: 3.1 Consensus size: 48
72626502 ATATATACAC
* **
72626512 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
**
72626560 GGCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* *
72626608 ATCTCATACATATTTTACATTAGCCAATCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
72626656 ATCT
1 ATCT
72626660 TGTACATCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 91 1.00
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:72628138 original size:23 final size:23
Alignment explanation
Indices: 72628106--72628149 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
72628096 AAAATTTCAC
* *
72628106 ACATGTAATTTCACATATAATAG
1 ACATGAAATTTAACATATAATAG
*
72628129 ACATGAAATTTAACATTTAAT
1 ACATGAAATTTAACATATAAT
72628150 TATTTTTACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (23 bp):
ACATGAAATTTAACATATAATAG
Found at i:72633326 original size:46 final size:44
Alignment explanation
Indices: 72633211--72633467 Score: 186
Period size: 46 Copynumber: 5.7 Consensus size: 44
72633201 GGTAAGGTGG
* * *
72633211 CGATGCTATGTCCCAGACATGGTCTTACACCGATCAT-ATCTC-AGT
1 CGATGC-ATGTCCCAGACAT-GTCTTACACTGA-CTTCATCTCGAGC
*
72633256 CG-TGCCATGT-CCAGACATGGCTTACACTGACTATCATCTCGTAGC
1 CGATG-CATGTCCCAGACATGTCTTACACTGACT-TCATCTCG-AGC
* *
72633301 CGATGCATGTCCCAGACATATCTTACACTGGCTTACGA-CTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGACTT-C-ATCTCGA-GC
* * * ** *
72633347 CGATGCATGTCCTAAACATTTCTTACACT-AGCTCTTGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGA-CT-TCATCTCGA-GC
* * *
72633393 CGATGCATGTCCCAGACATGGTCTTACACTGGCTTCATAAT-GTGGC
1 CGATGCATGTCCCAGACAT-GTCTTACACTGACTTCAT-CTCG-AGC
*
72633439 CGATGCATGTCCTAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
72633468 AGCCAACAAT
Statistics
Matches: 170, Mismatches: 25, Indels: 34
0.74 0.11 0.15
Matches are distributed among these distances:
41 1 0.01
42 11 0.06
43 13 0.08
44 6 0.04
45 24 0.14
46 101 0.59
47 14 0.08
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGTCTTACACTGACTTCATCTCGAGC
Found at i:72633395 original size:92 final size:92
Alignment explanation
Indices: 72633299--72633470 Score: 258
Period size: 92 Copynumber: 1.9 Consensus size: 92
72633289 TCATCTCGTA
*
72633299 GCCGATGCATGTCCCAGACAT-ATCTTACACTGGCTT-ACGACTCGAGGCCGATGCATGTCCTAA
1 GCCGATGCATGTCCCAGACATGATCTTACACTGGCTTCA-GAAT-GAGGCCGATGCATGTCCTAA
*
72633362 ACATTTCTTACACTAGCTCTTGTCTCAAT
64 ACATGTCTTACACTAGCTCTTGTCTCAAT
* * * *
72633391 GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTTCATAATGTGGCCGATGCATGTCCTAGAC
1 GCCGATGCATGTCCCAGACATGATCTTACACTGGCTTCAGAATGAGGCCGATGCATGTCCTAAAC
72633456 ATGTCTTACACTAGC
66 ATGTCTTACACTAGC
72633471 CAACAATAAC
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
92 55 0.76
93 16 0.22
94 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGATCTTACACTGGCTTCAGAATGAGGCCGATGCATGTCCTAAAC
ATGTCTTACACTAGCTCTTGTCTCAAT
Found at i:72646195 original size:45 final size:46
Alignment explanation
Indices: 72646135--72646322 Score: 238
Period size: 45 Copynumber: 4.1 Consensus size: 46
72646125 AATATATATT
* * * *
72646135 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACA-TGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
72646182 CCAC-TGGCCATTCGGCCTTATCACA-ATATGCATGCTCACATTCA
1 TCACATGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
72646226 TCACATTGCCATTC-GCCTTATCACATATATGCATGTTCACATTCA
1 TCACATGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
72646271 TCACATGGCCATTCAGCCTTATCTCATATATACACATTCACATTCA
1 TCACATGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
72646317 TCACAT
1 TCACAT
72646323 AAAATCCTAA
Statistics
Matches: 124, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
44 31 0.25
45 57 0.46
46 33 0.27
47 3 0.02
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (46 bp):
TCACATGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:72646233 original size:91 final size:91
Alignment explanation
Indices: 72646135--72646322 Score: 254
Period size: 89 Copynumber: 2.1 Consensus size: 91
72646125 AATATATATT
* * *
72646135 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCACCAC-TGGCCATTCGGCC
1 TCACATTG-CCATTC-GCCTTACCACATATATGCATGTTCACATTCACCACATGGCCATTCAGCC
* **
72646199 TTATCACA-ATATGCATGCTCACATTCA
64 TTATCACATATATACACACTCACATTCA
* *
72646226 TCACATTGCCATTCGCCTTATCACATATATGCATGTTCACATTCATCACATGGCCATTCAGCCTT
1 TCACATTGCCATTCGCCTTACCACATATATGCATGTTCACATTCACCACATGGCCATTCAGCCTT
* *
72646291 ATCTCATATATACACATTCACATTCA
66 ATCACATATATACACACTCACATTCA
72646317 TCACAT
1 TCACAT
72646323 AAAATCCTAA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
89 31 0.36
90 25 0.29
91 29 0.34
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (91 bp):
TCACATTGCCATTCGCCTTACCACATATATGCATGTTCACATTCACCACATGGCCATTCAGCCTT
ATCACATATATACACACTCACATTCA
Found at i:72658843 original size:48 final size:48
Alignment explanation
Indices: 72658689--72658836 Score: 233
Period size: 48 Copynumber: 3.1 Consensus size: 48
72658679 ATATATACAC
* **
72658689 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
**
72658737 GGCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* *
72658785 ATCTCATACATATTTTACATTAGCCAATCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
72658833 ATCT
1 ATCT
72658837 TGTACATCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 91 1.00
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:72660317 original size:23 final size:23
Alignment explanation
Indices: 72660285--72660328 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
72660275 AAAATTTCAC
* *
72660285 ACATGTAATTTCACATATAATAG
1 ACATGAAATTTAACATATAATAG
*
72660308 ACATGAAATTTAACATTTAAT
1 ACATGAAATTTAACATATAAT
72660329 TATTTTTACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (23 bp):
ACATGAAATTTAACATATAATAG
Found at i:72665544 original size:47 final size:45
Alignment explanation
Indices: 72665455--72665718 Score: 185
Period size: 47 Copynumber: 5.6 Consensus size: 45
72665445 GGTAAGGTGG
* * *
72665455 CGATGCTATGTCCCAGACATGGTCTTACACCGATTCAT-ATCTCAAGT
1 CGATGC-ATGTCCCAGACAT-GTCTTACACTGACT-ATCATCTCAAGC
* *
72665502 CGATGCCATGTCCTAGACATGGTCTTACACTGACTATCATCTCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACTATCATCTC-AAGC
* * *
72665550 CGATGCATGTCCCAGACATATCTTACACTGGCT-TACGA-CTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGACTAT-C-ATCTC-AAGC
* * * * **
72665596 CGATGCATGTCCTAAACATTTCTTACACT-AGCTCTTGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGA-CTATCATCTCAA-GC
* * * ***
72665642 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACTATCAT-CTCAAGC
*
72665690 CGATGCATGTCCTAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
72665719 AGCCAACAAT
Statistics
Matches: 176, Mismatches: 28, Indels: 27
0.76 0.12 0.12
Matches are distributed among these distances:
45 2 0.01
46 69 0.39
47 75 0.43
48 29 0.16
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGACTATCATCTCAAGC
Found at i:72665598 original size:46 final size:46
Alignment explanation
Indices: 72665502--72665718 Score: 190
Period size: 46 Copynumber: 4.6 Consensus size: 46
72665492 TATCTCAAGT
* * *
72665502 CGATGCCATGTCCTAGACATGGTCTTACACTGACTATC-ATCTCGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCGA-CTCG-AGGC
*
72665550 CGATGCATGTCCCAGACATATCTTACACTGGCT-TACGACTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGACTCGAGGC
* * * * * * * *
72665596 CGATGCATGTCCTAAACATTTCTTACACTAGCTCTTGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGACTCGAGGC
* * *
72665642 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTC-GACTCGAGGC
*
72665690 CGATGCATGTCCTAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
72665719 AGCCAACAAT
Statistics
Matches: 139, Mismatches: 23, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
45 2 0.01
46 70 0.50
47 40 0.29
48 26 0.19
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGACTCGAGGC
Found at i:72665691 original size:94 final size:92
Alignment explanation
Indices: 72665548--72665721 Score: 244
Period size: 94 Copynumber: 1.9 Consensus size: 92
72665538 TCATCTCGTA
*
72665548 GCCGATGCATGTCCCAGACATATCTTACACTGGCTTACGACTCGAGGCCGATGCATGTCCTAAAC
1 GCCGATGCATGTCCCAGACATATCTTACACTGGCTTACGAATCGAGGCCGATGCATGTCCTAAAC
*
72665613 ATTTCTTACACTAGCTCTTGTCTCAAT
66 ATGTCTTACACTAGCTCTTGTCTCAAT
* * *
72665640 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCCT
1 GCCGATG-CATGTCCCAGACAT-ATCTTACACTGGCT-TAC-GAATCGAGGCCGATGCATGTCCT
*
72665703 AGACATGTCTTACACTAGC
62 AAACATGTCTTACACTAGC
72665722 CAACAATAAC
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
92 7 0.10
93 14 0.19
94 48 0.67
95 3 0.04
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATATCTTACACTGGCTTACGAATCGAGGCCGATGCATGTCCTAAAC
ATGTCTTACACTAGCTCTTGTCTCAAT
Found at i:72671390 original size:18 final size:18
Alignment explanation
Indices: 72671367--72671403 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
72671357 TATCGTAACT
72671367 TAGAAAGTAATTAAGAAA
1 TAGAAAGTAATTAAGAAA
72671385 TAGAAAGTAATTAAGAAA
1 TAGAAAGTAATTAAGAAA
72671403 T
1 T
72671404 TAATTATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.24
Consensus pattern (18 bp):
TAGAAAGTAATTAAGAAA
Found at i:72688693 original size:46 final size:48
Alignment explanation
Indices: 72688641--72688950 Score: 206
Period size: 47 Copynumber: 6.6 Consensus size: 48
72688631 TTTGTGTACT
* *
72688641 AGTGTAAGA-CATGTTTAGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* *
72688687 AGTGTAAGACCATGTCTGGGACATGGCATCGG---CATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT---ATGAGAGCC
* * * *
72688735 AGTATAAGA-CATGTCTGGGATAT-TCATCGGCCTC-TTGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT-ATG-AGAGCC
* * * * * *
72688781 AGTGTAAGA-CATGTTTGGGACAT-GCATCAGCTACATGAT--GTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* * * *
72688825 TGTATAAGACCATGTCTGGGACATGGCATC-GCAACAAATATGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC--CACAT-TATGAGAGCC
* *
72688875 AGTGTAAGACCATGTCTAGGACATGGCATC-G--AC-TTAACGTGAGATCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT-A--TGAGAGCC
*
72688922 AGTGTAAGACCATGTCTGGTACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
72688951 TGGCATTATA
Statistics
Matches: 207, Mismatches: 36, Indels: 41
0.73 0.13 0.14
Matches are distributed among these distances:
44 10 0.05
45 20 0.10
46 56 0.27
47 64 0.31
48 25 0.12
49 1 0.00
50 31 0.15
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
Found at i:72698184 original size:515 final size:515
Alignment explanation
Indices: 72697213--72698241 Score: 2058
Period size: 515 Copynumber: 2.0 Consensus size: 515
72697203 ATTCCACACG
72697213 AGTAAAGGACATGGGCGTGCCCCCTATATGCTTAGTCTATGTGAGCCACACAGGGCAACAACACG
1 AGTAAAGGACATGGGCGTGCCCCCTATATGCTTAGTCTATGTGAGCCACACAGGGCAACAACACG
72697278 ACCATGTTGAATTGGTCACACGGGCGTGTTGCCCCTCCCACACGAGCGTGTGCCGTTGTGTCTAG
66 ACCATGTTGAATTGGTCACACGGGCGTGTTGCCCCTCCCACACGAGCGTGTGCCGTTGTGTCTAG
72697343 TGTTATTTTTTAGAGTCCGTTGGAAGACCCGAATTGGTCCCGATTGGTTTTTATATGAATGTTTG
131 TGTTATTTTTTAGAGTCCGTTGGAAGACCCGAATTGGTCCCGATTGGTTTTTATATGAATGTTTG
72697408 GAGACTCGTAGGCCATATTAAAGAAGTTTAGACAAAGTTTTAAGTTTGACCAGGTCTTGATGATT
196 GAGACTCGTAGGCCATATTAAAGAAGTTTAGACAAAGTTTTAAGTTTGACCAGGTCTTGATGATT
72697473 CAGAAACATAGGAATGCATGTGTTCAAGGTAGGTAACACCTCGTATTCCATCCCGGTGTAGGGTA
261 CAGAAACATAGGAATGCATGTGTTCAAGGTAGGTAACACCTCGTATTCCATCCCGGTGTAGGGTA
72697538 CGGGTGTAGGGTATTATAGGGACCAATTGGACATTGACAATTAGGCTCTAGTGATTGCAATTATG
326 CGGGTGTAGGGTATTATAGGGACCAATTGGACATTGACAATTAGGCTCTAGTGATTGCAATTATG
72697603 TCAAGAAGCATTGTTCTGATAATTCGTAATTACTTAATTATGGAGTCAATCCACAAGAAGTACTA
391 TCAAGAAGCATTGTTCTGATAATTCGTAATTACTTAATTATGGAGTCAATCCACAAGAAGTACTA
72697668 TGATTGAAAACTCCTTATTGTATACTATTTACGAAAGCAATTAATCCAATTGTTTTGTCT
456 TGATTGAAAACTCCTTATTGTATACTATTTACGAAAGCAATTAATCCAATTGTTTTGTCT
72697728 AGTAAAGGACATGGGCGTGCCCCCTATATGCTTAGTCTATGTGAGCCACACAGGGCAACAACACG
1 AGTAAAGGACATGGGCGTGCCCCCTATATGCTTAGTCTATGTGAGCCACACAGGGCAACAACACG
72697793 ACCATGTTGAATTGGTCACACGGGCGTGTTGCCCCTCCCACACGAGCGTGTGCCGTTGTGTCTAG
66 ACCATGTTGAATTGGTCACACGGGCGTGTTGCCCCTCCCACACGAGCGTGTGCCGTTGTGTCTAG
72697858 TGTTATTTTTTAGAGTCCGTTGGAAGACCCGAATTGGTCCCGATTGGTTTTTATATGAATGTTTG
131 TGTTATTTTTTAGAGTCCGTTGGAAGACCCGAATTGGTCCCGATTGGTTTTTATATGAATGTTTG
72697923 GAGACTCGTAGGCCATATTAAAGAAGTTTAGACAAAGTTTTAAGTTTGACCAGGTCTTGATGATT
196 GAGACTCGTAGGCCATATTAAAGAAGTTTAGACAAAGTTTTAAGTTTGACCAGGTCTTGATGATT
72697988 CAGAAACATAGGAATGCATGTGTTCAAGGTAGGTAACACCTCGTATTCCATCCCGGTGTAGGGTA
261 CAGAAACATAGGAATGCATGTGTTCAAGGTAGGTAACACCTCGTATTCCATCCCGGTGTAGGGTA
72698053 CGGGTGTAGGGTATTATAGGGACCAATTGGACATTGACAATTAGGCTCTAGTGATTGCAATTATG
326 CGGGTGTAGGGTATTATAGGGACCAATTGGACATTGACAATTAGGCTCTAGTGATTGCAATTATG
72698118 TCAAGAAGCATTGTTCTGATAATTCGTAATTACTTAATTATGGAGTCAATCCACAAGAAGTACTA
391 TCAAGAAGCATTGTTCTGATAATTCGTAATTACTTAATTATGGAGTCAATCCACAAGAAGTACTA
72698183 TGATTGAAAACTCCTTATTGTATACTATTTACGAAAGCAATTAATCCAATTGTTTTGTC
456 TGATTGAAAACTCCTTATTGTATACTATTTACGAAAGCAATTAATCCAATTGTTTTGTC
72698242 CAATAACCTT
Statistics
Matches: 514, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
515 514 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (515 bp):
AGTAAAGGACATGGGCGTGCCCCCTATATGCTTAGTCTATGTGAGCCACACAGGGCAACAACACG
ACCATGTTGAATTGGTCACACGGGCGTGTTGCCCCTCCCACACGAGCGTGTGCCGTTGTGTCTAG
TGTTATTTTTTAGAGTCCGTTGGAAGACCCGAATTGGTCCCGATTGGTTTTTATATGAATGTTTG
GAGACTCGTAGGCCATATTAAAGAAGTTTAGACAAAGTTTTAAGTTTGACCAGGTCTTGATGATT
CAGAAACATAGGAATGCATGTGTTCAAGGTAGGTAACACCTCGTATTCCATCCCGGTGTAGGGTA
CGGGTGTAGGGTATTATAGGGACCAATTGGACATTGACAATTAGGCTCTAGTGATTGCAATTATG
TCAAGAAGCATTGTTCTGATAATTCGTAATTACTTAATTATGGAGTCAATCCACAAGAAGTACTA
TGATTGAAAACTCCTTATTGTATACTATTTACGAAAGCAATTAATCCAATTGTTTTGTCT
Found at i:72709625 original size:6 final size:6
Alignment explanation
Indices: 72709608--72709681 Score: 103
Period size: 6 Copynumber: 11.8 Consensus size: 6
72709598 TTTTAAGGTT
*
72709608 ATTTTC ATTTTTC ATTTTTC ATTTTC ATTTTC ATTTTTC ATTTTC GTTTTC
1 ATTTTC A-TTTTC A-TTTTC ATTTTC ATTTTC A-TTTTC ATTTTC ATTTTC
*
72709659 GTTTTC ATTTTC ATTTTC ATTTT
1 ATTTTC ATTTTC ATTTTC ATTTT
72709682 AGAGAAAACC
Statistics
Matches: 64, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
6 45 0.70
7 19 0.30
ACGTcount: A:0.14, C:0.15, G:0.03, T:0.69
Consensus pattern (6 bp):
ATTTTC
Found at i:72733529 original size:12 final size:12
Alignment explanation
Indices: 72733514--72733557 Score: 79
Period size: 12 Copynumber: 3.7 Consensus size: 12
72733504 CCTCTAATTT
72733514 TACTTCTACATC
1 TACTTCTACATC
*
72733526 TACTACTACATC
1 TACTTCTACATC
72733538 TACTTCTACATC
1 TACTTCTACATC
72733550 TACTTCTA
1 TACTTCTA
72733558 TGTTAATTGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.27, C:0.32, G:0.00, T:0.41
Consensus pattern (12 bp):
TACTTCTACATC
Found at i:72734217 original size:15 final size:15
Alignment explanation
Indices: 72734197--72734258 Score: 61
Period size: 15 Copynumber: 3.9 Consensus size: 15
72734187 TCGACAAGGT
72734197 AAATAAAAATATTAA
1 AAATAAAAATATTAA
72734212 AAATAAAAATATTTAA
1 AAATAAAAATA-TTAA
* * *
72734228 TTAACTAAAAAAATTCA
1 --AAATAAAAATATTAA
72734245 AAATAAGAAATATT
1 AAATAA-AAATATT
72734259 TAATTATGTA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
15 16 0.42
16 10 0.26
17 3 0.08
18 9 0.24
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (15 bp):
AAATAAAAATATTAA
Found at i:72734239 original size:34 final size:35
Alignment explanation
Indices: 72734201--72734275 Score: 109
Period size: 34 Copynumber: 2.2 Consensus size: 35
72734191 CAAGGTAAAT
72734201 AAAAATATTAAAAATAA-AAATATTTAATTAACTA
1 AAAAATATTAAAAATAAGAAATATTTAATTAACTA
* **
72734235 AAAAA-ATTCAAAATAAGAAATATTTAATTATGTA
1 AAAAATATTAAAAATAAGAAATATTTAATTAACTA
72734269 AAAAATA
1 AAAAATA
72734276 AAATTAGAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
33 10 0.28
34 25 0.69
35 1 0.03
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (35 bp):
AAAAATATTAAAAATAAGAAATATTTAATTAACTA
Found at i:72739268 original size:67 final size:67
Alignment explanation
Indices: 72739160--72739293 Score: 232
Period size: 67 Copynumber: 2.0 Consensus size: 67
72739150 TTGCCAGCAA
* *
72739160 CAATTATCAATGGCCAACCAATCAAGCAGTGCCAGGAAGAGGAGTCGCTAGAATACATGAAGTAG
1 CAATTATCAATGGCCAACCAATCAAGCAGTGCAAGGAAGAGGAGTCACTAGAATACATGAAGTAG
72739225 AT
66 AT
* *
72739227 CAATTATCAATGGCCAACCAATCAAGCAGTGGAAGGAAGAGGAGTCACTGGAATACATGAAGTAG
1 CAATTATCAATGGCCAACCAATCAAGCAGTGCAAGGAAGAGGAGTCACTAGAATACATGAAGTAG
72739292 AT
66 AT
72739294 GCTCTAAACT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 63 1.00
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.18
Consensus pattern (67 bp):
CAATTATCAATGGCCAACCAATCAAGCAGTGCAAGGAAGAGGAGTCACTAGAATACATGAAGTAG
AT
Found at i:72743624 original size:22 final size:19
Alignment explanation
Indices: 72743599--72743640 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
72743589 TGATAATCAT
72743599 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
72743621 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
72743640 T
1 T
72743641 CAACTTTCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:72744861 original size:30 final size:29
Alignment explanation
Indices: 72744826--72744882 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
72744816 TAGGCACTTC
72744826 CACACGAGT-GATCCACACGCCCGTGTGTGA
1 CACACGAGTAGA-CCACAC-CCCGTGTGTGA
*
72744856 CACACGGGTAGACCACACCCCGTGTGT
1 CACACGAGTAGACCACACCCCGTGTGT
72744883 CATGGCCGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 9 0.36
30 14 0.56
31 2 0.08
ACGTcount: A:0.23, C:0.35, G:0.26, T:0.16
Consensus pattern (29 bp):
CACACGAGTAGACCACACCCCGTGTGTGA
Found at i:72753269 original size:3 final size:3
Alignment explanation
Indices: 72753261--72753291 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
72753251 TGAGGATCCT
72753261 GAA GAA GAA GAA GAA GAA GAA GAA GAA -AA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
72753292 TCCCACTGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:72759890 original size:17 final size:17
Alignment explanation
Indices: 72759846--72759894 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
72759836 ATTCAAACAT
*
72759846 ATTTTTAAAATGAAAATA
1 ATTTATAAAAT-AAAATA
*
72759864 ATTCAT-AAATAAAATA
1 ATTTATAAAATAAAATA
72759880 ATTTATAAAATAAAA
1 ATTTATAAAATAAAA
72759895 CACAAATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 11 0.41
17 12 0.44
18 4 0.15
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (17 bp):
ATTTATAAAATAAAATA
Found at i:72762620 original size:40 final size:41
Alignment explanation
Indices: 72762536--72762631 Score: 117
Period size: 40 Copynumber: 2.4 Consensus size: 41
72762526 GACTAAGTTC
**
72762536 GGCACTAAGTGTGC-AGTTCAAAATAGCTTCGGTTACAAAT
1 GGCACTAAGTGTGCGAGTTCAAAATAGCTTCGACTACAAAT
* * *
72762576 GGCACTAAGTGTGCGAGTT-AGAATAGCTTCGACTATATGA-
1 GGCACTAAGTGTGCGAGTTCAAAATAGCTTCGACTACA-AAT
72762616 GGCACTAAGTGTGCGA
1 GGCACTAAGTGTGCGA
72762632 TACCGAGATA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 44 0.90
41 5 0.10
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (41 bp):
GGCACTAAGTGTGCGAGTTCAAAATAGCTTCGACTACAAAT
Found at i:72763750 original size:25 final size:27
Alignment explanation
Indices: 72763713--72763765 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
72763703 TCAAACAAGC
72763713 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
72763739 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
72763765 A
1 A
72763766 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:72765287 original size:32 final size:32
Alignment explanation
Indices: 72765245--72765309 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
72765235 AATGCTTACC
72765245 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
72765277 ATGCTCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
72765309 A
1 A
72765310 AATGCATACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:72770173 original size:12 final size:12
Alignment explanation
Indices: 72770156--72770186 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
72770146 AGTACTACCT
72770156 CGGCCTCGACCA
1 CGGCCTCGACCA
72770168 CGGCCTCGACCA
1 CGGCCTCGACCA
72770180 CGGCCTC
1 CGGCCTC
72770187 TTCCCTGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.52, G:0.26, T:0.10
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:72771391 original size:15 final size:15
Alignment explanation
Indices: 72771371--72771409 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
72771361 AAGTCAACTC
72771371 AAGCCCATTGGGCCT
1 AAGCCCATTGGGCCT
72771386 AAGCCCATTGGGCCT
1 AAGCCCATTGGGCCT
72771401 AAGCCCATT
1 AAGCCCATT
72771410 CAGGTAATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.21
Consensus pattern (15 bp):
AAGCCCATTGGGCCT
Found at i:72771827 original size:26 final size:26
Alignment explanation
Indices: 72771798--72771850 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
72771788 TCAAACATGC
72771798 ATTTAGATCAATTTAACT-CTAGGGGT
1 ATTTAGAT-AATTTAACTCCTAGGGGT
* * *
72771824 ATTTTGGTAATTTATCTCCTAGGGGT
1 ATTTAGATAATTTAACTCCTAGGGGT
72771850 A
1 A
72771851 AAATTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.42
Consensus pattern (26 bp):
ATTTAGATAATTTAACTCCTAGGGGT
Found at i:72773367 original size:32 final size:32
Alignment explanation
Indices: 72773330--72773394 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
72773320 AATGCTTACC
72773330 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
72773362 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
72773394 A
1 A
72773395 AATGTATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:72775380 original size:19 final size:17
Alignment explanation
Indices: 72775356--72775394 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
72775346 TACTATGCAC
72775356 AAATTTTATAAAATTGAAA
1 AAATTTTA-AAAATT-AAA
*
72775375 AAATTTTAACAATTAAA
1 AAATTTTAAAAATTAAA
72775392 AAA
1 AAA
72775395 AACAACATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 5 0.26
19 8 0.42
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (17 bp):
AAATTTTAAAAATTAAA
Found at i:72775393 original size:18 final size:19
Alignment explanation
Indices: 72775356--72775395 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
72775346 TACTATGCAC
*
72775356 AAATTTTATAAAATTGAAA
1 AAATTTTATAAAATTAAAA
*
72775375 AAATTTTA-ACAATTAAAA
1 AAATTTTATAAAATTAAAA
72775393 AAA
1 AAA
72775396 ACAACATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (19 bp):
AAATTTTATAAAATTAAAA
Found at i:72783028 original size:9 final size:9
Alignment explanation
Indices: 72783014--72783045 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
72783004 TTCTACAAAC
72783014 TATTTTATT
1 TATTTTATT
72783023 TATTTTATT
1 TATTTTATT
72783032 TATTTTATT
1 TATTTTATT
72783041 TATTT
1 TATTT
72783046 ACTTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
TATTTTATT
Found at i:72784558 original size:15 final size:15
Alignment explanation
Indices: 72784538--72784570 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
72784528 GAATAGGTGC
*
72784538 TTTATTTGTTATTTA
1 TTTATTTATTATTTA
72784553 TTTATTTATTATTTA
1 TTTATTTATTATTTA
72784568 TTT
1 TTT
72784571 GGTACTGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (15 bp):
TTTATTTATTATTTA
Found at i:72785157 original size:19 final size:19
Alignment explanation
Indices: 72785120--72785157 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
72785110 TTCATTCCAT
*
72785120 TCATATGCATTACAGTTCA
1 TCATATGCATTAAAGTTCA
*
72785139 TCATATGCATTAAATTTCA
1 TCATATGCATTAAAGTTCA
72785158 CAAAAGGACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.39
Consensus pattern (19 bp):
TCATATGCATTAAAGTTCA
Found at i:72791829 original size:44 final size:45
Alignment explanation
Indices: 72791766--72792194 Score: 168
Period size: 45 Copynumber: 9.4 Consensus size: 45
72791756 ACAGAGAATT
* * * * *
72791766 TTATCTCCTTAAAGTTGCAGTAGAGCATATTGAAGCCA-CTAATC
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGACATCAAATC
** * *
72791810 TTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGATATCAAATT
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGACATCAAATC
* * ** *
72791855 TTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAGTCACAAATC
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAG--AC-A-T--CAAATC
* * ** ** * **
72791906 -TATACT-TCTGAAATTGCAGTAGTTCAGATAAAATCTACCATGGTGAATC
1 TTAT-CTCCCTGAAGTTGCAGTAGAGCAGATTGAA--GA-CAT--CAAATC
* * * * * *
72791955 TTATCTCCCTAAAGTTGTAGTGGAACAGATTGAAGTCA-CTAATC
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGACATCAAATC
* * * ** * * *
72791999 TTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAGGTAGCCAATT
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGACATCAAATC
* * * * * *
72792044 TTATCTCCCTAAAGTTGTAGTGGAGCAAATTGAAGCCA-CTAATC
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGACATCAAATC
* * * ** * *
72792088 TTATCTCTCTAAAGTTACAGT-GAAGCAGATTGAAGGTATCCAATT
1 TTATCTCCCTGAAGTTGCAGTAG-AGCAGATTGAAGACATCAAATC
* * ** * * *
72792133 TTATCTCCTTGAAGTTGTAGCGGAGTAGATTGAAGATAGCAAATC
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGACATCAAATC
* *
72792178 TTATTTCCCTAAAGTTG
1 TTATCTCCCTGAAGTTG
72792195 TTGTGGAATA
Statistics
Matches: 290, Mismatches: 78, Indels: 33
0.72 0.19 0.08
Matches are distributed among these distances:
43 1 0.00
44 102 0.35
45 121 0.42
46 1 0.00
47 3 0.01
48 1 0.00
49 8 0.03
50 46 0.16
51 7 0.02
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31
Consensus pattern (45 bp):
TTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGACATCAAATC
Found at i:72792059 original size:89 final size:89
Alignment explanation
Indices: 72791955--72792193 Score: 345
Period size: 89 Copynumber: 2.7 Consensus size: 89
72791945 ATGGTGAATC
*
72791955 TTATCTCCCTAAAGTTGTAGTGGAACAGATTGAAGTCACTAATCTTATCTCCCTAAAGTTACAGT
1 TTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGTCACTAATCTTATCTCCCTAAAGTTACAGT
*
72792020 GGAGCAGATTGAAGGTAGCCAATT
66 GAAGCAGATTGAAGGTAGCCAATT
* * *
72792044 TTATCTCCCTAAAGTTGTAGTGGAGCAAATTGAAGCCACTAATCTTATCTCTCTAAAGTTACAGT
1 TTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGTCACTAATCTTATCTCCCTAAAGTTACAGT
*
72792109 GAAGCAGATTGAAGGTATCCAATT
66 GAAGCAGATTGAAGGTAGCCAATT
* * * * * *
72792133 TTATCTCCTTGAAGTTGTAGCGGAGTAGATTGAAGAT-AGCAAATCTTATTTCCCTAAAGTT
1 TTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAG-TCA-CTAATCTTATCTCCCTAAAGTT
72792194 GTTGTGGAAT
Statistics
Matches: 133, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
89 114 0.86
90 19 0.14
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Consensus pattern (89 bp):
TTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGTCACTAATCTTATCTCCCTAAAGTTACAGT
GAAGCAGATTGAAGGTAGCCAATT
Found at i:72792066 original size:45 final size:44
Alignment explanation
Indices: 72791951--72792201 Score: 261
Period size: 45 Copynumber: 5.6 Consensus size: 44
72791941 TACCATGGTG
* *
72791951 AATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTGAA-GTCACT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGGT-ACC
**
72791995 AATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAGGTAGCC
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGGTA-CC
* * ** *
72792040 AATTTTATCTCCCTAAAGTTGTAGTGGAGCAAATTGAAGCCACT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGGTACC
* ** *
72792084 AATCTTATCTCTCTAAAGTTACAGTGAAGCAGATTGAAGGTATCC
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGGTA-CC
* * * * * * *
72792129 AATTTTATCTCCTTGAAGTTGTAGCGGAGTAGATTGAAGATAGCA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGGTA-CC
* *
72792174 AATCTTATTTCCCTAAAGTTGTTGTGGA
1 AATCTTATCTCCCTAAAGTTGTAGTGGA
72792202 ATAGATTAAA
Statistics
Matches: 166, Mismatches: 38, Indels: 5
0.79 0.18 0.02
Matches are distributed among these distances:
44 71 0.43
45 95 0.57
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (44 bp):
AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGGTACC
Found at i:72792401 original size:323 final size:323
Alignment explanation
Indices: 72791810--72792426 Score: 871
Period size: 323 Copynumber: 1.9 Consensus size: 323
72791800 GCCACTAATC
* * *
72791810 TTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGATATCAAATTTTATTTCCCTGAAGTTGCAG
1 TTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCAG
* *
72791875 TGGAATAGATTAAAGCTACAAGTCACAAATCTATACTTCTGAAATTGCAGTAGTTCAGATAAAAT
66 TGGAATAGATTAAAGCTACAAGTCACAAATCTATACCTCTGAAATTGCAGTAGGTCAGATAAAAT
**
72791940 CTACCATGGTGAATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTGAAGTCACTAATCTTATCT
131 CTACCATGGCAAATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTGAAGTCACTAATCTTATCT
* * * ** ** *
72792005 CCCTAAAGTTACAGTGGAGCAGATTGAAGGTAGCCAATTTTATCTCCCTAAAGTTGTAGTGGAGC
196 CCCTAAAGTTACAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCCCTAAAGTTACAGTAAAAC
72792070 AAATTGAAGCCACTAATCTTATCTCTCTA-AAGTTACAGTGAAGCAGATTGAAGGTATCCAATT
261 AAATTGAAGCCACTAATCTTATCTC-CTAGAAGTTACAGTGAAGCAGATTGAAGGTATCCAATT
* * * **
72792133 TTATCTCCTTGAAGTTGTAGCGGAGTAGATTGAAGATAGCAAATCTTATTTCCCTAAAGTTGTTG
1 TTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCAG
* * * *
72792198 TGGAATAGATTAAAGCTACAAGTCACAAATCCTATACCTCTGAAGTTGTAGTAGGTCGGATCAAA
66 TGGAATAGATTAAAGCTACAAGTCACAAAT-CTATACCTCTGAAATTGCAGTAGGTCAGATAAAA
* * *
72792263 TCTACCATGGCAAATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTGAAG-CCCTAATTTTATT
130 TCTACCATGGCAAATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTGAAGTCACTAATCTTATC
* ** * **
72792327 TCCCTGAAGTTGTAGTGGAGTAGATTGAAGATAGCAAATCTTATCTCTTTGAAAG-TACAGTAAA
195 TCCCTAAAGTTACAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCCCT-AAAGTTACAGTAAA
* *
72792391 ACAGATTGAAGCTACTAATCTTATCTCCTAGAAGTT
259 ACAAATTGAAGCCACTAATCTTATCTCCTAGAAGTT
72792427 GCAGCGGAGC
Statistics
Matches: 256, Mismatches: 35, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
322 3 0.01
323 172 0.67
324 81 0.32
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (323 bp):
TTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCAG
TGGAATAGATTAAAGCTACAAGTCACAAATCTATACCTCTGAAATTGCAGTAGGTCAGATAAAAT
CTACCATGGCAAATCTTATCTCCCTAAAGTTGTAGTGGAACAGATTGAAGTCACTAATCTTATCT
CCCTAAAGTTACAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCCCTAAAGTTACAGTAAAAC
AAATTGAAGCCACTAATCTTATCTCCTAGAAGTTACAGTGAAGCAGATTGAAGGTATCCAATT
Found at i:72793830 original size:12 final size:11
Alignment explanation
Indices: 72793811--72793842 Score: 55
Period size: 12 Copynumber: 2.8 Consensus size: 11
72793801 TACAAACTGT
72793811 TTATTTATTGA
1 TTATTTATTGA
72793822 TTGATTTATTGA
1 TT-ATTTATTGA
72793834 TTATTTATT
1 TTATTTATT
72793843 TATTTACTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (11 bp):
TTATTTATTGA
Found at i:72798866 original size:22 final size:22
Alignment explanation
Indices: 72798826--72798936 Score: 87
Period size: 22 Copynumber: 5.0 Consensus size: 22
72798816 TAGACCACAC
* *
72798826 CAGAGAGCACCATACTGCTAAA
1 CAGAGAGCACCAAAGTGCTAAA
* * *
72798848 TAGAGAGCACCAAAGTGCTGAT
1 CAGAGAGCACCAAAGTGCTAAA
* * * * *
72798870 CAGAGAGTATCGAAGTACTGAA
1 CAGAGAGCACCAAAGTGCTAAA
* *
72798892 CAGAGAGCACCAAAGTGTTGAA
1 CAGAGAGCACCAAAGTGCTAAA
* * *
72798914 CAAAGAGCACAAAAGTGTTAAA
1 CAGAGAGCACCAAAGTGCTAAA
72798936 C
1 C
72798937 CCATACAAGC
Statistics
Matches: 70, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 70 1.00
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.15
Consensus pattern (22 bp):
CAGAGAGCACCAAAGTGCTAAA
Found at i:72801500 original size:47 final size:47
Alignment explanation
Indices: 72801446--72801572 Score: 218
Period size: 47 Copynumber: 2.7 Consensus size: 47
72801436 TTTAAAAAAA
*
72801446 AGCTTATTTAACTAAAATCCTTGTTCCCCTAACGATAGTGTGAGTAT
1 AGCTTATTTAACTAAAATCCTTGTTCCCCTAACAATAGTGTGAGTAT
* * *
72801493 AGCTTATTTAACTAAAATCTTTGTTCCCCAAACAATAGTGTGCGTAT
1 AGCTTATTTAACTAAAATCCTTGTTCCCCTAACAATAGTGTGAGTAT
72801540 AGCTTATTTAACTAAAATCCTTGTTCCCCTAAC
1 AGCTTATTTAACTAAAATCCTTGTTCCCCTAAC
72801573 CAGGAAATAT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (47 bp):
AGCTTATTTAACTAAAATCCTTGTTCCCCTAACAATAGTGTGAGTAT
Found at i:72806649 original size:12 final size:12
Alignment explanation
Indices: 72806632--72806657 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
72806622 TGACAACAGG
72806632 GTGACCATCAGT
1 GTGACCATCAGT
72806644 GTGACCATCAGT
1 GTGACCATCAGT
72806656 GT
1 GT
72806658 AGCTCAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (12 bp):
GTGACCATCAGT
Found at i:72807681 original size:20 final size:20
Alignment explanation
Indices: 72807656--72807705 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
72807646 TGGCTTAAAA
72807656 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
72807676 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
72807693 GTGGTAGTGGATT
1 TTGGTAGTGGATT
72807706 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:72812320 original size:20 final size:20
Alignment explanation
Indices: 72812295--72812344 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
72812285 TGGCTTAAAA
72812295 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
72812315 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
72812332 GTGGTAGTGGATT
1 TTGGTAGTGGATT
72812345 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:72813853 original size:19 final size:19
Alignment explanation
Indices: 72813818--72813865 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
72813808 CAACAATAAT
72813818 ATAAAATA-ATGATATGTAC
1 ATAAAATATAT-ATATGTAC
72813837 A-AAATATATATATATGTAC
1 ATAAA-ATATATATATGTAC
72813856 ATAAAATATA
1 ATAAAATATA
72813866 CACTAATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 3 0.12
19 18 0.69
20 5 0.19
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.33
Consensus pattern (19 bp):
ATAAAATATATATATGTAC
Found at i:72813874 original size:21 final size:20
Alignment explanation
Indices: 72813837--72813879 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
72813827 TGATATGTAC
*
72813837 AAAATATATATATATGTACAT
1 AAAATATACATATATGTA-AT
72813858 AAAATATACACTA-ATGTAAT
1 AAAATATACA-TATATGTAAT
72813878 AA
1 AA
72813880 TAATTATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 14 0.70
22 2 0.10
ACGTcount: A:0.56, C:0.07, G:0.05, T:0.33
Consensus pattern (20 bp):
AAAATATACATATATGTAAT
Found at i:72814077 original size:11 final size:11
Alignment explanation
Indices: 72814050--72814092 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
72814040 TTGCATTAAA
*
72814050 AAAATATATAC
1 AAAATATATAT
*
72814061 ATAATATATAT
1 AAAATATATAT
*
72814072 AAAATACATAT
1 AAAATATATAT
*
72814083 AATATATATA
1 AAAATATATA
72814093 CGTATTAGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (11 bp):
AAAATATATAT
Found at i:72814929 original size:18 final size:17
Alignment explanation
Indices: 72814906--72814965 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
72814896 GGGTTTCTTA
72814906 GTTTTTTTTTTGGGTTAG
1 GTTTTTTTTTT-GGTTAG
**
72814924 GTTTTTCTTTTTTCTT--
1 GTTTTT-TTTTTGGTTAG
*
72814940 CTTTTTTTTTTGGTTAG
1 GTTTTTTTTTTGGTTAG
72814957 GTTTTTTTT
1 GTTTTTTTT
72814966 GGAGGGGCTT
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
15 7 0.21
16 5 0.15
17 8 0.24
18 8 0.24
19 5 0.15
ACGTcount: A:0.03, C:0.05, G:0.17, T:0.75
Consensus pattern (17 bp):
GTTTTTTTTTTGGTTAG
Found at i:72831066 original size:22 final size:21
Alignment explanation
Indices: 72831010--72831066 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 21
72831000 GTGAGGGTCT
72831010 CACACGCCCGTGTGCCCGCCAA
1 CACACGCCCGTGTGCCCG-CAA
* *
72831032 -ACACGACCATGTGCTCCG-AA
1 CACACGCCCGTGTGC-CCGCAA
72831052 GCACACGCCCGTGTG
1 -CACACGCCCGTGTG
72831067 GAATCCCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
20 2 0.07
21 12 0.43
22 14 0.50
ACGTcount: A:0.21, C:0.42, G:0.25, T:0.12
Consensus pattern (21 bp):
CACACGCCCGTGTGCCCGCAA
Found at i:72836433 original size:131 final size:132
Alignment explanation
Indices: 72836241--72836478 Score: 302
Period size: 131 Copynumber: 1.8 Consensus size: 132
72836231 GTAATTTGTG
* * * * * *
72836241 GAATCGTGCCCTAACATGTTGGGTTGCAATTTCTCATTTACTCAAAGTAATCGAAGGTCCCTTTA
1 GAATCGTGCCCTAACATGCTGGGTTGCAATTTCTCATCTACTCAAAATAATCAAAGATCCCTTCA
* *
72836306 GA-ATTTCAC-CTATGTCTTTTAAAAATCCCTT-GAACGAAGGCGATGTACTATATTTGGCAATT
66 -ACATTTCACTC-ATGTCTTCTAAAAATCCCTTAAAACGAAGGCGATGTACTATATTTGGCAATT
72836368 CACA
129 CACA
** * * *
72836372 GAATCGTGCCCTAATGTGCTGGGTTGCAATTTCTCGTCTACTTAAAATAATCAAATATCCCTTCA
1 GAATCGTGCCCTAACATGCTGGGTTGCAATTTCTCATCTACTCAAAATAATCAAAGATCCCTTCA
* *
72836437 ACATTTCACTCGTGTCTTCTAAAAATCCGTTAAAACGAAGGC
66 ACATTTCACTCATGTCTTCTAAAAATCCCTTAAAACGAAGGC
72836479 AATATTCGGT
Statistics
Matches: 89, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
130 1 0.01
131 78 0.88
132 10 0.11
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (132 bp):
GAATCGTGCCCTAACATGCTGGGTTGCAATTTCTCATCTACTCAAAATAATCAAAGATCCCTTCA
ACATTTCACTCATGTCTTCTAAAAATCCCTTAAAACGAAGGCGATGTACTATATTTGGCAATTCA
CA
Found at i:72836575 original size:131 final size:129
Alignment explanation
Indices: 72836371--72836714 Score: 336
Period size: 131 Copynumber: 2.6 Consensus size: 129
72836361 GGCAATTCAC
* * * * * * *
72836371 AGAATCGTGCCCTAAT-GTGCTGGGTTGCAATTTCTCGTCTACTTAAAATAATCAAATATCCCTT
1 AGAATCGTGCCCT-ATCGTGCTGGGTTGCGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTT
* * *
72836435 CAACATTTCACTCGTGTCTT-CTAAAAATCCGTT-AAAACGAAGGCAATATTCGGTGTTCGACAA
65 TAACATTTCACTCATGT-TTGCTAAAAA-CCGTTCAAAACG-AGG-AATATTCGATGTTCGACAA
72836498 TTTG
126 TTTG
* * *
72836502 GGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTT
1 AGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTT
*** * * * * * ***
72836567 AGGTTTTCACTCATGTTTGTTAAGAACCTTTCAAAACGAGGAATGTTCGATGTTTGGTGATTTG
66 AACATTTCACTCATGTTTGCTAAAAACCGTTCAAAACGAGGAATATTCGATGTTCGACAATTTG
* * * *
72836631 AGAATCGTGTCCTATCGTGTTGGGTTGCGA-TTCCCTGTTTGTTCAAAACAATCGAATATTCCTT
1 AGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTC-GTTTGCTCAAAACAATCGAATATTCCTT
*
72836695 TAAGAATTTCACTCATGTTT
65 TAA-CATTTCACTCATGTTT
72836715 TTTTAAATTC
Statistics
Matches: 174, Mismatches: 34, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
128 4 0.02
129 71 0.41
130 25 0.14
131 74 0.43
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (129 bp):
AGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTT
AACATTTCACTCATGTTTGCTAAAAACCGTTCAAAACGAGGAATATTCGATGTTCGACAATTTG
Found at i:72836741 original size:129 final size:128
Alignment explanation
Indices: 72836497--72836746 Score: 299
Period size: 129 Copynumber: 1.9 Consensus size: 128
72836487 GTGTTCGACA
* * *
72836497 ATTTGGGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATT
1 ATTTGAGAATCATGCCCTATCGTGCTGGGTTGCGATTCCTCGTTTGCTCAAAACAATCGAATATT
** * * *
72836562 CCTTTAGGTTTTCACTCATGTTTGTTAAGAACCTTTCAAAACGAGGAATGTTCGATGTTTGGTG
66 CCTTTAGAATTTCACTCATGTTTGTTAAGAA-CTTTAAAAACAAGGAATGTCCGATGTTTGGTG
* * * *
72836626 ATTTGAGAATCGTGTCCTATCGTGTTGGGTTGCGATTCC-CTGTTTGTTCAAAACAATCGAATAT
1 ATTTGAGAATCATGCCCTATCGTGCTGGGTTGCGATTCCTC-GTTTGCTCAAAACAATCGAATAT
* * *
72836690 TCCTTTAAGAATTTCACTCATGTTTTTTTA-AA-TTCTAAAAATAAGGCAATGTCCGAT
65 TCCTTT-AGAATTTCACTCATGTTTGTTAAGAACTT-TAAAAACAAGG-AATGTCCGAT
72836747 ATCTAGAAAT
Statistics
Matches: 102, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
127 2 0.02
128 9 0.09
129 72 0.71
130 19 0.19
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (128 bp):
ATTTGAGAATCATGCCCTATCGTGCTGGGTTGCGATTCCTCGTTTGCTCAAAACAATCGAATATT
CCTTTAGAATTTCACTCATGTTTGTTAAGAACTTTAAAAACAAGGAATGTCCGATGTTTGGTG
Found at i:72838346 original size:16 final size:16
Alignment explanation
Indices: 72838321--72838372 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 16
72838311 AAAAATGTTG
*
72838321 TAAAAATGTAATAAAA
1 TAAAATTGTAATAAAA
* *
72838337 TAAAATTGTAAATTAAT
1 TAAAATTGT-AATAAAA
*
72838354 TAAAATAGGTAATAAAA
1 TAAAAT-TGTAATAAAA
72838371 TA
1 TA
72838373 CATAGTGGAA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
16 8 0.29
17 18 0.64
18 2 0.07
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (16 bp):
TAAAATTGTAATAAAA
Found at i:72840936 original size:15 final size:14
Alignment explanation
Indices: 72840918--72840954 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
72840908 AAACAGAAAA
72840918 GAAAAGAAAAGAAGG
1 GAAAAGAAAAGAA-G
*
72840933 GAAAAGGAAAGAAG
1 GAAAAGAAAAGAAG
72840947 GAAAAGAA
1 GAAAAGAA
72840955 GAAAAAAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (14 bp):
GAAAAGAAAAGAAG
Found at i:72844408 original size:78 final size:78
Alignment explanation
Indices: 72844279--72844431 Score: 272
Period size: 78 Copynumber: 2.0 Consensus size: 78
72844269 TTGGCTAAGC
72844279 AATCTGCAACTTGGTTATTCTCCTTAAAAATGTGCCTTAAAAGCCATTGACCTTCATGAGACATA
1 AATCTGCAACTTGGTTATTCTCCTTAAAAATGTGCCTTAAAAGCCATTGACCTTCATGAGACATA
72844344 ATGCGTAGGAAGT
66 ATGCGTAGGAAGT
* *
72844357 AATCTGTAACTTGGTTATTCTTCC-TAGAAATGTGCCTTAAAAGCCATTGACCTTCATGAGACAT
1 AATCTGCAACTTGGTTATTC-TCCTTAAAAATGTGCCTTAAAAGCCATTGACCTTCATGAGACAT
72844421 AATGCGTAGGA
65 AATGCGTAGGA
72844432 TCCTTCTGAT
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
78 69 0.96
79 3 0.04
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.31
Consensus pattern (78 bp):
AATCTGCAACTTGGTTATTCTCCTTAAAAATGTGCCTTAAAAGCCATTGACCTTCATGAGACATA
ATGCGTAGGAAGT
Found at i:72846233 original size:12 final size:12
Alignment explanation
Indices: 72846216--72846281 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
72846206 TTTTTAGTCA
*
72846216 TATATTATTCAT
1 TATATTATACAT
**
72846228 TATATTAT-TTT
1 TATATTATACAT
72846239 TATTATTATACAT
1 TA-TATTATACAT
* *
72846252 TTTATTTATAAAT
1 TATA-TTATACAT
*
72846265 TTTATTATACAT
1 TATATTATACAT
72846277 TATAT
1 TATAT
72846282 ATTTTACTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
11 3 0.07
12 27 0.63
13 13 0.30
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.61
Consensus pattern (12 bp):
TATATTATACAT
Found at i:72846502 original size:10 final size:10
Alignment explanation
Indices: 72846434--72846506 Score: 53
Period size: 10 Copynumber: 7.2 Consensus size: 10
72846424 TATATGATAG
72846434 TTATCATATTA
1 TTAT-ATATTA
72846445 TTATAT-TTCA
1 TTATATATT-A
*
72846455 TTATATTTTA
1 TTATATATTA
72846465 TTTATATATT-
1 -TTATATATTA
* *
72846475 TTGT-TACATA
1 TTATATA-TTA
*
72846485 TCATATATTA
1 TTATATATTA
72846495 TTATATATTA
1 TTATATATTA
72846505 TT
1 TT
72846507 CCCTATATTA
Statistics
Matches: 49, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
8 2 0.04
9 6 0.12
10 25 0.51
11 16 0.33
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.60
Consensus pattern (10 bp):
TTATATATTA
Found at i:72858445 original size:44 final size:44
Alignment explanation
Indices: 72858384--72858788 Score: 507
Period size: 44 Copynumber: 9.5 Consensus size: 44
72858374 GGGACAATGT
* * * *
72858384 AGATCGAAAATAGCAGATGTGGCATCTTTGTATTGTCAGAGAGT
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* *
72858428 AGATCGAAGATAGCAGATTTGACATCTCTGTATTGTCAGAGAGT
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* *
72858472 AGATTGAAGATAGCAGATTTGGCATCTCTGTATTGTCAAAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
*
72858516 AAATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
72858560 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
72858604 AGATC-------G-AG----GGCATCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
*
72858636 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* * * * *
72858680 AGATCAAAGATAGAAGATTTGACGTCTCTGTATTGTTAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* * * *
72858724 AGATCGGAGATAGCAGATTTAGCGTCTCTGTGTTGAT-AG-GAAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTG-TCAGAG-AGC
72858768 AGAGT-GAAGATAGCAGATTTG
1 AGA-TCGAAGATAGCAGATTTG
72858789 ACATTCTTGA
Statistics
Matches: 321, Mismatches: 25, Indels: 30
0.85 0.07 0.08
Matches are distributed among these distances:
32 29 0.09
36 2 0.01
37 1 0.00
39 1 0.00
40 2 0.01
43 1 0.00
44 283 0.88
45 2 0.01
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (44 bp):
AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
Found at i:72858618 original size:32 final size:32
Alignment explanation
Indices: 72858580--72858642 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
72858570 TAGCAGATTT
72858580 GGCATCTCTGTATTGTCAGAGAGCAGATCGAG
1 GGCATCTCTGTATTGTCAGAGAGCAGATCGAG
72858612 GGCATCTCTGTATTGTCAGAGAGCAGATCGA
1 GGCATCTCTGTATTGTCAGAGAGCAGATCGA
72858643 AGATAGCAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (32 bp):
GGCATCTCTGTATTGTCAGAGAGCAGATCGAG
Found at i:72858625 original size:76 final size:76
Alignment explanation
Indices: 72858536--72858684 Score: 289
Period size: 76 Copynumber: 2.0 Consensus size: 76
72858526 TAGCAGATTT
72858536 GGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
1 GGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
72858601 AGCAGATCGAG
66 AGCAGATCGAG
*
72858612 GGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAG
1 GGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
72858677 AGCAGATC
66 AGCAGATC
72858685 AAAGATAGAA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 72 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (76 bp):
GGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
AGCAGATCGAG
Found at i:72858650 original size:120 final size:120
Alignment explanation
Indices: 72858492--72858729 Score: 404
Period size: 120 Copynumber: 2.0 Consensus size: 120
72858482 TAGCAGATTT
72858492 GGCATCTCTGTATTGTCAAAGAGCAAATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
1 GGCATCTCTGTATTGTCAAAGAGCAAATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
* * *
72858557 AGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAG
66 AGCAGATCAAAGATAGAAGATTTGACATCTCTGTATTGTCAGAGAGCAGATCGAG
* * *
72858612 GGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAG
1 GGCATCTCTGTATTGTCAAAGAGCAAATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
* *
72858677 AGCAGATCAAAGATAGAAGATTTGACGTCTCTGTATTGTTAGAGAGCAGATCG
66 AGCAGATCAAAGATAGAAGATTTGACATCTCTGTATTGTCAGAGAGCAGATCG
72858730 GAGATAGCAG
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
120 110 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (120 bp):
GGCATCTCTGTATTGTCAAAGAGCAAATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
AGCAGATCAAAGATAGAAGATTTGACATCTCTGTATTGTCAGAGAGCAGATCGAG
Found at i:72858723 original size:164 final size:164
Alignment explanation
Indices: 72858450--72858754 Score: 493
Period size: 164 Copynumber: 1.9 Consensus size: 164
72858440 GCAGATTTGA
* *
72858450 CATCTCTGTATTGTCAGAGAGTAGATTGAAGATAGCAGATTTGGCATCTCTGTATTGTCAAAGAG
1 CATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAAAGAG
* * *
72858515 CAAATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTT
66 CAAATCAAAGATAGAAGATTTGACATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTT
*
72858580 GGCATCTCTGTATTGTCAGAGAGCAGATCGAGGG
131 AGCATCTCTGTATTGTCAGAGAGCAGATCGAGGG
* *
72858614 CATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAG
1 CATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAAAGAG
* * * *
72858679 CAGATCAAAGATAGAAGATTTGACGTCTCTGTATTGTTAGAGAGCAGATCGGAGATAGCAGATTT
66 CAAATCAAAGATAGAAGATTTGACATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTT
*
72858744 AGCGTCTCTGT
131 AGCATCTCTGT
72858755 GTTGATAGGA
Statistics
Matches: 128, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
164 128 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (164 bp):
CATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAAAGAG
CAAATCAAAGATAGAAGATTTGACATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTT
AGCATCTCTGTATTGTCAGAGAGCAGATCGAGGG
Found at i:72858779 original size:208 final size:208
Alignment explanation
Indices: 72858404--72858788 Score: 569
Period size: 208 Copynumber: 1.9 Consensus size: 208
72858394 TAGCAGATGT
* *
72858404 GGCATCTTTGTATTGTCAGAGAGTAGATCGAAGATAGCAGATTTGACATCTCTGTATTGTCAGAG
1 GGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGACATCTCTGTATTGTCAGAG
* ** * *
72858469 AGTAGATTGAAGATAGCAGATTTGGCATCTCTGTATTGTCAAAGAGCAAATCGAAGATAGCAGAT
66 AGCAGATCAAAGATAGAAGATTTGACATCTCTGTATTGTCAAAGAGCAAATCGAAGATAGCAGAT
*
72858534 TTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAG
131 TTAGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAG
72858599 AGAGCAGATCGAG
196 AGAGCAGATCGAG
* *
72858612 GGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAG
1 GGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGACATCTCTGTATTGTCAGAG
* * * * *
72858677 AGCAGATCAAAGATAGAAGATTTGACGTCTCTGTATTGTTAGAGAGCAGATCGGAGATAGCAGAT
66 AGCAGATCAAAGATAGAAGATTTGACATCTCTGTATTGTCAAAGAGCAAATCGAAGATAGCAGAT
* *
72858742 TTAGCGTCTCTGTGTTGAT-AG-GAAGCAGAGT-GAAGATAGCAGATTTG
131 TTAGCATCTCTGTATTG-TCAGAG-AGCAGA-TCGAAGATAGCAGATTTG
72858789 ACATTCTTGA
Statistics
Matches: 157, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
207 1 0.01
208 154 0.98
209 2 0.01
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (208 bp):
GGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGACATCTCTGTATTGTCAGAG
AGCAGATCAAAGATAGAAGATTTGACATCTCTGTATTGTCAAAGAGCAAATCGAAGATAGCAGAT
TTAGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAG
AGAGCAGATCGAG
Found at i:72860422 original size:12 final size:12
Alignment explanation
Indices: 72860407--72860443 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
72860397 ATTATTTTTA
72860407 TTATTATACATT
1 TTATTATACATT
*
72860419 TTATTTATAAATT
1 TTA-TTATACATT
72860432 TTATTATACATT
1 TTATTATACATT
72860444 ATATATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (12 bp):
TTATTATACATT
Found at i:72860669 original size:10 final size:10
Alignment explanation
Indices: 72860601--72860673 Score: 62
Period size: 10 Copynumber: 7.2 Consensus size: 10
72860591 TATATGATAG
72860601 TTATCATATTA
1 TTAT-ATATTA
72860612 TTATAT-TTCA
1 TTATATATT-A
*
72860622 TTATATTTTA
1 TTATATATTA
72860632 TTTATATATT-
1 -TTATATATTA
*
72860642 TTAT-TACATA
1 TTATATA-TTA
*
72860652 TCATATATTA
1 TTATATATTA
72860662 TTATATATTA
1 TTATATATTA
72860672 TT
1 TT
72860674 CCCTATATTA
Statistics
Matches: 51, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
8 2 0.04
9 7 0.14
10 26 0.51
11 16 0.31
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.60
Consensus pattern (10 bp):
TTATATATTA
Found at i:72867433 original size:22 final size:22
Alignment explanation
Indices: 72867408--72867453 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
72867398 AAACCTTTTC
*
72867408 TTTTCTTCGATCTAACCTCAAA
1 TTTTCTTCAATCTAACCTCAAA
72867430 TTTTCTTCAATCTAACCTCAAA
1 TTTTCTTCAATCTAACCTCAAA
72867452 TT
1 TT
72867454 AGTGTTGTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.02, T:0.43
Consensus pattern (22 bp):
TTTTCTTCAATCTAACCTCAAA
Found at i:72869496 original size:18 final size:18
Alignment explanation
Indices: 72869482--72869517 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
72869472 GGGTAGGTGG
72869482 CACCTATCTGGTAGGCGC
1 CACCTATCTGGTAGGCGC
72869500 CACCTATCTGGTAGGCGC
1 CACCTATCTGGTAGGCGC
72869518 GACTGGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.33, G:0.28, T:0.22
Consensus pattern (18 bp):
CACCTATCTGGTAGGCGC
Found at i:72872711 original size:76 final size:74
Alignment explanation
Indices: 72872563--72872792 Score: 318
Period size: 76 Copynumber: 3.0 Consensus size: 74
72872553 TTACAAAGTT
* * **
72872563 AATATAAAGTTTATTTATTTAAATTG-AAAAAAAACCATAAAATTGATAACTAAAATAGCGAAAA
1 AATATAAAGTTTA-CTATTTAAATTGCAAAAAAAA-CATAAAATTGATAAATAAAAT-GAAAAAA
*
72872627 AGTTATTACATA
63 AGTCATTACATA
*
72872639 AATACAAAGTTTACTATTTAAATTGCAAAAAAAAATCATAAAATTGATAAATAAAATGAAAAAAA
1 AATATAAAGTTTACTATTTAAATTGC-AAAAAAAA-CATAAAATTGATAAATAAAATGAAAAAAA
72872704 GTCATTACATA
64 GTCATTACATA
**
72872715 AATATAAAGTTTACTATTTAAATTGCAAAAAAAACATAAAATTGATAAATAAAATGACAAAAACT
1 AATATAAAGTTTACTATTTAAATTGCAAAAAAAACATAAAATTGATAAATAAAATGA-AAAAAAG
*
72872780 TCATCACATA
65 TCATTACATA
72872790 AAT
1 AAT
72872793 GTGAAGTTAT
Statistics
Matches: 140, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
74 23 0.16
75 36 0.26
76 53 0.38
77 28 0.20
ACGTcount: A:0.56, C:0.08, G:0.07, T:0.29
Consensus pattern (74 bp):
AATATAAAGTTTACTATTTAAATTGCAAAAAAAACATAAAATTGATAAATAAAATGAAAAAAAGT
CATTACATA
Found at i:72875232 original size:105 final size:98
Alignment explanation
Indices: 72875114--72875334 Score: 318
Period size: 105 Copynumber: 2.2 Consensus size: 98
72875104 ATCACAAAAC
72875114 ACTAAACACTAACAATTTATATAACCTAATCATAAACTACTAACAAAATAACTATAAAATTATTT
1 ACTAAACACTAACAATTTATATAACCTAATCATAAACTACTAACAAAATAACTAT---A--ATTT
*
72875179 TTTTTAAAAAATACATTACTAAAATATCACAAAACACATA-
61 TTTTT--AAAATACATTACTAAAAAATCACAAAAC-CATAT
* *
72875219 ACTAAACATTAACAATTTATATAACCTAATCATAAATTACTAACAAAATAACTATAATTTTTTTT
1 ACTAAACACTAACAATTTATATAACCTAATCATAAACTACTAACAAAATAACTATAATTTTTTTT
* *
72875284 AAATTACATTACTAAAAAATCACAAAACCCTAT
66 AAAATACATTACTAAAAAATCACAAAACCATAT
72875317 ACTAAACACTAACAATTT
1 ACTAAACACTAACAATTT
72875335 GTAACATAAT
Statistics
Matches: 109, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
97 3 0.03
98 43 0.39
100 9 0.08
102 1 0.01
105 53 0.49
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.32
Consensus pattern (98 bp):
ACTAAACACTAACAATTTATATAACCTAATCATAAACTACTAACAAAATAACTATAATTTTTTTT
AAAATACATTACTAAAAAATCACAAAACCATAT
Found at i:72875233 original size:23 final size:22
Alignment explanation
Indices: 72875182--72875233 Score: 52
Period size: 23 Copynumber: 2.3 Consensus size: 22
72875172 ATTATTTTTT
* *
72875182 TTAA-AAAATACATTACTAAAA
1 TTAACAAAACACATAACTAAAA
*
72875203 TATCACAAAACACATAACTAAACA
1 T-TAACAAAACACATAACTAAA-A
72875227 TTAACAA
1 TTAACAA
72875234 TTTATATAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
21 1 0.04
22 2 0.08
23 19 0.79
24 2 0.08
ACGTcount: A:0.60, C:0.17, G:0.00, T:0.23
Consensus pattern (22 bp):
TTAACAAAACACATAACTAAAA
Found at i:72875350 original size:98 final size:101
Alignment explanation
Indices: 72875114--72875367 Score: 331
Period size: 98 Copynumber: 2.5 Consensus size: 101
72875104 ATCACAAAAC
*
72875114 ACTAAACACTAACAATTTATATAACCTAATCATAAACTACTAACAAAATAACTATAAAATTATTT
1 ACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAACAAAATAACTAT--AA-TATTT
*
72875179 TTTTTAAAAAATACATTACTAAAATATCACAAAACACATA
63 TTTTT-AAAAATACATTACTAAAAAATCACAAAACACATA
*
72875219 ACTAAACATTAACAATTTATATAACCTAATCATAAATTACTAACAAAATAACTAT-A-ATTTTTT
1 ACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAACAAAATAACTATAATATTTTTT
* *
72875282 TT-AAATTACATTACTAAAAAATCACAAAAC-CCTA
66 TTAAAAATACATTACTAAAAAATCACAAAACACATA
* * *
72875316 TACTAAACACTAACAA-TT-TGTAACATAATCTCATAAATTATTAACAAAATAA
1 -ACTAAACACTAACAATTTATATAACCTAA--TCATAAATTACTAACAAAATAA
72875368 ATAACTATAA
Statistics
Matches: 137, Mismatches: 9, Indels: 13
0.86 0.06 0.08
Matches are distributed among these distances:
96 8 0.06
97 5 0.04
98 61 0.45
100 9 0.07
102 1 0.01
105 53 0.39
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.31
Consensus pattern (101 bp):
ACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAACAAAATAACTATAATATTTTTT
TTAAAAATACATTACTAAAAAATCACAAAACACATA
Found at i:72875671 original size:58 final size:59
Alignment explanation
Indices: 72875568--72875680 Score: 158
Period size: 58 Copynumber: 1.9 Consensus size: 59
72875558 ACTAAATACA
* * *
72875568 ACAACAATTTATAACATAAACCTAAATTACTAATAAATTAGTTTTAGAATAATTACGAAC
1 ACAACAATTCATAACATAAACCT-AATTACTAACAAATTAGTTTTAAAATAATTACGAAC
*
72875628 ACAACAATTCATAACATAATCCT-ATTACTAACAAATT-GATTTTAAAATAATTA
1 ACAACAATTCATAACATAAACCTAATTACTAACAAATTAG-TTTTAAAATAATTA
72875681 TAAAAAAATA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
57 1 0.02
58 26 0.54
60 21 0.44
ACGTcount: A:0.50, C:0.14, G:0.04, T:0.33
Consensus pattern (59 bp):
ACAACAATTCATAACATAAACCTAATTACTAACAAATTAGTTTTAAAATAATTACGAAC
Found at i:72875877 original size:20 final size:19
Alignment explanation
Indices: 72875852--72875912 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 19
72875842 TTTTGTTTCT
72875852 TTCTTTCTTTCTTCTTCTTC
1 TTCTTTCTTT-TTCTTCTTC
* *
72875872 TTCTTTTTTTTTTCTCCTTTC
1 TTC-TTTCTTTTTCTTC-TTC
72875893 TCTCCTTTCTTTTTC-TCTTC
1 T-T-CTTTCTTTTTCTTCTTC
72875913 CGGTAGTTGC
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
20 11 0.33
21 11 0.33
22 10 0.30
23 1 0.03
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (19 bp):
TTCTTTCTTTTTCTTCTTC
Found at i:72876241 original size:18 final size:18
Alignment explanation
Indices: 72876218--72876255 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
72876208 TCTTTAAAGT
72876218 AAAAAATATTTTAAGCGC
1 AAAAAATATTTTAAGCGC
72876236 AAAAAATATTTTAAGCGC
1 AAAAAATATTTTAAGCGC
72876254 AA
1 AA
72876256 CCCAAAAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.26
Consensus pattern (18 bp):
AAAAAATATTTTAAGCGC
Found at i:72889159 original size:19 final size:20
Alignment explanation
Indices: 72889135--72889172 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
72889125 TGTTTCTTTC
72889135 TTTATTCATTTT-TTAAATA
1 TTTATTCATTTTCTTAAATA
*
72889154 TTTATTCTTTTTCTTAAAT
1 TTTATTCATTTTCTTAAAT
72889173 TTTTTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTATTCATTTTCTTAAATA
Found at i:72931440 original size:5 final size:5
Alignment explanation
Indices: 72931430--72931465 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
72931420 ATACAATCCC
72931430 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA T
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA T
72931466 TTTAAATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
TAAAA
Found at i:72933071 original size:14 final size:15
Alignment explanation
Indices: 72933042--72933091 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
72933032 CAAAATAAAC
*
72933042 ATTTTCATTAAATTA
1 ATTTTAATTAAATTA
72933057 ATTTTAATT-AATTA
1 ATTTTAATTAAATTA
72933071 ATTTTCTAATTAAATT-
1 A-TTT-TAATTAAATTA
72933087 ATTTT
1 ATTTT
72933092 TTCAACCAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
14 7 0.23
15 14 0.45
16 6 0.19
17 4 0.13
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTTTAATTAAATTA
Found at i:72946679 original size:21 final size:20
Alignment explanation
Indices: 72946653--72946692 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
72946643 ACTTTTTTAA
72946653 CTATCAACAACCATTCAAAAT
1 CTATCAACAACCA-TCAAAAT
* *
72946674 CTATCATCAATCATCAAAA
1 CTATCAACAACCATCAAAA
72946693 CCCATACATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (20 bp):
CTATCAACAACCATCAAAAT
Found at i:72971033 original size:22 final size:23
Alignment explanation
Indices: 72971008--72971050 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
72970998 ATGCCATATC
*
72971008 ATAAACA-ACCAAATTCATGCTT
1 ATAAACATACCAAAATCATGCTT
*
72971030 ATAACCATACCAAAATCATGC
1 ATAAACATACCAAAATCATGC
72971051 CAAATCATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.47, C:0.26, G:0.05, T:0.23
Consensus pattern (23 bp):
ATAAACATACCAAAATCATGCTT
Found at i:72971877 original size:43 final size:43
Alignment explanation
Indices: 72971811--72971967 Score: 180
Period size: 43 Copynumber: 3.7 Consensus size: 43
72971801 AGCTTGTACA
72971811 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
* *
72971854 ATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCACTGTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
* * *
72971896 ATGTCGA-TGTCCCAGACATGGTCTTACATGTAAATCATAA-GTCG
1 ATG-CCACTGTCCCAGACGTGGTCTTACATGT-AATCA-AATATCG
*
72971940 ATGCCAATGTCCCAGACGTGGTCTTACA
1 ATGCCACTGTCCCAGACGTGGTCTTACA
72971968 CGAAAACACA
Statistics
Matches: 97, Mismatches: 9, Indels: 15
0.80 0.07 0.12
Matches are distributed among these distances:
42 26 0.27
43 44 0.45
44 27 0.28
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
Found at i:72972000 original size:86 final size:84
Alignment explanation
Indices: 72971811--72971980 Score: 209
Period size: 86 Copynumber: 2.0 Consensus size: 84
72971801 AGCTTGTACA
* * *
72971811 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCGACGT-CCAGACATGGTCTTACATGTAATCAAATATCGATGCCAATGTCCCAGACAGGGT
*
72971876 CTTACACGAAATCAAATATG
65 CTTACACGAAAACAAATATG
* * *
72971896 ATGTCGATGTCCCAGACATGGTCTTACATGTAAATCATAA-GTCGATGCCAATGTCCCAGAC-GT
1 ATGCCGACGT-CCAGACATGGTCTTACATGT-AATCA-AATATCGATGCCAATGTCCCAGACAG-
*
72971959 GGTCTTACACGAAAACACATAT
62 GGTCTTACACGAAAACAAATAT
72971981 CGGATCCTAC
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
85 28 0.38
86 44 0.59
87 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (84 bp):
ATGCCGACGTCCAGACATGGTCTTACATGTAATCAAATATCGATGCCAATGTCCCAGACAGGGTC
TTACACGAAAACAAATATG
Found at i:72983764 original size:39 final size:40
Alignment explanation
Indices: 72983546--72983738 Score: 289
Period size: 40 Copynumber: 4.8 Consensus size: 40
72983536 TCGGATAATA
* * *
72983546 ACCGGGCTAAGTTCCGAAGGCATTTGTGCTAGTGACTAAT-
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATG
* *
72983586 TCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATG
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATG
*
72983626 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATG
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATG
* *
72983666 ACCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTTACTATG
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATG
*
72983706 ACCGGGCTAAGTCCCGAAGGCATTTGGGCGAGT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
72983739 AGCTATATCC
Statistics
Matches: 140, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 2 0.01
40 138 0.99
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATG
Found at i:72997028 original size:26 final size:26
Alignment explanation
Indices: 72996984--72997034 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
72996974 TTTATAGGTG
* *
72996984 GAAAATTTACAGATTTACCCCTAGGA
1 GAAAAATTACAGATATACCCCTAGGA
*
72997010 GAAAAATTACTGATATACCCCTAGG
1 GAAAAATTACAGATATACCCCTAGG
72997035 GTTAAGGTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (26 bp):
GAAAAATTACAGATATACCCCTAGGA
Found at i:73000889 original size:41 final size:41
Alignment explanation
Indices: 73000844--73000985 Score: 162
Period size: 41 Copynumber: 3.5 Consensus size: 41
73000834 ATGGGGACAT
*
73000844 GTATGTGCAATTCAAGGGTACCAAAGTTCAAACAAGGGCAC
1 GTATGTGCAATTCAAGGGTACCGAAGTTCAAACAAGGGCAC
* * * * * * *
73000885 GTATGAGGAGTTCAGGGGTATCGAAGTACAAACAGGGGCAC
1 GTATGTGCAATTCAAGGGTACCGAAGTTCAAACAAGGGCAC
* *
73000926 GTATGTGCAATTCAGGGGTACCGAA-TTACAAACATGGGCAC
1 GTATGTGCAATTCAAGGGTACCGAAGTT-CAAACAAGGGCAC
*
73000967 GTATGTGTAATTC-AGGGTA
1 GTATGTGCAATTCAAGGGTA
73000986 TAATTAAGTG
Statistics
Matches: 84, Mismatches: 16, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
40 6 0.07
41 78 0.93
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (41 bp):
GTATGTGCAATTCAAGGGTACCGAAGTTCAAACAAGGGCAC
Found at i:73000942 original size:21 final size:21
Alignment explanation
Indices: 73000917--73000983 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
73000907 GAAGTACAAA
73000917 CAGGGGCACGTATGTGCAATT
1 CAGGGGCACGTATGTGCAATT
* * * *
73000938 CAGGGGTACCGAAT-TACAA-A
1 CAGGGGCA-CGTATGTGCAATT
* *
73000958 CATGGGCACGTATGTGTAATT
1 CAGGGGCACGTATGTGCAATT
73000979 CAGGG
1 CAGGG
73000984 TATAATTAAG
Statistics
Matches: 32, Mismatches: 11, Indels: 6
0.65 0.22 0.12
Matches are distributed among these distances:
19 4 0.12
20 9 0.28
21 15 0.47
22 4 0.12
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.22
Consensus pattern (21 bp):
CAGGGGCACGTATGTGCAATT
Found at i:73008054 original size:13 final size:13
Alignment explanation
Indices: 73008036--73008068 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
73008026 TCAAAGTTGG
73008036 GTCACACAATCGT
1 GTCACACAATCGT
*
73008049 GTCACACAGTCGT
1 GTCACACAATCGT
73008062 GTCACAC
1 GTCACAC
73008069 GCTGTGTCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.21
Consensus pattern (13 bp):
GTCACACAATCGT
Found at i:73010137 original size:28 final size:28
Alignment explanation
Indices: 73010105--73010160 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
73010095 TATGTTTTAA
73010105 CACTTTTAAATTTTTAATTAACAAAAAT
1 CACTTTTAAATTTTTAATTAACAAAAAT
73010133 CACTTTTAAATTTTTAATTAACAAAAAT
1 CACTTTTAAATTTTTAATTAACAAAAAT
73010161 AACACATACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (28 bp):
CACTTTTAAATTTTTAATTAACAAAAAT
Found at i:73011196 original size:58 final size:58
Alignment explanation
Indices: 73011133--73011247 Score: 221
Period size: 58 Copynumber: 2.0 Consensus size: 58
73011123 TTCAATCCCC
*
73011133 TTAGTCAAATGTCTTCTTGTATGGGACATGCATCCCCTTAATTGATACCTTTAATGTT
1 TTAGTCAAATGTCTTCTTGCATGGGACATGCATCCCCTTAATTGATACCTTTAATGTT
73011191 TTAGTCAAATGTCTTCTTGCATGGGACATGCATCCCCTTAATTGATACCTTTAATGT
1 TTAGTCAAATGTCTTCTTGCATGGGACATGCATCCCCTTAATTGATACCTTTAATGT
73011248 GTCTTAGGAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (58 bp):
TTAGTCAAATGTCTTCTTGCATGGGACATGCATCCCCTTAATTGATACCTTTAATGTT
Found at i:73019672 original size:26 final size:26
Alignment explanation
Indices: 73019643--73019724 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
73019633 TGATACAAAT
73019643 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
73019669 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
73019695 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
73019721 TGAT
1 TGAT
73019725 GGGAATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:73022941 original size:12 final size:12
Alignment explanation
Indices: 73022924--73022954 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
73022914 ACTCGGCGAA
73022924 GAGGCCGTGGTC
1 GAGGCCGTGGTC
73022936 GAGGCCGTGGTC
1 GAGGCCGTGGTC
*
73022948 AAGGCCG
1 GAGGCCG
73022955 AGGTAGTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.26, G:0.48, T:0.13
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:73027855 original size:26 final size:26
Alignment explanation
Indices: 73027826--73027933 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
73027816 TGATACAAAT
*
73027826 TGATAATGGGTTAGGTAAACGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
73027852 TGATAATGGGTTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
73027878 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
73027904 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
73027930 TGAT
1 TGAT
73027934 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:73035703 original size:16 final size:18
Alignment explanation
Indices: 73035676--73035708 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
73035666 TAGAATTGTG
73035676 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
73035693 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
73035709 GTTAATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:73040476 original size:43 final size:43
Alignment explanation
Indices: 73040415--73040497 Score: 157
Period size: 43 Copynumber: 1.9 Consensus size: 43
73040405 TGAGAGTATT
*
73040415 AAAATTTTGGTGAATTAATTTTAGCGATTTCATGCTTAATATG
1 AAAATTTTGGTAAATTAATTTTAGCGATTTCATGCTTAATATG
73040458 AAAATTTTGGTAAATTAATTTTAGCGATTTCATGCTTAAT
1 AAAATTTTGGTAAATTAATTTTAGCGATTTCATGCTTAAT
73040498 TGTGAAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.34, C:0.07, G:0.14, T:0.45
Consensus pattern (43 bp):
AAAATTTTGGTAAATTAATTTTAGCGATTTCATGCTTAATATG
Found at i:73040515 original size:43 final size:42
Alignment explanation
Indices: 73040427--73040515 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 42
73040417 AATTTTGGTG
* *
73040427 AATTAATTTTAGCGATTTCATGCTTAATATGAAAATTTTGGTA
1 AATTAATTTTAGCGATTTCATGCTTAATATGAAAA-TATGCTA
*
73040470 AATTAATTTTAGCGATTTCATGCTTAATTGTGAAAA-ATGACTA
1 AATTAATTTTAGCGATTTCATGCTTAA-TATGAAAATATG-CTA
73040513 AAT
1 AAT
73040516 CGCATAAAGT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
42 2 0.05
43 32 0.78
44 7 0.17
ACGTcount: A:0.37, C:0.08, G:0.13, T:0.42
Consensus pattern (42 bp):
AATTAATTTTAGCGATTTCATGCTTAATATGAAAATATGCTA
Found at i:73041698 original size:46 final size:46
Alignment explanation
Indices: 73041549--73041760 Score: 209
Period size: 46 Copynumber: 4.6 Consensus size: 46
73041539 TTATTTGTGT
* ** *
73041549 GCCAGTGTAAGACATGCCTGGGACATGCATCGGCCATATA-ATGAGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGAGATGAGA
* * *
73041595 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGA
* *
73041643 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGA
* * * *
73041689 GCCAATGTAAAACATGTCTAGGACATGCATCGG-CTACGAGA-G-GT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGA
*
73041733 GTCAGTGTAAGACCATGTCTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
73041761 GCATTGACAC
Statistics
Matches: 138, Mismatches: 21, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
44 9 0.07
45 17 0.12
46 60 0.43
47 29 0.21
48 23 0.17
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGA
Found at i:73052174 original size:46 final size:48
Alignment explanation
Indices: 73052027--73052298 Score: 199
Period size: 46 Copynumber: 5.8 Consensus size: 48
73052017 TTATTTGTGT
* * * *
73052027 GCCAGTGTAAGA-CATGCCTAGGACATGCATCTGCCAC-ATTATG-AGA
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-TATGTAGA
* ** * * *
73052073 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTATTGAGACG-AGA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGATATGTAGA
* * *
73052121 GCTAGTGTAAGA-AATGCCTGGGACATGCATCGGCCTCGATATGTA-A
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGATATGTAGA
* * * *
73052167 GCCAGTGTAAGA-CATGTCTGGGACAGGCATTGG-CTATGATA-G--GT
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGATATGTAGA
* * *
73052211 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGTCAC-GGATATGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-CTCGATATGT-AGA
* *
73052261 GCTAGTGTAAGACTATGTCTGGGACATGCCATCGGCCT
1 GCCAGTGTAAGACCATGTCTGGGACATG-CATCGGCCT
73052299 TGATTTTGAT
Statistics
Matches: 176, Mismatches: 34, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
44 11 0.06
45 16 0.09
46 66 0.38
47 26 0.15
48 23 0.13
49 3 0.02
50 31 0.18
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGATATGTAGA
Found at i:73053486 original size:51 final size:51
Alignment explanation
Indices: 73053407--73053514 Score: 162
Period size: 51 Copynumber: 2.1 Consensus size: 51
73053397 AGAATTTAAT
*
73053407 TCACACGGGCATGGGACACGGGCATGTCCCTAGATGCTTAGGCCGTATGTG
1 TCACACAGGCATGGGACACGGGCATGTCCCTAGATGCTTAGGCCGTATGTG
* * * * *
73053458 TCACACAGGTATGGGACACGGGCGTGTCCCTAGATGCTTAGGTCGTGTTTG
1 TCACACAGGCATGGGACACGGGCATGTCCCTAGATGCTTAGGCCGTATGTG
73053509 TCACAC
1 TCACAC
73053515 GGGCCATCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.24
Consensus pattern (51 bp):
TCACACAGGCATGGGACACGGGCATGTCCCTAGATGCTTAGGCCGTATGTG
Found at i:73053535 original size:51 final size:51
Alignment explanation
Indices: 73053407--73053535 Score: 116
Period size: 51 Copynumber: 2.5 Consensus size: 51
73053397 AGAATTTAAT
* ** * *
73053407 TCACACGGGCATGGGACACGGGCATGTCCCTAGATGCTTAGGCCGTATGTG
1 TCACACAGGCATCAGACACGGCCGTGTCCCTAGATGCTTAGGCCGTATGTG
* ** * * * *
73053458 TCACACAGGTATGGGACACGGGCGTGTCCCTAGATGCTTAGGTCGTGTTTG
1 TCACACAGGCATCAGACACGGCCGTGTCCCTAGATGCTTAGGCCGTATGTG
* *
73053509 TCACACGGGCCATCAG-CATGGCCGTGT
1 TCACACAGG-CATCAGACACGGCCGTGT
73053536 TATAATGACC
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
51 62 0.95
52 3 0.05
ACGTcount: A:0.19, C:0.26, G:0.33, T:0.23
Consensus pattern (51 bp):
TCACACAGGCATCAGACACGGCCGTGTCCCTAGATGCTTAGGCCGTATGTG
Found at i:73055473 original size:47 final size:48
Alignment explanation
Indices: 73055292--73055511 Score: 177
Period size: 47 Copynumber: 4.7 Consensus size: 48
73055282 ATTACAAGAA
* * *
73055292 CCAGTGTAAGACCATGTCTGGGACATGGCATC-AGCATTGAGACGA-GTG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATCGAGA-TATGAG
* * * * * * *
73055340 CTAGTGTAAGA-CATGTCCGGGATAT-GCATCGGCATCGGGACATAAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATATGAG
* * * *
73055386 CCAGTGTAAGA-CATGTCTAGGACAT-GCGTCGGC-TACGAGATGTGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACAT-CGAGATATGAG
* * * *
73055432 TCAGTGTAAGACCATGTCTGGGATATGGCTTCGAC-TTGAGATATGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATATGAG
* *
73055479 CCAGTGTAAGACCGTGTCTAGGACATGGCATCG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCG
73055512 GCGCCTTAAC
Statistics
Matches: 137, Mismatches: 30, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
45 2 0.01
46 57 0.42
47 61 0.45
48 17 0.12
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (48 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATATGAG
Found at i:73058253 original size:46 final size:46
Alignment explanation
Indices: 73058201--73058328 Score: 211
Period size: 46 Copynumber: 2.8 Consensus size: 46
73058191 GGTTGAGCAT
* * *
73058201 CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
73058247 CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
73058293 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73058329 GCGGGTTACA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:73065310 original size:46 final size:46
Alignment explanation
Indices: 73065260--73065435 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
73065250 TGGTTGAGCA
* *
73065260 TCCGAACTCATTGAGTTGAGTCGGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
73065306 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
73065351 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
73065399 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73065436 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:73065416 original size:93 final size:93
Alignment explanation
Indices: 73065257--73065427 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
73065247 GGATGGTTGA
* * *
73065257 GCATCCGAACTCATTGAGTTGAGTCGGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73065322 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
73065350 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73065415 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
73065428 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:73072548 original size:47 final size:45
Alignment explanation
Indices: 73072453--73072616 Score: 163
Period size: 46 Copynumber: 3.5 Consensus size: 45
73072443 TGTGTGAGCT
*
73072453 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACGA-GAA-CC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC--T-GGATGAAGCC
*
73072499 AGTGTAAGAACATGTCTGGGACATGCATCAGCCACTGGATGTAAGCC
1 AGTGTAAG-ACATGTCTGGGACATGCATCGGCCACTGGATG-AAGCC
* * * * *
73072546 AGTGTAAGACATGTCTGAGACATCCGTCGGCTAC-GAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACTG-GATGA-AGCC
*
73072592 AGTGTAAGACCATGTTTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
73072617 GCTTCGACTT
Statistics
Matches: 100, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
44 2 0.02
45 4 0.04
46 47 0.47
47 47 0.47
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACTGGATGAAGCC
Found at i:73073853 original size:21 final size:21
Alignment explanation
Indices: 73073813--73073851 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
73073803 GTCGAAATGG
*
73073813 TCACATGGGCGTGTTGCCCTT
1 TCACACGGGCGTGTTGCCCTT
73073834 TCACACGGGCGTG-TGCCC
1 TCACACGGGCGTGTTGCCC
73073852 CTATGTCAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.33, G:0.31, T:0.26
Consensus pattern (21 bp):
TCACACGGGCGTGTTGCCCTT
Found at i:73079284 original size:34 final size:33
Alignment explanation
Indices: 73079204--73079344 Score: 101
Period size: 32 Copynumber: 4.3 Consensus size: 33
73079194 ATATAATTAT
* * ***
73079204 TTTTATATTAAATTATATTAAAATATTTTTGTA
1 TTTTATTTTAAATTATATTAAAAAATTTAAATA
* *
73079237 -TTCATATTT-AATTATATTAAAAAATTTAAAATG
1 TTTTAT-TTTAAATTATATTAAAAAATTT-AAATA
*** *
73079270 TTTTATTTTAAATTATATTTTGAAA-TGAAATA
1 TTTTATTTTAAATTATATTAAAAAATTTAAATA
* *
73079302 TTTTATATTGAATTATA-TAAAAATATTTCAAATA
1 TTTTATTTTAAATTATATTAAAAA-ATTT-AAATA
73079336 TTTTATTTT
1 TTTTATTTT
73079345 TATATTTTCT
Statistics
Matches: 81, Mismatches: 20, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
31 3 0.04
32 41 0.51
33 8 0.10
34 29 0.36
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (33 bp):
TTTTATTTTAAATTATATTAAAAAATTTAAATA
Found at i:73085125 original size:29 final size:29
Alignment explanation
Indices: 73085088--73085176 Score: 84
Period size: 29 Copynumber: 3.3 Consensus size: 29
73085078 CTCTCTCTAT
73085088 ATAAATATTCTACATACATTCCATATATG
1 ATAAATATTCTACATACATTCCATATATG
* *
73085117 ATAATTATTCT--AT--ATT-C-TAAAT-
1 ATAAATATTCTACATACATTCCATATATG
* *
73085139 ATAAATATTCTACACACATTCTATATATG
1 ATAAATATTCTACATACATTCCATATATG
*
73085168 ATAATTATT
1 ATAAATATT
73085177 TTTTTATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 14
0.69 0.10 0.21
Matches are distributed among these distances:
22 10 0.22
23 4 0.09
24 2 0.04
25 3 0.07
26 3 0.07
27 2 0.04
28 4 0.09
29 18 0.39
ACGTcount: A:0.42, C:0.13, G:0.02, T:0.43
Consensus pattern (29 bp):
ATAAATATTCTACATACATTCCATATATG
Found at i:73086025 original size:3 final size:3
Alignment explanation
Indices: 73086017--73086042 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
73086007 AACAGACATA
73086017 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
73086043 ACTGCGTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:73088323 original size:25 final size:25
Alignment explanation
Indices: 73088274--73088396 Score: 101
Period size: 25 Copynumber: 5.0 Consensus size: 25
73088264 GTCATTAGGG
* *
73088274 TTACCGAT-TTCAGCTCTTATAAGC
1 TTACCGATATTCAGCTCGTATGAGC
*
73088298 TTACCGATACTCAGCTCGTATGAGC
1 TTACCGATATTCAGCTCGTATGAGC
* * * * *
73088323 TTA-CTATTATTCAGCTTGGAGGAAC
1 TTACCGA-TATTCAGCTCGTATGAGC
* * *
73088348 TTACCGTTATTCAGCTCGGAGGAGC
1 TTACCGATATTCAGCTCGTATGAGC
73088373 TTACCG-T-TTACAGCTCGTATGAGC
1 TTACCGATATT-CAGCTCGTATGAGC
73088397 ATAATTGTAC
Statistics
Matches: 80, Mismatches: 15, Indels: 8
0.78 0.15 0.08
Matches are distributed among these distances:
23 2 0.03
24 23 0.29
25 54 0.68
26 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (25 bp):
TTACCGATATTCAGCTCGTATGAGC
Found at i:73091158 original size:24 final size:24
Alignment explanation
Indices: 73091126--73091175 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
73091116 ACTCATTATA
73091126 GATAATGCATTGATATATATTGAT
1 GATAATGCATTGATATATATTGAT
*
73091150 GATAATGCATTGATGTATATTGAT
1 GATAATGCATTGATATATATTGAT
73091174 GA
1 GA
73091176 CATCCTTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.20, T:0.40
Consensus pattern (24 bp):
GATAATGCATTGATATATATTGAT
Found at i:73091163 original size:14 final size:14
Alignment explanation
Indices: 73091126--73091164 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
73091116 ACTCATTATA
73091126 GATAATGCATTGAT
1 GATAATGCATTGAT
73091140 -AT-AT--ATTGAT
1 GATAATGCATTGAT
73091150 GATAATGCATTGAT
1 GATAATGCATTGAT
73091164 G
1 G
73091165 TATATTGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 8
0.72 0.00 0.28
Matches are distributed among these distances:
10 6 0.29
11 2 0.10
12 4 0.19
13 2 0.10
14 7 0.33
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (14 bp):
GATAATGCATTGAT
Found at i:73092748 original size:29 final size:30
Alignment explanation
Indices: 73092690--73092761 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 30
73092680 AAATTTCAAA
* *
73092690 AAAAATTTACATCTTAGACCCTAAACTTTCCT
1 AAAAA-TTACATTTTAGACCCCAAACTTT-CT
* *
73092722 -TAAATTACATTTTA-ACCCCAAATTTTCT
1 AAAAATTACATTTTAGACCCCAAACTTTCT
73092750 AAAAATTACATT
1 AAAAATTACATT
73092762 GAGCCCCAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
28 2 0.06
29 20 0.59
30 9 0.26
31 3 0.09
ACGTcount: A:0.40, C:0.21, G:0.01, T:0.38
Consensus pattern (30 bp):
AAAAATTACATTTTAGACCCCAAACTTTCT
Found at i:73093320 original size:18 final size:19
Alignment explanation
Indices: 73093297--73093337 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
73093287 TGTTTTCATA
*
73093297 TTTTCTTTCCTT-GGTTTT
1 TTTTCTTTCCTTAGATTTT
*
73093315 TTTTCTTTCTTTAGATTTT
1 TTTTCTTTCCTTAGATTTT
73093334 TTTT
1 TTTT
73093338 ATTTTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.05, C:0.12, G:0.07, T:0.76
Consensus pattern (19 bp):
TTTTCTTTCCTTAGATTTT
Found at i:73106400 original size:77 final size:75
Alignment explanation
Indices: 73106222--73107001 Score: 946
Period size: 75 Copynumber: 10.1 Consensus size: 75
73106212 TTTATTTATG
* * ** *
73106222 TTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
*
73106287 AATTTCTGTT
66 AATTTCTGTC
*** ** *
73106297 TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACACGCCGAGATATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACACGTTGAGGTATTT
* *
73106360 TCAATTTCTATT
64 TCAATTTCTGTC
73106372 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
73106437 AATTTCTGTTCAATTTATGTC
66 AA----T-TTC------TGTC
** *
73106458 TTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
73106523 AATTTCT-TCC
66 AATTTCTGT-C
**
73106533 TTTCAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTT
1 TTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTT
73106598 TCAATTTCTGTC
64 TCAATTTCTGTC
*
73106610 TTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTT-
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
*
73106674 AATTTTTGTC
66 AATTTCTGTC
73106684 TTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
*
73106748 AATTTTTGTC
66 AATTTCTGTC
**
73106758 TTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
73106823 AATTTCTGTC
66 AATTTCTGTC
* * *
73106833 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGTTGAGGTATT
* *
73106897 TTTAATTTCT-AC
63 TTCAATTTCTGTC
* * * *
73106909 TTTTCAAAAAAATCAATCAACTCATATTGCGAGAGGTGAGTAGAACCTCAA-ATCACGCCCTAAG
1 -TTTC--AAAAA--AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA-CACG--TTGAG
* *
73106973 GTATTTTCAATTTCTATT
58 GTATTTTCAATTTCTGTC
73106991 TTTCAAAAAAA
1 TTTCAAAAAAA
73107002 AATAAAAAAA
Statistics
Matches: 628, Mismatches: 43, Indels: 66
0.85 0.06 0.09
Matches are distributed among these distances:
73 97 0.15
74 27 0.04
75 221 0.35
76 1 0.00
77 138 0.22
78 2 0.00
79 14 0.02
80 3 0.00
81 58 0.09
82 1 0.00
86 66 0.11
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (75 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
AATTTCTGTC
Found at i:73106758 original size:148 final size:150
Alignment explanation
Indices: 73106222--73107001 Score: 928
Period size: 148 Copynumber: 5.1 Consensus size: 150
73106212 TTTATTTATG
* * ** *
73106222 TTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* ** *** *
73106287 AATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACACGC
66 AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGT
* * * *
73106350 CGAGATATTTTCAATTTCTATT
129 TGAGGTATTTTCAATTTCTGTC
73106372 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
73106437 AATTTCTGTTCAATTTATGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
66 AA----T-TTC------TGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
*
73106502 AAGACACGTTAAGGTATTTTCAATTTCT-TCC
120 AAGACACGTTGAGGTATTTTCAATTTCTGT-C
**
73106533 TTTCAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTT
1 TTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTT
* **
73106598 TCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACACGT
64 TCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
*
73106663 TGAGGTATTTT-AATTTTTGTC
129 TGAGGTATTTTCAATTTCTGTC
73106684 TTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
*
73106748 AATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTG
66 AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTG
73106813 AGGTATTTTCAATTTCTGTC
131 AGGTATTTTCAATTTCTGTC
* * *
73106833 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGTTGAGGTATT
* * ** * *
73106897 TTTAATTTCT-ACTTTTCAAAAAAATCAATCAACTCATATTGCGAGAGGTGAGTAGAACCTCAA-
63 TTCAATTTCTGTC-TTTC--AAAAA--AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
* * * *
73106960 ATCACGCCCTAAGGTATTTTCAATTTCTATT
123 A-CACG--TTGAGGTATTTTCAATTTCTGTC
73106991 TTTCAAAAAAA
1 TTTCAAAAAAA
73107002 AATAAAAAAA
Statistics
Matches: 556, Mismatches: 44, Indels: 52
0.85 0.07 0.08
Matches are distributed among these distances:
148 129 0.23
149 13 0.02
150 102 0.18
151 11 0.02
152 90 0.16
154 6 0.01
155 4 0.01
156 37 0.07
158 33 0.06
159 1 0.00
160 1 0.00
161 32 0.06
163 97 0.17
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (150 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTG
AGGTATTTTCAATTTCTGTC
Found at i:73107406 original size:29 final size:31
Alignment explanation
Indices: 73107348--73107420 Score: 89
Period size: 29 Copynumber: 2.4 Consensus size: 31
73107338 AAATTTCAAA
*
73107348 AAAAATTACATCTTAGACCCCTAAACTTTCCT
1 AAAAATTACATTTTAGACCCCTAAACTTT-CT
* *
73107380 -TAAATTACATTTTA-A-CCCTAAATTTTCT
1 AAAAATTACATTTTAGACCCCTAAACTTTCT
73107408 AAAAATTACATTT
1 AAAAATTACATTT
73107421 AGCCCCAGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 2 0.06
29 21 0.58
30 1 0.03
31 12 0.33
ACGTcount: A:0.40, C:0.21, G:0.01, T:0.38
Consensus pattern (31 bp):
AAAAATTACATTTTAGACCCCTAAACTTTCT
Found at i:73107899 original size:20 final size:21
Alignment explanation
Indices: 73107874--73107916 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
73107864 TGTTTTCATA
*
73107874 TTTTCTTTCCTT-GGTTTTTT
1 TTTTCTTTCCTTAGATTTTTT
*
73107894 TTTTCTTTCTTTAGATTTTTT
1 TTTTCTTTCCTTAGATTTTTT
73107915 TT
1 TT
73107917 ATTTTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.05, C:0.12, G:0.07, T:0.77
Consensus pattern (21 bp):
TTTTCTTTCCTTAGATTTTTT
Found at i:73108789 original size:18 final size:19
Alignment explanation
Indices: 73108763--73108798 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
73108753 TTCTTTTCTC
*
73108763 ATTATTTATTTT-AAATTA
1 ATTAATTATTTTGAAATTA
73108781 ATTAATTATTTTGAAATT
1 ATTAATTATTTTGAAATT
73108799 TGTTTTACGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (19 bp):
ATTAATTATTTTGAAATTA
Found at i:73109820 original size:18 final size:18
Alignment explanation
Indices: 73109797--73109850 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
73109787 CCACCACCAA
73109797 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
73109815 CT-C-C-A-CCAC-C-TA
1 CTCCACTAGCCACACTTG
73109827 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
73109845 CTCCAC
1 CTCCAC
73109851 CACCTACTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 3 0.11
13 2 0.07
14 5 0.18
15 2 0.07
16 5 0.18
17 2 0.07
18 9 0.32
ACGTcount: A:0.22, C:0.50, G:0.07, T:0.20
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:73109823 original size:30 final size:30
Alignment explanation
Indices: 73109787--73109885 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
73109777 CTAGCCTTTG
73109787 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
73109817 CCACCACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
73109847 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
73109877 CCACCACCA
1 CCACCACCA
73109886 CTTGCACCTA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 66 1.00
ACGTcount: A:0.25, C:0.51, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Done.