Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 22 of 344
Found at i:7711860 original size:54 final size:54
Alignment explanation
Indices: 7711678--7712170 Score: 753
Period size: 54 Copynumber: 9.0 Consensus size: 54
7711668 GTGAGCCAAT
* *
7711678 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAAAAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--AAAAG
*
7711733 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTGGAAAAAC--AAA--AAAAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAG
*
7711783 GCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAACAGAAATTAAAAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAG
*
7711837 GCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAACAGAAATTAAAAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAG
7711891 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAATTAAAAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG------AAATTAAAAG
*
7711951 GCTCAACTCACCTCTCGCAATATGAGTTAGTTTTTTTGAAAAACAGAAATTAAAAG
1 GCTCAACTCACCTCTCGCAATATGAGTT-G-ATTTTTGAAAAACAGAAATTAAAAG
7712007 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAG
* *
7712061 GCTTAACTCACCTCTCGCAATATGAGTTGGTTTTTTTGAAAAACAGAAATTAAAAG
1 GCTCAACTCACCTCTCGCAATATGAGTT-G-ATTTTTGAAAAACAGAAATTAAAAG
*
7712117 GCTCAACTCACCTCTCGCAATATGAGTTGATTATTGAAAAACAGAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-AAAA
7712171 AACAGAAATT
Statistics
Matches: 409, Mismatches: 13, Indels: 32
0.90 0.03 0.07
Matches are distributed among these distances:
50 45 0.11
52 3 0.01
54 173 0.42
55 41 0.10
56 94 0.23
60 38 0.09
61 1 0.00
62 14 0.03
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.28
Consensus pattern (54 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAG
Found at i:7712058 original size:170 final size:164
Alignment explanation
Indices: 7711678--7712170 Score: 743
Period size: 170 Copynumber: 3.0 Consensus size: 164
7711668 GTGAGCCAAT
* *
7711678 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAAAAGGCTCAACTC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--AAAAGGCTCAACTC
*
7711742 ACCTCTCGCAATATGAGTT-G-ATTTTGGAAAAAC--AAA--AAAAGGCTCAACTCACCTCTCGC
64 ACCTCTCGCAATATGAGTTGGTATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGC
*
7711801 AATATGAGTTGGTTTTTGAAAAACAGAAATTAAAAG
129 AATATGAGTTGATTTTTGAAAAACAGAAATTAAAAG
*
7711837 GCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCAC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCAC
7711902 CTCTCGCAATATGAGTT-G-ATTTTTGAAAAACAGAAATTAAAATTAAAAGGCTCAACTCACCTC
66 CTCTCGCAATATGAGTTGGTATTTTTGAAAAACAG------AAATTAAAAGGCTCAACTCACCTC
*
7711965 TCGCAATATGAGTTAGTTTTTTTGAAAAACAGAAATTAAAAG
125 TCGCAATATGAGTT-G-ATTTTTGAAAAACAGAAATTAAAAG
*
7712007 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTTAACTCAC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCAC
*
7712072 CTCTCGCAATATGAGTTGGTTTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAA
66 CTCTCGCAATATGAGTTGGTATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAA
*
7712137 TATGAGTTGATTATTGAAAAACAGAAATTGAAAA
131 TATGAGTTGATTTTTGAAAAACAGAAATT-AAAA
7712171 AACAGAAATT
Statistics
Matches: 308, Mismatches: 10, Indels: 26
0.90 0.03 0.08
Matches are distributed among these distances:
158 46 0.15
159 34 0.11
160 11 0.04
164 18 0.06
165 5 0.02
166 41 0.13
168 33 0.11
169 1 0.00
170 104 0.34
171 1 0.00
172 14 0.05
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.28
Consensus pattern (164 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCAC
CTCTCGCAATATGAGTTGGTATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTGAAAAACAGAAATTAAAAG
Found at i:7712129 original size:110 final size:109
Alignment explanation
Indices: 7711678--7712170 Score: 766
Period size: 110 Copynumber: 4.5 Consensus size: 109
7711668 GTGAGCCAAT
* *
7711678 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAAAAGGCTCAACTC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--AAAAGGCTCAACTC
* *
7711742 ACCTCTCGCAATATGAGTT-GATTTTGGAAAAAC--AAA--AAAAG
64 ACCTCTCGCAATATGAGTTGGTTTTTTGAAAAACAGAAATTAAAAG
*
7711783 GCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCAC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCAC
7711848 CTCTCGCAATATGAGTTGG-TTTTTGAAAAACAGAAATTAAAAG
66 CTCTCGCAATATGAGTTGGTTTTTTGAAAAACAGAAATTAAAAG
7711891 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAATTAAAAGGCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG------AAATTAAAAGGCTCA
*
7711956 ACTCACCTCTCGCAATATGAGTTAGTTTTTTTGAAAAACAGAAATTAAAAG
60 ACTCACCTCTCGCAATATGAGTT-GGTTTTTTGAAAAACAGAAATTAAAAG
*
7712007 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTTAACTCAC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCAC
7712072 CTCTCGCAATATGAGTTGGTTTTTTTGAAAAACAGAAATTAAAAG
66 CTCTCGCAATATGAGTTGG-TTTTTTGAAAAACAGAAATTAAAAG
*
7712117 GCTCAACTCACCTCTCGCAATATGAGTTGATTATTGAAAAACAGAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-AAAA
7712171 AACAGAAATT
Statistics
Matches: 363, Mismatches: 9, Indels: 26
0.91 0.02 0.07
Matches are distributed among these distances:
104 44 0.12
105 35 0.10
106 14 0.04
108 48 0.13
109 1 0.00
110 110 0.30
111 4 0.01
114 38 0.10
115 1 0.00
116 68 0.19
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.28
Consensus pattern (109 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCAC
CTCTCGCAATATGAGTTGGTTTTTTGAAAAACAGAAATTAAAAG
Found at i:7712173 original size:15 final size:14
Alignment explanation
Indices: 7712149--7712199 Score: 84
Period size: 14 Copynumber: 3.6 Consensus size: 14
7712139 TGAGTTGATT
7712149 ATTGAAAAACAGAA
1 ATTGAAAAACAGAA
7712163 ATTGAAAAAACAGAA
1 ATTG-AAAAACAGAA
*
7712178 ATTGAAAAGCAGAA
1 ATTGAAAAACAGAA
7712192 ATTGAAAA
1 ATTGAAAA
7712200 TACCTCAGCG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
14 21 0.60
15 14 0.40
ACGTcount: A:0.63, C:0.06, G:0.16, T:0.16
Consensus pattern (14 bp):
ATTGAAAAACAGAA
Found at i:7712384 original size:87 final size:85
Alignment explanation
Indices: 7712169--7712518 Score: 384
Period size: 87 Copynumber: 4.0 Consensus size: 85
7712159 AGAAATTGAA
*
7712169 AAAACAGAAATT-GAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTC
1 AAAACAG-AATTAGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTC
* *
7712233 TTGCAATATGAGCTGATTTTTTTTTG
65 TCGCAATATGAGTTGA-----TTTTG
* * * * *
7712259 AAACACAGAAATTAAAAAAATAGAATTTGAAAAGACCTCAGCGTGTGGCCC-GAGACTCAACTCA
1 AAA-ACAG-AATTAGAAAAACAGAAATTGAAAATACCTCAGC--GT-GCCCTGAGGCTCAACTCA
7712323 CCTCTCGCAATATGAGTTGA-TTTG
61 CCTCTCGCAATATGAGTTGATTTTG
* * * *
7712347 AAAAGCAGAATTAGTAAAGCAGAAATTGAAAATACCTCAACGTGCCCTAAGGCTCAACTCACCTC
1 AAAA-CAGAATTAGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTC
7712412 TCGCAATATGAGTTGATTTTG
65 TCGCAATATGAGTTGATTTTG
* * * **
7712433 GAAACATGAATT-GAAAAATAAAAATTGAAAATACCTCAGCATGTGAGCTGAGGCTCAACTCACC
1 AAAACA-GAATTAGAAAAACAGAAATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACC
7712497 TCTCGCAATATGAGTTGATTTT
63 TCTCGCAATATGAGTTGATTTT
7712519 TTTGAAAAGC
Statistics
Matches: 223, Mismatches: 26, Indels: 25
0.81 0.09 0.09
Matches are distributed among these distances:
84 4 0.02
85 58 0.26
86 12 0.05
87 68 0.30
88 10 0.04
90 3 0.01
91 9 0.04
92 23 0.10
94 32 0.14
95 4 0.02
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (85 bp):
AAAACAGAATTAGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTG
Found at i:7712733 original size:73 final size:74
Alignment explanation
Indices: 7712443--7714089 Score: 1059
Period size: 73 Copynumber: 21.3 Consensus size: 74
7712433 GAAACATGAA
* * **
7712443 TTGAAAAATAAAAATTGAAAATACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
7712508 GAGTTGATTTTT
64 GAGTTGA-TTTT
* *
7712520 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7712585 GTTGA-TTT
66 GTTGATTTT
* * * * *
7712593 TTGAAAAGCATAAACGGAAATTGAAAATACCTCGGCATGCCCTGAGGCTCAACTCACCTCTCCCA
1 TTG---A--A-AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
7712658 ATATGAGTTGA-TTT
60 ATATGAGTTGATTTT
* **
7712672 TTGAAAAATAGAAATTGAAGTTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7712737 GTTGAATTTTTTT
66 GTTG-A---TTTT
* ** * *** * * * *
7712750 TTGAAAGACAGAAATTGAAAAATAGAAATTGAAAATACCTCAGCATGTGAGCTGATGCTCAACTC
1 TTGAAAAACAGAAATTG-AAAAT---ACCTCAGCGT--GTC--C-TGAG-GCTCA-ACTC-----
7712815 ACCTCTCGCAATATGAGTTGA-TTT
50 ACCTCTCGCAATATGAGTTGATTTT
* * * * ** * * * *
7712839 TGGAAACAGAAATTGAAGTTAGAAATTGAAAAT-A-CCTCAG-CATGTGAGC-CGAGGCTCAACT
1 TTGAAA-A-ACA--GAAATT-GAAAAT--ACCTCAGCGT--GTCCTGAG-GCTC-A-ACT-----
7712900 CACCTCTCGCAATATGAGTTGATTTTTT
49 CACCTCTCGCAATATGAGTTGA--TTTT
* * * *
7712928 TTTAAAAGCAGAAATTAAAAATACCTCAGCGTGT-CTCGAGGCTCAACTCACATCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCT-GAGGCTCAACTCACCTCTCGCAATATG
7712992 AGTTGA-TTT
65 AGTTGATTTT
*
7713001 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7713066 GTTGATTTTT
66 GTTGA-TTTT
* * * * * * * *
7713076 TTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCATCTCTCACAAA
1 TTGAAAAACAGAAATTG--AAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAAT
* *
7713141 ACGAGTT-AATTT
62 ATGAGTTGATTTT
* *
7713153 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTAACCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATAT
7713218 GAGTTGATCTTTTTTATTTTTT
64 GAGTTG---------A--TTTT
* * * *
7713240 TTGAAAGACAGAAATTGAAAAAACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7713305 GTTGA-TTT
66 GTTGATTTT
* *
7713313 TTG-AAAA-ATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
7713376 ATTGATTTTT
66 GTTGA-TTTT
* * * * *
7713386 TTGAAAAACAGAAATTGAAGAACAGAAATGGAAAACATC-TCAGCGTCTTGAGGTTCAACTCACC
1 TTGAAAAACAGAAATT---G---A-AAAT-----ACCTCAGC-GTGTCCTGAGGCTCAACTCACC
7713450 TCTCGCAATATGAGTTGATTTTTT
53 TCTCGCAATATGAGTTGA--TTTT
* * *
7713474 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7713539 GTTGATTTT
66 GTTGATTTT
* * * * *
7713548 TT-ACAAACAAAAATTGAAATTATCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7713612 GTTGATTTTTT
66 GTTGA--TTTT
* * * *
7713623 TTGAAAGATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7713688 GTTGATTTTTTT
66 GTTGA---TTTT
*
7713700 TTGAAAAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATGTG
1 TTGAAAAACAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
** **
7713764 AGCAGA--AA
65 AGTTGATTTT
** ** * * * * * * * *
7713772 TTGAAAATACCTCAACGTG----T--CT-TGAG-G--CTCA-ACTCACCTCTCGCAATAT-G-AG
1 TTGAAAA-A-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC-C--TCTCGCAA
* ***
7713824 T-TGATTTTTGAAAAATAAA
61 TATGA--GTTG----ATTTT
* * *
7713843 TTGACAAAC-GAAAATTGAAAATACCTCAAC--GTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAG-AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
7713905 AGTTGATTTTT
65 AGTTGA-TTTT
* *
7713916 TTGATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TTGA---------AAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
7713981 CGCAATATGAGTTTA-TTT
56 CGCAATATGAGTTGATTTT
* *
7713999 TTG-AAAA-ATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7714062 GTTGA-TTT
66 GTTGATTTT
*
7714070 TTGACAAACAGAAATTGAAA
1 TTGAAAAACAGAAATTGAAA
7714090 CATCAAAATA
Statistics
Matches: 1255, Mismatches: 182, Indels: 270
0.74 0.11 0.16
Matches are distributed among these distances:
63 11 0.01
64 6 0.00
65 2 0.00
66 3 0.00
67 2 0.00
68 2 0.00
69 6 0.00
70 2 0.00
71 125 0.10
72 15 0.01
73 220 0.18
74 18 0.01
75 116 0.09
76 134 0.11
77 129 0.10
78 32 0.03
79 95 0.08
81 7 0.01
82 18 0.01
83 31 0.02
84 9 0.01
85 78 0.06
86 34 0.03
87 75 0.06
88 25 0.02
89 19 0.02
90 1 0.00
91 4 0.00
92 5 0.00
93 10 0.01
94 21 0.02
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30
Consensus pattern (74 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:7712769 original size:14 final size:14
Alignment explanation
Indices: 7712750--7712784 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7712740 GAATTTTTTT
*
7712750 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
*
7712764 TTGAAAAATAGAAA
1 TTGAAAAACAGAAA
7712778 TTGAAAA
1 TTGAAAA
7712785 TACCTCAGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.03, G:0.17, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:7712874 original size:86 final size:88
Alignment explanation
Indices: 7712672--7712925 Score: 345
Period size: 86 Copynumber: 2.9 Consensus size: 88
7712662 GAGTTGATTT
** **
7712672 TTGAAAAATAGAAATTGAAGTTACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAATAGAAATTGAAAATACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATAT
7712735 GAGTTGAATTTTTTTTTGAAAGACAGAAA
66 GAGTTG-A-----TTTTGAAAGACAGAAA
*
7712764 TTGAAAAATAGAAATTGAAAATACCTCAGCATGTGAGCTGATGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAATAGAAATTGAAAATACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATAT
*
7712829 GAGTTGATTTTGGAA-ACAGAAA
66 GAGTTGATTTTGAAAGACAGAAA
** *
7712851 TTG-AAGTTAGAAATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAATAGAAATTGAAAATACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATAT
7712915 GAGTTGATTTT
66 GAGTTGATTTT
7712926 TTTTTAAAAG
Statistics
Matches: 150, Mismatches: 10, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
86 68 0.45
87 10 0.07
88 7 0.05
92 28 0.19
93 1 0.01
94 36 0.24
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (88 bp):
TTGAAAAATAGAAATTGAAAATACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTGAAAGACAGAAA
Found at i:7712987 original size:76 final size:76
Alignment explanation
Indices: 7712859--7713765 Score: 931
Period size: 76 Copynumber: 11.8 Consensus size: 76
7712849 AATTGAAGTT
* ** *
7712859 AGAAATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 AGAAATTGAAAATACCTCAGCGTGT-CTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
*
7712924 TTTTTTTAAAAGC
64 TTTTTTTAAAAAC
* *
7712937 AGAAATTAAAAATACCTCAGCGTGTCTC-GAGGCTCAACTCACATCTCGCAATATGAGTTGA--T
1 AGAAATTGAAAATACCTCAGCGTGTCTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
7712999 TTTTGAAAAAC
66 TTTTTAAAAAC
*
7713010 AGAAATTGAAAATACCTCAGCATGTC-CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AGAAATTGAAAATACCTCAGCGTGTCTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
7713074 TTTTGAAAAAT
66 TTTTTAAAAAC
* * * * * * * *
7713085 ATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCATCTCTCACAAAACGAGTT-A
1 AGAAATTG--AAAATACCTCAGCGTGT-CTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * *
7713149 -ATTTTTGACAAAC
63 TTTTTTTTAAAAAC
*
7713162 AGAAATTGAAATTACCTCAGCGTGTAAC-CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AGAAATTGAAAATACCTCAGCGTGT--CTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG--
*
7713226 CTTTTTTATTTTTTTTGAAAGAC
62 -------ATTTTTTTT-AAAAAC
* *
7713249 AGAAATTGAAAAAACCTCAACGTGTCT-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---
1 AGAAATTGAAAATACCTCAGCGTGTCTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
7713310 TTTTTGAAAA-
66 TTTTTAAAAAC
* * *
7713320 ATAAATTGAAAATACCTCAGCGTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGATTT
1 AGAAATTGAAAATACCTCAGCGTGTCTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
7713384 TTTTGAAAAAC
66 TTTTTAAAAAC
* * * *
7713395 AGAAATTGAAGAACAGAAATGGAAAACATC-TCAGCGTCT-TGAGGTTCAACTCACCTCTCGCAA
1 AGAAATT---G---A-AAAT-----ACCTCAGC-GTGTCTCTGAGGCTCAACTCACCTCTCGCAA
*
7713458 TATGAGTTGATTTTTTTTGAAAGAC
53 TATGAGTTGATTTTTTTT-AAAAAC
*
7713483 AGAAATTGAAAATACCTCAACGTGTCT-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--T
1 AGAAATTGAAAATACCTCAGCGTGTCTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
7713545 TTTTTACAAAC
66 TTTTTAAAAAC
* * * *
7713556 AAAAATTGAAATTATCTCAACGTGTC-CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AGAAATTGAAAATACCTCAGCGTGTCTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
7713620 TTTTTGAAAGAT
66 TTTTT-AAAAAC
*
7713632 AGAAATTGAAAATACCTCAACGTGTCT-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AGAAATTGAAAATACCTCAGCGTGTCTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
7713696 TTTTTTGAAAAAC
65 TTTTTT-AAAAAC
*
7713709 AGAAATT-AAAATTACCTCAGCGTGTC-CTGAGGCTCAACTCACCTCTCGCAATGTGAG
1 AGAAATTGAAAA-TACCTCAGCGTGTCTCTGAGGCTCAACTCACCTCTCGCAATATGAG
7713766 CAGAAATTGA
Statistics
Matches: 702, Mismatches: 77, Indels: 101
0.80 0.09 0.11
Matches are distributed among these distances:
70 1 0.00
71 54 0.08
72 4 0.01
73 132 0.19
74 14 0.02
75 73 0.10
76 139 0.20
77 96 0.14
78 25 0.04
79 28 0.04
81 5 0.01
82 5 0.01
85 36 0.05
86 6 0.01
87 71 0.10
88 13 0.02
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (76 bp):
AGAAATTGAAAATACCTCAGCGTGTCTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTTTAAAAAC
Found at i:7713301 original size:85 final size:85
Alignment explanation
Indices: 7713150--7713314 Score: 253
Period size: 85 Copynumber: 1.9 Consensus size: 85
7713140 AACGAGTTAA
** *
7713150 TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTAACCTGAGGCTCAACTCACCTCTCGCAA
1 TTTTTGACAAACAGAAATTGAAAAAACCTCAACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAA
7713215 TATGAGTTGATCTTTTTTATTT
65 TATGAGTTGAT-TTTTTTATTT
*
7713237 TTTTTGA-AAGACAGAAATTGAAAAAACCTCAACGTGT-CTTGAGGCTCAACTCACCTCTCGCAA
1 TTTTTGACAA-ACAGAAATTGAAAAAACCTCAACGTGTACCTGAGGCTCAACTCACCTCTCGCAA
7713300 TATGAGTTGATTTTT
65 TATGAGTTGATTTTT
7713315 GAAAAATAAA
Statistics
Matches: 73, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
84 4 0.05
85 36 0.49
86 2 0.03
87 31 0.42
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (85 bp):
TTTTTGACAAACAGAAATTGAAAAAACCTCAACGTGTACCTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTTTTATTT
Found at i:7713331 original size:71 final size:73
Alignment explanation
Indices: 7713236--7714089 Score: 649
Period size: 71 Copynumber: 11.3 Consensus size: 73
7713226 CTTTTTTATT
*
7713236 TTTTTTGAAAGACAGAAATTGAAAAAACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
1 TTTTTTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
7713301 ATGAGTTGA
65 ATGAGTTGA
* * * *
7713310 -TTTTTGAAAA-ATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
1 TTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
*
7713373 TGAATTGA
66 TGAGTTGA
* * * *
7713381 TTTTTTTGAAAAACAGAAATTGAAGAACAGAAATGGAAAACATC-TCAGCGTCTTGAGGTTCAAC
1 -TTTTTTG-AAAACAGAAATT---G---A-AAAT-----ACCTCAAC-GTGTCTTGAGGCTCAAC
7713445 TCACCTCTCGCAATATGAGTTGA
51 TCACCTCTCGCAATATGAGTTGA
7713468 TTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCA
1 --TTTTTTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCA
7713533 ATATGAGTTGA
63 ATATGAGTTGA
* * * *
7713544 TTTTTT-ACAAACAAAAATTGAAATTATCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
1 TTTTTTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
7713608 ATGAGTTGA
65 ATGAGTTGA
*
7713617 TTTTTTTTGAAAGATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCA
1 --TTTTTTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCA
7713682 ATATGAGTTGA
63 ATATGAGTTGA
* *
7713693 TTTTTTTTTGAAAAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
1 ---TTTTTTG-AAAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
* **
7713757 CAATGTGAGCAGA
61 CAATATGAGTTGA
** * ** * ** ** ** * * * * *
7713770 --AATTG-AAA-A-TACCTCAACGTGTCTTGA-G-G-C-TCA-ACTCACCTCTCGCAATAT-G-A
1 TTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAC-C--TCTCGCA
* *
7713823 GT-TGATTTTTGAAAAA
63 ATATGA--GTTG----A
***
7713839 TAAATTGACAAAC-GAAAATTGAAAATACCTCAAC--GTCTTGAGGCTCAACTCACCTCTCGCAA
1 TTTTTTGA-AAACAG-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAA
7713901 TATGAGTTGATTTTTTTGA
64 TATGA---G------TTGA
7713920 TTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCA
1 --TTTTTTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCA
*
7713985 ATATGAGTTTA
63 ATATGAGTTGA
* * * *
7713996 -TTTTTGAAAA-ATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
1 TTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
7714059 TGAGTTGA
66 TGAGTTGA
7714067 -TTTTTGACAAACAGAAATTGAAA
1 TTTTTTGA-AAACAGAAATTGAAA
7714090 CATCAAAATA
Statistics
Matches: 632, Mismatches: 81, Indels: 135
0.75 0.10 0.16
Matches are distributed among these distances:
63 11 0.02
64 5 0.01
65 3 0.00
66 3 0.00
67 1 0.00
68 5 0.01
69 4 0.01
70 3 0.00
71 123 0.19
72 8 0.01
73 97 0.15
74 12 0.02
75 25 0.04
76 110 0.17
77 67 0.11
78 15 0.02
79 2 0.00
81 6 0.01
82 8 0.01
83 26 0.04
84 1 0.00
85 37 0.06
86 1 0.00
87 42 0.07
88 17 0.03
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (73 bp):
TTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGA
Found at i:7713403 original size:14 final size:14
Alignment explanation
Indices: 7713386--7713420 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7713376 ATTGATTTTT
7713386 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
7713400 TTGAAGAACAGAAA
1 TTGAAAAACAGAAA
*
7713414 TGGAAAA
1 TTGAAAA
7713421 CATCTCAGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.60, C:0.06, G:0.20, T:0.14
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:7713776 original size:149 final size:150
Alignment explanation
Indices: 7712889--7714089 Score: 1188
Period size: 149 Copynumber: 7.9 Consensus size: 150
7712879 CATGTGAGCC
* *
7712889 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTT-AAAAGCAGAAATTAAAAATACC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAACAGAAATTGAAAATACC
* *
7712953 TCAGCGTGT-CTCGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT
66 TCAGCGTGTCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGACAGAAATT
* * *
7713017 GAAAATACCTCAGCATGTCCT
130 GAAAATACCTCAACGTGTCTT
* *
7713038 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAAATATAAATTGAAAAAATA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAACAGAAATTG--AAAATA
* * * * * * * *
7713101 CCTCAGTGTGTGATCTGAAGCTCAACTCATCTCTCACAAAACGAGTTAATTTTTGACAA-ACAGA
64 CCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAGACAGA
* * *
7713165 AATTGAAATTACCTCAGCGTGTAACCT
126 AATTGAAAATACCTCAACGTGT--CTT
*
7713192 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTTTTATTTTTTTTGAAAGACAGAAATTG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-------T-TTTTTTTTGAAAAACAGAAATTG
* * *
7713257 AAAAAACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-A-
58 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGAC
* * * *
7713320 ATAAATTGAAAATACCTCAGCGTGCCCT
123 AGAAATTGAAAATACCTCAACGTGTCTT
*
7713348 GAGGCTCAACTCACCTCTCGCAATATGAATTGA--TTTTTTTGAAAAACAGAAATTGAAGAACAG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAACAGAAATT---G---A-
* *
7713411 AAATGGAAAACATCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
59 AAAT-----AC--CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTT
7713474 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTT
114 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTT
* * * *
7713511 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTT-ACAAACAAAAATTGAAATTATC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAACAGAAATTGAAAATACC
* *
7713572 TCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGATAGAAA
66 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAAGACAGAAA
7713637 TTGAAAATACCTCAACGTGTCTT
128 TTGAAAATACCTCAACGTGTCTT
7713660 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAACAGAAATT-AAAATTAC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAACAGAAATTGAAAA-TAC
7713724 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC---A--A--TG-----TG--AG-CAGAAATT
65 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGACAGAAATT
7713774 GAAAATACCTCAACGTGTCTT
130 GAAAATACCTCAACGTGTCTT
* *
7713795 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTGACAAAC-GAAAATT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT------T--TTTGAAAAACAG-AAATT
* *
7713859 GAAAATACCTCAAC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATT
57 GAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA---G------TTGA--
7713922 TTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTT
111 -TTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTT
* *
7713963 GAGGCTCAACTCACCTCTCGCAATATGA---G-TTTATTTTTG-AAAA-ATAAATTGAAAATACC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAACAGAAATTGAAAATACC
*
7714022 TCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAA-ACAGAAATT
66 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAGACAGAAATT
7714086 GAAA
130 GAAA
7714090 CATCAAAATA
Statistics
Matches: 900, Mismatches: 66, Indels: 177
0.79 0.06 0.15
Matches are distributed among these distances:
135 66 0.07
136 2 0.00
138 2 0.00
141 26 0.03
142 1 0.00
143 21 0.02
144 25 0.03
145 2 0.00
146 23 0.03
147 16 0.02
148 11 0.01
149 146 0.16
150 17 0.02
152 68 0.08
153 54 0.06
154 57 0.06
155 4 0.00
156 69 0.08
157 2 0.00
158 63 0.07
159 3 0.00
160 40 0.04
161 20 0.02
162 21 0.02
163 56 0.06
164 23 0.03
165 3 0.00
167 2 0.00
168 57 0.06
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (150 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAACAGAAATTGAAAATACC
TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGACAGAAATTG
AAAATACCTCAACGTGTCTT
Found at i:7713798 original size:58 final size:58
Alignment explanation
Indices: 7713708--7713823 Score: 189
Period size: 58 Copynumber: 2.0 Consensus size: 58
7713698 TTTTGAAAAA
* *
7713708 CAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATGTGAG
1 CAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
7713766 CAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 CAGAAATT-AAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
7713824 TTGATTTTTG
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
58 50 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (58 bp):
CAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
Found at i:7714015 original size:85 final size:84
Alignment explanation
Indices: 7713766--7714017 Score: 375
Period size: 83 Copynumber: 3.0 Consensus size: 84
7713756 GCAATGTGAG
7713766 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
7713831 TTGAAAAATAAATTGACAAA
66 TTGAAAAATAAATTGA-AAA
7713851 C-GAAAATTGAAAATACCTCAAC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 CAG-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*** ** ***
7713913 TTTTTGATTTTTTTTGAAAGA
65 TTTGAAAAATAAATTGAAA-A
*
7713934 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTTATTT
1 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
7713999 TTGAAAAATAAATTGAAAA
66 TTGAAAAATAAATTGAAAA
7714018 TACCTCAGCG
Statistics
Matches: 145, Mismatches: 17, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
82 2 0.01
83 70 0.48
84 3 0.02
85 70 0.48
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.31
Consensus pattern (84 bp):
CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTGAAAAATAAATTGAAAA
Found at i:7715681 original size:4 final size:4
Alignment explanation
Indices: 7715667--7715721 Score: 66
Period size: 4 Copynumber: 14.8 Consensus size: 4
7715657 ACCTCTCCAT
7715667 TTTC TTTTC TTTC -TT- TTTC TTTC TTTC TTTC -TT- TTTC TTTC TTTC
1 TTTC -TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
7715712 TTT- TTTC TTT
1 TTTC TTTC TTT
7715722 TGAATGAATG
Statistics
Matches: 45, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
3 11 0.24
4 30 0.67
5 4 0.09
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (4 bp):
TTTC
Found at i:7715689 original size:14 final size:14
Alignment explanation
Indices: 7715667--7715721 Score: 78
Period size: 14 Copynumber: 3.9 Consensus size: 14
7715657 ACCTCTCCAT
7715667 TTTC-TTTTCTTTC
1 TTTCTTTTTCTTTC
7715680 TTT-TTCTTTCTTTC
1 TTTCTT-TTTCTTTC
7715694 TTTCTTTTTCTTTC
1 TTTCTTTTTCTTTC
7715708 TTTCTTTTTTCTTT
1 TTTC-TTTTTCTTT
7715722 TGAATGAATG
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.11
14 23 0.61
15 11 0.29
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTCTTTTTCTTTC
Found at i:7715695 original size:18 final size:18
Alignment explanation
Indices: 7715667--7715714 Score: 87
Period size: 18 Copynumber: 2.6 Consensus size: 18
7715657 ACCTCTCCAT
7715667 TTTCTTTTCTTTCTTTTTC
1 TTTC-TTTCTTTCTTTTTC
7715686 TTTCTTTCTTTCTTTTTC
1 TTTCTTTCTTTCTTTTTC
7715704 TTTCTTTCTTT
1 TTTCTTTCTTT
7715715 TTTCTTTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 25 0.86
19 4 0.14
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTCTTTCTTTCTTTTTC
Found at i:7716313 original size:1 final size:1
Alignment explanation
Indices: 7716303--7716371 Score: 66
Period size: 1 Copynumber: 69.0 Consensus size: 1
7716293 TTGATCTCTC
* * * * * * * *
7716303 TTTTTGTTTTTTGTTTTTTTTTATTTTTTTGTTTTTTGTTTTTTTTTTATTTTTTTATTTTTTTC
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7716368 TTTT
1 TTTT
7716372 CATGACTGTC
Statistics
Matches: 52, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 52 1.00
ACGTcount: A:0.04, C:0.01, G:0.06, T:0.88
Consensus pattern (1 bp):
T
Found at i:7716335 original size:25 final size:26
Alignment explanation
Indices: 7716303--7716365 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
7716293 TTGATCTCTC
7716303 TTTTTGTTTTTTG-TTTTTTTTTATT
1 TTTTTGTTTTTTGTTTTTTTTTTATT
7716328 TTTTTGTTTTTTGTTTTTTTTTTATT
1 TTTTTGTTTTTTGTTTTTTTTTTATT
*
7716354 TTTTTATTTTTT
1 TTTTTGTTTTTT
7716366 TCTTTTCATG
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
25 13 0.36
26 23 0.64
ACGTcount: A:0.05, C:0.00, G:0.06, T:0.89
Consensus pattern (26 bp):
TTTTTGTTTTTTGTTTTTTTTTTATT
Found at i:7719990 original size:17 final size:18
Alignment explanation
Indices: 7719957--7719990 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7719947 TTTTTTAGAA
*
7719957 AAACACGAAAAATTTTAG
1 AAACACGAAAAAGTTTAG
7719975 AAACACG-AAAAGTTTA
1 AAACACGAAAAAGTTTA
7719991 CAACACTAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.56, C:0.12, G:0.12, T:0.21
Consensus pattern (18 bp):
AAACACGAAAAAGTTTAG
Found at i:7720521 original size:3 final size:3
Alignment explanation
Indices: 7720513--7720540 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7720503 ACTAATTTAA
7720513 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7720541 CAAACCAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7725318 original size:29 final size:30
Alignment explanation
Indices: 7725252--7725318 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 30
7725242 ATTTAGAGTT
* *
7725252 AAAATGTAATTTAAGAAAAGTTTAAGGGTC
1 AAAATGAAATTAAAGAAAAGTTTAAGGGTC
* *
7725282 TAAGTGAAATTAAAG-AAAGTTTAAGGGTC
1 AAAATGAAATTAAAGAAAAGTTTAAGGGTC
7725311 AAAATGAA
1 AAAATGAA
7725319 TTTTTTATTT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
29 20 0.65
30 11 0.35
ACGTcount: A:0.49, C:0.03, G:0.21, T:0.27
Consensus pattern (30 bp):
AAAATGAAATTAAAGAAAAGTTTAAGGGTC
Found at i:7730426 original size:78 final size:79
Alignment explanation
Indices: 7730332--7730481 Score: 212
Period size: 78 Copynumber: 1.9 Consensus size: 79
7730322 TGGGTTAGTC
* * * * *
7730332 CAAAGACAACATAAAAAAAGGTTGGGTTAGGTCAAACATTTGCCAATGAAAAA-AAAGGTTGAGA
1 CAAAGACAACACAAAAAAAGGTTGGGTTAGATAAAACATTTGCCAACGAAAAATAAAAGTTGAGA
7730396 TAAGTTATGAGCAA
66 TAAGTTATGAGCAA
* * *
7730410 CAAAGGCAACACAAAAAAAGGTTGGGTTAGATAAAATATTTGCCAACGAAAAATAAAAGTTGTGA
1 CAAAGACAACACAAAAAAAGGTTGGGTTAGATAAAACATTTGCCAACGAAAAATAAAAGTTGAGA
*
7730475 TAGGTTA
66 TAAGTTA
7730482 ATATTTTCCC
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
78 47 0.76
79 15 0.24
ACGTcount: A:0.47, C:0.10, G:0.21, T:0.21
Consensus pattern (79 bp):
CAAAGACAACACAAAAAAAGGTTGGGTTAGATAAAACATTTGCCAACGAAAAATAAAAGTTGAGA
TAAGTTATGAGCAA
Found at i:7730919 original size:140 final size:138
Alignment explanation
Indices: 7730664--7730937 Score: 349
Period size: 140 Copynumber: 2.0 Consensus size: 138
7730654 AACAAAAGTT
* * * * * *
7730664 GGCATAGTGTTAGACAAAACTGACTTTTATTTAAGCGTTGCTTTAGGCATGCATATCCCGACCTT
1 GGCATAGTGTTAGACAAAACTGACTCTTATTTAACCGTTGCCTCAAGCATGCATATCCCAACCTT
* * *
7730729 TATACAAAGAGTTGGCCAAAACATATATCGACAATTCTATCCCAATACTTAGGAAAGT-TTCGGC
66 TACACAAAGAGTTGGCCAAAACATATATCGACAAGTCTATCCCAACACTTA--AAAGTGTT-GGC
7730793 CCAAAAGCGCC
128 CCAAAAGCGCC
*
7730804 GGCATAGTGTTGGACAAAA-TAGACTCTTATTTAACCGTTGCCTCAAGCATGCATATCCCAA-CT
1 GGCATAGTGTTAGACAAAACT-GACTCTTATTTAACCGTTGCCTCAAGCATGCATATCCCAACCT
* * *
7730867 CTTACACAAAGAGTTGGCCAAAGCGTATATCGGCAAGGT-TATCCCAACACTTAAAAGTGTTGGC
65 -TTACACAAAGAGTTGGCCAAAACATATATCGACAA-GTCTATCCCAACACTTAAAAGTGTTGGC
7730931 CCAAAAG
128 CCAAAAG
7730938 TGTTGTCTTA
Statistics
Matches: 117, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
138 15 0.13
139 5 0.04
140 96 0.82
141 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (138 bp):
GGCATAGTGTTAGACAAAACTGACTCTTATTTAACCGTTGCCTCAAGCATGCATATCCCAACCTT
TACACAAAGAGTTGGCCAAAACATATATCGACAAGTCTATCCCAACACTTAAAAGTGTTGGCCCA
AAAGCGCC
Found at i:7733891 original size:78 final size:79
Alignment explanation
Indices: 7733797--7733946 Score: 212
Period size: 78 Copynumber: 1.9 Consensus size: 79
7733787 TGGGTTAGTC
* * * * *
7733797 CAAAGACAACATAAAAAAAGGTTGGGTTAGGTCAAACATTTGCCAATGAAAAA-AAAGGTTGAGA
1 CAAAGACAACACAAAAAAAGGTTGGGTTAGATAAAACATTTGCCAACGAAAAATAAAAGTTGAGA
7733861 TAAGTTATGAGCAA
66 TAAGTTATGAGCAA
* * *
7733875 CAAAGGCAACACAAAAAAAGGTTGGGTTAGATAAAATATTTGCCAACGAAAAATAAAAGTTGTGA
1 CAAAGACAACACAAAAAAAGGTTGGGTTAGATAAAACATTTGCCAACGAAAAATAAAAGTTGAGA
*
7733940 TAGGTTA
66 TAAGTTA
7733947 ATATTTTCCC
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
78 47 0.76
79 15 0.24
ACGTcount: A:0.47, C:0.10, G:0.21, T:0.21
Consensus pattern (79 bp):
CAAAGACAACACAAAAAAAGGTTGGGTTAGATAAAACATTTGCCAACGAAAAATAAAAGTTGAGA
TAAGTTATGAGCAA
Found at i:7734384 original size:140 final size:138
Alignment explanation
Indices: 7734129--7734402 Score: 349
Period size: 140 Copynumber: 2.0 Consensus size: 138
7734119 AACAAAAGTT
* * * * * *
7734129 GGCATAGTGTTAGACAAAACTGACTTTTATTTAAGCGTTGCTTTAGGCATGCATATCCCGACCTT
1 GGCATAGTGTTAGACAAAACTGACTCTTATTTAACCGTTGCCTCAAGCATGCATATCCCAACCTT
* * *
7734194 TATACAAAGAGTTGGCCAAAACATATATCGACAATTCTATCCCAATACTTAGGAAAGT-TTCGGC
66 TACACAAAGAGTTGGCCAAAACATATATCGACAAGTCTATCCCAACACTTA--AAAGTGTT-GGC
7734258 CCAAAAGCGCC
128 CCAAAAGCGCC
*
7734269 GGCATAGTGTTGGACAAAA-TAGACTCTTATTTAACCGTTGCCTCAAGCATGCATATCCCAA-CT
1 GGCATAGTGTTAGACAAAACT-GACTCTTATTTAACCGTTGCCTCAAGCATGCATATCCCAACCT
* * *
7734332 CTTACACAAAGAGTTGGCCAAAGCGTATATCGGCAAGGT-TATCCCAACACTTAAAAGTGTTGGC
65 -TTACACAAAGAGTTGGCCAAAACATATATCGACAA-GTCTATCCCAACACTTAAAAGTGTTGGC
7734396 CCAAAAG
128 CCAAAAG
7734403 TGTTGTCTTA
Statistics
Matches: 117, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
138 15 0.13
139 5 0.04
140 96 0.82
141 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (138 bp):
GGCATAGTGTTAGACAAAACTGACTCTTATTTAACCGTTGCCTCAAGCATGCATATCCCAACCTT
TACACAAAGAGTTGGCCAAAACATATATCGACAAGTCTATCCCAACACTTAAAAGTGTTGGCCCA
AAAGCGCC
Found at i:7735048 original size:3 final size:3
Alignment explanation
Indices: 7735042--7735071 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7735032 TCTTATTATT
7735042 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
7735072 TTTACAGCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:7740396 original size:31 final size:29
Alignment explanation
Indices: 7740327--7740400 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
7740317 ACAAAATAAT
**
7740327 AACATAAGTGACTAAAACGTAACATTTCA
1 AACATAAGTGACTAAAACGTAACATGGCA
*
7740356 AACATAAGTGACTAAAATGTAACATGAGGCA
1 AACATAAGTGACTAAAACGTAACAT--GGCA
*
7740387 AACAAAAGTGACTA
1 AACATAAGTGACTA
7740401 TTTTTGTAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 24 0.62
31 15 0.38
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (29 bp):
AACATAAGTGACTAAAACGTAACATGGCA
Found at i:7754143 original size:24 final size:25
Alignment explanation
Indices: 7754109--7754172 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
7754099 GTTCATATAT
* *
7754109 GCTCATACAAGCTGTA-AACGGGAA
1 GCTCATACAAGCTGAATAACGGAAA
*
7754133 GCTCATGCAAGCTGAATAACGGAAA
1 GCTCATACAAGCTGAATAACGGAAA
*
7754158 GCTCATACGAGCTGA
1 GCTCATACAAGCTGA
7754173 GTATTGAGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 14 0.41
25 20 0.59
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.17
Consensus pattern (25 bp):
GCTCATACAAGCTGAATAACGGAAA
Found at i:7757666 original size:17 final size:17
Alignment explanation
Indices: 7757644--7757704 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 17
7757634 ATTGTTTTTC
7757644 AAAAATATTTTTGAGAT
1 AAAAATATTTTTGAGAT
* *
7757661 AAAAATATTATT-AAAT
1 AAAAATATTTTTGAGAT
* *
7757677 -AAAATACTTTTGGGAT
1 AAAAATATTTTTGAGAT
7757693 AAAAAATATTTT
1 -AAAAATATTTT
7757705 GTAAAAACAC
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
15 9 0.26
16 5 0.15
17 11 0.32
18 9 0.26
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.39
Consensus pattern (17 bp):
AAAAATATTTTTGAGAT
Found at i:7760951 original size:11 final size:11
Alignment explanation
Indices: 7760937--7760977 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
7760927 TGTTTTCTTC
7760937 CTATTTTGCTA
1 CTATTTTGCTA
*
7760948 CTATTTTACTA
1 CTATTTTGCTA
* *
7760959 TTATGTTGCTA
1 CTATTTTGCTA
7760970 CTATTTTG
1 CTATTTTG
7760978 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:7761222 original size:12 final size:12
Alignment explanation
Indices: 7761199--7761232 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7761189 TATATATTTT
*
7761199 AAAATTATATAA
1 AAAATAATATAA
*
7761211 AAACTAATATAA
1 AAAATAATATAA
7761223 AAAATAATAT
1 AAAATAATAT
7761233 GGGCGGGCCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:7770316 original size:25 final size:26
Alignment explanation
Indices: 7770268--7770318 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
7770258 CCCCAGAGAA
7770268 AAAGGTCCCGAGAATGATACTGACAT
1 AAAGGTCCCGAGAATGATACTGACAT
*
7770294 AAAGGTCCCG-GAATGATATTGACAT
1 AAAGGTCCCGAGAATGATACTGACAT
7770319 TTATATGCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.22
Consensus pattern (26 bp):
AAAGGTCCCGAGAATGATACTGACAT
Found at i:7781409 original size:8 final size:8
Alignment explanation
Indices: 7781396--7781424 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
7781386 AATAAATAAA
7781396 AAATTATT
1 AAATTATT
7781404 AAATTATT
1 AAATTATT
7781412 AAA-TATT
1 AAATTATT
7781419 AAATTA
1 AAATTA
7781425 AAATAATATG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (8 bp):
AAATTATT
Found at i:7782051 original size:17 final size:17
Alignment explanation
Indices: 7782026--7782060 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7782016 GTATTTTTAA
*
7782026 TGGATTAACTATGTAAT
1 TGGAATAACTATGTAAT
*
7782043 TGGAATAACTTTGTAAT
1 TGGAATAACTATGTAAT
7782060 T
1 T
7782061 AATAGATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.06, G:0.17, T:0.43
Consensus pattern (17 bp):
TGGAATAACTATGTAAT
Found at i:7782481 original size:12 final size:13
Alignment explanation
Indices: 7782453--7782484 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
7782443 ATTAATTAAT
7782453 TTTAAAATAATCA
1 TTTAAAATAATCA
7782466 TTTAAAATAA-CA
1 TTTAAAATAATCA
7782478 TTTAAAA
1 TTTAAAA
7782485 GTTAGATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (13 bp):
TTTAAAATAATCA
Found at i:7791514 original size:6 final size:6
Alignment explanation
Indices: 7791503--7791578 Score: 65
Period size: 6 Copynumber: 13.5 Consensus size: 6
7791493 AGGCAACCCA
*
7791503 ATTTTT ATTTTT ATTTTT A-TTTT A-TTTT A-GTTT A-TTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
* * *
7791547 ATTTAT -TTTTT CTTATT A-TTTT ATTATTT ATT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATT-TTT ATT
7791579 ATTTTCAGAT
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
5 26 0.44
6 27 0.46
7 6 0.10
ACGTcount: A:0.20, C:0.01, G:0.01, T:0.78
Consensus pattern (6 bp):
ATTTTT
Found at i:7791519 original size:5 final size:5
Alignment explanation
Indices: 7791505--7791571 Score: 62
Period size: 5 Copynumber: 12.4 Consensus size: 5
7791495 GCAACCCAAT
* *
7791505 TTTTA TTTTTA TTTTTA TTTTA TTTTA GTTTA TTTTA TTTTTA TTTATT
1 TTTTA -TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA TTT-TA
*
7791554 TTTTC TTATTA TTTTA TT
1 TTTTA TT-TTA TTTTA TT
7791572 ATTTATTATT
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
5 29 0.55
6 24 0.45
ACGTcount: A:0.18, C:0.01, G:0.01, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:7791525 original size:11 final size:11
Alignment explanation
Indices: 7791505--7791583 Score: 69
Period size: 11 Copynumber: 7.4 Consensus size: 11
7791495 GCAACCCAAT
7791505 TTTTATTTTTA
1 TTTTATTTTTA
7791516 TTTT-TATTTTA
1 TTTTAT-TTTTA
*
7791527 TTTTA-GTTTA
1 TTTTATTTTTA
7791537 TTTTATTTTTA
1 TTTTATTTTTA
7791548 -TTTATTTTT-
1 TTTTATTTTTA
*
7791557 TCTTATTATTT-
1 TTTTATT-TTTA
*
7791568 TATTATTTATTA
1 TTTTATTT-TTA
7791580 TTTT
1 TTTT
7791584 CAGATATTAA
Statistics
Matches: 56, Mismatches: 5, Indels: 13
0.76 0.07 0.18
Matches are distributed among these distances:
10 25 0.45
11 28 0.50
12 3 0.05
ACGTcount: A:0.19, C:0.01, G:0.01, T:0.78
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:7791562 original size:25 final size:25
Alignment explanation
Indices: 7791511--7791584 Score: 80
Period size: 25 Copynumber: 2.9 Consensus size: 25
7791501 CAATTTTTAT
*
7791511 TTTTATTTTTATTTTATTTTAGT-TTA
1 TTTTATTTTTA-TTTATTTT-TTCTTA
7791537 TTTTATTTTTATTTATTTTTTCTTA
1 TTTTATTTTTATTTATTTTTTCTTA
*
7791562 TTATT-TTATTATTTATTATTTTC
1 TT-TTATTTTTATTTATT-TTTTC
7791585 AGATATTAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
24 1 0.02
25 24 0.56
26 18 0.42
ACGTcount: A:0.19, C:0.03, G:0.01, T:0.77
Consensus pattern (25 bp):
TTTTATTTTTATTTATTTTTTCTTA
Found at i:7791579 original size:15 final size:14
Alignment explanation
Indices: 7791505--7791583 Score: 72
Period size: 15 Copynumber: 5.3 Consensus size: 14
7791495 GCAACCCAAT
7791505 TTTTATTTTTATTTTTA
1 TTTTATTTTTA---TTA
7791522 TTTTA-TTTTAGTTTA
1 TTTTATTTTTA--TTA
7791537 TTTTATTTTTATTTA
1 TTTTATTTTTA-TTA
*
7791552 TTTT-TTCTTATTA
1 TTTTATTTTTATTA
7791565 TTTTATTATTTATTA
1 TTTTATT-TTTATTA
7791580 TTTT
1 TTTT
7791584 CAGATATTAA
Statistics
Matches: 56, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
13 7 0.12
14 7 0.12
15 27 0.48
16 10 0.18
17 5 0.09
ACGTcount: A:0.19, C:0.01, G:0.01, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTATTA
Found at i:7792587 original size:96 final size:96
Alignment explanation
Indices: 7792313--7792562 Score: 448
Period size: 96 Copynumber: 2.6 Consensus size: 96
7792303 CTAAGAATGT
* **
7792313 TTGGGTTGAGTAACCGGGGTTAGGTGCCTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCGATAT
1 TTGGGCTGAGTAACCGGGGTGGGGTGCCTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCGATAT
7792378 GTTTTTAGGAAAAATAAAAATTAGGAGTATG
66 GTTTTTAGGAAAAATAAAAATTAGGAGTATG
7792409 TTGGGCTGAGTAACCGGGGTGGGGTGCCTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCGATAT
1 TTGGGCTGAGTAACCGGGGTGGGGTGCCTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCGATAT
7792474 GTTTTTAGGAAAAATAAAAATTAGGAGTATG
66 GTTTTTAGGAAAAATAAAAATTAGGAGTATG
* *
7792505 TTGGGCTGAGTAACCGGGGTGGGGTGCTTGGCTGTCATCTCTCTTCG-TTCAAAAGGTT
1 TTGGGCTGAGTAACCGGGGTGGGGTGCCTGGCTGTCATCTCTCTTCGCATCAAAAGGTT
7792563 AAATATATTC
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
95 10 0.07
96 139 0.93
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.32
Consensus pattern (96 bp):
TTGGGCTGAGTAACCGGGGTGGGGTGCCTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCGATAT
GTTTTTAGGAAAAATAAAAATTAGGAGTATG
Found at i:7793220 original size:15 final size:15
Alignment explanation
Indices: 7793200--7793232 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
7793190 ACTCCATTTT
7793200 ATTTATATTAGGATA
1 ATTTATATTAGGATA
7793215 ATTTATATTAGGATA
1 ATTTATATTAGGATA
7793230 ATT
1 ATT
7793233 ATTAGGATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (15 bp):
ATTTATATTAGGATA
Found at i:7794045 original size:17 final size:18
Alignment explanation
Indices: 7794013--7794046 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7794003 TATTCCTCAT
7794013 TTTAATTTCTGCAATTTA
1 TTTAATTTCTGCAATTTA
7794031 TTTAATTTC-GCAATTT
1 TTTAATTTCTGCAATTT
7794047 CAATTCACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.56
Consensus pattern (18 bp):
TTTAATTTCTGCAATTTA
Found at i:7795493 original size:27 final size:27
Alignment explanation
Indices: 7795454--7795515 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
7795444 GTGTACCTAG
7795454 ACCCCTTAGTTGATAAAATGACTATTAT
1 ACCCC-TAGTTGATAAAATGACTATTAT
* *
7795482 ACCCCTAGTTGATAAAATGATTGTTAT
1 ACCCCTAGTTGATAAAATGACTATTAT
*
7795509 GCCCCTA
1 ACCCCTA
7795516 TGAGATGTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
27 26 0.84
28 5 0.16
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (27 bp):
ACCCCTAGTTGATAAAATGACTATTAT
Found at i:7798108 original size:13 final size:14
Alignment explanation
Indices: 7798092--7798126 Score: 54
Period size: 13 Copynumber: 2.5 Consensus size: 14
7798082 ATAAATAAAT
7798092 AAAAGAAAAA-GAA
1 AAAAGAAAAAGGAA
7798105 AAAAGAAAAAGGAA
1 AAAAGAAAAAGGAA
7798119 ATAAAGAA
1 A-AAAGAA
7798127 GGACGAAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 10 0.50
14 4 0.20
15 6 0.30
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (14 bp):
AAAAGAAAAAGGAA
Found at i:7799042 original size:12 final size:12
Alignment explanation
Indices: 7799025--7799057 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
7799015 TGTGTACCGC
7799025 TACTGTTACTAT
1 TACTGTTACTAT
7799037 TACTGTTACTAT
1 TACTGTTACTAT
7799049 TACTGTTAC
1 TACTGTTAC
7799058 GGTGTATTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.18, G:0.09, T:0.48
Consensus pattern (12 bp):
TACTGTTACTAT
Found at i:7799852 original size:27 final size:27
Alignment explanation
Indices: 7799814--7799868 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
7799804 GGCATTGGCA
*
7799814 CACAGGCGTGTGATCA-GACCGTGTGTC
1 CACAGACGTGTGAT-ATGACCGTGTGTC
7799841 CACAGACGTGTGATATGACCGTGTGTC
1 CACAGACGTGTGATATGACCGTGTGTC
7799868 C
1 C
7799869 CCTGCATCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (27 bp):
CACAGACGTGTGATATGACCGTGTGTC
Found at i:7801147 original size:91 final size:92
Alignment explanation
Indices: 7800963--7801167 Score: 245
Period size: 91 Copynumber: 2.2 Consensus size: 92
7800953 TAGGTATTTA
* * * * *
7800963 AACTTTCACAATGCATGAAAAAGACCCTTAAACTTTTTAAAAAAAAAAACAATTAAGCCTCTGCC
1 AACTTTTAAAATGCATCAAAAAGACCCTCAAACTTTTTAAAAAAAAAAACAATTAAGCCTCTGAC
* *
7801028 TTTTGTTTGCACTCAATTGAGTACTTG
66 TTTTGTTTACACTCAATTAAGTACTTG
* * * **
7801055 AACTTTTAAAATGCATTAAAATGACCCTCAAACTTTTT-CAAAAAAAAGTAATTAAGCCAT-TGA
1 AACTTTTAAAATGCATCAAAAAGACCCTCAAACTTTTTAAAAAAAAAAACAATTAAGCC-TCTGA
* *
7801118 TTTTTTTTTACACTCAATTAAGTACTTG
65 CTTTTGTTTACACTCAATTAAGTACTTG
*
7801146 AA-TTGTAAAATGCATCAAAAAG
1 AACTTTTAAAATGCATCAAAAAG
7801168 GCTCTTTGAC
Statistics
Matches: 96, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
90 17 0.18
91 45 0.47
92 34 0.35
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (92 bp):
AACTTTTAAAATGCATCAAAAAGACCCTCAAACTTTTTAAAAAAAAAAACAATTAAGCCTCTGAC
TTTTGTTTACACTCAATTAAGTACTTG
Found at i:7801284 original size:9 final size:9
Alignment explanation
Indices: 7801272--7801398 Score: 60
Period size: 10 Copynumber: 13.4 Consensus size: 9
7801262 CATGTGGCAA
7801272 AAAAATTAT
1 AAAAATTAT
*
7801281 AAAAA-AAT
1 AAAAATTAT
**
7801289 AAAAACCAAT
1 AAAAA-TTAT
*
7801299 AAAATTTAT
1 AAAAATTAT
*
7801308 AAAAATGATT
1 AAAAATTA-T
*
7801318 AAAATTTAAT
1 AAAAATT-AT
*
7801328 AAAAATAAT
1 AAAAATTAT
*
7801337 -AAAATTGT
1 AAAAATTAT
7801345 AAAAATATAT
1 AAAAAT-TAT
*
7801355 AAAAATATTGT
1 -AAAA-ATTAT
**
7801366 AAATTTTTAT
1 AAA-AATTAT
*
7801376 AAAAATCAT
1 AAAAATTAT
7801385 AATAAATTAT
1 AA-AAATTAT
7801395 AAAA
1 AAAA
7801399 TACATCAAAA
Statistics
Matches: 87, Mismatches: 21, Indels: 20
0.68 0.16 0.16
Matches are distributed among these distances:
8 13 0.15
9 27 0.31
10 38 0.44
11 7 0.08
12 2 0.02
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:7801309 original size:19 final size:19
Alignment explanation
Indices: 7801286--7801342 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
7801276 ATTATAAAAA
7801286 AATAAAAACCAATAAAATTT
1 AATAAAAA-CAATAAAATTT
* *
7801306 -ATAAAAATGATTAAAATTT
1 AATAAAAA-CAATAAAATTT
*
7801325 AATAAAAATAATAAAATT
1 AATAAAAACAATAAAATT
7801343 GTAAAAATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 24 0.77
20 7 0.23
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.30
Consensus pattern (19 bp):
AATAAAAACAATAAAATTT
Found at i:7801329 original size:20 final size:18
Alignment explanation
Indices: 7801296--7801358 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 18
7801286 AATAAAAACC
7801296 AATAAAATTTATAAAAAT
1 AATAAAATTTATAAAAAT
*
7801314 GATTAAAATTTAATAAAAAT
1 -AATAAAATTT-ATAAAAAT
*
7801334 AATAAAA-TTGTAAAAAT
1 AATAAAATTTATAAAAAT
7801351 ATATAAAA
1 A-ATAAAA
7801359 ATATTGTAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
17 8 0.21
18 8 0.21
19 15 0.38
20 8 0.21
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (18 bp):
AATAAAATTTATAAAAAT
Found at i:7801390 original size:22 final size:21
Alignment explanation
Indices: 7801352--7801392 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7801342 TGTAAAAATA
**
7801352 TATAAAAATATTGTAAATTTT
1 TATAAAAATATAATAAATTTT
7801373 TATAAAAATCATAATAAATT
1 TATAAAAAT-ATAATAAATT
7801393 ATAAAATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (21 bp):
TATAAAAATATAATAAATTTT
Found at i:7801686 original size:38 final size:38
Alignment explanation
Indices: 7801603--7801686 Score: 102
Period size: 39 Copynumber: 2.2 Consensus size: 38
7801593 ATTTTTTACG
7801603 AATTTTATATTTTTTATAATTTTCTTATGACTTTATAA
1 AATTTTATATTTTTTATAATTTTCTTATGACTTTATAA
* *
7801641 AAATTTATAATTTTTTAT-ATATTTCTATAT-ATTTTAT-A
1 AATTTTAT-ATTTTTTATAAT-TTTCT-TATGACTTTATAA
7801679 AATTTTAT
1 AATTTTAT
7801687 TTTACCATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
38 17 0.43
39 20 0.50
40 3 0.08
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.61
Consensus pattern (38 bp):
AATTTTATATTTTTTATAATTTTCTTATGACTTTATAA
Found at i:7804051 original size:22 final size:21
Alignment explanation
Indices: 7804007--7804051 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
7803997 TTTTAATAAA
*
7804007 ATATCCATCAATTTCGTTAAT
1 ATATCCATCAATTTCCTTAAT
7804028 ATATCCAT-ATATTGTCCTTAAT
1 ATATCCATCA-ATT-TCCTTAAT
7804050 AT
1 AT
7804052 TTTTTACATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 1 0.05
21 11 0.52
22 9 0.43
ACGTcount: A:0.33, C:0.18, G:0.04, T:0.44
Consensus pattern (21 bp):
ATATCCATCAATTTCCTTAAT
Found at i:7804133 original size:35 final size:36
Alignment explanation
Indices: 7804082--7804164 Score: 105
Period size: 35 Copynumber: 2.3 Consensus size: 36
7804072 TGAAAGAAAA
* *
7804082 TCGGAGGGATTAGCTCTTACGAGCAT-TAGTGTGTT
1 TCGGATGGATTGGCTCTTACGAGCATCTAGTGTGTT
* *
7804117 TCGGATGGATTGGCTCTTATGAGCATCTGGTGTGTT
1 TCGGATGGATTGGCTCTTACGAGCATCTAGTGTGTT
* *
7804153 TTGGTTGGATTG
1 TCGGATGGATTG
7804165 TCGATGTACT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
35 23 0.56
36 18 0.44
ACGTcount: A:0.16, C:0.12, G:0.34, T:0.39
Consensus pattern (36 bp):
TCGGATGGATTGGCTCTTACGAGCATCTAGTGTGTT
Found at i:7806106 original size:14 final size:14
Alignment explanation
Indices: 7806087--7806115 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7806077 ACTATGAGAT
7806087 AAAATAGGATCATA
1 AAAATAGGATCATA
7806101 AAAATAGGATCATA
1 AAAATAGGATCATA
7806115 A
1 A
7806116 TGGGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.07, G:0.14, T:0.21
Consensus pattern (14 bp):
AAAATAGGATCATA
Found at i:7808375 original size:30 final size:30
Alignment explanation
Indices: 7808302--7808363 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
7808292 CCAGAAAAAC
7808302 AAATGTGATTAATTTGAGTAATTATTTTAT
1 AAATGTGATTAATTTGAGTAATTATTTTAT
7808332 AAATGTGATTAATTTGAGTAATTATTTTAT
1 AAATGTGATTAATTTGAGTAATTATTTTAT
7808362 AA
1 AA
7808364 CTTTCTATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (30 bp):
AAATGTGATTAATTTGAGTAATTATTTTAT
Found at i:7808439 original size:35 final size:35
Alignment explanation
Indices: 7808393--7808461 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
7808383 AAAAAAGAAG
* *
7808393 TTTAAACATAATTGGAAAGCTATTGATATAATTTT
1 TTTAAACATAATTGGAAAGCTACTGACATAATTTT
7808428 TTTAAACATAATTGGAAAGCTACTGACATAATTT
1 TTTAAACATAATTGGAAAGCTACTGACATAATTT
7808462 ATCCTCTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.39
Consensus pattern (35 bp):
TTTAAACATAATTGGAAAGCTACTGACATAATTTT
Found at i:7809071 original size:29 final size:29
Alignment explanation
Indices: 7809003--7809072 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
7808993 TTACAATTTA
* *
7809003 AACTTATTTGATTCTTTTAATAATATAAG
1 AACTAATTTGATTCTTTTAATAATAGAAG
* * * *
7809032 GATTAAATTGATT-TATTTAATAATAGATG
1 AACTAATTTGATTCT-TTTAATAATAGAAG
7809061 AACTAATTTGAT
1 AACTAATTTGAT
7809073 CTAATCCCTA
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
28 1 0.03
29 30 0.97
ACGTcount: A:0.40, C:0.04, G:0.10, T:0.46
Consensus pattern (29 bp):
AACTAATTTGATTCTTTTAATAATAGAAG
Found at i:7814062 original size:33 final size:33
Alignment explanation
Indices: 7813995--7814063 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
7813985 GAAACACCAT
*
7813995 CACCACCCACAAATACTGAACCACATATTGAAC
1 CACCACCCACAAATACTGAACCACATATTAAAC
*
7814028 CACCACCCATAAATACTGAACCACATGA-TAAAC
1 CACCACCCACAAATACTGAACCACAT-ATTAAAC
7814061 CAC
1 CAC
7814064 ATATTGAACC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.43, C:0.36, G:0.06, T:0.14
Consensus pattern (33 bp):
CACCACCCACAAATACTGAACCACATATTAAAC
Found at i:7823099 original size:24 final size:24
Alignment explanation
Indices: 7823051--7823099 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7823041 AATATATATT
* **
7823051 CAATGATCAAATTTTGTTTGTATA
1 CAATGATCAAATTTTGATTCAATA
*
7823075 CAATGATCAAGTTTTGATTCAATA
1 CAATGATCAAATTTTGATTCAATA
7823099 C
1 C
7823100 GGTATTCTCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (24 bp):
CAATGATCAAATTTTGATTCAATA
Found at i:7825168 original size:7 final size:7
Alignment explanation
Indices: 7825158--7825182 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7825148 TAAAAAGGAA
7825158 AAAAAAT
1 AAAAAAT
7825165 AAAAAAT
1 AAAAAAT
7825172 AAAAAAT
1 AAAAAAT
7825179 AAAA
1 AAAA
7825183 CGAAAAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:7832670 original size:40 final size:40
Alignment explanation
Indices: 7832615--7832762 Score: 287
Period size: 40 Copynumber: 3.7 Consensus size: 40
7832605 GAGCATTGGA
7832615 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
7832655 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
7832695 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
7832735 ATATATCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
7832763 ATGTGTTTGC
Statistics
Matches: 107, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 107 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:7838740 original size:26 final size:26
Alignment explanation
Indices: 7838703--7838786 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
7838693 TGATACAAAT
* * *
7838703 TGATAATAGGTTAGGCAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7838729 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7838755 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7838781 TGATAA
1 TGATAA
7838787 GAATTTCATG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:7840818 original size:137 final size:137
Alignment explanation
Indices: 7840572--7840858 Score: 547
Period size: 137 Copynumber: 2.1 Consensus size: 137
7840562 GAGTAGTCTC
7840572 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
7840637 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGCCCCAGTACC
7840702 ACTGTTA
131 ACTGTTA
7840709 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
7840774 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGCCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGCCCCAGTACC
7840839 ACTGTTA
131 ACTGTTA
**
7840846 CCTGAATGGGCTT
1 CCCAAATGGGCTT
7840859 AGGCCCAATA
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 147 1.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGCCCCAGTACC
ACTGTTA
Found at i:7842044 original size:20 final size:20
Alignment explanation
Indices: 7842001--7842046 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
7841991 ACTGTTTTGT
7842001 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
7842021 -ATGGGCTCAACTGTGTT-AA
1 TATGGGC-CAACTGTATTGAA
7842040 TATGGGC
1 TATGGGC
7842047 AAAGCCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:7842187 original size:27 final size:28
Alignment explanation
Indices: 7842075--7842180 Score: 81
Period size: 28 Copynumber: 3.7 Consensus size: 28
7842065 ACTTGTAATA
* * *
7842075 GGGCTACGGCCCAGATTGACACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
* * *
7842103 GGGCT-AGGCCCAGTATACTCTGATACTGAAAG
1 GGGCTAAGGCCCAG---A-T-TAATACTGATAT
* *
7842135 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
7842163 GGGCTAAGGCCCA-ATTAA
1 GGGCTAAGGCCCAGATTAA
7842181 CTCTGATTTC
Statistics
Matches: 62, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
27 12 0.19
28 25 0.40
29 1 0.02
30 2 0.03
31 1 0.02
32 14 0.23
33 7 0.11
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATACTGATAT
Found at i:7846478 original size:23 final size:22
Alignment explanation
Indices: 7846452--7846495 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
7846442 GTGATGAGGT
7846452 TATCTT-ATAAATATGTATGAATC
1 TATCTTGA-AAATATGT-TGAATC
7846475 TATCTTGAAAATATGTTGAAT
1 TATCTTGAAAATATGTTGAAT
7846496 TGGATTGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.25
23 14 0.70
24 1 0.05
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.43
Consensus pattern (22 bp):
TATCTTGAAAATATGTTGAATC
Found at i:7847880 original size:39 final size:39
Alignment explanation
Indices: 7847837--7847914 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
7847827 ACATTTTCAG
*
7847837 ATAATTCGTGTAAATTACAATTCATTAATTGAGATTTAT
1 ATAATTCGTGTAAATTACAATTCATTAACTGAGATTTAT
7847876 ATAATTCGTGTAAATTACAATTCATTAACTGAGATTTAT
1 ATAATTCGTGTAAATTACAATTCATTAACTGAGATTTAT
7847915 TCATAACGTC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.42
Consensus pattern (39 bp):
ATAATTCGTGTAAATTACAATTCATTAACTGAGATTTAT
Found at i:7848673 original size:6 final size:6
Alignment explanation
Indices: 7848662--7848688 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
7848652 TTGCAAGCAT
7848662 CATTTA CATTTA CATTTA CATTTA CAT
1 CATTTA CATTTA CATTTA CATTTA CAT
7848689 GCCAATATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.48
Consensus pattern (6 bp):
CATTTA
Found at i:7850159 original size:16 final size:17
Alignment explanation
Indices: 7850128--7850160 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7850118 TTCATAAGTA
7850128 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
7850145 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
7850161 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:7850552 original size:46 final size:46
Alignment explanation
Indices: 7850446--7850805 Score: 456
Period size: 46 Copynumber: 7.8 Consensus size: 46
7850436 TTTGACATGA
* * * * *
7850446 TGCCATAGTGTCTTTCAACTATGGTCTTATTTATCTT--TGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCAT-TTCATGTCACGT
* *
7850491 TGCCATGGTACCTTTCAACCATGGTCTTATTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGTCACGT
*
7850537 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
* ** * *
7850583 TGCCATGGTGTCTTTCAACCATGGTCTTATTCATTTCCCGTTATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
*
7850629 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
** * *
7850675 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
* ** * *
7850721 TGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
**
7850767 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
7850806 ATCAAAGAGC
Statistics
Matches: 285, Mismatches: 27, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
45 34 0.12
46 251 0.88
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
Found at i:7854258 original size:15 final size:16
Alignment explanation
Indices: 7854226--7854263 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
7854216 ATTTTTTTTC
7854226 TTATCATTTAATTAAA
1 TTATCATTTAATTAAA
7854242 TTATCATTTAA-TAAA
1 TTATCATTTAATTAAA
*
7854257 TTTTCAT
1 TTATCAT
7854264 CTTTCCAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (16 bp):
TTATCATTTAATTAAA
Found at i:7858703 original size:21 final size:21
Alignment explanation
Indices: 7858677--7858717 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7858667 TGGGTGGATA
*
7858677 AGCTCTTAAGAGCTTCTGTTC
1 AGCTCTCAAGAGCTTCTGTTC
* *
7858698 AGCTCTCACGAGCTTTTGTT
1 AGCTCTCAAGAGCTTCTGTT
7858718 GGCGTGTTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.24, G:0.20, T:0.39
Consensus pattern (21 bp):
AGCTCTCAAGAGCTTCTGTTC
Found at i:7863998 original size:15 final size:15
Alignment explanation
Indices: 7863978--7864085 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
7863968 TTTATGGAAA
7863978 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
7863993 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
7864007 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
7864023 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
7864037 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
7864053 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
7864067 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
7864083 ATC
1 ATC
7864086 GAGATATTGG
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 13 0.19
15 43 0.62
16 13 0.19
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:7864007 original size:30 final size:30
Alignment explanation
Indices: 7863971--7864085 Score: 203
Period size: 30 Copynumber: 3.8 Consensus size: 30
7863961 ATCCATATTT
*
7863971 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
7864001 ATGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
7864031 TTGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
7864061 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
7864086 GAGATATTGG
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 83 1.00
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.25
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:7868687 original size:15 final size:15
Alignment explanation
Indices: 7868667--7868774 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
7868657 TTTATGGAAA
7868667 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
7868682 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
7868696 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
7868712 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
7868726 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
7868742 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
7868756 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
7868772 ATC
1 ATC
7868775 GAGATATTGG
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 13 0.19
15 43 0.62
16 13 0.19
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:7868696 original size:30 final size:30
Alignment explanation
Indices: 7868660--7868774 Score: 203
Period size: 30 Copynumber: 3.8 Consensus size: 30
7868650 ATCCATATTT
*
7868660 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
7868690 ATGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
7868720 TTGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
7868750 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
7868775 GAGATATTGG
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 83 1.00
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.25
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:7872794 original size:2 final size:2
Alignment explanation
Indices: 7872787--7872819 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
7872777 CAATAATTAA
*
7872787 AT AT AT AT AT CT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7872820 AAATTTTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7880937 original size:15 final size:17
Alignment explanation
Indices: 7880912--7880944 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
7880902 CTTGACTTGT
7880912 TTTTAATTTTATA-ATA
1 TTTTAATTTTATATATA
7880928 TTTT-ATTTTATATATA
1 TTTTAATTTTATATATA
7880944 T
1 T
7880945 ATATTTTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTAATTTTATATATA
Found at i:7881066 original size:16 final size:15
Alignment explanation
Indices: 7881047--7881086 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
7881037 AAAATTCAAT
7881047 AAATAAAAAATATATA
1 AAATAAAAAATAT-TA
*
7881063 AAATATTAAAATATTA
1 AAATA-AAAAATATTA
7881079 AAATAAAA
1 AAATAAAA
7881087 TAAAAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 2 0.10
16 12 0.57
17 7 0.33
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AAATAAAAAATATTA
Found at i:7881074 original size:8 final size:8
Alignment explanation
Indices: 7881053--7881083 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
7881043 CAATAAATAA
7881053 AAAATATAT
1 AAAATAT-T
7881062 AAAATATT
1 AAAATATT
7881070 AAAATATT
1 AAAATATT
7881078 AAAATA
1 AAAATA
7881084 AAATAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 15 0.68
9 7 0.32
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (8 bp):
AAAATATT
Found at i:7881105 original size:13 final size:15
Alignment explanation
Indices: 7881087--7881126 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 15
7881077 TAAAATAAAA
7881087 TAAAAATAAT-TT-T
1 TAAAAATAATATTAT
*
7881100 TTAAAA-AATATTAT
1 TAAAAATAATATTAT
7881114 TAAAAATAATATT
1 TAAAAATAATATT
7881127 GATGGACATA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 3 0.14
13 7 0.32
14 6 0.27
15 6 0.27
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TAAAAATAATATTAT
Found at i:7881860 original size:21 final size:20
Alignment explanation
Indices: 7881834--7881881 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
7881824 TACTTCTTTA
7881834 ATAATTTTTATA-AATAATTTT
1 ATAATTTTT-TAGAAT-ATTTT
7881855 ATAATTTTTTAGAATATTTT
1 ATAATTTTTTAGAATATTTT
7881875 A-AATTTT
1 ATAATTTT
7881882 AAAAAATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.23
20 8 0.31
21 12 0.46
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (20 bp):
ATAATTTTTTAGAATATTTT
Found at i:7883225 original size:25 final size:25
Alignment explanation
Indices: 7883197--7883245 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
7883187 AAACCATTGA
7883197 TAAAACAATAAAAAATTA-ATTTAAT
1 TAAAA-AATAAAAAATTATATTTAAT
* *
7883222 TAAAAGATAAAATATTATATTTAA
1 TAAAAAATAAAAAATTATATTTAA
7883246 AATTGGACGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (25 bp):
TAAAAAATAAAAAATTATATTTAAT
Found at i:7896553 original size:19 final size:17
Alignment explanation
Indices: 7896529--7896645 Score: 59
Period size: 16 Copynumber: 6.9 Consensus size: 17
7896519 TAATATTAGA
7896529 AAAATATATATAATAGTGT
1 AAAATATATATAATA-T-T
7896548 AAAATATAACTAATAATATT
1 AAAATAT-A-T-ATAATATT
*
7896568 AAAATATATACAATGA-T
1 AAAATATATATAAT-ATT
* * *
7896585 AATATATATAAAAGA-T
1 AAAATATATATAATATT
* *
7896601 -ATATGTATAT-ATAATT
1 AAAATATATATAAT-ATT
*
7896617 -ATATA-ATATAATATT
1 AAAATATATATAATATT
7896632 AAAATATA-ATAATA
1 AAAATATATATAATA
7896646 CGATATAAAA
Statistics
Matches: 80, Mismatches: 9, Indels: 21
0.73 0.08 0.19
Matches are distributed among these distances:
14 1 0.01
15 16 0.20
16 19 0.24
17 17 0.21
18 2 0.03
19 8 0.10
20 9 0.11
21 2 0.03
22 6 0.08
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (17 bp):
AAAATATATATAATATT
Found at i:7896581 original size:64 final size:64
Alignment explanation
Indices: 7896508--7896639 Score: 164
Period size: 64 Copynumber: 2.1 Consensus size: 64
7896498 TAAACGACAG
*
7896508 TATATACAAT-ATAATAT-TAGAAAA-ATATATATAATAGTGTAA-AATATAACTAATAATATTA
1 TATATACAATGATAATATATAGAAAAGATATATAT-ATA-TATAATAATATAA-T-ATAATATTA
7896569 AAA
62 AAA
* * *
7896572 TATATACAATGATAATATATATAAAAGATATATGTATATATAATTATATAATATAATATTAAAA
1 TATATACAATGATAATATATAGAAAAGATATATATATATATAATAATATAATATAATATTAAAA
7896636 TATA
1 TATA
7896640 ATAATACGAT
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
64 26 0.43
65 12 0.20
66 15 0.25
67 7 0.12
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (64 bp):
TATATACAATGATAATATATAGAAAAGATATATATATATATAATAATATAATATAATATTAAAA
Found at i:7896858 original size:3 final size:3
Alignment explanation
Indices: 7896843--7896881 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
7896833 AAGCATAAAC
* *
7896843 TAA TAA AAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7896882 CATTGGAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:7897039 original size:6 final size:6
Alignment explanation
Indices: 7896997--7897030 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
7896987 ATAAAAATAT
*
7896997 ATACTA ATACATA ATAGTA ATACTA ATACTA ATA
1 ATACTA ATAC-TA ATACTA ATACTA ATACTA ATA
7897031 ATACTAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.53, C:0.12, G:0.03, T:0.32
Consensus pattern (6 bp):
ATACTA
Found at i:7897529 original size:11 final size:12
Alignment explanation
Indices: 7897513--7897547 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
7897503 AAGAAAAAAA
7897513 AAGAGAG-AGGG
1 AAGAGAGAAGGG
7897524 AAGAGAGAAGGG
1 AAGAGAGAAGGG
7897536 -AGAGAGAAGGG
1 AAGAGAGAAGGG
7897547 A
1 A
7897548 GGGGGGAAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 18 0.82
12 4 0.18
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (12 bp):
AAGAGAGAAGGG
Found at i:7898744 original size:88 final size:90
Alignment explanation
Indices: 7898632--7899144 Score: 517
Period size: 88 Copynumber: 5.8 Consensus size: 90
7898622 CAAATACAGG
* * * *
7898632 GACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGC-ATCGTCG
1 GACAAGATCTGCTATCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTGCTATCTTCG
*
7898696 ATCCACTTC-CTATCAATATAGGAA
66 ATCCACTTCACTACCAATATAGGAA
* * * * * * * *
7898720 GATAGGACCTGCTATCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTTTCTGCG
1 GACAAGATCTGCTATCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTGCTATCTTCG
* * * *
7898784 ATCTACTTCGCCACCAATATGGGAA
66 ATCCACTTCACTACCAATATAGGAA
* * * * *
7898809 GACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGCTACCTTCG
1 GACAAGATCTGCTATCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTGCTATCTTCG
* * * *
7898872 ATCTACTTCAC-GCCAATACATGAA
66 ATCCACTTCACTACCAATATAGGAA
* * * *
7898896 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCG
1 GACAAGATCTGCTATCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTGCTATCTTCG
7898960 ATCCACTTC-CTACCAATATAGGAA
66 ATCCACTTCACTACCAATATAGGAA
* * * * * * * *
7898984 GATAGGATCTGCTACCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTTTCTGCG
1 GACAAGATCTGCTATCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTGCTATCTTCG
* * * *
7899048 ATCTACTTCGCCACCAATATGGGAA
66 ATCCACTTCACTACCAATATAGGAA
* * * * *
7899073 GACAAGATCTGC-ATCTTCGATCTATTTC-CTACCAATATAGGAAGATAGGATCAGCTATCTTCG
1 GACAAGATCTGCTATCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTGCTATCTTCG
*
7899136 ATCTACTTC
66 ATCCACTTC
7899145 TTGCCCCGGG
Statistics
Matches: 342, Mismatches: 74, Indels: 18
0.79 0.17 0.04
Matches are distributed among these distances:
87 65 0.19
88 210 0.61
89 67 0.20
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (90 bp):
GACAAGATCTGCTATCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTGCTATCTTCG
ATCCACTTCACTACCAATATAGGAA
Found at i:7898820 original size:132 final size:132
Alignment explanation
Indices: 7898632--7899144 Score: 927
Period size: 132 Copynumber: 3.9 Consensus size: 132
7898622 CAAATACAGG
* * * *
7898632 GACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCGTCGA
1 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
* * *
7898697 TCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATG
66 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
7898762 AA
131 AA
7898764 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
1 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
7898829 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
66 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
7898894 AA
131 AA
7898896 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
1 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
7898961 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
66 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
7899026 AA
131 AA
7899028 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
1 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
* * * *
7899093 TCTATTTCCTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTC
66 TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTC
7899145 TTGCCCCGGG
Statistics
Matches: 370, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 370 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (132 bp):
GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGA
TCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATG
AA
Found at i:7899279 original size:46 final size:45
Alignment explanation
Indices: 7899228--7899555 Score: 151
Period size: 46 Copynumber: 7.3 Consensus size: 45
7899218 ACCTGCTTTG
*
7899228 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGTAAGATCTGC-ATCTTCAATCTATTCCA
* * * * ** * *
7899274 CTGCCAAATACAGGGAGATAGAGTTAT-CGGCTTCAATGTACTCCA
1 CTGCCAAATACAGGAAGGTA-AGATCTGCATCTTCAATCTATTCCA
*** * * ** * *
7899319 CTG--TGGT-CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTT-CG
1 CTGCCAAATACAGGAAGGTAAGATCTG-CATCTTCAATCT-ATTCCA
*
7899362 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGTAAGATCTGC-ATCTTCAATCTATTCCA
* * * *
7899408 CTGCCAAATACAGGGAA-ATAGAGTTATCGGC-T-TT-AATGTACTCCA
1 CTGCCAAATACA-GGAAGGTA-AG--ATCTGCATCTTCAATCTATTCCA
*** * * ** * *
7899453 CTG--TGGT-CAGGGAGGTAAAATCTGTCATCTTTGATCTGCTT-CG
1 CTGCCAAATACAGGAAGGTAAGATCTG-CATCTTCAATCT-ATTCCA
**
7899496 CTGCCAAATACAGGAAGGCCAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGTAAGATCTGC-ATCTTCAATCTATTCCA
7899542 CTGCCAAATACAGG
1 CTGCCAAATACAGG
7899556 GAGATAGAAT
Statistics
Matches: 196, Mismatches: 62, Indels: 48
0.64 0.20 0.16
Matches are distributed among these distances:
39 4 0.02
40 1 0.01
41 8 0.04
42 15 0.08
43 20 0.10
44 2 0.01
45 36 0.18
46 94 0.48
47 11 0.06
49 5 0.03
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (45 bp):
CTGCCAAATACAGGAAGGTAAGATCTGCATCTTCAATCTATTCCA
Found at i:7899358 original size:134 final size:134
Alignment explanation
Indices: 7899152--7899760 Score: 966
Period size: 134 Copynumber: 4.5 Consensus size: 134
7899142 TTCTTGCCCC
** * * * ** * * *
7899152 GGGAGATAGAACTATCAGTTTCAATGTACTCCACTATAATCAGGGAGGTAAAATCCGCCGTCTTC
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
* * *
7899217 AACCTGCTTTGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
66 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
7899282 TACA
131 TACA
7899286 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
7899351 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
66 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
7899416 TACA
131 TACA
* * *
7899420 GGGAAATAGAGTTATCGGCTTTAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGTCATCTTT
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
*
7899485 GATCTGCTTCGCTGCCAAATACAGGAAGGCCAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
66 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
7899550 TACA
131 TACA
* *
7899554 GGGAGATAGAATTATCGGCTTCAGTGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATC-TT
* *
7899619 TGATCTGCTTCGCTGTCAAATACAAGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
65 TGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
*
7899684 ATACT
130 ATACA
* * *
7899689 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAATTCTGCCATCT
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGT--CAGGGAGGTAAAATCTGCCATCT
7899754 TTGATCT
64 TTGATCT
7899761 TCAATCTATT
Statistics
Matches: 441, Mismatches: 31, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
134 308 0.70
135 105 0.24
136 8 0.02
137 20 0.05
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (134 bp):
GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
TACA
Found at i:7899713 original size:45 final size:45
Alignment explanation
Indices: 7899662--7899821 Score: 110
Period size: 45 Copynumber: 3.4 Consensus size: 45
7899652 GATCTGCAAT
*
7899662 CTTCAATCTATTCCACTGCCAAATACTGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACTGGGAGATAGAGTTATCGG
* * * * * * *
7899707 CTTCAATGTACTCCACTG--TAGTCACAT-GGAGGTAAATTCTGCCATCTTTGAT
1 CTTCAATCTACTCCACTGCCAAAT-AC-TGGGAGATAGAGT-T---ATC---G-G
* *
7899759 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACTGGGAGATAGAGTTATCGG
*
7899804 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
7899822 TAGTCAGGGA
Statistics
Matches: 83, Mismatches: 19, Indels: 26
0.65 0.15 0.20
Matches are distributed among these distances:
43 2 0.02
44 10 0.12
45 34 0.41
46 1 0.01
48 3 0.04
49 3 0.04
51 1 0.01
52 17 0.20
53 10 0.12
54 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (45 bp):
CTTCAATCTACTCCACTGCCAAATACTGGGAGATAGAGTTATCGG
Found at i:7899883 original size:95 final size:95
Alignment explanation
Indices: 7899660--7900234 Score: 1008
Period size: 95 Copynumber: 6.0 Consensus size: 95
7899650 AAGATCTGCA
* *
7899660 ATCTTCAATCTATTCCACTGCCAAATACTGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
7899725 TAGTCACATGGAGGTAAATTCTGCCATCTTTG
66 TAGT--CAGGGAGGTAAAATCTGCCATCTTTG
*
7899757 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
7899822 TAGTCAGGGAGGTAAAATCTGCCATATTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
*
7899852 ATCTTCAATCTATTCCACTGCCAGATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
7899917 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
*
7899947 ATCTTCAATCTATTCCACTGCC-AATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCCCTG
1 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
7900011 TAGTCAGGGAGGTAAAATCTGCCATCTTCG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
* *
7900041 ATCTTCAATCTATTCCACTGCCAGATGCAGGGAGATAGAGTTATCGACTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
7900106 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
7900136 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
7900201 TGGTCAGGGAGGTAAAATCTGCCATCTTCG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
7900231 ATCT
1 ATCT
7900235 GCTTCGCTGC
Statistics
Matches: 459, Mismatches: 18, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
94 91 0.20
95 300 0.65
97 68 0.15
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTTG
Found at i:7900046 original size:189 final size:190
Alignment explanation
Indices: 7899660--7900234 Score: 1026
Period size: 189 Copynumber: 3.0 Consensus size: 190
7899650 AAGATCTGCA
* * *
7899660 ATCTTCAATCTATTCCACTGCCAAATACTGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAGATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* * *
7899725 TAGTCACATGGAGGTAAATTCTGCCATCTTTGATCTTCAATCTATTCCACTGCCAAATACAGGGA
66 TAGT--CAGGGAGGTAAAATCTGCCATCTTTGATCTTCAATCTATTCCACTGCCAAATGCAGGGA
* *
7899790 GATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATATTTG
129 GATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCG
7899852 ATCTTCAATCTATTCCACTGCCAGATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAGATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
7899917 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTTCAATCTATTCCACTGCC-AATGCAGGGAGA
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTTCAATCTATTCCACTGCCAAATGCAGGGAGA
*
7899981 TAGAGTTATCGGCTTCAATGTACTCCCCTGTAGTCAGGGAGGTAAAATCTGCCATCTTCG
131 TAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCG
*
7900041 ATCTTCAATCTATTCCACTGCCAGATGCAGGGAGATAGAGTTATCGACTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAGATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
7900106 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTTCAATCTATTCCACTGCCAAATGCAGGGAGA
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTTCAATCTATTCCACTGCCAAATGCAGGGAGA
*
7900171 TAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTCG
131 TAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCG
7900231 ATCT
1 ATCT
7900235 GCTTCGCTGC
Statistics
Matches: 370, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
189 184 0.50
190 120 0.32
192 66 0.18
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (190 bp):
ATCTTCAATCTATTCCACTGCCAGATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTTCAATCTATTCCACTGCCAAATGCAGGGAGA
TAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCG
Found at i:7900060 original size:284 final size:286
Alignment explanation
Indices: 7899660--7900234 Score: 1010
Period size: 284 Copynumber: 2.0 Consensus size: 286
7899650 AAGATCTGCA
*
7899660 ATCTTCAATCTATTCCACTGCCAAATACTGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* * *
7899725 TAGTCACATGGAGGTAAATTCTGCCATCTTTGATCTTCAATCTATTCCACTGCCAAATACAGGGA
66 TAGT-ACAGGGAGGTAAAATCTGCCATCTTCGATCTTCAATCTATTCCACTGCCAAATACAGGGA
*
7899790 GATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATATTTGATC
130 GATAGAGTTATCGACTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATATTTGATC
*
7899855 TTCAATCTATTCCACTGCCAGATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAG
195 TTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAG
*
7899920 TCAGGGAGGTAAAATCTGCCATCTTTG
260 TCAGGGAGGTAAAATCTGCCATCTTCG
* *
7899947 ATCTTCAATCTATTCCACTGCC-AATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCCCTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
7900011 TAGT-CAGGGAGGTAAAATCTGCCATCTTCGATCTTCAATCTATTCCACTGCCAGATGCAGGGAG
66 TAGTACAGGGAGGTAAAATCTGCCATCTTCGATCTTCAATCTATTCCACTGCCAAATACAGGGAG
*
7900075 ATAGAGTTATCGACTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCT
131 ATAGAGTTATCGACTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATATTTGATCT
*
7900140 TCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGT
196 TCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGT
7900205 CAGGGAGGTAAAATCTGCCATCTTCG
261 CAGGGAGGTAAAATCTGCCATCTTCG
7900231 ATCT
1 ATCT
7900235 GCTTCGCTGC
Statistics
Matches: 275, Mismatches: 13, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
284 210 0.76
286 43 0.16
287 22 0.08
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (286 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTACAGGGAGGTAAAATCTGCCATCTTCGATCTTCAATCTATTCCACTGCCAAATACAGGGAG
ATAGAGTTATCGACTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATATTTGATCT
TCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGT
CAGGGAGGTAAAATCTGCCATCTTCG
Found at i:7900289 original size:134 final size:134
Alignment explanation
Indices: 7900136--7900411 Score: 491
Period size: 134 Copynumber: 2.1 Consensus size: 134
7900126 GCCATCTTTG
*
7900136 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
7900201 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGTAAGATC
66 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
7900266 TGCA-
131 TG-AT
7900270 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
7900335 TTGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
66 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
7900400 TGAT
131 TGAT
7900404 ATCTTCAA
1 ATCTTCAA
7900412 CCAGCTCTGC
Statistics
Matches: 136, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
133 1 0.01
134 135 0.99
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (134 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
TGAT
Found at i:7900291 original size:46 final size:46
Alignment explanation
Indices: 7900205--7900300 Score: 122
Period size: 46 Copynumber: 2.1 Consensus size: 46
7900195 CCACTGTGGT
* * * * *
7900205 CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATA
1 CAGGAAGGTAAAATCTGCAATCTTCAATCTGATTCACTGCCAAATA
*
7900251 CAGGAAGGTAAGATCTGCAATCTTCAATCT-ATTCCACTGCCAAATA
1 CAGGAAGGTAAAATCTGCAATCTTCAATCTGATT-CACTGCCAAATA
7900297 CAGG
1 CAGG
7900301 GAGATAGAGT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
45 2 0.05
46 41 0.95
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (46 bp):
CAGGAAGGTAAAATCTGCAATCTTCAATCTGATTCACTGCCAAATA
Found at i:7900511 original size:86 final size:86
Alignment explanation
Indices: 7900358--7900708 Score: 531
Period size: 86 Copynumber: 4.1 Consensus size: 86
7900348 AAAATCTGCC
* * * * *
7900358 ATCTTTGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATCTGATATCTTCAACCAGCTCTGCT
1 ATCTTCGATCTGCTTCGCTGTC-AATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACT
7900423 ACAAACGAGAGAGGCAAGGTTT
65 ACAAACGAGAGAGGCAAGGTTT
* * * *
7900445 ATCTTCGATCTGCTTCGCTGTCAGTGTAGGAAGGCAAGATCTGCTATCTTCAACCAACTCTACTA
1 ATCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTA
*
7900510 CAAACGAGAGTGGCAAGGTTT
66 CAAACGAGAGAGGCAAGGTTT
* *
7900531 GTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTA
1 ATCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTA
*
7900596 CAAACGAGAGTGGCAAGGTTT
66 CAAACGAGAGAGGCAAGGTTT
* * *
7900617 GTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATAACTTCAACCAGCTCTGCTA
1 ATCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTA
* *
7900682 CGACCGAGAGAGGCAAGGTTT
66 CAAACGAGAGAGGCAAGGTTT
7900703 ATCTTC
1 ATCTTC
7900709 AATTTTACTG
Statistics
Matches: 243, Mismatches: 21, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
86 223 0.92
87 20 0.08
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (86 bp):
ATCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTA
CAAACGAGAGAGGCAAGGTTT
Found at i:7900568 original size:42 final size:42
Alignment explanation
Indices: 7900521--7900654 Score: 105
Period size: 42 Copynumber: 3.1 Consensus size: 42
7900511 AAACGAGAGT
7900521 GGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAA
1 GGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAA
* * * * * * * * *
7900563 GGCAAGATCTGCTATCTTCAACCAGC-TCTACT-ACAA-AC-GAGAGT
1 GGCAAGGT-T--TGTCTTCGATCTGCTTC-GCTGTCAATGCAG-GA-A
7900607 GGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAA
1 GGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAA
7900649 GGCAAG
1 GGCAAG
7900655 ATCTGATAAC
Statistics
Matches: 64, Mismatches: 18, Indels: 20
0.63 0.18 0.20
Matches are distributed among these distances:
41 12 0.19
42 19 0.30
43 8 0.12
44 13 0.20
45 12 0.19
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (42 bp):
GGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAA
Found at i:7901943 original size:6 final size:6
Alignment explanation
Indices: 7901932--7901989 Score: 55
Period size: 6 Copynumber: 9.0 Consensus size: 6
7901922 TTGGCCTCTC
7901932 CTTTTT CTTTTT CTTTTT -TCTTTT CTTTTTT CATTTTTT CATTTTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CT-TTTT C-TTTTT C--TTTTT C-TTTTT CTTTTT
*
7901984 GTTTTT
1 CTTTTT
7901990 TTTCAAGTGA
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
5 1 0.02
6 26 0.57
7 11 0.24
8 8 0.17
ACGTcount: A:0.03, C:0.14, G:0.02, T:0.81
Consensus pattern (6 bp):
CTTTTT
Found at i:7901949 original size:7 final size:7
Alignment explanation
Indices: 7901933--7901993 Score: 65
Period size: 7 Copynumber: 8.9 Consensus size: 7
7901923 TGGCCTCTCC
7901933 TTTTTC-
1 TTTTTCT
7901939 TTTTTCT
1 TTTTTCT
7901946 TTTTTC-
1 TTTTTCT
7901952 -TTTTCT
1 TTTTTCT
7901958 TTTTTCAT
1 TTTTTC-T
*
7901966 TTTTTCA
1 TTTTTCT
7901973 TTTTTCT
1 TTTTTCT
*
7901980 TTTTGTTT
1 TTTT-TCT
7901988 TTTTTC
1 TTTTTC
7901994 AAGTGAAGCA
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
5 5 0.11
6 6 0.13
7 22 0.48
8 13 0.28
ACGTcount: A:0.03, C:0.13, G:0.02, T:0.82
Consensus pattern (7 bp):
TTTTTCT
Found at i:7901976 original size:15 final size:14
Alignment explanation
Indices: 7901933--7901990 Score: 61
Period size: 13 Copynumber: 4.4 Consensus size: 14
7901923 TGGCCTCTCC
7901933 TTTTTC-TTTTTCT
1 TTTTTCATTTTTCT
7901946 TTTTTC--TTTTCT
1 TTTTTCATTTTTCT
*
7901958 TTTTTCATTTTTTCA
1 TTTTTCA-TTTTTCT
*
7901973 TTTTTC-TTTTTGT
1 TTTTTCATTTTTCT
7901986 TTTTT
1 TTTTT
7901991 TTCAAGTGAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
12 12 0.31
13 16 0.41
15 11 0.28
ACGTcount: A:0.03, C:0.12, G:0.02, T:0.83
Consensus pattern (14 bp):
TTTTTCATTTTTCT
Found at i:7903850 original size:62 final size:62
Alignment explanation
Indices: 7903746--7903929 Score: 323
Period size: 62 Copynumber: 3.0 Consensus size: 62
7903736 CTAAACTCGA
* * *
7903746 CGTACTTTTGGATTTTAGGAAATTTATTGTATGCAATGAAATGTAATGTTGATGCATGAACG
1 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAACG
*
7903808 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATAAAATGTAATGTTAATGCATGAACG
1 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAACG
*
7903870 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGAATGAA
1 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAA
7903930 GAGATACATG
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 116 1.00
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.41
Consensus pattern (62 bp):
CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAACG
Found at i:7904521 original size:265 final size:266
Alignment explanation
Indices: 7904047--7904577 Score: 1001
Period size: 265 Copynumber: 2.0 Consensus size: 266
7904037 GCGGATACAT
* *
7904047 ATACGGCTTTGCCCTCATATGCGGAGACATTCTATCATTTTCTTCGTTCGAGCGTTAAGATAAGT
1 ATACGGCTTTGCCCTCATATGCGGAGACATTCGATCATTTTCTTCATTCGAGCGTTAAGATAAGT
7904112 CTCACGAACTCTTCAAAAGGGACGTATCTTATATCTCCTTTTTACTCAATCCGGGCCGTGACTCG
66 CTCACGAACTCTTCAAAAGGGACGTATCTTATATCTCCTTTTTACTCAATCCGGGCCGTGACTCG
*
7904177 TTGCTCACTAAACCTCATGGTGCTCGTTGGCTTCTCTTTTAAAAAAATTCAGCGGCCCTCGAATA
131 TTGCTCACTAAACCTCATAGTGCTCGTTGGCTTCTCTTTTAAAAAAATTCAGCGGCCCTCGAATA
7904242 ATCCTTGTCACATTAAATTCTCGGGCCACGGAGCAATGGTTGTGTGGTCCTCCATTAAACTATCA
196 ATCCTTGTCACATTAAATTCTCGGGCCACGGAGCAATGGTTGTGTGGTCCTCCATTAAACTATCA
7904307 TCCTTC
261 TCCTTC
7904313 ATACGGCTTTGCCCTCATATGCGGAGACATTCGATCATTTTCTTCATTCGAGCGTTAAGATAAGT
1 ATACGGCTTTGCCCTCATATGCGGAGACATTCGATCATTTTCTTCATTCGAGCGTTAAGATAAGT
7904378 CTCACGAACTCTTCAAAAGGGACGTATCTTATATCT-CTTTTTACTCAATCCGGGCCGTGACTCG
66 CTCACGAACTCTTCAAAAGGGACGTATCTTATATCTCCTTTTTACTCAATCCGGGCCGTGACTCG
* * *
7904442 TTGCTCACTAAACCTCATAGTGCTCGTTGGCTTCTCTTTTAAGAAAGTTCAGCGGCTCTCGAATA
131 TTGCTCACTAAACCTCATAGTGCTCGTTGGCTTCTCTTTTAAAAAAATTCAGCGGCCCTCGAATA
7904507 ATCCTTGTCACATTAAATTCTCGGGCCACGGAGCAATGGTTGTGTGGTCCTCCATTAAACTATCA
196 ATCCTTGTCACATTAAATTCTCGGGCCACGGAGCAATGGTTGTGTGGTCCTCCATTAAACTATCA
7904572 TCCTTC
261 TCCTTC
7904578 TCTTATCACG
Statistics
Matches: 259, Mismatches: 6, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
265 160 0.62
266 99 0.38
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (266 bp):
ATACGGCTTTGCCCTCATATGCGGAGACATTCGATCATTTTCTTCATTCGAGCGTTAAGATAAGT
CTCACGAACTCTTCAAAAGGGACGTATCTTATATCTCCTTTTTACTCAATCCGGGCCGTGACTCG
TTGCTCACTAAACCTCATAGTGCTCGTTGGCTTCTCTTTTAAAAAAATTCAGCGGCCCTCGAATA
ATCCTTGTCACATTAAATTCTCGGGCCACGGAGCAATGGTTGTGTGGTCCTCCATTAAACTATCA
TCCTTC
Found at i:7906778 original size:19 final size:17
Alignment explanation
Indices: 7906754--7906870 Score: 59
Period size: 16 Copynumber: 6.9 Consensus size: 17
7906744 TAATATTAGA
7906754 AAAATATATATAATAGTGT
1 AAAATATATATAATA-T-T
7906773 AAAATATAACTAATAATATT
1 AAAATAT-A-T-ATAATATT
*
7906793 AAAATATATACAATGA-T
1 AAAATATATATAAT-ATT
* * *
7906810 AATATATATAAAAGA-T
1 AAAATATATATAATATT
* *
7906826 -ATATGTATAT-ATAATT
1 AAAATATATATAAT-ATT
*
7906842 -ATATA-ATATAATATT
1 AAAATATATATAATATT
7906857 AAAATATA-ATAATA
1 AAAATATATATAATA
7906871 CGATATAAAA
Statistics
Matches: 80, Mismatches: 9, Indels: 21
0.73 0.08 0.19
Matches are distributed among these distances:
14 1 0.01
15 16 0.20
16 19 0.24
17 17 0.21
18 2 0.03
19 8 0.10
20 9 0.11
21 2 0.03
22 6 0.08
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (17 bp):
AAAATATATATAATATT
Found at i:7907083 original size:3 final size:3
Alignment explanation
Indices: 7907068--7907103 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
7907058 AAGCATAAAC
* *
7907068 TAA TAA AAA TAA TAA TAA TAA TAA TAA TAA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7907104 CATTGGAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:7907259 original size:6 final size:6
Alignment explanation
Indices: 7907217--7907250 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
7907207 ATAAAAATAT
*
7907217 ATACTA ATACATA ATAGTA ATACTA ATACTA ATA
1 ATACTA ATAC-TA ATACTA ATACTA ATACTA ATA
7907251 ATACTAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.53, C:0.12, G:0.03, T:0.32
Consensus pattern (6 bp):
ATACTA
Found at i:7907769 original size:11 final size:11
Alignment explanation
Indices: 7907737--7907769 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
7907727 GAAAAAAAAA
7907737 AGAG-AGGGAAG
1 AGAGAAGGG-AG
7907748 AGAGAAGGGAG
1 AGAGAAGGGAG
7907759 AGAGAAGGGAG
1 AGAGAAGGGAG
7907770 GGGGGAAGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (11 bp):
AGAGAAGGGAG
Found at i:7917892 original size:25 final size:24
Alignment explanation
Indices: 7917863--7917932 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 24
7917853 CACATAAATA
*
7917863 AGAAGCTCATTCGAGCCATATAATG
1 AGAAGCTCATT-GAGCCATATAACG
* *
7917888 GGAAGCTCATGTGAGCCATGTAACG
1 AGAAGCTCAT-TGAGCCATATAACG
*
7917913 AGAAGCTCATGAGAGCCATA
1 AGAAGCTCAT-TGAGCCATA
7917933 ATCGGGAAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 37 0.97
26 1 0.03
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (24 bp):
AGAAGCTCATTGAGCCATATAACG
Found at i:7920755 original size:22 final size:23
Alignment explanation
Indices: 7920721--7920782 Score: 63
Period size: 27 Copynumber: 2.6 Consensus size: 23
7920711 ACATACCATA
* *
7920721 CATAATATCCATAT-TAGTATAT
1 CATAAAATACATATATAGTATAT
7920743 CATAAAATACATAACATACTAGTATAT
1 CATAAAATACAT---ATA-TAGTATAT
7920770 CATAAAATACATA
1 CATAAAATACATA
7920783 ACATACATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
22 10 0.30
24 1 0.03
25 2 0.06
27 20 0.61
ACGTcount: A:0.50, C:0.15, G:0.03, T:0.32
Consensus pattern (23 bp):
CATAAAATACATATATAGTATAT
Found at i:7920760 original size:27 final size:27
Alignment explanation
Indices: 7920730--7920788 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
7920720 ACATAATATC
*
7920730 CATATTAGTATATCATAAAATACATAA
1 CATACTAGTATATCATAAAATACATAA
7920757 CATACTAGTATATCATAAAATACATAA
1 CATACTAGTATATCATAAAATACATAA
7920784 CATAC
1 CATAC
7920789 ATAATATACA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.51, C:0.15, G:0.03, T:0.31
Consensus pattern (27 bp):
CATACTAGTATATCATAAAATACATAA
Found at i:7920761 original size:9 final size:9
Alignment explanation
Indices: 7920743--7920798 Score: 51
Period size: 9 Copynumber: 6.2 Consensus size: 9
7920733 ATTAGTATAT
7920743 CATAAAATA
1 CATAAAATA
*
7920752 CATAACATA
1 CATAAAATA
**
7920761 C-TAGTATA
1 CATAAAATA
7920769 TCATAAAATA
1 -CATAAAATA
*
7920779 CATAACATA
1 CATAAAATA
*
7920788 CATAATATA
1 CATAAAATA
7920797 CA
1 CA
7920799 CACTAATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
8 5 0.13
9 28 0.74
10 5 0.13
ACGTcount: A:0.55, C:0.16, G:0.02, T:0.27
Consensus pattern (9 bp):
CATAAAATA
Found at i:7920836 original size:67 final size:66
Alignment explanation
Indices: 7920711--7920840 Score: 163
Period size: 67 Copynumber: 1.9 Consensus size: 66
7920701 AGAGTCTAAC
* * * * * *
7920711 ACATACCATACATAATATCCATATTAGTATATCATAAAATACATAACATACTAGTATATCATAAA
1 ACATAACATACATAATATACACACTAATATATCATAAAATA-ATAACATACTAATATATCATAAA
7920776 AT
65 AT
*
7920778 ACATAACATACATAATATACACACTAATATATCATAACAT-ATAACATACACTAATATATCATA
1 ACATAACATACATAATATACACACTAATATATCATAAAATAATAACAT--ACTAATATATCATA
7920841 TCATTTTTTA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
65 7 0.13
67 47 0.87
ACGTcount: A:0.51, C:0.18, G:0.02, T:0.30
Consensus pattern (66 bp):
ACATAACATACATAATATACACACTAATATATCATAAAATAATAACATACTAATATATCATAAAA
T
Found at i:7935261 original size:17 final size:19
Alignment explanation
Indices: 7935237--7935273 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
7935227 GTAGTACTCG
7935237 ATTTTTTT-TGTCCACTAT
1 ATTTTTTTCTGTCCACTAT
7935255 ATTTTTTTCTGTCCACTAT
1 ATTTTTTTCTGTCCACTAT
7935274 TTTGATACCG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.16, C:0.19, G:0.05, T:0.59
Consensus pattern (19 bp):
ATTTTTTTCTGTCCACTAT
Found at i:7935274 original size:17 final size:17
Alignment explanation
Indices: 7935237--7935276 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
7935227 GTAGTACTCG
7935237 ATTTTTTTTGTCCACTAT
1 ATTTTTTTTGTCCAC-AT
7935255 ATTTTTTTCTGTCCAC-T
1 ATTTTTTT-TGTCCACAT
7935272 ATTTT
1 ATTTT
7935277 GATACCGAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.29
18 8 0.38
19 7 0.33
ACGTcount: A:0.15, C:0.17, G:0.05, T:0.62
Consensus pattern (17 bp):
ATTTTTTTTGTCCACAT
Done.