Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 220 of 344
Found at i:73110414 original size:22 final size:24
Alignment explanation
Indices: 73110365--73110410 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
73110355 TTTTTTTTGT
73110365 TATTATTATATT-TTTTAATATTA
1 TATTATTATATTCTTTTAATATTA
73110388 TATTATATATATTCTTTTAATAT
1 TATTAT-TATATTCTTTTAATAT
73110411 ATTAGGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.29
24 6 0.29
25 9 0.43
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (24 bp):
TATTATTATATTCTTTTAATATTA
Found at i:73110559 original size:25 final size:25
Alignment explanation
Indices: 73110448--73110568 Score: 86
Period size: 25 Copynumber: 4.8 Consensus size: 25
73110438 CGTATATAAT
* * * *
73110448 ACTATTTTATGTATATATCTTTAAT
1 ACTATATTATGTATATATTTTTTAC
* *
73110473 ACTATATTATTTATATTTTTTTTCTAC
1 ACTATATTATGTATA-TATTTTT-TAC
* *
73110500 ATGTTATCTTATGTATATA--TTTTA-
1 A--CTATATTATGTATATATTTTTTAC
* *
73110524 ATTATATTATGTATGTATTTTTTAC
1 ACTATATTATGTATATATTTTTTAC
*
73110549 ACTATATTATGTACATATTT
1 ACTATATTATGTATATATTT
73110569 GTTTTTATAT
Statistics
Matches: 74, Mismatches: 15, Indels: 14
0.72 0.15 0.14
Matches are distributed among these distances:
22 14 0.19
24 6 0.08
25 32 0.43
26 8 0.11
27 2 0.03
28 1 0.01
29 11 0.15
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.58
Consensus pattern (25 bp):
ACTATATTATGTATATATTTTTTAC
Found at i:73110662 original size:25 final size:24
Alignment explanation
Indices: 73110634--73110689 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
73110624 GTTATATTTT
*
73110634 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
73110659 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
73110682 CACTATTA
1 CACTATTA
73110690 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:73111637 original size:141 final size:141
Alignment explanation
Indices: 73111383--73111662 Score: 479
Period size: 141 Copynumber: 2.0 Consensus size: 141
73111373 GACCAAAGGC
*
73111383 CCTGTTTTAGGAAACGAAAATTGATTTATTAAAACAAAGGTGATCCGATCACACCTGATAAAAGA
1 CCTGTTTTAGGAAACGAAAATTGATTTATTAAAACAAAGGTGATCCGATCACACCTAATAAAAGA
* * * *
73111448 TTGGTGGTGACTCCTATTTTAATTTTCACTTTCAAACAAAGTCGATCCCTGTTTTCAACAGAATG
66 TTGGTGGCGACTCCCATTTTAATTTTCACTTTCAAACAAAGTCGATCCCCGTTTTCAAAAGAATG
73111513 GTTTCGACAGT
131 GTTTCGACAGT
* *
73111524 CCTGTTTTAGTAAACTAAAATTGATTTATTAAAACAAAGGTGATCCGATCACACCTAATAAAAGA
1 CCTGTTTTAGGAAACGAAAATTGATTTATTAAAACAAAGGTGATCCGATCACACCTAATAAAAGA
* *
73111589 TTGGTGGCGACTCCCGTTTTAATTTTCACTTTCAAACAAAGTTGATCCCCGTTTTCAAAAGAATG
66 TTGGTGGCGACTCCCATTTTAATTTTCACTTTCAAACAAAGTCGATCCCCGTTTTCAAAAGAATG
73111654 GTTTCGACA
131 GTTTCGACA
73111663 AACTAATAGT
Statistics
Matches: 130, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
141 130 1.00
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (141 bp):
CCTGTTTTAGGAAACGAAAATTGATTTATTAAAACAAAGGTGATCCGATCACACCTAATAAAAGA
TTGGTGGCGACTCCCATTTTAATTTTCACTTTCAAACAAAGTCGATCCCCGTTTTCAAAAGAATG
GTTTCGACAGT
Found at i:73115080 original size:31 final size:31
Alignment explanation
Indices: 73115042--73115104 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
73115032 AATCAGAGTA
73115042 AAAATACTTTTACAACCCTTAAAATGAATTT
1 AAAATACTTTTACAACCCTTAAAATGAATTT
73115073 AAAATACTTTTACAACCCTTAAAATGAATTT
1 AAAATACTTTTACAACCCTTAAAATGAATTT
73115104 A
1 A
73115105 TGGGACCTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.46, C:0.16, G:0.03, T:0.35
Consensus pattern (31 bp):
AAAATACTTTTACAACCCTTAAAATGAATTT
Found at i:73117146 original size:26 final size:26
Alignment explanation
Indices: 73117110--73117162 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
73117100 ATGTTATGTA
73117110 CATGTGAGAAAGAATCTCGTTTGAAC
1 CATGTGAGAAAGAATCTCGTTTGAAC
73117136 CATGTGAGAAAGAATCTCGTTTGAAC
1 CATGTGAGAAAGAATCTCGTTTGAAC
73117162 C
1 C
73117163 TTAGGAATAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (26 bp):
CATGTGAGAAAGAATCTCGTTTGAAC
Found at i:73118677 original size:27 final size:27
Alignment explanation
Indices: 73118647--73118700 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
73118637 AGGGACTTAG
73118647 TTATTTGTTGTATGAGTATTATGAATT
1 TTATTTGTTGTATGAGTATTATGAATT
73118674 TTATTTGTTGTATGAGTATTATGAATT
1 TTATTTGTTGTATGAGTATTATGAATT
73118701 GGTTAAATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.19, T:0.56
Consensus pattern (27 bp):
TTATTTGTTGTATGAGTATTATGAATT
Found at i:73123093 original size:6 final size:6
Alignment explanation
Indices: 73123082--73123111 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
73123072 ACACCGTAGG
*
73123082 GTAACA GTAACA GTAACA GTAATA GTAACA
1 GTAACA GTAACA GTAACA GTAACA GTAACA
73123112 TTTAGGTACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (6 bp):
GTAACA
Found at i:73124934 original size:27 final size:27
Alignment explanation
Indices: 73124841--73124940 Score: 85
Period size: 27 Copynumber: 3.7 Consensus size: 27
73124831 CATCCTGTCA
* * * *
73124841 ACCTTTGTGGTGTACTCTGAATGAATC
1 ACCTTTGTAGCGTACTCTGTATGGATC
* * * *
73124868 ACCTTTATAGTGTACTCTATATAGATGC
1 ACCTTTGTAGCGTACTCTGTATGGAT-C
* * *
73124896 -CATTTCTGGCGTACTCTGTATGGATC
1 ACCTTTGTAGCGTACTCTGTATGGATC
73124922 ACCTTTGTAGCGTACTCTG
1 ACCTTTGTAGCGTACTCTG
73124941 ATTAGATTGC
Statistics
Matches: 56, Mismatches: 15, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
26 1 0.02
27 54 0.96
28 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (27 bp):
ACCTTTGTAGCGTACTCTGTATGGATC
Found at i:73126100 original size:199 final size:199
Alignment explanation
Indices: 73125760--73126158 Score: 798
Period size: 199 Copynumber: 2.0 Consensus size: 199
73125750 GCCGAAATAA
73125760 ATGATGCAAAATAATTGGCTCACAGTAGTTCCTACAAGATTACAAAATACCCATCAATGTATTGT
1 ATGATGCAAAATAATTGGCTCACAGTAGTTCCTACAAGATTACAAAATACCCATCAATGTATTGT
73125825 TATAATGAGCTTACTAAGTACTCATGTACTTACAAGATTTGTTATTTCTTTTTAGGTATTTGAAA
66 TATAATGAGCTTACTAAGTACTCATGTACTTACAAGATTTGTTATTTCTTTTTAGGTATTTGAAA
73125890 GGAAACTTCGCCTGGAGAGACAACGCCAGAAGTTAGTCAAGGTGGTGGCAGAGTGGGCTATTATG
131 GGAAACTTCGCCTGGAGAGACAACGCCAGAAGTTAGTCAAGGTGGTGGCAGAGTGGGCTATTATG
73125955 CATG
196 CATG
73125959 ATGATGCAAAATAATTGGCTCACAGTAGTTCCTACAAGATTACAAAATACCCATCAATGTATTGT
1 ATGATGCAAAATAATTGGCTCACAGTAGTTCCTACAAGATTACAAAATACCCATCAATGTATTGT
73126024 TATAATGAGCTTACTAAGTACTCATGTACTTACAAGATTTGTTATTTCTTTTTAGGTATTTGAAA
66 TATAATGAGCTTACTAAGTACTCATGTACTTACAAGATTTGTTATTTCTTTTTAGGTATTTGAAA
73126089 GGAAACTTCGCCTGGAGAGACAACGCCAGAAGTTAGTCAAGGTGGTGGCAGAGTGGGCTATTATG
131 GGAAACTTCGCCTGGAGAGACAACGCCAGAAGTTAGTCAAGGTGGTGGCAGAGTGGGCTATTATG
73126154 CATG
196 CATG
73126158 A
1 A
73126159 AGTGGAGATT
Statistics
Matches: 200, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
199 200 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (199 bp):
ATGATGCAAAATAATTGGCTCACAGTAGTTCCTACAAGATTACAAAATACCCATCAATGTATTGT
TATAATGAGCTTACTAAGTACTCATGTACTTACAAGATTTGTTATTTCTTTTTAGGTATTTGAAA
GGAAACTTCGCCTGGAGAGACAACGCCAGAAGTTAGTCAAGGTGGTGGCAGAGTGGGCTATTATG
CATG
Found at i:73137542 original size:27 final size:27
Alignment explanation
Indices: 73137504--73137558 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
73137494 GGCTCATTGG
73137504 TATGCTAAGAAAACTAAGTAAAAATTA
1 TATGCTAAGAAAACTAAGTAAAAATTA
73137531 TATGCTAAGAAAACTAAGTAAAAATTA
1 TATGCTAAGAAAACTAAGTAAAAATTA
73137558 T
1 T
73137559 GCATGTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.55, C:0.07, G:0.11, T:0.27
Consensus pattern (27 bp):
TATGCTAAGAAAACTAAGTAAAAATTA
Found at i:73141242 original size:26 final size:25
Alignment explanation
Indices: 73141213--73141271 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
73141203 AAAAAAAAAA
73141213 ATGTTTTTAATGTAAT-GTTTATTATT
1 ATGTTTTTAAT-TAATAG-TTATTATT
* * *
73141239 ATGTTTTCAATTTATAGTTGTTATT
1 ATGTTTTTAATTAATAGTTATTATT
73141264 ATGTTTTT
1 ATGTTTTT
73141272 TTTAATTAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 17 0.61
26 11 0.39
ACGTcount: A:0.24, C:0.02, G:0.12, T:0.63
Consensus pattern (25 bp):
ATGTTTTTAATTAATAGTTATTATT
Found at i:73146815 original size:34 final size:34
Alignment explanation
Indices: 73146772--73146842 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
73146762 CTAATTTTTT
73146772 TTTTTAGTATTGAGAAAGTTGCTCGTGTTGTAAA
1 TTTTTAGTATTGAGAAAGTTGCTCGTGTTGTAAA
73146806 TTTTTAGTATTGAGAAAGTTGCTCGTGTTGTAAA
1 TTTTTAGTATTGAGAAAGTTGCTCGTGTTGTAAA
73146840 TTT
1 TTT
73146843 ACACATTGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.25, C:0.06, G:0.23, T:0.46
Consensus pattern (34 bp):
TTTTTAGTATTGAGAAAGTTGCTCGTGTTGTAAA
Found at i:73149220 original size:16 final size:16
Alignment explanation
Indices: 73149199--73149235 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
73149189 TTGTAATATT
73149199 ATTATATGTTAAAAAG
1 ATTATATGTTAAAAAG
73149215 ATTATATGTTAAAAAG
1 ATTATATGTTAAAAAG
73149231 ATTAT
1 ATTAT
73149236 GTATTGTGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.41
Consensus pattern (16 bp):
ATTATATGTTAAAAAG
Found at i:73154235 original size:5 final size:5
Alignment explanation
Indices: 73154225--73154263 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
73154215 TTGAAGTAGA
* *
73154225 AGAAG AGAAG AAAAG AGAAG AGAAG AGAAG AGAAA AGAA
1 AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG AGAA
73154264 AATAGTTGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (5 bp):
AGAAG
Found at i:73156745 original size:9 final size:9
Alignment explanation
Indices: 73156733--73156757 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
73156723 ATTTTTAAAT
73156733 CTTCTTCTA
1 CTTCTTCTA
73156742 CTTCTTCTA
1 CTTCTTCTA
73156751 CTTCTTC
1 CTTCTTC
73156758 CTCTATTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.36, G:0.00, T:0.56
Consensus pattern (9 bp):
CTTCTTCTA
Found at i:73157188 original size:29 final size:30
Alignment explanation
Indices: 73157149--73157217 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
73157139 ACGATAACGT
* **
73157149 AAGTGACTAAAACGTAACTT-TTCAAACAA
1 AAGTGACTAAAACATAACTTAGACAAACAA
*
73157178 AAGTGACTAAAATATAACTTGAGACAAACAA
1 AAGTGACTAAAACATAACTT-AGACAAACAA
73157209 AAGTGACTA
1 AAGTGACTA
73157218 TTTTGGTAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 18 0.53
31 16 0.47
ACGTcount: A:0.51, C:0.14, G:0.13, T:0.22
Consensus pattern (30 bp):
AAGTGACTAAAACATAACTTAGACAAACAA
Found at i:73161873 original size:33 final size:32
Alignment explanation
Indices: 73161810--73161873 Score: 76
Period size: 33 Copynumber: 1.9 Consensus size: 32
73161800 ATTGTTAAAC
* *
73161810 ATAAATATTTAATTATTTATATTTAGTCATATA
1 ATAAATAATTAATTATTAATATTTA-TCATATA
73161843 ATAAATAATTAATATAATTAATATTT-TCATA
1 ATAAATAATTAAT-T-ATTAATATTTATCATA
73161874 AATTATTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 17 0.63
34 1 0.04
35 9 0.33
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (32 bp):
ATAAATAATTAATTATTAATATTTATCATATA
Found at i:73161912 original size:13 final size:14
Alignment explanation
Indices: 73161896--73161937 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
73161886 TTTCAATTTT
73161896 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
73161909 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
73161924 ATTTTAAATAATAT
1 ATTTT-AATAATAT
73161938 TCTTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:73161922 original size:16 final size:16
Alignment explanation
Indices: 73161900--73161936 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
73161890 AATTTTATTT
73161900 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
73161917 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
73161932 TAATA
1 TAATA
73161937 TTCTTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:73162004 original size:34 final size:32
Alignment explanation
Indices: 73161958--73162024 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 32
73161948 TTATTGAAAA
* * *
73161958 TATTCAATATAAATATTTTAATAATAGATATT
1 TATTCAATATAAATATATAAATAATAAATATT
73161990 TATTACAATTATAAATATATAAATAATAAATATT
1 TATT-CAA-TATAAATATATAAATAATAAATATT
73162024 T
1 T
73162025 TATAGTATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
32 4 0.13
33 3 0.10
34 23 0.77
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (32 bp):
TATTCAATATAAATATATAAATAATAAATATT
Found at i:73162701 original size:5 final size:5
Alignment explanation
Indices: 73162685--73162720 Score: 54
Period size: 5 Copynumber: 6.8 Consensus size: 5
73162675 CTGTGTATCC
73162685 TCCTT CTCCTT TCCTT TCCTT TCCTT TCCCTT TCCT
1 TCCTT -TCCTT TCCTT TCCTT TCCTT T-CCTT TCCT
73162721 CCTCCTAGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 19 0.66
6 10 0.34
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (5 bp):
TCCTT
Found at i:73162716 original size:11 final size:10
Alignment explanation
Indices: 73162685--73162720 Score: 54
Period size: 11 Copynumber: 3.4 Consensus size: 10
73162675 CTGTGTATCC
73162685 TCCTTCTCCTT
1 TCCTT-TCCTT
73162696 TCCTTTCCTT
1 TCCTTTCCTT
73162706 TCCTTTCCCTT
1 TCCTTT-CCTT
73162717 TCCT
1 TCCT
73162721 CCTCCTAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 11 0.46
11 13 0.54
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (10 bp):
TCCTTTCCTT
Found at i:73162716 original size:16 final size:16
Alignment explanation
Indices: 73162685--73162726 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
73162675 CTGTGTATCC
73162685 TCCTTCTCCTTTCCTT
1 TCCTTCTCCTTTCCTT
73162701 TCCTT-TCCTTTCCCTT
1 TCCTTCTCCTTT-CCTT
*
73162717 TCCTCCTCCT
1 TCCTTCTCCT
73162727 AGTTTTTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 6 0.26
16 13 0.57
17 4 0.17
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (16 bp):
TCCTTCTCCTTTCCTT
Found at i:73173727 original size:23 final size:23
Alignment explanation
Indices: 73173697--73173743 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
73173687 CATAGCTTAA
73173697 TGCAACTCAATTTAATCCATAAG
1 TGCAACTCAATTTAATCCATAAG
73173720 TGCAACTCAATTTAATCCATAAG
1 TGCAACTCAATTTAATCCATAAG
73173743 T
1 T
73173744 CTAACACATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (23 bp):
TGCAACTCAATTTAATCCATAAG
Found at i:73184133 original size:27 final size:27
Alignment explanation
Indices: 73184002--73184132 Score: 165
Period size: 27 Copynumber: 4.9 Consensus size: 27
73183992 ATTACCGAAG
* * *
73184002 TACCATCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
73184029 TACTCTCGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
*
73184056 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
73184083 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
73184110 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
73184133 AAAATACCAT
Statistics
Matches: 89, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
27 88 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:73184140 original size:27 final size:27
Alignment explanation
Indices: 73184056--73184384 Score: 143
Period size: 27 Copynumber: 12.2 Consensus size: 27
73184046 ATTATCGTTT
* ****
73184056 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * * ***
73184083 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
*
73184110 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * * *
73184137 TACCATTGGTTTACAAAATTA-TCAAAA
1 TACCCTCGATTTATAAAATTACT-AAAA
* *
73184164 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACTAAAA
* * * *
73184191 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * **
73184217 TACCC-CTGGTTTGTAAAATTACCGAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* * *
73184244 TACCCTCAATTTGTAAAA-TAATCAAAA
1 TACCCTCGATTTATAAAATTACT-AAAA
* * *
73184271 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACTAAAA
* * * **
73184298 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTATAAAATTACTAAAA
* * * *
73184325 TACTCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
73184352 TACCCTTGATTTACAAAGTTAC-AGAAA
1 TACCCTCGATTTATAAAATTACTA-AAA
73184379 TACCCT
1 TACCCT
73184385 TGACTTTCTA
Statistics
Matches: 237, Mismatches: 51, Indels: 28
0.75 0.16 0.09
Matches are distributed among these distances:
26 28 0.12
27 205 0.86
28 4 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTAAAA
Found at i:73184150 original size:54 final size:54
Alignment explanation
Indices: 73184036--73184157 Score: 138
Period size: 54 Copynumber: 2.3 Consensus size: 54
73184026 TTTTACTCTC
* * * **** *
73184036 GATTTACAAAATTA-TCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTT
1 GATTTACAAAATTACT-ATTTTACCCTCGATTTACAAAATTACTAAAATACCATT
*
73184090 GATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCATT
1 GATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCATT
*
73184144 GGTTTACAAAATTA
1 GATTTACAAAATTA
73184158 TCAAAATACC
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
54 55 0.98
55 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.08, T:0.40
Consensus pattern (54 bp):
GATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCATT
Found at i:73184168 original size:54 final size:54
Alignment explanation
Indices: 73184110--73184428 Score: 216
Period size: 54 Copynumber: 5.9 Consensus size: 54
73184100 ATTACTATTT
** *
73184110 TACCCTCGATTTACAAAATTACTAAAATACCATTGGTTTACAAAATTATCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCATTGGTTTACAAAATTATCAAAA
** * * * ** *
73184164 TACCCTCGATCAGTAAAATTACCAAAATACC-CTAGTCTGTAAAATT-GCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCATTGGTTTACAAAATTATC-AAAA
* * * *** ** *
73184217 TACCC-CTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATAATCAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAATACCATTGGTTTACAAAATTATCAAAA
* * *** * *
73184271 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAATACCATTGGTTTACAAAATTATCAAAA
* * * * *
73184325 TACTCTCAATTTGTAAAATTACCAAAATACCCTTGATTTACAAAGTTA-CAGAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCATTGGTTTACAAAATTATCA-AAA
* * ***
73184379 TACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTACAAAATTA
1 TACCCTCGA-TTTGT-AAAATTACCAAAATACCATTGGTTTACAAAATTA
73184429 ATTTACCAAA
Statistics
Matches: 203, Mismatches: 53, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
52 2 0.01
53 40 0.20
54 126 0.62
55 7 0.03
56 28 0.14
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTGTAAAATTACCAAAATACCATTGGTTTACAAAATTATCAAAA
Found at i:73184195 original size:81 final size:81
Alignment explanation
Indices: 73184110--73184382 Score: 291
Period size: 81 Copynumber: 3.4 Consensus size: 81
73184100 ATTACTATTT
* ** * * * *
73184110 TACCCTCGATTTACAAAATTACTAAAATACCATTGGTTTACAAAATTATCAAAATACCCTCGATC
1 TACCCTCGATTTACAAAATTACTAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATT
*
73184175 AGTAAAATTACCAAAA
66 TGTAAAATTACCAAAA
* * ** * *
73184191 TACCCTAG-TCTGTAAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCGAAATACCCTCAATT
1 TACCCTCGATTTACAAAATTACTAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATT
* *
73184255 TGTAAAATAATCAAAA
66 TGTAAAATTACCAAAA
* ** * * *
73184271 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACTCTCAAT
1 TACCCTCGA-TTTACAAAATTACTAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAAT
73184335 TTGTAAAATTACCAAAA
65 TTGTAAAATTACCAAAA
* *
73184352 TACCCTTGATTTACAAAGTTAC-AGAAATACC
1 TACCCTCGATTTACAAAATTACTA-AAATACC
73184383 CTTGACTTTC
Statistics
Matches: 157, Mismatches: 31, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
80 63 0.40
81 93 0.59
82 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACTAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATT
TGTAAAATTACCAAAA
Found at i:73184508 original size:27 final size:27
Alignment explanation
Indices: 73184465--73184537 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
73184455 AAATGACTAA
*
73184465 AATACCCCTATTA-GGTAAAGAGACCGT
1 AATACCCCT-GTAGGGTAAAGAGACCGT
*
73184492 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAGAGACCGT
* *
73184519 AATACCCTTGTATGGTAAA
1 AATACCCCTGTAGGGTAAA
73184538 ATGACGAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
26 3 0.08
27 35 0.90
28 1 0.03
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAGAGACCGT
Found at i:73185379 original size:26 final size:26
Alignment explanation
Indices: 73185343--73185543 Score: 325
Period size: 26 Copynumber: 7.8 Consensus size: 26
73185333 GAGGAAGTGC
**
73185343 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
73185369 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
73185395 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
73185421 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
73185447 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
73185473 AAAAGGGCTTATGCACCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
73185499 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
73185524 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
73185544 ATTAAAGAGG
Statistics
Matches: 163, Mismatches: 12, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
25 32 0.20
26 131 0.80
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:73185472 original size:78 final size:78
Alignment explanation
Indices: 73185343--73185543 Score: 361
Period size: 78 Copynumber: 2.6 Consensus size: 78
73185333 GAGGAAGTGC
**
73185343 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATG
*
73185408 CCCCAGTTTATTG
66 CACCAGTTTATTG
73185421 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATG
73185486 CACCAGTTTATTG
66 CACCAGTTTATTG
73185499 AAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTT
73185544 ATTAAAGAGG
Statistics
Matches: 120, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
76 10 0.08
77 25 0.21
78 85 0.71
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (78 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATG
CACCAGTTTATTG
Found at i:73185753 original size:42 final size:42
Alignment explanation
Indices: 73185688--73185779 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
73185678 TAGTCTCCCT
* * ** * *
73185688 AAATAGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACACGTGATATTG
73185730 AAATGGGCTTGCATACATCCATTGACATTACACGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACACGTGATATTG
73185772 AAATGGGC
1 AAATGGGC
73185780 CTAAGGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACACGTGATATTG
Found at i:73185880 original size:31 final size:31
Alignment explanation
Indices: 73185803--73185881 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
73185793 CGTTTACAGT
* *
73185803 AAAGGCTTCAGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
73185834 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
73185865 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
73185882 AACCATTCAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:73192896 original size:26 final size:26
Alignment explanation
Indices: 73192860--73192967 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
73192850 TGAAGTTTCA
73192860 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
73192886 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
73192912 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
73192938 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
73192964 ATCA
1 ATCA
73192968 ATTTGTACCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:73195811 original size:26 final size:26
Alignment explanation
Indices: 73195778--73195828 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
73195768 ATACTTTATT
73195778 CCTCAATCTATTACTCAATTTGTTCG
1 CCTCAATCTATTACTCAATTTGTTCG
73195804 CCTCAATCTATTACTCAATTTGTTC
1 CCTCAATCTATTACTCAATTTGTTC
73195829 CTTTTTCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.27, G:0.06, T:0.43
Consensus pattern (26 bp):
CCTCAATCTATTACTCAATTTGTTCG
Found at i:73196317 original size:46 final size:46
Alignment explanation
Indices: 73196221--73196333 Score: 127
Period size: 46 Copynumber: 2.5 Consensus size: 46
73196211 TCCGTGGTGT
* * *** * * * *
73196221 CTTTCAGCCATGGTCTTATTCATTTTTTGTCATGTTGTCATTGTGT
1 CTTTCAACTATGGTCTTATTCATTTTCCATCATATTGCCATAGTGC
* *
73196267 CTTTCAACTTTGGTCTTATTCATTTTCCATCTTATTGCCATAGTGC
1 CTTTCAACTATGGTCTTATTCATTTTCCATCATATTGCCATAGTGC
73196313 CTTTCAACTATGGTCTTATTC
1 CTTTCAACTATGGTCTTATTC
73196334 GTTTGATTCG
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 55 1.00
ACGTcount: A:0.16, C:0.21, G:0.13, T:0.50
Consensus pattern (46 bp):
CTTTCAACTATGGTCTTATTCATTTTCCATCATATTGCCATAGTGC
Found at i:73196422 original size:45 final size:45
Alignment explanation
Indices: 73196344--73196468 Score: 135
Period size: 45 Copynumber: 2.8 Consensus size: 45
73196334 GTTTGATTCG
* * *
73196344 TGATGCCATAGTGTCTTTCGGCTATTA-TTTTACTCAATAAAATCA
1 TGATGCCATAGCGTCTTTCAGCTA-TAGTCTTACTCAATAAAATCA
* ** * *
73196389 TGATGCCATAGCGTCTTTCAGCTATGGTCTTACTTGATACAATCG
1 TGATGCCATAGCGTCTTTCAGCTATAGTCTTACTCAATAAAATCA
* * *
73196434 TGATGCCATAACATCTTTCAACTATAGTCTTACTC
1 TGATGCCATAGCGTCTTTCAGCTATAGTCTTACTC
73196469 GTTTCTAGTA
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
44 1 0.02
45 65 0.98
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (45 bp):
TGATGCCATAGCGTCTTTCAGCTATAGTCTTACTCAATAAAATCA
Found at i:73198014 original size:14 final size:14
Alignment explanation
Indices: 73197995--73198022 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
73197985 TCGCTGATAC
73197995 GGCAAGGTGTCTAG
1 GGCAAGGTGTCTAG
73198009 GGCAAGGTGTCTAG
1 GGCAAGGTGTCTAG
73198023 ATCACTATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.43, T:0.21
Consensus pattern (14 bp):
GGCAAGGTGTCTAG
Found at i:73201171 original size:46 final size:46
Alignment explanation
Indices: 73201100--73201247 Score: 226
Period size: 46 Copynumber: 3.2 Consensus size: 46
73201090 ATAGTGTTGT
* *
73201100 TAGGATATTATTATTAGATTTTATTTTTTACCAATTTGATTCATAA
1 TAGGATATTATTATTAGATATTATTTTTTAGCAATTTGATTCATAA
* *
73201146 TAGGATATTATTATTAGATACTATTTTTTAGCAATTTGATTCTTAA
1 TAGGATATTATTATTAGATATTATTTTTTAGCAATTTGATTCATAA
* * *
73201192 TAGGATATTATTATTAGATATTATCTTTTAGAAATTTGATTCCTAA
1 TAGGATATTATTATTAGATATTATTTTTTAGCAATTTGATTCATAA
73201238 TA-GATATTAT
1 TAGGATATTAT
73201248 AGGATTTTAT
Statistics
Matches: 94, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
45 8 0.09
46 86 0.91
ACGTcount: A:0.34, C:0.06, G:0.10, T:0.50
Consensus pattern (46 bp):
TAGGATATTATTATTAGATATTATTTTTTAGCAATTTGATTCATAA
Found at i:73204454 original size:15 final size:16
Alignment explanation
Indices: 73204421--73204454 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
73204411 TTATGTTTTC
73204421 AAATGAAATAATGTAA
1 AAATGAAATAATGTAA
*
73204437 AAATTAAATAAT-TAA
1 AAATGAAATAATGTAA
73204452 AAA
1 AAA
73204455 GAATAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (16 bp):
AAATGAAATAATGTAA
Found at i:73205292 original size:24 final size:24
Alignment explanation
Indices: 73205265--73205343 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
73205255 AGCAAAAACC
73205265 ATAATTGAAAGATGTCATGACATT
1 ATAATTGAAAGATGTCATGACATT
* * ** * *
73205289 ATAATCGAAA-AGGAAAAGAC--C
1 ATAATTGAAAGATGTCATGACATT
* *
73205310 ATGATTGAAAGATATCATGACATT
1 ATAATTGAAAGATGTCATGACATT
73205334 ATAATTGAAA
1 ATAATTGAAA
73205344 AGGAAAAGAC
Statistics
Matches: 37, Mismatches: 15, Indels: 6
0.64 0.26 0.10
Matches are distributed among these distances:
21 8 0.22
22 5 0.14
23 6 0.16
24 18 0.49
ACGTcount: A:0.48, C:0.09, G:0.16, T:0.27
Consensus pattern (24 bp):
ATAATTGAAAGATGTCATGACATT
Found at i:73205419 original size:45 final size:45
Alignment explanation
Indices: 73205251--73205413 Score: 231
Period size: 45 Copynumber: 3.6 Consensus size: 45
73205241 CTTTTTTTGA
* * * *
73205251 GAAAAGCAAAA-ACCATAATTGAAAGATGTCATGACATTATAATC
1 GAAAAGGAAAAGACCATGATTGAAAGATATCATGACATTATAATT
73205295 GAAAAGGAAAAGACCATGATTGAAAGATATCATGACATTATAATT
1 GAAAAGGAAAAGACCATGATTGAAAGATATCATGACATTATAATT
* * *
73205340 GAAAAGGAAAAGACCATGATTAAAAGATATTATGGCATTATAATT
1 GAAAAGGAAAAGACCATGATTGAAAGATATCATGACATTATAATT
*
73205385 GAAAAGGAAAATACCAT-AGTTGAAAGATA
1 GAAAAGGAAAAGACCATGA-TTGAAAGATA
73205414 CTATGGTATT
Statistics
Matches: 108, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
44 11 0.10
45 97 0.90
ACGTcount: A:0.50, C:0.09, G:0.17, T:0.23
Consensus pattern (45 bp):
GAAAAGGAAAAGACCATGATTGAAAGATATCATGACATTATAATT
Found at i:73207702 original size:12 final size:12
Alignment explanation
Indices: 73207685--73207709 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73207675 GCTGACTACT
73207685 GTTACTGTTACC
1 GTTACTGTTACC
73207697 GTTACTGTTACC
1 GTTACTGTTACC
73207709 G
1 G
73207710 ATTCGGCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:73207809 original size:47 final size:47
Alignment explanation
Indices: 73207744--73207856 Score: 181
Period size: 47 Copynumber: 2.4 Consensus size: 47
73207734 TTGTTACTAT
* *
73207744 TACCGTTACTGTTACTGTTTCGGATTTGTTTCGATGAGGTACTCCGTG
1 TACCG-TACTGTTACTGTTCCGGATTTGTTCCGATGAGGTACTCCGTG
*
73207792 TACCGTACTGTTACTGTTCCGGATTTGTTCCGATGAGGTACTCTGTG
1 TACCGTACTGTTACTGTTCCGGATTTGTTCCGATGAGGTACTCCGTG
*
73207839 TACCGTACTGCTACTGTT
1 TACCGTACTGTTACTGTT
73207857 ACTATTACTG
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
47 56 0.92
48 5 0.08
ACGTcount: A:0.15, C:0.21, G:0.24, T:0.40
Consensus pattern (47 bp):
TACCGTACTGTTACTGTTCCGGATTTGTTCCGATGAGGTACTCCGTG
Found at i:73208043 original size:18 final size:18
Alignment explanation
Indices: 73207987--73208150 Score: 78
Period size: 18 Copynumber: 8.7 Consensus size: 18
73207977 TAGAAAGATG
73207987 GATTGTTACTGAATAATTT
1 GATTGTTACTGAATAA-TT
* * * *
73208006 AATTATTACTGTATATTT
1 GATTGTTACTGAATAATT
*
73208024 GATTTTTACTGAATAATT
1 GATTGTTACTGAATAATT
*
73208042 GACTGTTACTGGATAACCGATCAATT
1 GATTGTTACT-G---A---AT-AATT
* *
73208068 GATTGATACTGAATAACT
1 GATTGTTACTGAATAATT
* *
73208086 GATTATTATTGAATAATT
1 GATTGTTACTGAATAATT
* * *
73208104 TATTGTTACCGAATAACT
1 GATTGTTACTGAATAATT
* * * *
73208122 GACTATTACTAAATAAAT
1 GATTGTTACTGAATAATT
*
73208140 AATTGTT-CTGA
1 GATTGTTACTGA
73208151 TTGACTGATC
Statistics
Matches: 105, Mismatches: 32, Indels: 18
0.68 0.21 0.12
Matches are distributed among these distances:
17 3 0.03
18 70 0.67
19 15 0.14
22 2 0.02
25 3 0.03
26 12 0.11
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42
Consensus pattern (18 bp):
GATTGTTACTGAATAATT
Found at i:73208137 original size:36 final size:36
Alignment explanation
Indices: 73208064--73208146 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 36
73208054 ATAACCGATC
* * * * * *
73208064 AATTGATTGATACTGAATAACTGATTATTATTGAAT
1 AATTAATTGTTACCGAATAACTGACTATTACTAAAT
*
73208100 AATTTATTGTTACCGAATAACTGACTATTACTAAAT
1 AATTAATTGTTACCGAATAACTGACTATTACTAAAT
*
73208136 AAATAATTGTT
1 AATTAATTGTT
73208147 CTGATTGACT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.41
Consensus pattern (36 bp):
AATTAATTGTTACCGAATAACTGACTATTACTAAAT
Found at i:73214304 original size:17 final size:17
Alignment explanation
Indices: 73214282--73214324 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
73214272 AAAGTATCTC
*
73214282 CTTTAGGTTTATTTGCA
1 CTTTAGGTCTATTTGCA
73214299 CTTTAGGTCTATTTGCA
1 CTTTAGGTCTATTTGCA
73214316 CTTTAGGTC
1 CTTTAGGTC
73214325 CTTCCTCATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.19, T:0.49
Consensus pattern (17 bp):
CTTTAGGTCTATTTGCA
Found at i:73215252 original size:22 final size:22
Alignment explanation
Indices: 73215224--73215268 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
73215214 AGCTTACAAA
73215224 AAGGACCAAGCCTGATAAAAAG
1 AAGGACCAAGCCTGATAAAAAG
*
73215246 AAGGACCAAGCCTTATAAAAAG
1 AAGGACCAAGCCTGATAAAAAG
73215268 A
1 A
73215269 GGTGTGTGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.51, C:0.18, G:0.20, T:0.11
Consensus pattern (22 bp):
AAGGACCAAGCCTGATAAAAAG
Found at i:73220970 original size:3 final size:3
Alignment explanation
Indices: 73220955--73221004 Score: 64
Period size: 3 Copynumber: 16.3 Consensus size: 3
73220945 AATATATATA
* **
73220955 ATT ATT ATA ATT ATT AACC ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
73221001 ATT A
1 ATT A
73221005 AATAAAGTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
3 39 0.98
4 1 0.03
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:73222698 original size:20 final size:21
Alignment explanation
Indices: 73222660--73222699 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
73222650 GCATGACGGT
*
73222660 AAGTTGGGCCTCGATGGGCTG
1 AAGTTGGGCCTCAATGGGCTG
73222681 AAGTTGGGCC-CAATGGGCT
1 AAGTTGGGCCTCAATGGGCT
73222700 TTCGGGCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.17, C:0.20, G:0.40, T:0.23
Consensus pattern (21 bp):
AAGTTGGGCCTCAATGGGCTG
Found at i:73222708 original size:17 final size:17
Alignment explanation
Indices: 73222686--73222726 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
73222676 GGCTGAAGTT
73222686 GGGCCCAATGGGCTTTC
1 GGGCCCAATGGGCTTTC
73222703 GGGCCCAATGGGCTTTC
1 GGGCCCAATGGGCTTTC
*
73222720 TGGCCCA
1 GGGCCCA
73222727 TTTGGGTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.12, C:0.32, G:0.34, T:0.22
Consensus pattern (17 bp):
GGGCCCAATGGGCTTTC
Found at i:73224688 original size:27 final size:27
Alignment explanation
Indices: 73224657--73224834 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
73224647 TAAATTGTAC
73224657 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
73224684 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73224710 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
73224738 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
73224766 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73224793 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
73224820 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73224835 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:73224771 original size:82 final size:81
Alignment explanation
Indices: 73224658--73224813 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
73224648 AAATTGTACA
* *
73224658 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
73224722 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
73224739 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
73224804 TGCGAGTTGA
65 TGCGAATTGA
73224814 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:73224825 original size:82 final size:81
Alignment explanation
Indices: 73224654--73224834 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
73224644 GATTAAATTG
* *
73224654 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
73224719 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
73224735 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
73224799 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
73224817 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
73224835 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:73241539 original size:27 final size:27
Alignment explanation
Indices: 73241508--73241685 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
73241498 TAAATTGTAC
73241508 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
73241535 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73241561 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
73241589 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
73241617 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73241644 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
73241671 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73241686 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:73241622 original size:82 final size:81
Alignment explanation
Indices: 73241509--73241664 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
73241499 AAATTGTACA
* *
73241509 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
73241573 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
73241590 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
73241655 TGCGAGTTGA
65 TGCGAATTGA
73241665 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:73241676 original size:82 final size:81
Alignment explanation
Indices: 73241505--73241685 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
73241495 GATTAAATTG
* *
73241505 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
73241570 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
73241586 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
73241650 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
73241668 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
73241686 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:73243300 original size:9 final size:10
Alignment explanation
Indices: 73243288--73243344 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
73243278 TATGTGGGAT
73243288 ATGATAT-AC
1 ATGATATGAC
*
73243297 ATGAT-TGAT
1 ATGATATGAC
73243306 ATGATATGCAC
1 ATGATATG-AC
*
73243317 ATGATATG-T
1 ATGATATGAC
73243326 ATGATATGCAC
1 ATGATATG-AC
73243337 ATGATATG
1 ATGATATG
73243345 TATGAAATGC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (10 bp):
ATGATATGAC
Found at i:73243320 original size:20 final size:20
Alignment explanation
Indices: 73243287--73243361 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
73243277 ATATGTGGGA
73243287 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
73243304 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
73243325 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
73243345 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
73243362 GTAATCATAA
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 8 0.15
20 43 0.81
21 2 0.04
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:73243322 original size:11 final size:11
Alignment explanation
Indices: 73243306--73243361 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
73243296 CATGATTGAT
73243306 ATGATATGCAC
1 ATGATATGCAC
*
73243317 ATGATATG--T
1 ATGATATGCAC
73243326 ATGATATGCAC
1 ATGATATGCAC
*
73243337 ATGATATG--T
1 ATGATATGCAC
*
73243346 ATGAAATGCAC
1 ATGATATGCAC
73243357 ATGAT
1 ATGAT
73243362 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:73243482 original size:25 final size:26
Alignment explanation
Indices: 73243411--73243482 Score: 110
Period size: 26 Copynumber: 2.8 Consensus size: 26
73243401 GAGGAAGTGC
* * *
73243411 AAAAGAGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
73243437 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
73243463 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
73243483 ATTAAAGAGG
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
25 10 0.23
26 33 0.77
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:73245476 original size:40 final size:40
Alignment explanation
Indices: 73245430--73245515 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
73245420 AATTATGGGA
** *
73245430 TACTGAATATTGTTTTGAATACCGAATTGAACTGTGAAAT
1 TACTGAATATTGTTACGAATACCGAATTGAACTGTAAAAT
* * *
73245470 TACTGAATATTGTTACGTATACTGCATTGAACTGTAAAAT
1 TACTGAATATTGTTACGAATACCGAATTGAACTGTAAAAT
*
73245510 TTCTGA
1 TACTGA
73245516 TGAAACGAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (40 bp):
TACTGAATATTGTTACGAATACCGAATTGAACTGTAAAAT
Found at i:73245784 original size:6 final size:6
Alignment explanation
Indices: 73245773--73245816 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
73245763 GTGTGTCGAA
* * *
73245773 TACTGT TACTGT TACGGT TACTGC TACCGT TACTGAT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTG-T TACTGT T
73245817 TAGGTACTGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.18, C:0.20, G:0.18, T:0.43
Consensus pattern (6 bp):
TACTGT
Found at i:73249763 original size:147 final size:147
Alignment explanation
Indices: 73249496--73249790 Score: 572
Period size: 147 Copynumber: 2.0 Consensus size: 147
73249486 TCTGTTAAAA
*
73249496 TCATGAGAATTTTACCATAAAAGAATCTATGAGAAAATATATTTAATATTTCCACATTCAATGAT
1 TCATGAGAACTTTACCATAAAAGAATCTATGAGAAAATATATTTAATATTTCCACATTCAATGAT
*
73249561 TCACTATGACCAAATGATTTATTTCCATTTTTGAACTTCATTTATTAGAAAAACATATATTCAAT
66 TCACTATGAACAAATGATTTATTTCCATTTTTGAACTTCATTTATTAGAAAAACATATATTCAAT
73249626 TTTCAGGCCATTTTTAT
131 TTTCAGGCCATTTTTAT
73249643 TCATGAGAACTTTACCATAAAAGAATCTATGAGAAAATATATTTAATATTTCCACATTCAATGAT
1 TCATGAGAACTTTACCATAAAAGAATCTATGAGAAAATATATTTAATATTTCCACATTCAATGAT
73249708 TCACTATGAACAAATGATTTATTTCCATTTTTGAACTTCATTTATTAGAAAAACATATATTCAAT
66 TCACTATGAACAAATGATTTATTTCCATTTTTGAACTTCATTTATTAGAAAAACATATATTCAAT
73249773 TTTCAGGCCATTTTTAT
131 TTTCAGGCCATTTTTAT
73249790 T
1 T
73249791 TTTCATTTTC
Statistics
Matches: 146, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
147 146 1.00
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.40
Consensus pattern (147 bp):
TCATGAGAACTTTACCATAAAAGAATCTATGAGAAAATATATTTAATATTTCCACATTCAATGAT
TCACTATGAACAAATGATTTATTTCCATTTTTGAACTTCATTTATTAGAAAAACATATATTCAAT
TTTCAGGCCATTTTTAT
Found at i:73252434 original size:19 final size:19
Alignment explanation
Indices: 73252399--73252496 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
73252389 AGATTACAAG
73252399 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
73252420 ATTATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
73252439 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
73252456 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
73252475 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
73252494 ATC
1 ATC
73252497 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.66
20 1 0.01
21 7 0.10
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:73252467 original size:36 final size:37
Alignment explanation
Indices: 73252399--73252496 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
73252389 AGATTACAAG
*
73252399 ATCATATCTTCAAGATTGCATATTATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
73252439 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
73252475 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
73252497 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:73252954 original size:46 final size:46
Alignment explanation
Indices: 73252887--73253058 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
73252877 GTAACCCGCC
* *
73252887 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATT
1 CATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCACATT
*
73252933 CATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACA-T
1 CATAAGCGAACTCAGACTCAACTCAACGAGCTCGG--G-C--GTTCACATT
* * * * * * *
73252982 C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCACATC
1 CATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCACATT
* *
73253026 CAAAAGTGAACTCAGACTCAACTCAACGAGCTC
1 CATAAGCGAACTCAGACTCAACTCAACGAGCTC
73253059 AGATGCCCAA
Statistics
Matches: 100, Mismatches: 17, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 56 0.56
47 25 0.25
48 3 0.03
49 3 0.03
50 2 0.02
51 3 0.03
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
CATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCACATT
Found at i:73253001 original size:93 final size:93
Alignment explanation
Indices: 73252893--73253065 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
73252883 CGCCCATAAG
* * * * *
73252893 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATTCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCAAAAGTGAACTCAGACTCAACTCA
*
73252958 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCAGATGCCTAGTTACATCTCA
* *
73252986 CGAACTCGGACTCAACTCAACGAGTTTGGACATTCACATCCAAAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCAAAAGTGAACTCAGACTCAACTCA
73253051 ACGAGCTCAGATGCC
66 ACGAGCTCAGATGCC
73253066 CAAATATCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCAAAAGTGAACTCAGACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATCTCA
Found at i:73255054 original size:33 final size:33
Alignment explanation
Indices: 73255012--73255078 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
73255002 AGGATTTAGG
73255012 TATGTCACACTATGAACGTTACAAGTGAATAAA
1 TATGTCACACTATGAACGTTACAAGTGAATAAA
73255045 TATGTCACACTATGAACGTTACAAGTGAATAAA
1 TATGTCACACTATGAACGTTACAAGTGAATAAA
73255078 T
1 T
73255079 CCATAAACGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (33 bp):
TATGTCACACTATGAACGTTACAAGTGAATAAA
Found at i:73261753 original size:18 final size:18
Alignment explanation
Indices: 73261730--73261764 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
73261720 TGGTTCGTTG
73261730 TTCTTTTTTTTTCTTTCT
1 TTCTTTTTTTTTCTTTCT
*
73261748 TTCTTTTTTTTTTTTTC
1 TTCTTTTTTTTTCTTTC
73261765 CATTGTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (18 bp):
TTCTTTTTTTTTCTTTCT
Found at i:73268357 original size:11 final size:11
Alignment explanation
Indices: 73268341--73268365 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
73268331 AATTTGTGAA
73268341 AAAAATAAAAT
1 AAAAATAAAAT
73268352 AAAAATAAAAT
1 AAAAATAAAAT
73268363 AAA
1 AAA
73268366 GAACACACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:73271413 original size:3 final size:3
Alignment explanation
Indices: 73271405--73271438 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
73271395 TGTGTGATGA
73271405 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
73271439 AATATATATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:73275350 original size:16 final size:16
Alignment explanation
Indices: 73275329--73275359 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73275319 TATCAGTTAT
*
73275329 AGATACAGATTACAAC
1 AGATACAGAATACAAC
73275345 AGATACAGAATACAA
1 AGATACAGAATACAA
73275360 ATTTCTTACC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.16, G:0.13, T:0.16
Consensus pattern (16 bp):
AGATACAGAATACAAC
Found at i:73278322 original size:10 final size:10
Alignment explanation
Indices: 73278307--73278332 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
73278297 ATCGTACAAC
73278307 AACTAAGCAG
1 AACTAAGCAG
73278317 AACTAAGCAG
1 AACTAAGCAG
73278327 AACTAA
1 AACTAA
73278333 CTCGCTAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.19, G:0.15, T:0.12
Consensus pattern (10 bp):
AACTAAGCAG
Found at i:73280135 original size:47 final size:48
Alignment explanation
Indices: 73280020--73280151 Score: 142
Period size: 47 Copynumber: 2.8 Consensus size: 48
73280010 CACATTATGA
* * * * *
73280020 GAGCCAGTGTAAGACCATATCTGGGATATTACGTCGGCCTCGATTTCGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGACATC-GACTCGA-TTCGAT
* * *
73280070 -AGTCAGTGTAAGACCATGTCTGGGACATGACATCGACTTGA-TGGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGACATCGACTCGATTCGAT
* *
73280116 GAGCCAGTGTAAGACCATGTCTGGGACGTGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGACATCG
73280152 GCATTACACC
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
46 4 0.06
47 32 0.46
48 5 0.07
49 29 0.41
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGACATCGACTCGATTCGAT
Found at i:73289486 original size:16 final size:17
Alignment explanation
Indices: 73289465--73289502 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
73289455 CACCTCAACA
*
73289465 AAAAAT-TTAAAATTAT
1 AAAAATATTAAAATAAT
*
73289481 AAAAATATTCAAATAAT
1 AAAAATATTAAAATAAT
73289498 AAAAA
1 AAAAA
73289503 AATAAAAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAATATTAAAATAAT
Found at i:73289681 original size:16 final size:18
Alignment explanation
Indices: 73289646--73289683 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
73289636 ATCCTTATTT
*
73289646 AAATAAAATACAGTAGTA
1 AAATAAAATACAGAAGTA
73289664 AAATAAAATA-A-AAGTA
1 AAATAAAATACAGAAGTA
73289680 AAAT
1 AAAT
73289684 CCATATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 1 0.05
18 10 0.53
ACGTcount: A:0.68, C:0.03, G:0.08, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAGAAGTA
Found at i:73298109 original size:19 final size:21
Alignment explanation
Indices: 73298082--73298125 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
73298072 TAATAATTTT
*
73298082 AATAGTTTT-AATTTCTA-AA
1 AATAGTTTTAAAATTCTACAA
*
73298101 AATATTTTTAAAATTCTACAA
1 AATAGTTTTAAAATTCTACAA
73298122 AATA
1 AATA
73298126 ATTAATTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 8 0.38
20 7 0.33
21 6 0.29
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (21 bp):
AATAGTTTTAAAATTCTACAA
Found at i:73299022 original size:16 final size:16
Alignment explanation
Indices: 73298965--73299024 Score: 50
Period size: 16 Copynumber: 3.8 Consensus size: 16
73298955 CATTTTGCCC
*
73298965 GTGTTTTTTAGGGTTA
1 GTGTTTTTTAAGGTTA
* *
73298981 GGGTTTTTTAGGGTTTA
1 GTGTTTTTTAAGG-TTA
* **
73298998 AT-TGATTTAAGGTTA
1 GTGTTTTTTAAGGTTA
73299013 GTGTTTTTTAAG
1 GTGTTTTTTAAG
73299025 ATTTAGGGTT
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
15 4 0.12
16 26 0.79
17 3 0.09
ACGTcount: A:0.18, C:0.00, G:0.28, T:0.53
Consensus pattern (16 bp):
GTGTTTTTTAAGGTTA
Found at i:73299034 original size:23 final size:23
Alignment explanation
Indices: 73299001--73299053 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
73298991 GGGTTTAATT
* * *
73299001 GATTTAAGGTTAGTGTTTTTTAA
1 GATTTAGGGTTAGGGGTTTTTAA
73299024 GATTTAGGGTTAGGGGTTTTTAA
1 GATTTAGGGTTAGGGGTTTTTAA
*
73299047 GGTTTAG
1 GATTTAG
73299054 AATTTAAGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (23 bp):
GATTTAGGGTTAGGGGTTTTTAA
Found at i:73299168 original size:19 final size:19
Alignment explanation
Indices: 73299144--73299233 Score: 105
Period size: 19 Copynumber: 4.8 Consensus size: 19
73299134 AGTTTAGGGT
*
73299144 ATTAAGGTTAATTGATTAA
1 ATTAGGGTTAATTGATTAA
*
73299163 ATTAAGG---ATTGATTAA
1 ATTAGGGTTAATTGATTAA
73299179 ATTAGGGTTAATTGATTAA
1 ATTAGGGTTAATTGATTAA
*
73299198 ATTTAGGGTTAGTTGATTAA
1 A-TTAGGGTTAATTGATTAA
* *
73299218 TTTGGGGTTAATTGAT
1 ATTAGGGTTAATTGAT
73299234 ACATTATCGC
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
16 15 0.24
19 30 0.48
20 17 0.27
ACGTcount: A:0.34, C:0.00, G:0.22, T:0.43
Consensus pattern (19 bp):
ATTAGGGTTAATTGATTAA
Found at i:73299190 original size:35 final size:38
Alignment explanation
Indices: 73299144--73299233 Score: 114
Period size: 39 Copynumber: 2.4 Consensus size: 38
73299134 AGTTTAGGGT
*
73299144 ATTAAGGTTAATTGATTAAA-TTAAGG-A-TTGATTAA
1 ATTAGGGTTAATTGATTAAATTTAAGGTAGTTGATTAA
*
73299179 ATTAGGGTTAATTGATTAAATTTAGGGTTAGTTGATTAA
1 ATTAGGGTTAATTGATTAAATTTAAGG-TAGTTGATTAA
* *
73299218 TTTGGGGTTAATTGAT
1 ATTAGGGTTAATTGAT
73299234 ACATTATCGC
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
35 19 0.40
36 5 0.11
38 1 0.02
39 22 0.47
ACGTcount: A:0.34, C:0.00, G:0.22, T:0.43
Consensus pattern (38 bp):
ATTAGGGTTAATTGATTAAATTTAAGGTAGTTGATTAA
Found at i:73300029 original size:127 final size:126
Alignment explanation
Indices: 73299760--73300141 Score: 593
Period size: 126 Copynumber: 3.0 Consensus size: 126
73299750 TTTCTACAAG
* *
73299760 AATAATTTTGAGTAGACATTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
1 AATAATTCTGAGTAGACATTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTA
* * *
73299825 AGCAAAATTTCTAAAAAAAGCTCCCACGTTGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCATAGAAA
* * * * *
73299886 AATAATTCTGAATAGACGTTTCTGGACAAATAGTATCGAAAACGCTTCAAGCAGGATGCACTGTT
1 AATAATTCTGAGTAGACATTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTA
* *
73299951 AGCAAAATTTTTTGAAAAAAGCTCCCACATGGACGCTCTTTTGCTACAGTAGTTCATAGAAA
66 AGCAAAA-TTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCATAGAAA
* * *
73300013 AATAATTCTGAGTAGACATTTCTGAATAAATAGTGTCGAAAACGCTTCAAGCAGAATGCATTGTA
1 AATAATTCTGAGTAGACATTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTA
* **
73300078 AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACACTCTTTTATTACAGTAGTTCATAGAAA
66 AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCATAGAAA
73300139 AAT
1 AAT
73300142 GAGGCTATAA
Statistics
Matches: 231, Mismatches: 24, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
126 118 0.51
127 113 0.49
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (126 bp):
AATAATTCTGAGTAGACATTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTA
AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCATAGAAA
Found at i:73304280 original size:7 final size:7
Alignment explanation
Indices: 73304270--73304294 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
73304260 CATAATACAT
73304270 AATACTA
1 AATACTA
73304277 AATACTA
1 AATACTA
73304284 AATACTA
1 AATACTA
73304291 AATA
1 AATA
73304295 TGAAACGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:73305336 original size:48 final size:46
Alignment explanation
Indices: 73305284--73305418 Score: 146
Period size: 48 Copynumber: 2.8 Consensus size: 46
73305274 ATGCAAACAT
* *
73305284 CATAAATGAAAAAAAAATCAAGCAGTATTGAAATATTAACTATAA-TTG
1 CATAAATGAAAAAAATATCAA-TAGTATTGAAAT-TTAACTA-AATTTG
* *
73305332 CATAAATGAATAAAATATCAAATAGTATTGCAAATTTAATTAAATTTG
1 CATAAATGAAAAAAATATC-AATAGTATTG-AAATTTAACTAAATTTG
**
73305380 CATAAATTTAAAAAATATCGAATAGTATTGAAAATTTAA
1 CATAAATGAAAAAAATATC-AATAGTATTG-AAATTTAA
73305419 AATTATCACT
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
47 2 0.03
48 67 0.89
49 6 0.08
ACGTcount: A:0.53, C:0.07, G:0.09, T:0.32
Consensus pattern (46 bp):
CATAAATGAAAAAAATATCAATAGTATTGAAATTTAACTAAATTTG
Found at i:73313726 original size:3 final size:3
Alignment explanation
Indices: 73313718--73313767 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
73313708 ACATATGGAG
* * *
73313718 TAA TAA TAA TAA TAA TAA CAA TAA TAA TGA TAA TAA TAT TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
73313766 TA
1 TA
73313768 GTCATCGTTC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:73316667 original size:36 final size:36
Alignment explanation
Indices: 73316606--73316677 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 36
73316596 TATGATTGTA
*
73316606 GATGTTCAAATGCACACTCCAGATTTATGGAATGTT
1 GATGTTCAAATGCAAACTCCAGATTTATGGAATGTT
* * * *
73316642 GATGTTCAAATTCAAACTGCGGATTTATTGAATGTT
1 GATGTTCAAATGCAAACTCCAGATTTATGGAATGTT
73316678 ATAATAGCAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (36 bp):
GATGTTCAAATGCAAACTCCAGATTTATGGAATGTT
Found at i:73317366 original size:79 final size:79
Alignment explanation
Indices: 73317195--73317352 Score: 246
Period size: 78 Copynumber: 2.0 Consensus size: 79
73317185 TAGATTCTAG
* * * * *
73317195 AGTTAAAATTGATATTGTATTTATATCATATCTCTATATCATAATCAAGTTTAATATAAAATATA
1 AGTTAAAATTGATATCGTATTTAAATCACATATCTATATCATAATCAAGTTTAACATAAAATATA
73317260 TTCATGTTTTTATT
66 TTCATGTTTTTATT
* *
73317274 AGTTAAAATTGATATCGTATTTAAATTACATATC-ATATCATAATCAAGTTTAACATATAATATA
1 AGTTAAAATTGATATCGTATTTAAATCACATATCTATATCATAATCAAGTTTAACATAAAATATA
73317338 TTCATGTTTTTATT
66 TTCATGTTTTTATT
73317352 A
1 A
73317353 TATAAATTTT
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
78 43 0.60
79 29 0.40
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.46
Consensus pattern (79 bp):
AGTTAAAATTGATATCGTATTTAAATCACATATCTATATCATAATCAAGTTTAACATAAAATATA
TTCATGTTTTTATT
Found at i:73338790 original size:5 final size:5
Alignment explanation
Indices: 73338775--73338861 Score: 56
Period size: 5 Copynumber: 17.2 Consensus size: 5
73338765 ACGCTTTCTC
* * * *
73338775 ATATAT ATATT ATATT ATATT A-ATAT ATATT TTATT -CATT ATATC ATTTT
1 ATAT-T ATATT ATATT ATATT ATAT-T ATATT ATATT ATATT ATATT ATATT
*
73338825 CAT-TAT ATATT ATATT ATATT ATAATT TTATT -TATT A
1 -ATAT-T ATATT ATATT ATATT AT-ATT ATATT ATATT A
73338862 CTTTGTACAA
Statistics
Matches: 66, Mismatches: 7, Indels: 17
0.73 0.08 0.19
Matches are distributed among these distances:
4 9 0.14
5 43 0.65
6 14 0.21
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (5 bp):
ATATT
Found at i:73341006 original size:96 final size:96
Alignment explanation
Indices: 73340842--73341031 Score: 362
Period size: 96 Copynumber: 2.0 Consensus size: 96
73340832 TCAAGATGGC
* *
73340842 TAAGTATCTGTTTCGAGCTATGGTATAGTTTTGGAACCCTGCTTATAGTTGTTTTACATTTGGAG
1 TAAGTATCTATTTCGAGCTATGGTATAGTTTTGGAACCCCGCTTATAGTTGTTTTACATTTGGAG
73340907 AGGTAGACTTAGTACCTACTTTGGAGGAGGA
66 AGGTAGACTTAGTACCTACTTTGGAGGAGGA
73340938 TAAGTATCTATTTCGAGCTATGGTATAGTTTTGGAACCCCGCTTATAGTTGTTTTACATTTGGAG
1 TAAGTATCTATTTCGAGCTATGGTATAGTTTTGGAACCCCGCTTATAGTTGTTTTACATTTGGAG
73341003 AGGTAGACTTAGTACCTACTTTGGAGGAG
66 AGGTAGACTTAGTACCTACTTTGGAGGAG
73341032 TATACGACCT
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 92 1.00
ACGTcount: A:0.24, C:0.13, G:0.25, T:0.37
Consensus pattern (96 bp):
TAAGTATCTATTTCGAGCTATGGTATAGTTTTGGAACCCCGCTTATAGTTGTTTTACATTTGGAG
AGGTAGACTTAGTACCTACTTTGGAGGAGGA
Found at i:73350989 original size:44 final size:44
Alignment explanation
Indices: 73350939--73351082 Score: 225
Period size: 44 Copynumber: 3.3 Consensus size: 44
73350929 TCACCGATAG
* * *
73350939 CAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCAAAGATGG
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
*
73350983 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
* * *
73351027 CAGATTTGGTGTCTCTCTATTGATAGAGAGCAGATCGAAGATGA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
73351071 CAGATTTGGCGT
1 CAGATTTGGCGT
73351083 GAGCAGATCA
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (44 bp):
CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
Found at i:73351087 original size:29 final size:29
Alignment explanation
Indices: 73351054--73351111 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
73351044 TATTGATAGA
*
73351054 GAGCAGATCGAAGATGACAGATTTGGCGT
1 GAGCAGATCAAAGATGACAGATTTGGCGT
73351083 GAGCAGATCAAAGATGACAGATTTGGCGT
1 GAGCAGATCAAAGATGACAGATTTGGCGT
73351112 CTCTGTATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.21
Consensus pattern (29 bp):
GAGCAGATCAAAGATGACAGATTTGGCGT
Found at i:73351103 original size:73 final size:73
Alignment explanation
Indices: 73351010--73351153 Score: 234
Period size: 73 Copynumber: 2.0 Consensus size: 73
73351000 TATTGACAGA
* * *
73351010 GAGCAGATCGAAGATAACAGATTTGGTGTCTCTCTATTGATAGAGAGCAGATCGAAGATGACAGA
1 GAGCAGATCAAAGATAACAGATTTGGCGTCTCTCTATTGACAGAGAGCAGATCGAAGATGACAGA
73351075 TTTGGCGT
66 TTTGGCGT
* * *
73351083 GAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTGACAGAGAGTAGATCGAAGATGACAGA
1 GAGCAGATCAAAGATAACAGATTTGGCGTCTCTCTATTGACAGAGAGCAGATCGAAGATGACAGA
73351148 TTTGGC
66 TTTGGC
73351154 ATCTCTGTAT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
73 65 1.00
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.25
Consensus pattern (73 bp):
GAGCAGATCAAAGATAACAGATTTGGCGTCTCTCTATTGACAGAGAGCAGATCGAAGATGACAGA
TTTGGCGT
Found at i:73351172 original size:117 final size:116
Alignment explanation
Indices: 73350966--73351331 Score: 444
Period size: 117 Copynumber: 3.0 Consensus size: 116
73350956 TATTGACAGA
*
73350966 GAGCAGATCAAAGATGGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGA
1 GAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGAT-ACAGA
* * *
73351031 TTTGGTGTCTCTCTATTGATAGAGAGCAGATCGAAGATGACAGATTTGGCGT
65 TTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGACAGATTTGGCGT
*
73351083 GAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTGACAGAGAGTAGATCGAAGATGACAGA
1 GAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGAT-ACAGA
* * *
73351148 TTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAAATAACAGATTTGGCGTCTCT
65 TTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGACAGATTTGGCG----T
* * * * *
73351204 GTATTGACAGAGAGCAGATCGAAGATAACAGATTTGGCATATCTGTACTGACAGAGAGCAGATCG
1 G-A--G-C--AGATC--A---AAGATGACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCG
*
73351269 AAGATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGATAGATTTGGCGT
55 AAGATA-CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGACAGATTTGGCGT
73351332 TTTTGTATTG
Statistics
Matches: 214, Mismatches: 19, Indels: 21
0.84 0.07 0.08
Matches are distributed among these distances:
117 107 0.50
121 2 0.01
122 1 0.00
124 1 0.00
125 1 0.00
127 4 0.02
128 1 0.00
129 1 0.00
131 1 0.00
132 95 0.44
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (116 bp):
GAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATACAGAT
TTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGACAGATTTGGCGT
Found at i:73351406 original size:44 final size:44
Alignment explanation
Indices: 73351083--73351412 Score: 468
Period size: 44 Copynumber: 7.5 Consensus size: 44
73351073 GATTTGGCGT
*
73351083 GAGCAGATCAAAGAT-GACAGATTTGGCGTCTCTGTATTGACAGA
1 GAGCAGATCGAAGATAG-CAGATTTGGCGTCTCTGTATTGACAGA
* *
73351127 GAGTAGATCGAAGAT-GACAGATTTGGCATCTCTGTATTGACAGA
1 GAGCAGATCGAAGATAG-CAGATTTGGCGTCTCTGTATTGACAGA
* *
73351171 GAGCAGATCGAAAATAACAGATTTGGCGTCTCTGTATTGACAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGACAGA
* * * *
73351215 GAGCAGATCGAAGATAACAGATTTGGCATATCTGTACTGACAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGACAGA
73351259 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGACAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGACAGA
* * * *
73351303 GAGCAGATCGAAGAT-GATAGATTTGGCGTTTTTGTATTGTCAGA
1 GAGCAGATCGAAGATAG-CAGATTTGGCGTCTCTGTATTGACAGA
* *
73351347 GAGAAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGACAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGACAGA
*
73351391 GAACAGATCGAAGATAGCAGAT
1 GAGCAGATCGAAGATAGCAGAT
73351413 CTGACATTTG
Statistics
Matches: 256, Mismatches: 27, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
43 1 0.00
44 254 0.99
45 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.25
Consensus pattern (44 bp):
GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGACAGA
Found at i:73353133 original size:29 final size:29
Alignment explanation
Indices: 73353094--73353168 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
73353084 CGCTTTATCA
73353094 TATATATATTATATTATTTT-AACATATAT
1 TATAT-TATTATATTATTTTCAACATATAT
* * **
73353123 TTTATTCATTATATCATTTTCATTATATAT
1 TATATT-ATTATATTATTTTCAACATATAT
73353153 TATATTATTATATTAT
1 TATATTATTATATTAT
73353169 ATTATTATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
28 1 0.03
29 25 0.66
30 12 0.32
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (29 bp):
TATATTATTATATTATTTTCAACATATAT
Found at i:73353166 original size:13 final size:13
Alignment explanation
Indices: 73353144--73353187 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
73353134 TATCATTTTC
73353144 ATTA-TATATTAT
1 ATTATTATATTAT
73353156 ATTATTATATTAT
1 ATTATTATATTAT
*
73353169 ATTATTATTTTA-
1 ATTATTATATTAT
73353181 ATTATTA
1 ATTATTA
73353188 CTATGGACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
12 11 0.37
13 19 0.63
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
ATTATTATATTAT
Found at i:73355767 original size:22 final size:21
Alignment explanation
Indices: 73355737--73355783 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
73355727 TACAAATTAA
73355737 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
73355759 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
73355780 ATCT
1 ATCT
73355784 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:73355789 original size:19 final size:19
Alignment explanation
Indices: 73355754--73355832 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
73355744 AGATTACAAG
73355754 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
73355775 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
73355792 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
73355811 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
73355830 ATC
1 ATC
73355833 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:73355809 original size:36 final size:38
Alignment explanation
Indices: 73355754--73355826 Score: 132
Period size: 36 Copynumber: 2.0 Consensus size: 38
73355744 AGATTACAAG
73355754 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
73355792 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
73355827 CATATCCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 26 0.74
37 1 0.03
38 8 0.23
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:73355841 original size:36 final size:35
Alignment explanation
Indices: 73355755--73355842 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 35
73355745 GATTACAAGA
73355755 TCATATCTTCAAGATTGCATATCATATCTAAGATTG
1 TCATATCTT-AAGATTGCATATCATATCTAAGATTG
73355791 TATCATATC-TAAGATTGCATATCATATCTAAGATTG
1 --TCATATCTTAAGATTGCATATCATATCTAAGATTG
73355827 -CATATCCTTAAAGATT
1 TCATAT-CTT-AAGATT
73355843 ATATTTCCAT
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
33 5 0.11
34 1 0.02
35 1 0.02
36 32 0.68
37 1 0.02
38 7 0.15
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (35 bp):
TCATATCTTAAGATTGCATATCATATCTAAGATTG
Found at i:73356718 original size:84 final size:84
Alignment explanation
Indices: 73356572--73357099 Score: 766
Period size: 84 Copynumber: 6.3 Consensus size: 84
73356562 ATCATCTTGG
* * * *
73356572 ACCCTACTGCTTAGGGGGTTAAGGTGCATTGTCTTCAATCTGCT-CGCTACTGCTTA-GG-GATA
1 ACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
*
73356634 AGATCTGTAAATTTAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
* * * *
73356656 ACCCTACTTCTTAGGGGATTAAGGCGGGTCTTCGATATGCTCCACTACTACTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
73356721 TCTACAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
*
73356740 ACCCTACTGCTTAGGGGATTAAGGCGAGTCATCGTCGATCTGCTCCGCTACTGCTTAGGGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATA
* *
73356805 AGATCTGC-----GAACCTATT
63 AGATCTGCAAATTTAACCTGTT
* *
73356822 ACCGTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
73356887 TATGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
*
73356906 ACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
* *
73356971 TATACAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
*
73356990 ACCCTACTGCTTAGGGGATTAAGACGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
73357055 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
73357074 ACCCTACTGCTTAGGGGATTAAGGCG
1 ACCCTACTGCTTAGGGGATTAAGGCG
73357100 CTGAATGTTG
Statistics
Matches: 400, Mismatches: 33, Indels: 22
0.88 0.07 0.05
Matches are distributed among these distances:
79 36 0.09
81 13 0.03
82 46 0.12
83 2 0.00
84 267 0.67
85 1 0.00
87 35 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (84 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGCAAATTTAACCTGTT
Found at i:73357000 original size:43 final size:42
Alignment explanation
Indices: 73356866--73357089 Score: 162
Period size: 43 Copynumber: 5.3 Consensus size: 42
73356856 ATCTACTCCA
73356866 CTACTGCTTAGGGAGATAAGATATGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGAGATAAGATAT-CAAATTTAACCTGTTACC
* ** ** * *
73356909 CTACCGCTTAGGG-GATTAAGGCGAGTC---TTCGATCTGCT-CC
1 CTACTGCTTAGGGAGA-TAA-GATA-TCAAATTTAACCTGTTACC
73356949 ACTACTGCTTAGGGAGATAAGATATACAAATTTAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATAT-CAAATTTAACCTGTTACC
* ** * *
73356993 CTACTGCTTAGGG-GATTAAGACGAGTC---TTCGATCTGCT-CC
1 CTACTGCTTAGGGAGA-TAAGA-TA-TCAAATTTAACCTGTTACC
*
73357033 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATAT-CAAATTTAACCTGTTACC
73357077 CTACTGCTTAGGG
1 CTACTGCTTAGGG
73357090 GATTAAGGCG
Statistics
Matches: 136, Mismatches: 25, Indels: 40
0.68 0.12 0.20
Matches are distributed among these distances:
39 2 0.01
40 8 0.06
41 47 0.35
42 8 0.06
43 60 0.44
44 9 0.07
45 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (42 bp):
CTACTGCTTAGGGAGATAAGATATCAAATTTAACCTGTTACC
Found at i:73358059 original size:7 final size:7
Alignment explanation
Indices: 73358047--73358111 Score: 61
Period size: 7 Copynumber: 9.9 Consensus size: 7
73358037 GGCCTCTCCA
73358047 TTTTTCT
1 TTTTTCT
73358054 TTTTTC-
1 TTTTTCT
73358060 -TTTT-T
1 TTTTTCT
*
73358065 TTTCTCT
1 TTTTTCT
73358072 TTTTTCT
1 TTTTTCT
73358079 TTTTAT-T
1 TTTT-TCT
73358086 TTTTTCT
1 TTTTTCT
73358093 CTTTTTC-
1 -TTTTTCT
73358100 -TTTTCT
1 TTTTTCT
73358106 TTTTTC
1 TTTTTC
73358112 CCTTTTTTTT
Statistics
Matches: 48, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
5 9 0.19
6 4 0.08
7 28 0.58
8 7 0.15
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTCT
Found at i:73358067 original size:9 final size:9
Alignment explanation
Indices: 73358053--73358121 Score: 61
Period size: 9 Copynumber: 7.7 Consensus size: 9
73358043 TCCATTTTTC
73358053 TTTTTTCTT
1 TTTTTTCTT
*
73358062 TTTTTTCTC
1 TTTTTTCTT
73358071 TTTTTTCTT
1 TTTTTTCTT
73358080 TTTATTT-TT
1 TTT-TTTCTT
*
73358089 TTCTCTT-TT
1 TT-TTTTCTT
*
73358098 TCTTTTCTT
1 TTTTTTCTT
**
73358107 TTTTCCCTT
1 TTTTTTCTT
73358116 TTTTTT
1 TTTTTT
73358122 GAAATAGAAG
Statistics
Matches: 47, Mismatches: 10, Indels: 6
0.75 0.16 0.10
Matches are distributed among these distances:
8 3 0.06
9 40 0.85
10 4 0.09
ACGTcount: A:0.01, C:0.16, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:73358109 original size:22 final size:23
Alignment explanation
Indices: 73358055--73358110 Score: 89
Period size: 22 Copynumber: 2.5 Consensus size: 23
73358045 CATTTTTCTT
73358055 TTTTCTTTTTTTTCTCTTTTTTC
1 TTTTCTTTTTTTTCTCTTTTTTC
73358078 TTTT-TATTTTTTTCTC-TTTTTC
1 TTTTCT-TTTTTTTCTCTTTTTTC
73358100 TTTTCTTTTTT
1 TTTTCTTTTTT
73358111 CCCTTTTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
22 16 0.52
23 15 0.48
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (23 bp):
TTTTCTTTTTTTTCTCTTTTTTC
Found at i:73358120 original size:23 final size:23
Alignment explanation
Indices: 73358047--73358121 Score: 75
Period size: 22 Copynumber: 3.3 Consensus size: 23
73358037 GGCCTCTCCA
*
73358047 TTTTTCTT-TTTTCTTTTTTTTC
1 TTTTTTTTCTTTTCTTTTTTTTC
*
73358069 TCTTTTTTCTTTT-TATTTTTTTC
1 TTTTTTTTCTTTTCT-TTTTTTTC
* **
73358092 -TCTTTTTCTTTTCTTTTTTCCC
1 TTTTTTTTCTTTTCTTTTTTTTC
73358114 TTTTTTTT
1 TTTTTTTT
73358122 GAAATAGAAG
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
22 23 0.55
23 19 0.45
ACGTcount: A:0.01, C:0.16, G:0.00, T:0.83
Consensus pattern (23 bp):
TTTTTTTTCTTTTCTTTTTTTTC
Found at i:73363732 original size:22 final size:21
Alignment explanation
Indices: 73363702--73363767 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
73363692 TACAAATTAA
73363702 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
73363724 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
73363745 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
73363764 ATCT
1 ATCT
73363768 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:73363754 original size:19 final size:19
Alignment explanation
Indices: 73363719--73363797 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
73363709 AGATTACAAG
73363719 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
73363740 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
73363759 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
73363776 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
73363795 ATC
1 ATC
73363798 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:73363761 original size:14 final size:15
Alignment explanation
Indices: 73363741--73363797 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
73363731 AGATTGCATA
73363741 TCATATCTAAGATTG
1 TCATATCTAAGATTG
73363756 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
73363775 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
73363792 -CATATC
1 TCATATC
73363798 CTTAAAGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
17 17 0.45
19 15 0.39
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:73363783 original size:36 final size:39
Alignment explanation
Indices: 73363719--73363797 Score: 128
Period size: 36 Copynumber: 2.1 Consensus size: 39
73363709 AGATTACAAG
73363719 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTG-ATATCATATCTAAGATTGCAT
73363759 ATCATATC-T-AAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
73363795 ATC
1 ATC
73363798 CTTAAAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
39 1 0.03
40 8 0.21
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (39 bp):
ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
Found at i:73369398 original size:86 final size:85
Alignment explanation
Indices: 73369295--73369460 Score: 215
Period size: 85 Copynumber: 1.9 Consensus size: 85
73369285 CAAAATTTCG
* * * * * ** *
73369295 CAAACGCCACTATAGAACATGACCTTTAGCGGCGTTTCTCACAAAAATGCCGCTATGGAACATGA
1 CAAACACCACTATAGAACATGAACTTTAGCGGCGCTT-TAACAAAAACGCCGCTAAAGAACAAGA
*
73369360 CCTTTAGTGGCACTTTTACCA
65 CCTTTAGCGGCACTTTTACCA
* *
73369381 CAAACACCGCTATAGAACATGAACTTTAGCGGCGCTTTAAGAAAAACGCCGCTAAAGAACAAGAC
1 CAAACACCACTATAGAACATGAACTTTAGCGGCGCTTTAACAAAAACGCCGCTAAAGAACAAGAC
*
73369446 TTTTAGCGGCACTTT
66 CTTTAGCGGCACTTT
73369461 AAGAAAAATG
Statistics
Matches: 68, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
85 35 0.51
86 33 0.49
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (85 bp):
CAAACACCACTATAGAACATGAACTTTAGCGGCGCTTTAACAAAAACGCCGCTAAAGAACAAGAC
CTTTAGCGGCACTTTTACCA
Found at i:73369451 original size:42 final size:42
Alignment explanation
Indices: 73369296--73369522 Score: 193
Period size: 42 Copynumber: 5.3 Consensus size: 42
73369286 AAAATTTCGC
* * * * *
73369296 AAACGCCACTATAGAACATGACCTTTAGCGGCGTTTCTCACAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTT-TAAGAA
* ** * * ** *
73369339 AAATGCCGCTATGGAACATGACCTTTAGTGGCACTTTTACCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGC-TTTAAGAA
* * *
73369382 AAACACCGCTATAGAACATGAACTTTAGCGGCGCTTTAAGAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTAAGAA
* * *
73369424 AAACGCCGCTAAAGAACAAGACTTTTAGCGGCACTTTAAGAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTAAGAA
* * * * * * *
73369466 AAATGCTGCTAAAGAATAAGACTTTTAGCGACGCTTTAGTGAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTA-AGAA
73369509 AAACGCCGCTAAAG
1 AAACGCCGCTAAAG
73369523 GTCACATTTT
Statistics
Matches: 150, Mismatches: 32, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
42 74 0.49
43 74 0.49
44 2 0.01
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (42 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTAAGAA
Found at i:73369687 original size:19 final size:19
Alignment explanation
Indices: 73369665--73369715 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
73369655 CAACCAAAAA
* *
73369665 CAGCAAATACAAAGTCATC
1 CAGCAAATACAAAGCCAAC
73369684 CAGCAAATACAAAGCCAAC
1 CAGCAAATACAAAGCCAAC
73369703 CAG-AAATAGCAAA
1 CAGCAAATA-CAAA
73369716 TATAAATGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 5 0.17
19 24 0.83
ACGTcount: A:0.53, C:0.25, G:0.12, T:0.10
Consensus pattern (19 bp):
CAGCAAATACAAAGCCAAC
Found at i:73377688 original size:61 final size:60
Alignment explanation
Indices: 73377578--73377752 Score: 221
Period size: 61 Copynumber: 2.9 Consensus size: 60
73377568 CCAACTGTGT
* * * *
73377578 TGATATGGGCAAGGCCCAATATA-TCTCGACTTGTAATAGGGCTACGGCCCAGATTAATAC
1 TGATATGGGCTAGGCCCAGTATACTCT-GATTTGTAATAGGGCTATGGCCCAGATTAATAC
73377638 TGATATGGGCTAGGCCCAGTATACTCTGATATTGTAATAGGGCTATGGCCCAGATTAATAC
1 TGATATGGGCTAGGCCCAGTATACTCTGAT-TTGTAATAGGGCTATGGCCCAGATTAATAC
* *
73377699 TGATATGGGCTAAGGCCCAGT-TAACACTGATTTCTGAATAGGGCT-TAGGCCCAG
1 TGATATGGGCT-AGGCCCAGTAT-ACTCTGATTTGT-AATAGGGCTAT-GGCCCAG
73377753 TAAAGCTTGA
Statistics
Matches: 103, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
60 23 0.22
61 48 0.47
62 32 0.31
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (60 bp):
TGATATGGGCTAGGCCCAGTATACTCTGATTTGTAATAGGGCTATGGCCCAGATTAATAC
Found at i:73377717 original size:28 final size:28
Alignment explanation
Indices: 73377616--73377729 Score: 99
Period size: 28 Copynumber: 3.9 Consensus size: 28
73377606 ACTTGTAATA
*
73377616 GGGCTACGGCCCAGATTAATACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
* *
73377644 GGGCT-AGGCCCAGTATACTCTGATATTG-TAAT
1 GGGCTAAGGCCCAG---A-T-TAATACTGAT-AT
*
73377676 AGGGCTATGGCCCAGATTAATACTGATAT
1 -GGGCTAAGGCCCAGATTAATACTGATAT
*
73377705 GGGCTAAGGCCCAG-TTAACACTGAT
1 GGGCTAAGGCCCAGATTAATACTGAT
73377730 TTCTGAATAG
Statistics
Matches: 69, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
27 17 0.25
28 18 0.26
29 8 0.12
30 3 0.04
31 3 0.04
32 8 0.12
33 5 0.07
34 7 0.10
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATACTGATAT
Found at i:73382098 original size:27 final size:27
Alignment explanation
Indices: 73382068--73382216 Score: 160
Period size: 27 Copynumber: 5.5 Consensus size: 27
73382058 TGGTAATAAA
* * *
73382068 TTATGTAAGTTATG-ATATGATATATAT
1 TTATGTAAGTTATGTAAATGATGTA-AG
*
73382095 TTATGTAAGTTATGTAAATTG-CGTAAG
1 TTATGTAAGTTATGTAAA-TGATGTAAG
* * *
73382122 TTATGTAAGTTATG-ATATGATGTTTAT
1 TTATGTAAGTTATGTAAATGATG-TAAG
*
73382149 TTATGTAAGTTATGTAAATTATGTAAG
1 TTATGTAAGTTATGTAAATGATGTAAG
* *
73382176 TTATGTAAGTTATGTAAATTATGTGAG
1 TTATGTAAGTTATGTAAATGATGTAAG
73382203 TTATGTAAGTTATG
1 TTATGTAAGTTATG
73382217 ATTAGCATCT
Statistics
Matches: 104, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.02
26 3 0.03
27 87 0.84
28 10 0.10
29 2 0.02
ACGTcount: A:0.34, C:0.01, G:0.19, T:0.46
Consensus pattern (27 bp):
TTATGTAAGTTATGTAAATGATGTAAG
Found at i:73382107 original size:9 final size:9
Alignment explanation
Indices: 73382095--73382216 Score: 131
Period size: 9 Copynumber: 13.6 Consensus size: 9
73382085 TGATATATAT
73382095 TTATGTAAG
1 TTATGTAAG
*
73382104 TTATGTAAA
1 TTATGTAAG
**
73382113 TTGCGTAAG
1 TTATGTAAG
73382122 TTATGTAAG
1 TTATGTAAG
73382131 TTATG-ATA-
1 TTATGTA-AG
* * *
73382139 TGATGTTTAT
1 TTATG-TAAG
73382149 TTATGTAAG
1 TTATGTAAG
*
73382158 TTATGTAAA
1 TTATGTAAG
73382167 TTATGTAAG
1 TTATGTAAG
73382176 TTATGTAAG
1 TTATGTAAG
*
73382185 TTATGTAAA
1 TTATGTAAG
*
73382194 TTATGTGAG
1 TTATGTAAG
73382203 TTATGTAAG
1 TTATGTAAG
73382212 TTATG
1 TTATG
73382217 ATTAGCATCT
Statistics
Matches: 92, Mismatches: 17, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
8 5 0.05
9 83 0.90
10 4 0.04
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Done.