Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 222 of 344
Found at i:73757688 original size:7 final size:7
Alignment explanation
Indices: 73757678--73757704 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
73757668 AATAATAACC
73757678 GATAAAT
1 GATAAAT
73757685 GATAAAT
1 GATAAAT
73757692 GATAAAT
1 GATAAAT
73757699 GATAAA
1 GATAAA
73757705 AATGTTACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.26
Consensus pattern (7 bp):
GATAAAT
Found at i:73759505 original size:22 final size:21
Alignment explanation
Indices: 73759458--73759507 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
73759448 CGGCCTGCAG
*
73759458 CACGGGCGTGTCTTAGGATCA
1 CACGGGCGTGTCTTAGGACCA
73759479 CACGGGCGTGTCCCTT-GGACCA
1 CACGGGCGTGT--CTTAGGACCA
73759501 CACGGGC
1 CACGGGC
73759508 ATGTGAGCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 11 0.42
22 12 0.46
23 3 0.12
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (21 bp):
CACGGGCGTGTCTTAGGACCA
Found at i:73761819 original size:21 final size:22
Alignment explanation
Indices: 73761793--73761833 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
73761783 ATGGAAGAAT
73761793 GAATGAATAT-AGAAAATGAGA
1 GAATGAATATAAGAAAATGAGA
* *
73761814 GAATGAGTATAAGAGAATGA
1 GAATGAATATAAGAAAATGA
73761834 AGCCTTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.54, C:0.00, G:0.27, T:0.20
Consensus pattern (22 bp):
GAATGAATATAAGAAAATGAGA
Found at i:73763755 original size:48 final size:48
Alignment explanation
Indices: 73763674--73763798 Score: 178
Period size: 48 Copynumber: 2.6 Consensus size: 48
73763664 GCAACATGGA
* * * * *
73763674 CCCATACATTGTCTTATACTAGCACACATATCATCGCCGATGCCATTT
1 CCCAAACATGGTCTTACACTGGCACACATATCATCGCCGATGCCATGT
* *
73763722 CCCAGACATGGTCTTACACTGGCACACATATCATCGCTGATGCCATGT
1 CCCAAACATGGTCTTACACTGGCACACATATCATCGCCGATGCCATGT
*
73763770 CCCAAACATGGTCTTACACTGGCAAACAT
1 CCCAAACATGGTCTTACACTGGCACACAT
73763799 TAAATATGGT
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.26
Consensus pattern (48 bp):
CCCAAACATGGTCTTACACTGGCACACATATCATCGCCGATGCCATGT
Found at i:73764919 original size:13 final size:13
Alignment explanation
Indices: 73764879--73764954 Score: 91
Period size: 13 Copynumber: 5.9 Consensus size: 13
73764869 CACTTAAATT
73764879 TTTTC-AAAGCAC
1 TTTTCAAAAGCAC
* *
73764891 TTCTCAAAAGTAC
1 TTTTCAAAAGCAC
*
73764904 TTTTCAAAAGAAC
1 TTTTCAAAAGCAC
* *
73764917 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
*
73764930 TTTTTAAAAGCAC
1 TTTTCAAAAGCAC
73764943 TTTTCAAAAGCA
1 TTTTCAAAAGCA
73764955 ATGAAGAACT
Statistics
Matches: 52, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
12 4 0.08
13 48 0.92
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.33
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:73771018 original size:46 final size:46
Alignment explanation
Indices: 73770962--73771133 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
73770952 GGTTGAACAT
73770962 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * * *
73771008 CCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC
* * *
73771053 ATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* *
73771101 CCGAGCACGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
73771134 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 56 0.54
47 26 0.25
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
Found at i:73771118 original size:93 final size:93
Alignment explanation
Indices: 73770959--73771128 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
73770949 AATGGTTGAA
* * *
73770959 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAAACTCGTTGAGTT
1 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACACGTTGAGTT
73771024 GAGTCCGAGTTCGTGAGATGTAACTAGG
66 GAGTCCGAGTTCGTGAGATGTAACTAGG
* * *
73771052 CATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCACGTTGAGTT
1 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACACGTTGAGTT
73771117 GAGTCCGAGTTC
66 GAGTCCGAGTTC
73771129 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACACGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAGG
Found at i:73771395 original size:19 final size:20
Alignment explanation
Indices: 73771358--73771395 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
73771348 ATAAGGTGGT
73771358 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
73771378 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
73771396 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:73778553 original size:46 final size:46
Alignment explanation
Indices: 73778500--73778624 Score: 214
Period size: 46 Copynumber: 2.7 Consensus size: 46
73778490 AGTTGAACAT
* *
73778500 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
73778546 CCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
73778592 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
73778625 GGGGCGGGTT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:73778886 original size:19 final size:20
Alignment explanation
Indices: 73778849--73778886 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
73778839 ATAAGGTGGT
73778849 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
73778869 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
73778887 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:73784814 original size:46 final size:45
Alignment explanation
Indices: 73784764--73784937 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 45
73784754 GGTTTAACAT
73784764 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGC
* * *
73784810 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--GC
* * *
73784855 ATCCGAACTCGTTGAGTTGAGTCCAAGTTCATTTACGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGC
* *
73784903 CCGAGCTCGTTGAGTTGAGTCCGAGTACACTTAGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
73784938 GGCGGGTTAC
Statistics
Matches: 107, Mismatches: 12, Indels: 19
0.78 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 6 0.06
46 57 0.53
47 27 0.25
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATGC
Found at i:73786646 original size:21 final size:21
Alignment explanation
Indices: 73786621--73786672 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
73786611 GAAGACTTGA
73786621 GTTAAGTTAAAGGACACTCGG
1 GTTAAGTTAAAGGACACTCGG
73786642 GTTAAGTTAAAGGACACTCGG
1 GTTAAGTTAAAGGACACTCGG
73786663 GTTAAGTTAA
1 GTTAAGTTAA
73786673 GGGAAAGTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.27
Consensus pattern (21 bp):
GTTAAGTTAAAGGACACTCGG
Found at i:73791297 original size:51 final size:51
Alignment explanation
Indices: 73791157--73791335 Score: 164
Period size: 51 Copynumber: 3.5 Consensus size: 51
73791147 CTGATACCCG
* * * *
73791157 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTT-CACAAA
1 GTGGCCTGCACATAGTACCACACATGTGA-TCAAAGCTATCTT-TTACACATA
* * *
73791208 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTTACACATA
1 GTGGCCTGCACATAGTACCACACATGTGATCAAAGCTATCTTTTACACATA
* * * *** **
73791259 GTGGCCTGCACTTAATACCACACATGTGATCGAAGCTATCGGGTACGTATA
1 GTGGCCTGCACATAGTACCACACATGTGATCAAAGCTATCTTTTACACATA
* * *
73791310 GTAGCCTGCACTTAGTACTACACATG
1 GTGGCCTGCACATAGTACCACACATG
73791336 CGACCTAACC
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
50 2 0.02
51 104 0.97
52 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACATGTGATCAAAGCTATCTTTTACACATA
Found at i:73801989 original size:46 final size:47
Alignment explanation
Indices: 73801884--73802152 Score: 298
Period size: 47 Copynumber: 5.7 Consensus size: 47
73801874 AGGGTATAAT
*
73801884 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCCATC--AA-
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTC-T-CATCTTAAG
* * *
73801931 GTCGATGCCATGTCCTAGACATGTCTTACACTGGCT-TACATCTTGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTTAAG
* * *
73801978 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATCTTAAG
** **
73802024 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTTAAG
* * * *
73802072 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATCTTAAG
* *
73802118 GCCGATGCTATGTCCCAGACATGTCTTACATTGGC
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGC
73802153 ACACAAATAA
Statistics
Matches: 188, Mismatches: 27, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
44 5 0.03
46 78 0.41
47 80 0.43
48 25 0.13
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATCTTAAG
Found at i:73802059 original size:140 final size:139
Alignment explanation
Indices: 73801881--73802147 Score: 380
Period size: 140 Copynumber: 1.9 Consensus size: 139
73801871 CATAGGGTAT
*
73801881 AATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCCATCAA-GT-CGATGCCATGT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-CAT-AATGTGCGATG-CATGT
* * **
73801944 CCTAGACATGTCTTACACTGGCT-TACATCTTGAGGCCGATGC-ATGTCCCAGACATGTCTTACA
62 CCCAGACATGTCTTACACTAGCTCT-CATCTCAAGGCCGATGCTATGTCCCAGACATGTCTTACA
73802007 CTAGCTCTCATCTC
126 CTAGCTCTCATCTC
73802021 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGT-G-CGATGCATGTCC
* *
73802086 CAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCTATGTCCCAGACATGTCTTACA
64 CAGACATGTCTTACACTAGCTCTCATCTCAAGGCCGATGCTATGTCCCAGACATGTCTTACA
73802148 TTGGCACACA
Statistics
Matches: 114, Mismatches: 7, Indels: 11
0.86 0.05 0.08
Matches are distributed among these distances:
137 2 0.02
138 5 0.04
139 1 0.01
140 79 0.69
141 27 0.24
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (139 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGCGATGCATGTCCCA
GACATGTCTTACACTAGCTCTCATCTCAAGGCCGATGCTATGTCCCAGACATGTCTTACACTAGC
TCTCATCTC
Found at i:73802076 original size:94 final size:93
Alignment explanation
Indices: 73801884--73802152 Score: 366
Period size: 94 Copynumber: 2.9 Consensus size: 93
73801874 AGGGTATAAT
* * *
73801884 GCCGATGCCATGTCCTAGACATGGTCTTACACT-G-GCTCATCCATCAA-GTCGATGCCATGTCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-C-TCAATGCCGATGCCATGTCC
* **
73801946 TAGACATGTCTTACACTGGCTTACATCTTGAG
62 CAGACATGTCTTACACTGGCTTACATAATGAG
73801978 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGA
*
73802043 CATGGTCTTACACTGGCTCT-CATAATGTG
66 CAT-GTCTTACACTGGCT-TACATAATGAG
* *
73802072 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCTATGTCCCAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGA
*
73802137 CATGTCTTACATTGGC
66 CATGTCTTACACTGGC
73802153 ACACAAATAA
Statistics
Matches: 160, Mismatches: 10, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
92 14 0.09
93 47 0.29
94 98 0.61
95 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (93 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGA
CATGTCTTACACTGGCTTACATAATGAG
Found at i:73804937 original size:41 final size:41
Alignment explanation
Indices: 73804886--73804986 Score: 148
Period size: 41 Copynumber: 2.5 Consensus size: 41
73804876 TCAAATATTG
* *
73804886 TCCTTTTCAACCTTTTCATTTCATATCCTTTTCGGATATCA
1 TCCTTTTCAACCTTTTCATTTCATATCCTTTTCAGATAACA
** *
73804927 TCCTTTTCAACCTTTTCATTTGTTATCCTTTTCAGATAACT
1 TCCTTTTCAACCTTTTCATTTCATATCCTTTTCAGATAACA
*
73804968 TTCTTTTCAACCTTTTCAT
1 TCCTTTTCAACCTTTTCAT
73804987 AGATTCGGAA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.19, C:0.26, G:0.04, T:0.51
Consensus pattern (41 bp):
TCCTTTTCAACCTTTTCATTTCATATCCTTTTCAGATAACA
Found at i:73830426 original size:70 final size:71
Alignment explanation
Indices: 73830262--73831177 Score: 517
Period size: 70 Copynumber: 13.2 Consensus size: 71
73830252 AAGTAGTGCA
* * * * * **** * *
73830262 AGCTCAATCTACCAACTGTAATTTTAAGGCTT-GTAGGTTTAATATTTTAGCCC-CAAAACAGTT
1 AGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTCGCAGGTTCAATACCGCAACCCTCAAAATAGTT
*
73830325 AGTGCG
66 AGCGCG
* * * * *
73830331 AG-TTAAGCTTCTAGTTGTAATTTTAAGGCTTACG-A-GTTCAATACCACAACCCTCAAAATAGT
1 AGCTCAAGCTCCCAGCTGTAATTTTAAGGCTT-CGCAGGTTCAATACCGCAACCCTCAAAATAGT
73830393 TAGCGCG
65 TAGCGCG
* * * * * *
73830400 AGCTCAAGCTCCCAGTTGTAACTTTAAGGC-TCGCAGGTTCAATGCCACAGCCCCCAAAATAGTT
1 AGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTCGCAGGTTCAATACCGCAACCCTCAAAATAGTT
*
73830464 A-CTGAG
66 AGC-GCG
* * * * * *
73830470 AGCTCAAGCTCCCAACTGTAATTTTAAAGCTT-GCAGGTTCAATACTGTAGCCC-CTGAAATAGT
1 AGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTCGCAGGTTCAATACCGCAACCCTC-AAAATAGT
**
73830533 TAGCATG
65 TAGCGCG
* * ** * * * *
73830540 AGCTCAAACT-CC--C---AATTTTAAGGCTT-ACAGGTTCAATATTGTAGCCCCCAAAATAATT
1 AGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTCGCAGGTTCAATACCGCAACCCTCAAAATAGTT
73830598 AGCGCG
66 AGCGCG
* * * * * *
73830604 AGCTTAAGCTCCCAGCTATAGTTTTAAGGC-TCGCAGGTTCAATACTGC-AGCCTCGAAATAGTT
1 AGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTCGCAGGTTCAATACCGCAACCCTCAAAATAGTT
*
73830667 AGCGCA
66 AGCGCG
* * * * * * ** * *
73830673 AGCTCCAGATCCTAACTGTAACTTTAAGGC-TCGCATGTTCAATACCATAGCCC-CTGAAATAGT
1 AGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTCGCAGGTTCAATACCGCAACCCTC-AAAATAGT
*
73830736 TAGCGAG
65 TAGCGCG
* * * * * * * *
73830743 AGCTCAACCTCCCAGCTATAACTTTAAGGCTT-GTAGGTTCAATATCGTAGCTCCT-GAAATAGT
1 AGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTCGCAGGTTCAATACCGCAAC-CCTCAAAATAGT
* *
73830806 TAGCACA
65 TAGCGCG
* ** * * * * *
73830813 AGCTCCAGCTCCCAAATGTAACTTTAAGGC-TCGCAGGTTCAATATCGCAACCCCCAAAACAATT
1 AGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTCGCAGGTTCAATACCGCAACCCTCAAAATAGTT
* **
73830877 AGTGTA
66 AGCGCG
* * * * * * **
73830883 AGCTTAAGCTCTCAGCTGTAGTTTTAAGACTT-GCAGGTTCAATATCG-TAGTCTCTAAAATAGT
1 AGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTCGCAGGTTCAATACCGCAACCCTC-AAAATAGT
*
73830946 TAGCACG
65 TAGCGCG
** * *
73830953 AGCTCAAGCTCCCCAATTGTAGTTTTAAGGCTT-GCAGGTTCAATACCGCAACCCCCAAAATAGT
1 AGCTCAAGCT-CCCAGCTGTAATTTTAAGGCTTCGCAGGTTCAATACCGCAACCCTCAAAATAGT
*
73831017 TAGCGTG
65 TAGCGCG
*** * * * * * *
73831024 AGCTCAAGCTCTTGGTTGTAATTTTAAGGCTT-GTAGGTTCAATACTG-TAGCCTCCAAATCAGT
1 AGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTCGCAGGTTCAATACCGCAACCCTCAAAAT-AGT
73831087 TAGCGCG
65 TAGCGCG
* ** * * * * *
73831094 AGCTCAAGCTCCCAACTGTAATCCTAAGGC-TCGAAGATTTAATACCGC-ATCCTCCAAAGTAGT
1 AGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTCGCAGGTTCAATACCGCAACCCT-CAAAATAGT
73831157 TAGC-CTG
65 TAGCGC-G
* *
73831164 AGCCCACGCTCCCA
1 AGCTCAAGCTCCCA
73831178 ACTGATGTTA
Statistics
Matches: 658, Mismatches: 155, Indels: 67
0.75 0.18 0.08
Matches are distributed among these distances:
64 50 0.08
65 3 0.00
67 2 0.00
68 36 0.05
69 94 0.14
70 405 0.62
71 65 0.10
72 3 0.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (71 bp):
AGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTCGCAGGTTCAATACCGCAACCCTCAAAATAGTT
AGCGCG
Found at i:73830532 original size:140 final size:140
Alignment explanation
Indices: 73830386--73831160 Score: 741
Period size: 140 Copynumber: 5.6 Consensus size: 140
73830376 ACAACCCTCA
* * * *
73830386 AAATAGTTAGCGCGAGCTCAAGCTCCCAGTTGTAACTTTAAGGCTCGCAGGTTCAATGCCACAGC
1 AAATAGTTAGCACGAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCGCAGGTTCAATACCGCAGC
* *
73830451 CCCCAAAATAGTTA-CTGAGAGCTCAAGCTCCCAACTGTAATTTTAAAGCTTGCAGGTTCAATAC
66 CCCCAAAATAGTTAGC-GAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTGCAGGTTCAATAC
73830515 TGTAGCCCCTG
130 TGTAGCCCCTG
* * ** ** *
73830526 AAATAGTTAGCATGAGCTCAAACTCCCAA---T---TTTAAGGCTTACAGGTTCAATATTGTAGC
1 AAATAGTTAGCACGAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCGCAGGTTCAATACCGCAGC
* * * * * *
73830585 CCCCAAAATAATTAGCGCGAGCTTAAGCTCCCAGCTATAGTTTTAAGGCTCGCAGGTTCAATACT
66 CCCCAAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTGCAGGTTCAATACT
* *
73830650 GCAGCCTC-G
131 GTAGCCCCTG
* * * * * * * **
73830659 AAATAGTTAGCGCAAGCTCCAGATCCTAACTGTAACTTTAAGGCTCGCATGTTCAATACCATAGC
1 AAATAGTTAGCACGAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCGCAGGTTCAATACCGCAGC
** * * * *
73830724 CCCTGAAATAGTTAGCGAGAGCTCAACCTCCCAGCTATAACTTTAAGGCTTGTAGGTTCAATA-T
66 CCCCAAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTGCAGGTTCAATACT
*
73830788 CGTAGCTCCTG
131 -GTAGCCCCTG
* * * * *
73830799 AAATAGTTAGCACAAGCTCCAGCTCCCAAATGTAACTTTAAGGCTCGCAGGTTCAATATCGCAAC
1 AAATAGTTAGCACGAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCGCAGGTTCAATACCGCAGC
* * * * * * *
73830864 CCCCAAAACAATTAGTGTA-AGCTTAAGCTCTCAGCTGTAGTTTTAAGACTTGCAGGTTCAATA-
66 CCCCAAAATAGTTAGCG-AGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTGCAGGTTCAATAC
* * *
73830927 TCGTAGTCTCTA
130 T-GTAGCCCCTG
** * *
73830939 AAATAGTTAGCACGAGCTCAAGCTCCCCAATTGTAGTTTTAAGGCTTGCAGGTTCAATACCGCAA
1 AAATAGTTAGCACGAGCTCAAGCT-CCCAATTGTAACTTTAAGGCTCGCAGGTTCAATACCGCAG
* *** * *
73831004 CCCCCAAAATAGTTAGCGTGAGCTCAAGCTCTTGGTTGTAATTTTAAGGCTTGTAGGTTCAATAC
65 CCCCCAAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTGCAGGTTCAATAC
73831069 TGTAGCCTCC--
130 TGTAGCC-CCTG
* * * * * *
73831079 AAATCAGTTAGCGCGAGCTCAAGCTCCCAACTGTAA-TCCTAAGGCTCGAAGATTTAATACCGCA
1 AAAT-AGTTAGCACGAGCTCAAGCTCCCAATTGTAACT-TTAAGGCTCGCAGGTTCAATACCGCA
* * *
73831143 TCCTCCAAAGTAGTTAGC
64 GCCCCCAAAATAGTTAGC
73831161 CTGAGCCCAC
Statistics
Matches: 515, Mismatches: 104, Indels: 32
0.79 0.16 0.05
Matches are distributed among these distances:
133 23 0.04
134 83 0.16
135 1 0.00
136 1 0.00
137 1 0.00
138 1 0.00
139 82 0.16
140 209 0.41
141 112 0.22
142 2 0.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (140 bp):
AAATAGTTAGCACGAGCTCAAGCTCCCAATTGTAACTTTAAGGCTCGCAGGTTCAATACCGCAGC
CCCCAAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTAATTTTAAGGCTTGCAGGTTCAATACT
GTAGCCCCTG
Found at i:73830818 original size:203 final size:201
Alignment explanation
Indices: 73830349--73830970 Score: 475
Period size: 203 Copynumber: 3.0 Consensus size: 201
73830339 TTCTAGTTGT
* ** * * *
73830349 AATTTTAAGGCTTAC-GAGTTCAATACCACAACCCTCAAAATAGTTAGCGCGAGCTCAAGCTCCC
1 AATTTTAAGGCTTACAG-GTTCAATATCGTAGCCCCCAAAATAATTA-CGCGAG--CAAGCTCCC
* * *
73830413 AGTTGTAACTTTAAGGCTCGCAGGTTCAATGCCACAGCCCCCAAAATAGTTACTGAGAGCTCAAG
62 AGCTATAACTTTAAGGCTCGCAGGTTCAATACCACAGCCCCCAAAATAGTTACTGAGAGCTCAAG
* * * **
73830478 CTCCCAACTGTAATTTTAAAGCTTGCAGGTTCAATACTGTAGCCCCTGAAATAGTTAGCATGAGC
127 ATCCCAACTGTAACTTTAAAGCTCGCAGGTTCAATACCATAGCCCCTGAAATAGTTAGCATGAGC
73830543 TCAAACTCCC
192 TCAAACTCCC
*
73830553 AATTTTAAGGCTTACAGGTTCAATATTGTAGCCCCCAAAATAATTAGCGCGAGCTTAAGCTCCCA
1 AATTTTAAGGCTTACAGGTTCAATATCGTAGCCCCCAAAATAATTA-CGCGAGC--AAGCTCCCA
** ** * * *
73830618 GCTATAGTTTTAAGGCTCGCAGGTTCAATACTGCAG-CCTCGAAATAGTTAGC-GCA-AGCTCCA
63 GCTATAACTTTAAGGCTCGCAGGTTCAATACCACAGCCCCCAAAATAGTTA-CTG-AGAGCTCAA
* * *
73830680 GATCCTAACTGTAACTTTAAGGCTCGCATGTTCAATACCATAGCCCCTGAAATAGTTAGCGA-GA
126 GATCCCAACTGTAACTTTAAAGCTCGCAGGTTCAATACCATAGCCCCTGAAATAGTTAGC-ATGA
*
73830744 GCTCAACCTCCC
190 GCTCAAACTCCC
** * ** * * * *
73830756 AGCTATAACTTTAAGGCTTGTAGGTTCAATATCGTAGCTCCTGAAATAGTTAGCACAAGCTCCAG
1 A---AT---TTTAAGGCTTACAGGTTCAATATCGTAGCCCCCAAAATAATTA-CGCGAG--CAAG
** * * * * * * *
73830821 CTCCCAAATGTAACTTTAAGGCTCGCAGGTTCAATATCGCAACCCCCAAAACAATTAGTGTA-AG
57 CTCCCAGCTATAACTTTAAGGCTCGCAGGTTCAATACCACAGCCCCCAAAATAGTTACTG-AGAG
* * * * * * * * * * * *
73830885 CTTAAGCTCTCAGCTGT-AGTTTTAAGACTTGCAGGTTCAATATCGTAGTCTCTAAAATAGTTAG
121 CTCAAGATCCCAACTGTAACTTTAAAG-CTCGCAGGTTCAATACCATAGCCCCTGAAATAGTTAG
* *
73830949 CACGAGCTCAAGCTCCCC
185 CATGAGCTCAAACT-CCC
73830967 AATT
1 AATT
73830971 GTAGTTTTAA
Statistics
Matches: 332, Mismatches: 67, Indels: 37
0.76 0.15 0.08
Matches are distributed among these distances:
202 1 0.00
203 85 0.26
204 85 0.26
205 2 0.01
206 2 0.01
208 2 0.01
209 84 0.25
210 66 0.20
211 5 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (201 bp):
AATTTTAAGGCTTACAGGTTCAATATCGTAGCCCCCAAAATAATTACGCGAGCAAGCTCCCAGCT
ATAACTTTAAGGCTCGCAGGTTCAATACCACAGCCCCCAAAATAGTTACTGAGAGCTCAAGATCC
CAACTGTAACTTTAAAGCTCGCAGGTTCAATACCATAGCCCCTGAAATAGTTAGCATGAGCTCAA
ACTCCC
Found at i:73831276 original size:18 final size:18
Alignment explanation
Indices: 73831255--73831302 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
73831245 AATTAGGTAA
*
73831255 AAGTTTGAAATTTTTCTT
1 AAGTTTGAAATTTTACTT
* *
73831273 AAGTTTGAGAGTTTACTT
1 AAGTTTGAAATTTTACTT
*
73831291 GAGTTTGAAATT
1 AAGTTTGAAATT
73831303 CACTTAAGCT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.29, C:0.04, G:0.19, T:0.48
Consensus pattern (18 bp):
AAGTTTGAAATTTTACTT
Found at i:73831659 original size:31 final size:30
Alignment explanation
Indices: 73831602--73831660 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
73831592 GTAAATACTT
* * * *
73831602 AAAATTTGAGGGATTAAAGTGTAAATATGA
1 AAAAGTTGAAGGAATAAAGTGCAAATATGA
73831632 AAAAGTTGAAGGAATAATAGTGCAAATAT
1 AAAAGTTGAAGGAATAA-AGTGCAAATAT
73831661 TTTAAGGGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 14 0.58
31 10 0.42
ACGTcount: A:0.49, C:0.02, G:0.22, T:0.27
Consensus pattern (30 bp):
AAAAGTTGAAGGAATAAAGTGCAAATATGA
Found at i:73831921 original size:29 final size:31
Alignment explanation
Indices: 73831873--73831936 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
73831863 TTTATAGTTA
*
73831873 TTTAATTAGATAATTATTATT-TATTTAATAT
1 TTTAATAAGATAATTATTATTAT-TTTAATAT
*
73831904 TTTAATAAGAT-ATT-TTATTATTTTATTAT
1 TTTAATAAGATAATTATTATTATTTTAATAT
73831933 TTTA
1 TTTA
73831937 TTTAGTCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 16 0.53
30 4 0.13
31 10 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (31 bp):
TTTAATAAGATAATTATTATTATTTTAATAT
Found at i:73831925 original size:8 final size:8
Alignment explanation
Indices: 73831914--73831938 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
73831904 TTTAATAAGA
73831914 TATTTTAT
1 TATTTTAT
73831922 TATTTTAT
1 TATTTTAT
73831930 TATTTTAT
1 TATTTTAT
73831938 T
1 T
73831939 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:73836383 original size:21 final size:21
Alignment explanation
Indices: 73836350--73836409 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
73836340 TACTCAGAAT
* *
73836350 GTCAATCCTATGAATAATGGG
1 GTCAATCCTATGAACAATGGA
73836371 GTCAAGTCC-ATGAACAATGGA
1 GTCAA-TCCTATGAACAATGGA
73836392 GTCAAAT--TATGAACAATG
1 GTC-AATCCTATGAACAATG
73836410 ATAATATGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
20 10 0.29
21 19 0.56
22 5 0.15
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (21 bp):
GTCAATCCTATGAACAATGGA
Found at i:73836726 original size:18 final size:18
Alignment explanation
Indices: 73836703--73836741 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
73836693 AAACAACAAC
*
73836703 AATGATAATGATGATAAT
1 AATGATAATGATAATAAT
*
73836721 AATGATGATGATAATAAT
1 AATGATAATGATAATAAT
73836739 AAT
1 AAT
73836742 AGTAATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.15, T:0.33
Consensus pattern (18 bp):
AATGATAATGATAATAAT
Found at i:73836730 original size:15 final size:15
Alignment explanation
Indices: 73836710--73836738 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
73836700 AACAATGATA
73836710 ATGATGATAATAATG
1 ATGATGATAATAATG
73836725 ATGATGATAATAAT
1 ATGATGATAATAAT
73836739 AATAGTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.34
Consensus pattern (15 bp):
ATGATGATAATAATG
Found at i:73837730 original size:19 final size:19
Alignment explanation
Indices: 73837695--73837747 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
73837685 GTTAAAAATA
* *
73837695 ATTTCTAAATAATTTTTTTT
1 ATTTTTAAAT-ATTTTTTAT
73837715 ATTTTTAAATATTTTTTAT
1 ATTTTTAAATATTTTTTAT
73837734 ATTATTTAAA-ATTT
1 ATT-TTTAAATATTT
73837748 AAGTTTAGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (19 bp):
ATTTTTAAATATTTTTTAT
Found at i:73839767 original size:10 final size:11
Alignment explanation
Indices: 73839751--73839790 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
73839741 TTATTTCTTT
73839751 TTAATAATTTC
1 TTAATAATTTC
73839762 TT-ATAA-TTC
1 TTAATAATTTC
*
73839771 TTAATAATTTT
1 TTAATAATTTC
73839782 TTAATAATT
1 TTAATAATT
73839791 ATTTGAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
9 5 0.19
10 8 0.31
11 13 0.50
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (11 bp):
TTAATAATTTC
Found at i:73839776 original size:20 final size:21
Alignment explanation
Indices: 73839751--73839790 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
73839741 TTATTTCTTT
73839751 TTAATAATTTCTT-ATAATTC
1 TTAATAATTTCTTAATAATTC
*
73839771 TTAATAATTTTTTAATAATT
1 TTAATAATTTCTTAATAATT
73839791 ATTTGAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (21 bp):
TTAATAATTTCTTAATAATTC
Found at i:73843481 original size:20 final size:20
Alignment explanation
Indices: 73843452--73843493 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
73843442 CAACCAAAAT
*
73843452 AAAACCAAAT-ATTAAACCA
1 AAAACCAAATAATAAAACCA
73843471 AAAATCCAAATAATAAAACCA
1 AAAA-CCAAATAATAAAACCA
73843492 AA
1 AA
73843494 TTAATAGTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.20
20 6 0.30
21 10 0.50
ACGTcount: A:0.67, C:0.19, G:0.00, T:0.14
Consensus pattern (20 bp):
AAAACCAAATAATAAAACCA
Found at i:73844621 original size:15 final size:14
Alignment explanation
Indices: 73844592--73844630 Score: 60
Period size: 15 Copynumber: 2.7 Consensus size: 14
73844582 TTTAATCTAT
73844592 TATTTCTATTATTA
1 TATTTCTATTATTA
73844606 TATTTCTATGTATTA
1 TATTTCTAT-TATTA
*
73844621 TCTTTCTATT
1 TATTTCTATT
73844631 TGTATTTATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.23, C:0.10, G:0.03, T:0.64
Consensus pattern (14 bp):
TATTTCTATTATTA
Found at i:73844749 original size:26 final size:27
Alignment explanation
Indices: 73844694--73844751 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 27
73844684 TAATATTATT
* *
73844694 TTATTATTATCAGTTATTATTATTCCTA
1 TTATTATTAACAG-TATCATTATTCCTA
*
73844722 TTATTATTAACA-TATCATTATTCTTA
1 TTATTATTAACAGTATCATTATTCCTA
73844748 TTAT
1 TTAT
73844752 CATTCTTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 16 0.59
28 11 0.41
ACGTcount: A:0.31, C:0.10, G:0.02, T:0.57
Consensus pattern (27 bp):
TTATTATTAACAGTATCATTATTCCTA
Found at i:73844792 original size:3 final size:3
Alignment explanation
Indices: 73844784--73844946 Score: 88
Period size: 3 Copynumber: 55.0 Consensus size: 3
73844774 ATCAGCGTGG
* * ** * *
73844784 TAT TAT TAT TAT TAT TAT TAT TAC TAT TAC CCT TAT TAA TA- TAT CAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
73844831 TAT TTT TAT TAT TAT T-T T-T TAT TAT TGT TAT TAT TAA TA- TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
73844876 TAC TAT TCT TCT TAAT GTAT TAT TATT TAT T-T TCCAC T-T TAT TAT
1 TAT TAT TAT TAT T-AT -TAT TAT TA-T TAT TAT T--AT TAT TAT TAT
* * *
73844921 TAT TGT T-G TAT TAT TAC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
73844947 CACCATGTTA
Statistics
Matches: 122, Mismatches: 27, Indels: 22
0.71 0.16 0.13
Matches are distributed among these distances:
2 12 0.10
3 102 0.84
4 6 0.05
5 2 0.02
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:73845077 original size:12 final size:12
Alignment explanation
Indices: 73845015--73845078 Score: 56
Period size: 12 Copynumber: 5.1 Consensus size: 12
73845005 TTTATTTACG
*
73845015 TTATTATTATTA
1 TTATTATTATTT
73845027 TTATTATTATTTT
1 TTATTATTA-TTT
* **
73845040 CGTTGTTGGTATTT
1 --TTATTATTATTT
*
73845054 GTATTATTATTT
1 TTATTATTATTT
73845066 TTATTATTATTT
1 TTATTATTATTT
73845078 T
1 T
73845079 CACCATTTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
12 29 0.73
13 2 0.05
14 3 0.08
15 6 0.15
ACGTcount: A:0.22, C:0.02, G:0.08, T:0.69
Consensus pattern (12 bp):
TTATTATTATTT
Found at i:73851472 original size:10 final size:10
Alignment explanation
Indices: 73851453--73851502 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
73851443 TTAAATTCTA
73851453 AAAGATAAAT
1 AAAGATAAAT
73851463 ACAA-ATAAAT
1 A-AAGATAAAT
*
73851473 AAAGATAATT
1 AAAGATAAAT
73851483 AAAGATAAAT
1 AAAGATAAAT
73851493 GAAA-ATAAAT
1 -AAAGATAAAT
73851503 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:73867546 original size:61 final size:61
Alignment explanation
Indices: 73867451--73867569 Score: 220
Period size: 61 Copynumber: 2.0 Consensus size: 61
73867441 TCTACTACAC
*
73867451 CAATCCGCCTAGGTCTATGGATTACCTAAACAGAACAGACAACAGATGTGAGTTTACACAT
1 CAATCCACCTAGGTCTATGGATTACCTAAACAGAACAGACAACAGATGTGAGTTTACACAT
*
73867512 CAATCCACCTAGGTCTGTGGATTACCTAAACAGAACAGACAACAGATGTGAGTTTACA
1 CAATCCACCTAGGTCTATGGATTACCTAAACAGAACAGACAACAGATGTGAGTTTACA
73867570 TAAACTCAGT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (61 bp):
CAATCCACCTAGGTCTATGGATTACCTAAACAGAACAGACAACAGATGTGAGTTTACACAT
Found at i:73870899 original size:20 final size:20
Alignment explanation
Indices: 73870855--73870906 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
73870845 AGTAAATTAT
* *
73870855 ATTATTTTTTAAATTCTTTT
1 ATTATTTTTTAAAATCTTTA
73870875 A-TATTTTTATAAAAT-TTTA
1 ATTATTTTT-TAAAATCTTTA
73870894 ATTATTTATTTAA
1 ATTATTT-TTTAA
73870907 TTATTATTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
19 11 0.41
20 14 0.52
21 2 0.07
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (20 bp):
ATTATTTTTTAAAATCTTTA
Found at i:73873405 original size:12 final size:13
Alignment explanation
Indices: 73873388--73873416 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
73873378 TTTTTAATTT
73873388 ATATAAAAAA-TA
1 ATATAAAAAAGTA
73873400 ATATAAAAAAGTA
1 ATATAAAAAAGTA
73873413 ATAT
1 ATAT
73873417 GAGCCGGACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (13 bp):
ATATAAAAAAGTA
Found at i:73882518 original size:18 final size:17
Alignment explanation
Indices: 73882480--73882518 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
73882470 GGTTTGAAAA
73882480 TTTTAATTAATTAAATTT
1 TTTTAATTAA-TAAATTT
73882498 TTTTAATTAA-AAATTT
1 TTTTAATTAATAAATTT
73882514 ATTTT
1 -TTTT
73882519 CATCCCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 6 0.30
17 4 0.20
18 10 0.50
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTTAATTAATAAATTT
Found at i:73883550 original size:12 final size:12
Alignment explanation
Indices: 73883533--73883558 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
73883523 AAGTTAAATA
73883533 AACATGTTCTTG
1 AACATGTTCTTG
73883545 AACATGTTCTTG
1 AACATGTTCTTG
73883557 AA
1 AA
73883559 TATTAAACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (12 bp):
AACATGTTCTTG
Found at i:73883669 original size:16 final size:16
Alignment explanation
Indices: 73883648--73883681 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
73883638 AACTGAACAC
*
73883648 AAACAAACTTAAAAAT
1 AAACAAACATAAAAAT
*
73883664 AAACAAACATGAAAAT
1 AAACAAACATAAAAAT
73883680 AA
1 AA
73883682 GTTTCTTCGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.71, C:0.12, G:0.03, T:0.15
Consensus pattern (16 bp):
AAACAAACATAAAAAT
Found at i:73885423 original size:21 final size:21
Alignment explanation
Indices: 73885399--73885438 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
73885389 GGACTAAATC
* * *
73885399 GAGAACTTTTAAATTTTTTTT
1 GAGAAATTTCAAAATTTTTTT
73885420 GAGAAATTTCAAAATTTTT
1 GAGAAATTTCAAAATTTTT
73885439 CCTAGGTGCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.05, G:0.10, T:0.50
Consensus pattern (21 bp):
GAGAAATTTCAAAATTTTTTT
Found at i:73887681 original size:37 final size:37
Alignment explanation
Indices: 73887628--73887730 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
73887618 CGAATAGTCC
* *
73887628 CCACAAGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
73887665 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
73887702 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
73887731 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:73887929 original size:48 final size:48
Alignment explanation
Indices: 73887871--73888304 Score: 679
Period size: 48 Copynumber: 9.0 Consensus size: 48
73887861 ATATACACAC
* * * *
73887871 ATCTCCTACATATTTCATATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
73887919 ATCTCATACATATATCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
73887967 ATCTCATACATATTTCATAATAGCCATTCGGTTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
73888015 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
73888063 ATCTCATACATATTTCATAATAGCCATTCGGTTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
73888111 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
73888159 ATCTCATACATATATCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
73888207 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
73888255 ATCTCATACATATATCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
73888303 AT
1 AT
73888305 GTCACACTAG
Statistics
Matches: 349, Mismatches: 37, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 349 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:73888262 original size:37 final size:37
Alignment explanation
Indices: 73888212--73888341 Score: 107
Period size: 37 Copynumber: 3.2 Consensus size: 37
73888202 TATATATCTC
*
73888212 ATACATATTTCATATTAGCCATTCGGCTTTACCACAT
1 ATACATATCTCATATTAGCCATTCGGCTTTACCACAT
73888249 ATACATATCTCATACATATATCACACTAGCCATTCGGCTTTACCACAT
1 ATACATA--TC-T-C--ATAT-----TAGCCATTCGGCTTTACCACAT
* * * *
73888297 ATACATATGTCACACTAGCCATTCGGCTTTACCACAC
1 ATACATATCTCATATTAGCCATTCGGCTTTACCACAT
*
73888334 ATATATAT
1 ATACATAT
73888342 ATTTATGTTG
Statistics
Matches: 76, Mismatches: 6, Indels: 22
0.73 0.06 0.21
Matches are distributed among these distances:
37 35 0.46
39 1 0.01
40 1 0.01
41 1 0.01
42 2 0.03
43 4 0.05
44 1 0.01
45 1 0.01
46 1 0.01
48 29 0.38
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.33
Consensus pattern (37 bp):
ATACATATCTCATATTAGCCATTCGGCTTTACCACAT
Found at i:73898265 original size:33 final size:32
Alignment explanation
Indices: 73898219--73898281 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 32
73898209 TCTATAGAGT
73898219 TCAATTGAATTACCTA-TCCAGGCTAAATCCAG
1 TCAATTGAATTACC-AGTCCAGGCTAAATCCAG
* *
73898251 TCAATTAGGATTACCAGTCCAGGCTATATCC
1 TCAATT-GAATTACCAGTCCAGGCTAAATCC
73898282 TAATTGAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 7 0.26
33 20 0.74
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (32 bp):
TCAATTGAATTACCAGTCCAGGCTAAATCCAG
Found at i:73899963 original size:47 final size:47
Alignment explanation
Indices: 73899910--73900039 Score: 118
Period size: 47 Copynumber: 2.8 Consensus size: 47
73899900 GTGCAAATAA
* *
73899910 TACCTTGATTTGGATATAGGCCATAATATAGGTATTC-AGAGAGGAGT
1 TACCTTGATTTGGATATAGGCCATAATATAGGTACTCTAG-GAGAAGT
* * * * ** *
73899957 TACCTTGGTTTGGCTATGGGCTATGGTATAGGTACTCTAGGATAAGT
1 TACCTTGATTTGGATATAGGCCATAATATAGGTACTCTAGGAGAAGT
** * **
73900004 TACCTTGATTTGCCTATGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGATATAGGCCATAATATAGGTACT
73900040 TATCGATTAA
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
47 68 0.97
48 2 0.03
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.35
Consensus pattern (47 bp):
TACCTTGATTTGGATATAGGCCATAATATAGGTACTCTAGGAGAAGT
Found at i:73905985 original size:78 final size:72
Alignment explanation
Indices: 73905846--73905992 Score: 206
Period size: 78 Copynumber: 2.0 Consensus size: 72
73905836 GAGCTAGTGT
* *
73905846 AAGACATGTCTGGGACATGCATCGGCTACGAGATGTATCAGTGTAAGACCATGTCTTGGACATGG
1 AAGACATGTCTGGGACATGCATCGGCTACGAGATGTAGCAGTGTAAGACCATGTCTGGGACATGG
73905911 CATCCGA
66 CATCCGA
73905918 AAGACTATGTCTGGGACATGGCATCGGC-ACGAGTATGTGAGAGCTAGTGTAAGACCATGTCTGG
1 AAGAC-ATGTCTGGGACAT-GCATCGGCTACGAG-ATGT---AGC-AGTGTAAGACCATGTCTGG
73905982 GACATGGCATC
59 GACATGGCATC
73905993 GGCTTCAATT
Statistics
Matches: 66, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
72 5 0.08
73 18 0.27
74 12 0.18
77 2 0.03
78 29 0.44
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (72 bp):
AAGACATGTCTGGGACATGCATCGGCTACGAGATGTAGCAGTGTAAGACCATGTCTGGGACATGG
CATCCGA
Found at i:73919756 original size:44 final size:44
Alignment explanation
Indices: 73919706--73920067 Score: 207
Period size: 44 Copynumber: 8.3 Consensus size: 44
73919696 GATCTTATCT
*
73919706 CCCTAAGCAGTAGTGG-AGCAGATCGAAGACGAAGAACCTTAACC
1 CCCTAAGCAGTAG-GGAAACAGATCGAAGACGAAGAACCTTAACC
* * * * * *
73919750 CCCTAAGCAGTAGGGTAACAG-GCTGAATTTAC--A-AATCTTAGCT
1 CCCTAAGCAGTAGGGAAACAGATC-GAA--GACGAAGAACCTTAACC
**
73919793 CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAACC
1 CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGAACCTTAACC
* * * * * *
73919837 CCCTAAGCAGTAGGGTAACAG-CCTGAATTTAC--AG-ATCTTAGCT
1 CCCTAAGCAGTAGGGAAACAGATC-GAA--GACGAAGAACCTTAACC
* ** *
73919880 CCCTAAGCAGTAGGGAAGCAGATCGAAGACGAAGGGCCTTAAAC
1 CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGAACCTTAACC
* * * ** * *
73919924 CCCTAAGCAGTAGTGTAACAG-GCTGAATTTC-CAG-ATCTTAACC
1 CCCTAAGCAGTAGGGAAACAGATC-GAA-GACGAAGAACCTTAACC
* * ** * *
73919967 CCCTAAGCAGTAGGGTAACAGA-CCAA-ATTACAG-ATCTTAACG
1 CCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGAACCTTAACC
* *
73920009 CCCTAAGCAGTAGGGAAACAGATCGAAGATGAATG-GCCTTAACC
1 CCCTAAGCAGTAGGGAAACAGATCGAAGACGAA-GAACCTTAACC
73920053 CCCTAAGCAGTAGGG
1 CCCTAAGCAGTAGGG
73920068 TAATAGGCTG
Statistics
Matches: 243, Mismatches: 52, Indels: 46
0.71 0.15 0.13
Matches are distributed among these distances:
41 4 0.02
42 33 0.14
43 96 0.40
44 105 0.43
45 1 0.00
46 4 0.02
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.18
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGAACCTTAACC
Found at i:73919815 original size:87 final size:86
Alignment explanation
Indices: 73919551--73919988 Score: 551
Period size: 87 Copynumber: 5.1 Consensus size: 86
73919541 AGAATGGTGT
* * * *
73919551 AACAGATCGAAGACAAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACAGACCGAATTGT--AGAT
1 AACAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATT-TACAGAT
* **
73919614 CTTATCTCCCTAAGCAAAAGTGG
65 CTTAGCTCCCTAAGCAGTAG-GG
* * ** ** * *
73919637 AGCAGATCAAAGACGAAGAACCTTAAA-CCCTAAATAGTAGGGTAATAGGTTGAA-TTACAGATC
1 AACAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATC
*
73919700 TTATCTCCCTAAGCAGTAGTGG
66 TTAGCTCCCTAAGCAGTAG-GG
* ** * *
73919722 AGCAGATCGAAGACGAAGAACCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAAATC
1 AACAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATC
73919787 TTAGCTCCCTAAGCAGTAGGG
66 TTAGCTCCCTAAGCAGTAGGG
* *
73919808 AAACAGATCGAAGACGAAGGGCCTTAACCCCCTAAGCAGTAGGGTAACAGCCTGAATTTACAGAT
1 -AACAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
73919873 CTTAGCTCCCTAAGCAGTAGGG
65 CTTAGCTCCCTAAGCAGTAGGG
* *
73919895 AAGCAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGTGTAACAGGCTGAATTTCCAGAT
1 AA-CAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
* *
73919960 CTTAACCCCCTAAGCAGTAGGG
65 CTTAGCTCCCTAAGCAGTAGGG
73919982 TAACAGA
1 -AACAGA
73919989 CCAAATTACA
Statistics
Matches: 312, Mismatches: 33, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
83 1 0.00
84 1 0.00
85 71 0.23
86 48 0.15
87 189 0.61
88 2 0.01
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.20
Consensus pattern (86 bp):
AACAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATC
TTAGCTCCCTAAGCAGTAGGG
Found at i:73920025 original size:129 final size:129
Alignment explanation
Indices: 73919830--73920117 Score: 452
Period size: 129 Copynumber: 2.2 Consensus size: 129
73919820 GACGAAGGGC
* * *
73919830 CTTAACCCCCTAAGCAGTAGGGTAACAGCCTGAATTTACAGATCTTAGCTCCCTAAGCAGTAGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGCC-GAAATTACAGATCTTAACGCCCTAAGCAGTAGGG
* * *
73919895 AAGCAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGTGTAACAGGCTGAATTTCCAGAT
65 AAACAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
73919960 CTTAACCCCCTAAGCAGTAGGGTAACAGACC-AAATTACAGATCTTAACGCCCTAAGCAGTAGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAG-CCGAAATTACAGATCTTAACGCCCTAAGCAGTAGGG
* * * *
73920024 AAACAGATCGAAGATGAATGGCCTTAACCCCCTAAGCAGTAGGGTAATAGGCTGAATTTACAGAT
65 AAACAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
*
73920089 CTTAACCCCCTAAGTAGTAGGGTAACAGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGC
73920118 TGGAAATCAA
Statistics
Matches: 146, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
128 1 0.01
129 115 0.79
130 28 0.19
131 2 0.01
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.20
Consensus pattern (129 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGCCGAAATTACAGATCTTAACGCCCTAAGCAGTAGGGA
AACAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
Found at i:73937780 original size:43 final size:43
Alignment explanation
Indices: 73937732--73937818 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
73937722 CACTTAAATT
73937732 TTATAGAAATATTTATAATTTTTTAGGTGATAACATAGCACAA
1 TTATAGAAATATTTATAATTTTTTAGGTGATAACATAGCACAA
73937775 TTATAGAAATATTTATAATTTTTTAGGTGATAACATAGCACAA
1 TTATAGAAATATTTATAATTTTTTAGGTGATAACATAGCACAA
73937818 T
1 T
73937819 ATCAAAGTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.40
Consensus pattern (43 bp):
TTATAGAAATATTTATAATTTTTTAGGTGATAACATAGCACAA
Found at i:73940818 original size:21 final size:21
Alignment explanation
Indices: 73940774--73940819 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
73940764 ATTTTTTAAA
* *
73940774 AAAATATTATTAAAATTTTTT
1 AAAATATTATTAAAATTATAT
73940795 AAAATATTA-TAAATATTATAT
1 AAAATATTATTAAA-ATTATAT
73940816 AAAA
1 AAAA
73940820 ATGAGAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
AAAATATTATTAAAATTATAT
Found at i:73941125 original size:10 final size:9
Alignment explanation
Indices: 73941101--73941152 Score: 52
Period size: 9 Copynumber: 5.6 Consensus size: 9
73941091 TTCTCACTCC
73941101 TTTTATAAT
1 TTTTATAAT
73941110 TTTTATAAT
1 TTTTATAAT
*
73941119 GTTTTATAAAA
1 -TTTTAT-AAT
73941130 TTTTA-ATAT
1 TTTTATA-AT
*
73941139 TTTTTTAAT
1 TTTTATAAT
73941148 TTTTA
1 TTTTA
73941153 ATATATACAT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
8 1 0.03
9 20 0.57
10 12 0.34
11 2 0.06
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:73953058 original size:33 final size:33
Alignment explanation
Indices: 73953016--73953080 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
73953006 ATCCCCTACC
* *
73953016 AAATGACAAAACCCAACTTTCTACTTTATGGAG
1 AAATGACAAAAACCAACTTTCTACCTTATGGAG
*
73953049 AAATGACAAAAACCAGCTTTCTACCTTATGGA
1 AAATGACAAAAACCAACTTTCTACCTTATGGA
73953081 AAAGGGAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.40, C:0.22, G:0.12, T:0.26
Consensus pattern (33 bp):
AAATGACAAAAACCAACTTTCTACCTTATGGAG
Found at i:73954268 original size:9 final size:8
Alignment explanation
Indices: 73954250--73954283 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
73954240 AAACATGGTG
*
73954250 TTTTTGTT
1 TTTTTATT
73954258 TTTTTATT
1 TTTTTATT
73954266 TTTTTA-T
1 TTTTTATT
73954273 TTTTTATT
1 TTTTTATT
73954281 TTT
1 TTT
73954284 CGTCTTCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
7 7 0.29
8 17 0.71
ACGTcount: A:0.09, C:0.00, G:0.03, T:0.88
Consensus pattern (8 bp):
TTTTTATT
Found at i:73956353 original size:14 final size:14
Alignment explanation
Indices: 73956315--73956357 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
73956305 CAAAATGTAC
73956315 AATATAATTAAA-T
1 AATATAATTAAATT
73956328 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
73956343 AA-ATAATTTAATT
1 AATATAATTAAATT
73956356 AA
1 AA
73956358 CTGTTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:73959920 original size:16 final size:16
Alignment explanation
Indices: 73959899--73959933 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
73959889 ATTTCAAGTC
73959899 TTACAGCCTATTAATT
1 TTACAGCCTATTAATT
73959915 TTACAGCCTATTAATT
1 TTACAGCCTATTAATT
73959931 TTA
1 TTA
73959934 GTCAAAGTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.46
Consensus pattern (16 bp):
TTACAGCCTATTAATT
Found at i:73964832 original size:39 final size:40
Alignment explanation
Indices: 73964778--73964859 Score: 132
Period size: 40 Copynumber: 2.1 Consensus size: 40
73964768 ACATCTTCAG
*
73964778 TTGCACGTACTTTACCCGGA-AACTTATGTGCAT-AGATTC
1 TTGCACATACTTTACCCGGACAACTTATGTGCATGA-ATTC
73964817 TTGCACATACTTTACCCGGACAACTTATGTGCATGAATTC
1 TTGCACATACTTTACCCGGACAACTTATGTGCATGAATTC
73964857 TTG
1 TTG
73964860 TGTACATGAA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
39 19 0.47
40 20 0.50
41 1 0.03
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (40 bp):
TTGCACATACTTTACCCGGACAACTTATGTGCATGAATTC
Found at i:73964857 original size:40 final size:39
Alignment explanation
Indices: 73964778--73964859 Score: 130
Period size: 39 Copynumber: 2.1 Consensus size: 39
73964768 ACATCTTCAG
*
73964778 TTGCACGTACTTTACCCGGAAACTTATGTGCATAGATTC
1 TTGCACATACTTTACCCGGAAACTTATGTGCATAGATTC
73964817 TTGCACATACTTTACCCGGACAACTTATGTGCAT-GAATTC
1 TTGCACATACTTTACCCGGA-AACTTATGTGCATAG-ATTC
73964857 TTG
1 TTG
73964860 TGTACATGAA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
39 20 0.50
40 20 0.50
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (39 bp):
TTGCACATACTTTACCCGGAAACTTATGTGCATAGATTC
Found at i:73965632 original size:10 final size:11
Alignment explanation
Indices: 73965601--73965633 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
73965591 TGGCCCGACC
73965601 ATATTAATTTT
1 ATATTAATTTT
*
73965612 ATATTATTTTT
1 ATATTAATTTT
73965623 ATA-TAATTTT
1 ATATTAATTTT
73965633 A
1 A
73965634 AAAAATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 7 0.35
11 13 0.65
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
ATATTAATTTT
Found at i:73965657 original size:18 final size:18
Alignment explanation
Indices: 73965634--73965673 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
73965624 TATAATTTTA
*
73965634 AAAAATA-TATAATACATC
1 AAAAATACTA-AAAACATC
73965652 AAAAATACTAAAAACATC
1 AAAAATACTAAAAACATC
73965670 AAAA
1 AAAA
73965674 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATACTAAAAACATC
Found at i:73976666 original size:12 final size:12
Alignment explanation
Indices: 73976644--73976673 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
73976634 TCTGTAACAG
73976644 CTTTGTTTTTCTT
1 CTTT-TTTTTCTT
73976657 CTTTTTTTTCTT
1 CTTTTTTTTCTT
73976669 CTTTT
1 CTTTT
73976674 GGTCATCCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.80
Consensus pattern (12 bp):
CTTTTTTTTCTT
Found at i:73989594 original size:33 final size:33
Alignment explanation
Indices: 73989557--73989624 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
73989547 ATTATAGAAG
73989557 ATAGCCTGCATTAGATTTATTTATTTATTTATT
1 ATAGCCTGCATTAGATTTATTTATTTATTTATT
73989590 ATAGCCTGCATTAGATTTATTTATTTATTTATT
1 ATAGCCTGCATTAGATTTATTTATTTATTTATT
73989623 AT
1 AT
73989625 GAATCATAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.54
Consensus pattern (33 bp):
ATAGCCTGCATTAGATTTATTTATTTATTTATT
Found at i:73989608 original size:29 final size:30
Alignment explanation
Indices: 73989557--73989618 Score: 90
Period size: 29 Copynumber: 2.0 Consensus size: 30
73989547 ATTATAGAAG
73989557 ATAGCCTGCATTAGATTTATTTATTTATTTATT
1 ATAGCCTGCATTAG---TATTTATTTATTTATT
73989590 ATAGCCTGCATTAG-ATTTATTTATTTATT
1 ATAGCCTGCATTAGTATTTATTTATTTATT
73989619 TATTATGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
29 15 0.52
33 14 0.48
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.53
Consensus pattern (30 bp):
ATAGCCTGCATTAGTATTTATTTATTTATT
Found at i:73995513 original size:13 final size:13
Alignment explanation
Indices: 73995495--73995523 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
73995485 AACTAAGGTT
73995495 AAAATAGTAAATG
1 AAAATAGTAAATG
73995508 AAAATAGTAAATG
1 AAAATAGTAAATG
73995521 AAA
1 AAA
73995524 TAATATGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.14, T:0.21
Consensus pattern (13 bp):
AAAATAGTAAATG
Found at i:73997029 original size:7 final size:7
Alignment explanation
Indices: 73997017--73997079 Score: 58
Period size: 7 Copynumber: 8.9 Consensus size: 7
73997007 ACCTTATTTT
73997017 TATATTA
1 TATATTA
73997024 TATATTA
1 TATATTA
73997031 TA-ATTA
1 TATATTA
*
73997037 TTTTATTA
1 -TATATTA
73997045 TATATTA
1 TATATTA
73997052 TTTATATTA
1 --TATATTA
73997061 T-TATTA
1 TATATTA
* *
73997067 TCTATTG
1 TATATTA
73997074 TATATT
1 TATATT
73997080 GTTTTTCACA
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
6 10 0.21
7 26 0.55
8 4 0.09
9 7 0.15
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (7 bp):
TATATTA
Found at i:73997053 original size:3 final size:3
Alignment explanation
Indices: 73997010--73997134 Score: 62
Period size: 3 Copynumber: 40.3 Consensus size: 3
73997000 TTTTTTAACC
* *
73997010 TTA TTT TTA -TA TTA TATA TTA TAA TTA TT- TTA TTA TATA TTA TT-
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * * **
73997054 TATA TTA TTA TTA TCTA TTG TATA TTG TTT TTCA CAAA TTA TTA TTA
1 T-TA TTA TTA TTA T-TA TTA T-TA TTA TTA TT-A -TTA TTA TTA TTA
*
73997101 TT- TTA -CA TTA TTA CTTA TATA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA -TTA T-TA TTA TTA TTA TTA T
73997135 GTTTTTACTT
Statistics
Matches: 93, Mismatches: 15, Indels: 28
0.68 0.11 0.21
Matches are distributed among these distances:
2 8 0.09
3 66 0.71
4 19 0.20
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:73997072 original size:19 final size:18
Alignment explanation
Indices: 73997010--73997079 Score: 72
Period size: 19 Copynumber: 3.8 Consensus size: 18
73997000 TTTTTTAACC
73997010 TTATT-TTTATATTATATA
1 TTATTATTTATATTAT-TA
* *
73997028 TTA-TAATTATTTTATTA
1 TTATTATTTATATTATTA
73997045 TATATTATTTATATTATTA
1 T-TATTATTTATATTATTA
73997064 TTATCTATTGTATATT
1 TTAT-TATT-TATATT
73997080 GTTTTTCACA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
17 4 0.09
18 16 0.37
19 17 0.40
20 6 0.14
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:73997127 original size:30 final size:30
Alignment explanation
Indices: 73997011--73997132 Score: 111
Period size: 30 Copynumber: 3.9 Consensus size: 30
73997001 TTTTTAACCT
* *
73997011 TATTTTTATATTATATATTATAATTATTTTA
1 TATTATTAT-TTATATATTATTATTATTTTA
*
73997042 TTATATATTATTTATATTATTATTATCTATTGTA
1 -TAT-TATTATTTATA-TATTATTAT-TATTTTA
* * *
73997076 TATTGTT-TTTCACAAATTATTATTATTTTA
1 TATTATTATTT-ATATATTATTATTATTTTA
* *
73997106 CATTATTACTTATATATTATTATTATT
1 TATTATTATTTATATATTATTATTATT
73997133 ATGTTTTTAC
Statistics
Matches: 73, Mismatches: 12, Indels: 12
0.75 0.12 0.12
Matches are distributed among these distances:
30 25 0.34
31 13 0.18
32 13 0.18
33 16 0.22
34 6 0.08
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (30 bp):
TATTATTATTTATATATTATTATTATTTTA
Found at i:73997214 original size:48 final size:50
Alignment explanation
Indices: 73997106--73997202 Score: 121
Period size: 52 Copynumber: 2.0 Consensus size: 50
73997096 TATTATTTTA
* *
73997106 CATTATTACTTATATATTATTATTATTATGTTTTTACTTGTATCATATATT
1 CATTATTATTTATATATTATTATTATTATGTTTTTA-TTGCATCATATATT
73997157 CATTAATTATTTATATA-TATTATGTATTAT-TTTTT-TTGCAT-ATATA
1 CATT-ATTATTTATATATTATTAT-TATTATGTTTTTATTGCATCATATA
73997203 CTTTCATATT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
48 5 0.12
49 5 0.12
51 15 0.36
52 17 0.40
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (50 bp):
CATTATTATTTATATATTATTATTATTATGTTTTTATTGCATCATATATT
Found at i:73997461 original size:15 final size:16
Alignment explanation
Indices: 73997441--73997475 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
73997431 TATTCTAAAC
73997441 TTATATATATA-TTTA
1 TTATATATATATTTTA
*
73997456 TTATATATTTATTTTA
1 TTATATATATATTTTA
73997472 TTAT
1 TTAT
73997476 TTTATAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TTATATATATATTTTA
Found at i:73997551 original size:17 final size:17
Alignment explanation
Indices: 73997531--73997589 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
73997521 TTAAAAACCA
73997531 ATATATTTTTATTTTTT
1 ATATATTTTTATTTTTT
*
73997548 ATATAATTATTATTCTTTT
1 ATAT-ATTTTTATT-TTTT
* *
73997567 GTA-ATTTTT-TGTTATT
1 ATATATTTTTAT-TTTTT
73997583 ATATATT
1 ATATATT
73997590 GTATATTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
16 6 0.18
17 13 0.39
18 8 0.24
19 6 0.18
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (17 bp):
ATATATTTTTATTTTTT
Found at i:74003505 original size:23 final size:23
Alignment explanation
Indices: 74003444--74003509 Score: 64
Period size: 23 Copynumber: 3.0 Consensus size: 23
74003434 CCTGATCAGT
* * *
74003444 ATACGATACATAAAATGTCT-AA
1 ATACGACACATAAAGTGCCTGAA
** *
74003466 A-ACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
74003488 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
74003510 TCGGTAAAGC
Statistics
Matches: 33, Mismatches: 9, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
21 12 0.36
22 4 0.12
23 17 0.52
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.18
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:74004589 original size:14 final size:14
Alignment explanation
Indices: 74004572--74004602 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
74004562 AGTAAAATAT
74004572 TTTCTGGAAAATGA
1 TTTCTGGAAAATGA
74004586 TTTCTGGAAAATGA
1 TTTCTGGAAAATGA
74004600 TTT
1 TTT
74004603 ACTTTTGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.42
Consensus pattern (14 bp):
TTTCTGGAAAATGA
Found at i:74004785 original size:16 final size:15
Alignment explanation
Indices: 74004764--74004805 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
74004754 AGTTTATTTT
74004764 ATATATATTTATATAA
1 ATATATATTTA-ATAA
74004780 ATATATATATTAATAA
1 ATATATAT-TTAATAA
*
74004796 ATTTATATTT
1 ATATATATTT
74004806 TAAAATTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 2 0.08
16 19 0.79
17 3 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
ATATATATTTAATAA
Found at i:74005062 original size:46 final size:46
Alignment explanation
Indices: 74005009--74005097 Score: 142
Period size: 46 Copynumber: 1.9 Consensus size: 46
74004999 AGAAATTAAT
* * *
74005009 AATATTATCCAAATGCATAATTAGTATTACACCGCATGATAACAAC
1 AATATTATCCAAATGCATAACTAATATTACACCACATGATAACAAC
*
74005055 AATATTATCCAAGTGCATAACTAATATTACACCACATGATAAC
1 AATATTATCCAAATGCATAACTAATATTACACCACATGATAAC
74005098 TAATATTACA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (46 bp):
AATATTATCCAAATGCATAACTAATATTACACCACATGATAACAAC
Found at i:74005083 original size:22 final size:22
Alignment explanation
Indices: 74005071--74005119 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
74005061 ATCCAAGTGC
74005071 ATAACTAATATTACACCACATG
1 ATAACTAATATTACACCACATG
74005093 ATAACTAATATTACACCACATG
1 ATAACTAATATTACACCACATG
74005115 ATAAC
1 ATAAC
74005120 AACAACATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.47, C:0.22, G:0.04, T:0.27
Consensus pattern (22 bp):
ATAACTAATATTACACCACATG
Found at i:74005117 original size:68 final size:68
Alignment explanation
Indices: 74005033--74005159 Score: 209
Period size: 68 Copynumber: 1.9 Consensus size: 68
74005023 GCATAATTAG
* * *
74005033 TATTACACCGCATGATAACAACAATATTATCCAAGTGCATAACTAATATTACACCACATGATAAC
1 TATTACACCACATGATAACAACAACATTATCCAAGTGCATAACAAATATTACACCACATGATAAC
74005098 TAA
66 TAA
* *
74005101 TATTACACCACATGATAACAACAACATTGTCCAAGTGTATAACAAATATTACACCACAT
1 TATTACACCACATGATAACAACAACATTATCCAAGTGCATAACAAATATTACACCACAT
74005160 TAAAAGTATC
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
68 54 1.00
ACGTcount: A:0.44, C:0.23, G:0.07, T:0.26
Consensus pattern (68 bp):
TATTACACCACATGATAACAACAACATTATCCAAGTGCATAACAAATATTACACCACATGATAAC
TAA
Found at i:74009189 original size:26 final size:26
Alignment explanation
Indices: 74009160--74009267 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
74009150 TGGTACAAAT
74009160 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
74009186 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74009212 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
74009238 TGATAATGGTTTAAGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74009264 TGAT
1 TGAT
74009268 GGGCATTTCA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:74010465 original size:8 final size:8
Alignment explanation
Indices: 74010450--74010483 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
74010440 CGGCACAAGT
74010450 CGAAAAGC
1 CGAAAAGC
*
74010458 CAAAAAGC
1 CGAAAAGC
*
74010466 TGAAAAGC
1 CGAAAAGC
74010474 CGAAAAGC
1 CGAAAAGC
74010482 CG
1 CG
74010484 GTATTTTGAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.50, C:0.24, G:0.24, T:0.03
Consensus pattern (8 bp):
CGAAAAGC
Found at i:74010913 original size:27 final size:27
Alignment explanation
Indices: 74010873--74011013 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
74010863 AGGAAGCGTC
* *
74010873 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
74010900 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
74010926 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
74010954 CTGGTGGCTCTGCGAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
74010981 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
74011008 CTGGTG
1 CTGGTG
74011014 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
26 11 0.11
27 84 0.85
28 4 0.04
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:74010954 original size:54 final size:54
Alignment explanation
Indices: 74010870--74011013 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
74010860 TGGAGGAAGC
*
74010870 GTCCTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
74010924 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCGACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
74010978 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
74011014 ACTTCGTCAC
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 6 0.07
54 79 0.93
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:74011024 original size:27 final size:26
Alignment explanation
Indices: 74010873--74011031 Score: 140
Period size: 27 Copynumber: 5.9 Consensus size: 26
74010863 AGGAAGCGTC
* * * *
74010873 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
* *
74010900 CTGGTGGCTCTGCCACATATATCTGTC
1 CTGGTGACTCTGCCACA-ATATCTGTT
* * *
74010927 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
* *
74010954 CTGGTGGCTCTGCGACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
*
74010981 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGT-T
*
74011008 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
74011032 GCACCCTCGC
Statistics
Matches: 114, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
26 10 0.09
27 102 0.89
28 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGTT
Found at i:74011025 original size:81 final size:80
Alignment explanation
Indices: 74010873--74011031 Score: 198
Period size: 81 Copynumber: 2.0 Consensus size: 80
74010863 AGGAAGCGTC
* *
74010873 CTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
74010938 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * * *
74010954 CTGGTGGCTCTGCGAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
*
74011017 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
74011032 GCACCCTCGC
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
80 17 0.25
81 51 0.75
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:74016772 original size:13 final size:13
Alignment explanation
Indices: 74016754--74016782 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
74016744 ATTCTTTTGT
74016754 TTTCAAAATTAAA
1 TTTCAAAATTAAA
74016767 TTTCAAAATTAAA
1 TTTCAAAATTAAA
74016780 TTT
1 TTT
74016783 TCCCCTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (13 bp):
TTTCAAAATTAAA
Found at i:74018882 original size:18 final size:17
Alignment explanation
Indices: 74018838--74018883 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
74018828 TACACCAAAT
*
74018838 TGGGCGTGTGGGCCACA
1 TGGGCGTGTGAGCCACA
*
74018855 TAGGCGTGTGAGCCTACA
1 TGGGCGTGTGAGCC-ACA
*
74018873 TGGGCATGTGA
1 TGGGCGTGTGA
74018884 AATTTGGGCC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.17, C:0.20, G:0.41, T:0.22
Consensus pattern (17 bp):
TGGGCGTGTGAGCCACA
Found at i:74019729 original size:26 final size:26
Alignment explanation
Indices: 74019709--74019763 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
74019699 CTGGACTGTT
74019709 TTTAAACTGATTGGCTTTGGATCGGG
1 TTTAAACTGATTGGCTTTGGATCGGG
74019735 TTTAAACTGATTGGCTTTGGATCGGG
1 TTTAAACTGATTGGCTTTGGATCGGG
74019761 TTT
1 TTT
74019764 TTGGTCTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.18, C:0.11, G:0.29, T:0.42
Consensus pattern (26 bp):
TTTAAACTGATTGGCTTTGGATCGGG
Found at i:74031267 original size:206 final size:206
Alignment explanation
Indices: 74030904--74033520 Score: 4302
Period size: 206 Copynumber: 12.7 Consensus size: 206
74030894 GCAGATCTGG
* *
74030904 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
* * * * * *
74030969 GATTTGGCTTTCACGTGCTTTCGATGAAGCAAATCTAAGATGATTTGGCATCTCTCTATTGTCAG
65 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * *
74031034 AGAATAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGATACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
74031099 CAGATGATTAGA
195 CAGATGATTAGA
* *
74031111 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATTGAAGACATATCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
74031176 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
*
74031241 GAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
74031306 AGATGATTAGA
196 AGATGATTAGA
* * * *
74031317 CTGAAGTAGATCCAAGATGGTTTGTTATCCTTGTACTTACAAGGAGCAAATTGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* * * * * *
74031382 ATTTGGCTTTCACGTGCTTTCGATGAAGTAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
** * * ** *
74031447 GAACAAATCGAAGTTTGGCGTCTTTATATTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTT
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
* *
74031512 AGATGTTTATA
196 AGATGATTAGA
* * * * * *
74031523 CTGAAGCAGATCCAAGATGATTTGGCATCCTTTTGTTTACAAGGAACAAATC-AAAATCATAGCT
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGA-CATAGCT
* * ** * * *
74031587 GATTTAGCTTTCATGTACTTACGCTGAAGCAAGTCTAAGATGATTTGACATCTCTGTATTGTTAG
65 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * * * * *
74031652 TGAATAAATCAAAGTTTAGCATCTCCATATTCGATGGAGGGCAGACATATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
74031717 CAGATGATTAGA
195 CAGATGATTAGA
* * *
74031729 CTGAAGTAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGAAAGCAAATCGAAGACATAGTT
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAG-GAGCAAATCGAAGACATAGCT
74031794 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * *
74031859 AGAAAAAATCGAAATTTGGTGACTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
74031924 CAGATGATTAGA
195 CAGATGATTAGA
74031936 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
74032001 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTATGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * *
74032066 GGACAAATCGAAGTTTGGCGTCTCCATATTCAACAGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
74032131 AGATGATTAGA
196 AGATGATTAGA
*
74032142 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTATGCTTACAAGGAAGCAAATCGAAGACATAGCT
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGG-AGCAAATCGAAGACATAGCT
* *
74032207 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTTTGTATTGTTAG
65 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAG
*
74032272 TGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
74032337 CAGATGATTAGA
195 CAGATGATTAGA
* *
74032349 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTATGCTTACAAGGAGCAAATCGAAGACATAACTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
74032414 ATATGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * *
74032479 GAACAAATCGAAGTTTGGCGTTTTCATATTCGACAGAGGGTAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
74032544 AGATGATTAGA
196 AGATGATTAGA
74032555 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
74032620 ATTTGGTTTTCGCGTGCTTACGCTGAAGTAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * *
74032685 GAAAAAATTGAAGTTTGGTGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
74032750 AGATGATTAGA
196 AGATGATTAGA
74032761 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
74032826 ATTTGGTTTCCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * * * *
74032891 GAACAAATCAAATTTTGGCGTTTCCATATTCTACGGAGGGCAGAAACATAGTAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
74032956 AGATGATTAGA
196 AGATGATTAGA
74032967 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
*
74033032 ATTTGGCTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
74033097 GAACAAATCGAAGTTTGGCGTCTCCATATTCTATGGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
74033162 AGATGATTAGA
196 AGATGATTAGA
* *
74033173 ATGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATTGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* *
74033238 ATTTGGTTTTCGCGTGCTTATGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTTTCAGA
66 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
74033303 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
74033368 AGATGATTAGA
196 AGATGATTAGA
*
74033379 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGAAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
* * *
74033444 ATTTGGTTTGTC-TGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
66 ATTTGGTTT-TCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAG
74033508 AGAACAAATCGAA
130 AGAACAAATCGAA
74033521 TAAGCAGATT
Statistics
Matches: 2237, Mismatches: 168, Indels: 11
0.93 0.07 0.00
Matches are distributed among these distances:
205 3 0.00
206 1843 0.82
207 388 0.17
208 3 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
AGATGATTAGA
Found at i:74035744 original size:22 final size:22
Alignment explanation
Indices: 74035719--74035761 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
74035709 CTTTCTTATA
*
74035719 TTTTTATATATTATTTATTTTG
1 TTTTTATATACTATTTATTTTG
*
74035741 TTTTTTTATACTATTTATTTT
1 TTTTTATATACTATTTATTTT
74035762 ACCATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTTATATACTATTTATTTTG
Found at i:74040154 original size:33 final size:32
Alignment explanation
Indices: 74040081--74040158 Score: 84
Period size: 33 Copynumber: 2.4 Consensus size: 32
74040071 CAGTGTTTAT
* * * *
74040081 ATGTAAGATCATAGTTGGGGTATGGCATTCTG
1 ATGTAAGACCATAATTGGGGTATGGCACTATG
* *
74040113 ATGATAAGACCTTAATTGGGTTATGGCACTATGG
1 ATG-TAAGACCATAATTGGGGTATGGCACTAT-G
74040147 ATGTAAGACCAT
1 ATGTAAGACCAT
74040159 GGTTGGACCA
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
32 3 0.08
33 30 0.81
34 4 0.11
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.32
Consensus pattern (32 bp):
ATGTAAGACCATAATTGGGGTATGGCACTATG
Found at i:74044161 original size:56 final size:56
Alignment explanation
Indices: 74044075--74044238 Score: 213
Period size: 56 Copynumber: 2.9 Consensus size: 56
74044065 ATGGCATCGA
* *
74044075 TATATGTGTGTGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTTTGT
1 TATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCTGT
* ** *
74044131 TATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGTGTCGATATGTGACTCTGT
1 TATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCTGT
* *** *
74044187 TATATGTGTGCGAGTAAGACC-CTGTCTGGGACAGTGGCATCGATATGTGATT
1 TATATGTGTGCGAGTAAGACCAC-GTTTAATACATTGGCATCGATATGTGATT
74044239 ACAAGTAAGA
Statistics
Matches: 92, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
55 1 0.01
56 91 0.99
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.35
Consensus pattern (56 bp):
TATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCTGT
Found at i:74046376 original size:40 final size:40
Alignment explanation
Indices: 74046283--74046499 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
74046273 AAGCCAAGTA
* * *
74046283 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
74046321 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
74046361 CCTTTGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
74046401 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
74046441 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
74046481 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
74046500 TTATCATTCG
Statistics
Matches: 158, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
38 12 0.08
39 17 0.11
40 129 0.82
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:74048775 original size:35 final size:37
Alignment explanation
Indices: 74048704--74048801 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
74048694 ATAATCTTCA
74048704 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
74048742 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
74048777 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
74048802 ATTTGTAATC
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:74048801 original size:17 final size:19
Alignment explanation
Indices: 74048704--74048794 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
74048694 ATAATCTTCA
74048704 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74048723 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74048742 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74048759 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74048777 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
74048795 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:74048826 original size:21 final size:22
Alignment explanation
Indices: 74048786--74048829 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
74048776 TATGATATGC
*
74048786 AATCTTAGAAGATATGATTTGT
1 AATCTTAGAAGATATAATTTGT
*
74048808 AATCTTAG-AGATTTAATTTGT
1 AATCTTAGAAGATATAATTTGT
74048829 A
1 A
74048830 GATACCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43
Consensus pattern (22 bp):
AATCTTAGAAGATATAATTTGT
Found at i:74060901 original size:78 final size:78
Alignment explanation
Indices: 74060772--74061067 Score: 450
Period size: 78 Copynumber: 3.8 Consensus size: 78
74060762 TGAAGAAACA
* * * *
74060772 GATTTGGTATCTCTATATTCGACGGAGCGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
74060837 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * *
74060850 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGACACAGTAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
74060915 ACAGATCCAAGAT
66 GCAGATCCAAGAT
* *
74060928 GATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
74060992 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
74061006 GATTTGGCATCTCTGTATTAGACGGGGAGCTGATCAAAGACATAGCAGATCTGACCTTCATT
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATT
74061068 TGTTTACATC
Statistics
Matches: 195, Mismatches: 21, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
77 1 0.01
78 193 0.99
79 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:74061163 original size:45 final size:45
Alignment explanation
Indices: 74061080--74061279 Score: 224
Period size: 45 Copynumber: 4.5 Consensus size: 45
74061070 TTTACATCGA
* * * * **
74061080 AGCAGATCCAAGATGACATATTTGGCATCTCTGTATTAGACAAGG
1 AGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
*
74061125 AGCAAATCGGAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * **
74061170 AGCAAAT-TAA-AAAAGCAGATTTGGCGCCTCTGTATTAGACGGGG
1 AGCAAATCGAAGATAA-CAGATTTGGCATCTCTGTATTAGACGGGG
* * *
74061214 AGCAGATCGAAGATAACAGATTTGGCGTCTCTATATTAGACGGGG
1 AGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
74061259 AGCAGATCAAAGATAGCAGAT
1 AGCAAATCGAAGATAACAGAT
74061280 ATCGCCTTCC
Statistics
Matches: 133, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
43 3 0.02
44 34 0.26
45 93 0.70
46 3 0.02
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.23
Consensus pattern (45 bp):
AGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:74061251 original size:89 final size:89
Alignment explanation
Indices: 74061099--74061262 Score: 256
Period size: 89 Copynumber: 1.8 Consensus size: 89
74061089 AAGATGACAT
* * *
74061099 ATTTGGCATCTCTGTATTAGACAAGGAGCAAATCGGAGATAACAGATTTGGCATCTCTGTATTAG
1 ATTTGGCACCTCTGTATTAGACAAGGAGCAAATCGAAGATAACAGATTTGGCATCTCTATATTAG
74061164 ACGGGGAGCAAATTAAAAAAGCAG
66 ACGGGGAGCAAATTAAAAAAGCAG
* ** * *
74061188 ATTTGGCGCCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTATATTAG
1 ATTTGGCACCTCTGTATTAGACAAGGAGCAAATCGAAGATAACAGATTTGGCATCTCTATATTAG
74061253 ACGGGGAGCA
66 ACGGGGAGCA
74061263 GATCAAAGAT
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
89 67 1.00
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (89 bp):
ATTTGGCACCTCTGTATTAGACAAGGAGCAAATCGAAGATAACAGATTTGGCATCTCTATATTAG
ACGGGGAGCAAATTAAAAAAGCAG
Found at i:74061652 original size:19 final size:19
Alignment explanation
Indices: 74061628--74061699 Score: 105
Period size: 19 Copynumber: 3.9 Consensus size: 19
74061618 ATAATCTTCA
74061628 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
74061647 ATGATA--CAATCTTAAAT
1 ATGATATGCAATCTTAGAT
74061664 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
74061682 ATAATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
74061700 AGATATGATT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
17 15 0.32
18 14 0.30
19 18 0.38
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:74061656 original size:17 final size:17
Alignment explanation
Indices: 74061636--74061699 Score: 74
Period size: 17 Copynumber: 3.6 Consensus size: 17
74061626 CAATGATATG
74061636 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
* *
74061653 CAATCTTAAATATGATTG
1 CAATCTTAGATATGA-TA
*
74061671 CAATCTTAGATATAATA
1 CAATCTTAGATATGATA
74061688 TGCAATCTTAGA
1 --CAATCTTAGA
74061700 AGATATGATT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
17 15 0.38
18 14 0.36
19 10 0.26
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:74061674 original size:35 final size:37
Alignment explanation
Indices: 74061628--74061697 Score: 108
Period size: 35 Copynumber: 1.9 Consensus size: 37
74061618 ATAATCTTCA
*
74061628 ATGATATGCAATCTTAGATATGATA-CAATCTTAAAT
1 ATGATATGCAATCTTAGATATAATAGCAATCTTAAAT
74061664 ATGAT-TGCAATCTTAGATATAATATGCAATCTTA
1 ATGATATGCAATCTTAGATATAATA-GCAATCTTA
74061698 GAAGATATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
35 18 0.58
36 5 0.16
37 8 0.26
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.37
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATAATAGCAATCTTAAAT
Found at i:74066495 original size:28 final size:28
Alignment explanation
Indices: 74066462--74066596 Score: 164
Period size: 28 Copynumber: 4.8 Consensus size: 28
74066452 TACATACATG
*
74066462 CATATGGCCCACTAGGCCCAATCTCATT
1 CATATGGCCCATTAGGCCCAATCTCATT
* *
74066490 TATATGGCCCATTCGGCCCAAT-TCACGTT
1 CATATGGCCCATTAGGCCCAATCTCA--TT
* *
74066519 CATATGGCCCATCAGGCCCAATTCACATT
1 CATATGGCCCATTAGGCCCAA-TCTCATT
74066548 CATATGGCCCATTAGGCCCAATCTCATT
1 CATATGGCCCATTAGGCCCAATCTCATT
* **
74066576 TATATGGCCCATCCGGCCCAA
1 CATATGGCCCATTAGGCCCAA
74066597 ATCACATTAT
Statistics
Matches: 91, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
27 3 0.03
28 43 0.47
29 42 0.46
30 1 0.01
31 2 0.02
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.26
Consensus pattern (28 bp):
CATATGGCCCATTAGGCCCAATCTCATT
Found at i:74066528 original size:29 final size:28
Alignment explanation
Indices: 74066462--74066601 Score: 151
Period size: 29 Copynumber: 4.9 Consensus size: 28
74066452 TACATACATG
* *
74066462 CATATGGCCCACTAGGCCCAATCTCA-TT
1 CATATGGCCCATTCGGCCCAAT-TCACTT
*
74066490 TATATGGCCCATTCGGCCCAATTCACGTT
1 CATATGGCCCATTCGGCCCAATTCAC-TT
74066519 CATATGGCCCA-TCAGGCCCAATTCACATT
1 CATATGGCCCATTC-GGCCCAATTCAC-TT
*
74066548 CATATGGCCCATTAGGCCCAATCTCA-TT
1 CATATGGCCCATTCGGCCCAAT-TCACTT
* * *
74066576 TATATGGCCCATCCGGCCCAAATCAC
1 CATATGGCCCATTCGGCCCAATTCAC
74066602 ATTATATTCA
Statistics
Matches: 96, Mismatches: 10, Indels: 12
0.81 0.08 0.10
Matches are distributed among these distances:
27 6 0.06
28 41 0.43
29 45 0.47
30 4 0.04
ACGTcount: A:0.25, C:0.34, G:0.15, T:0.26
Consensus pattern (28 bp):
CATATGGCCCATTCGGCCCAATTCACTT
Found at i:74066581 original size:57 final size:55
Alignment explanation
Indices: 74066462--74066608 Score: 181
Period size: 57 Copynumber: 2.6 Consensus size: 55
74066452 TACATACATG
* *
74066462 CATATGGCCCA-CTAGGCCCAATCTCATTTATATGGCCCATTCGGCCCAATTCACGTT
1 CATATGGCCCATC-AGGCCCAATCACA-TTATATGGCCCATTAGGCCCAATTCAC-TT
74066519 CATATGGCCCATCAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATCTCA-TT
1 CATATGGCCCATCAGGCCCAA-TCACATT-ATATGGCCCATTAGGCCCAAT-TCACTT
* *
74066576 TATATGGCCCATCCGGCCCAAATCACATTATAT
1 CATATGGCCCATCAGGCCC-AATCACATTATAT
74066609 TCATGCTCAC
Statistics
Matches: 81, Mismatches: 4, Indels: 11
0.84 0.04 0.11
Matches are distributed among these distances:
56 4 0.05
57 47 0.58
58 27 0.33
59 3 0.04
ACGTcount: A:0.26, C:0.33, G:0.14, T:0.27
Consensus pattern (55 bp):
CATATGGCCCATCAGGCCCAATCACATTATATGGCCCATTAGGCCCAATTCACTT
Found at i:74066700 original size:18 final size:18
Alignment explanation
Indices: 74066677--74066712 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
74066667 TGGGCCCAAC
74066677 AGCCCA-TCAGACCCATTT
1 AGCCCATTCA-ACCCATTT
74066695 AGCCCATTCAACCCATTT
1 AGCCCATTCAACCCATTT
74066713 GGTCTATTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.82
19 3 0.18
ACGTcount: A:0.28, C:0.39, G:0.08, T:0.25
Consensus pattern (18 bp):
AGCCCATTCAACCCATTT
Found at i:74066844 original size:16 final size:16
Alignment explanation
Indices: 74066819--74066877 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
74066809 GTAGCCAAAC
74066819 TTTCGACTTTTCGGCA
1 TTTCGACTTTTCGGCA
* *
74066835 TTTTGACTTTTCAGCA
1 TTTCGACTTTTCGGCA
* *
74066851 TTTCAACTTTTCGACA
1 TTTCGACTTTTCGGCA
*
74066867 TTTCGGCTTTT
1 TTTCGACTTTT
74066878 GCCGATCTAC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.15, C:0.22, G:0.14, T:0.49
Consensus pattern (16 bp):
TTTCGACTTTTCGGCA
Found at i:74069959 original size:593 final size:593
Alignment explanation
Indices: 74067198--74071950 Score: 8124
Period size: 592 Copynumber: 8.0 Consensus size: 593
74067188 GAGGAATACT
* * * *
74067198 TACCAATACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATCCAAGATCTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGACATCTGATACTA
*
74067263 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCGGTATTAACAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAGC
* *
74067328 TGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTTGACTTTTCAGC
131 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAGC
* *
74067393 TTTTAAACTAATATGGTGTATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGGCAGAAGAATGA
196 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATT--A-AAG-A----AGAAG---GA
* * *
74067458 ATCGGCTAACCCAAAGGATAAATCAAAAGAGATCTGACGAGAGAAAGAATGGCAAAAGAATCAGC
250 ATCGACTAACCCAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGC
*
74067523 TAGCAAAGATGGAAAAGCCAATCGACACTATATAAAAATGAAGAATTTGGCATTAGCCTAGGATC
315 TAGCAAAGATGGAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATC
* * *
74067588 CCAAACTCAGCACATATTTACAGCCTATAGCCAAATTACCTGACCCTCAACTCCCAATTCAGCTC
380 CCAAACTCAGCACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTC
* ** * *
74067653 CGTCACTTCCTTCTTCTCATCTCCTCATTTTTCTCCCTGATAACTCCCCAATCTATTCCCTAAAT
445 CATCACTTCCCCCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAAT
74067718 TTTCTCTTCTGAACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAA
510 TTTCTCTTCTGAACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAA
74067783 AATTAAACTCCTAAAAAAA
575 AATTAAACTCCTAAAAAAA
* *
74067802 TACCAAAACTGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGATATCTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGACATCTGATACTA
74067867 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAGC
* *
74067932 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATTGGCCCAAGGGAGATTCGACTTTTTAGC
131 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAGC
74067997 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGACTAACC
196 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGACTAACC
*
74068062 CAAAGGGTAAATCAAAATAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
261 CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
*
74068127 GAAAAGCCAATCGACATTATAAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAG
326 GAAAAGCCAATCGACACTAT-AAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAG
*
74068192 CACATATTTAGAGCCTGTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAG--CCATCACTTCC
390 CACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCC
* *
74068255 CCCTTCTCATCTCTTCGTTTTTCTCCCTTATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCT
455 CCCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCT
*
74068320 GAACACTCCCCTTAGAGTCCATCTTCACACCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTC
520 GAACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTC
74068385 CTAAAAAAA
585 CTAAAAAAA
*
74068394 TACCAAAACCGAAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGACATCTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGACATCTGATACTA
* *
74068459 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAAGGGAGTAATTAGTATTAACAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAGC
*
74068524 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATTGGCCCAAGGGAGATTCGACTTTTCAGC
131 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAGC
*
74068589 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCAACTAACC
196 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGACTAACC
* * * *
74068654 CAAAGGGTAAATCAAAAGAGATCTGAAGAGAGAAAGAATGGAAAAAGAATCAGGTAGCAAAAATG
261 CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
*
74068719 GAAAAGCCAATCGACACTAT-AAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTTAGC
326 GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAGC
* *
74068783 ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTACCAATTCAACTCCATCACTTCCC
391 ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCCC
*
74068848 CCTTCTCATCTCCTTGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
456 CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
74068913 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
521 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
*
74068978 TAAAAACA
586 TAAAAAAA
* * *
74068986 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTGAAATTAGACATTTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGACATCTGATACTA
* * *
74069051 ATTCCCTACCAAATTTGATT-AAAAAGAGTGAGGGAGGGAAGTAATCGGTATTAACAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAGC
74069115 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAGC
131 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAGC
74069180 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGACTAACC
196 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGACTAACC
* *
74069245 CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGAAAAAGAATCAGCTAGTAAAGATG
261 CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
*
74069310 GAAAAGCCAATCGACACTAT-AAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACACAGC
326 GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAGC
* * *
74069374 ACATATTTAGAGCCTCTAGCCAACTTGCCTAACCCTCAACTCCCAATTCAGTTCCATCACTTCCC
391 ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCCC
* * *
74069439 TCTTCTCATCTCCTCGTTTTCCTCCCTGATAACTCCTCAATCTATTTCCTAAATTTTCTCTTCTG
456 CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
*
74069504 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCTAAAATTAAACTCC
521 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
74069569 TAAGAAAAA
586 TAA-AAAAA
* * * * *
74069578 TACCAAAACCGTAAAACACCTAAGGAGCAATTCGACAGATAGCTAAAA-TCTGAGATCTTATGCT
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTC-GACATCTGATACT
* * *
74069642 AATTCCCTACCAAAGTTGATTAAAAAAGAGCGAGGGAGGGCAGTAATCAGCATTAACAATACTAG
65 AATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAG
* *
74069707 CCGAAAAAGAGATAAGGTACTTACCCCAAAAAAGTAATCGGCCCAAGGGAGATTCTACTTTTCAG
130 CCGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAG
*
74069772 CTTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAGTTAAAGAAG-AGGAATCGACTAAC
195 CTTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGACTAAC
*
74069836 CCAAAGGGTAAATCAAAAGAGATCTGAAGAGAGAAAGAATGGCAAAAGAATCAG-TAAGCAAAGA
260 CCAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCT-AGCAAAGA
* *
74069900 TGGAAAAGCCAATCGACACTATAAAAAAAAGAAGAATTTGGCATTAGCCTAGGATCCCAAACTTA
324 TGGAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCA
*
74069965 GTACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTC
389 GCACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTC
74070030 CCCCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTC
454 CCCCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTC
*
74070095 TAAACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACT
519 TGAACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACT
74070160 CCTAAAAAAA
584 CCTAAAAAAA
* * * ** *
74070170 TACCAAAACCACAAAACACCTAAGGAGCAATTCAATAGAGAGCTAAAATTTTAGATCTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGACATCTGATACTA
* * *
74070235 ATACCCTACCAAAGTTGATTAAAAAAGAGTGAGAGAGGGCAGTAATCAGTATTAACAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAGC
74070300 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAGC
131 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAGC
* *
74070365 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTGAAGAAGAAGGAATCGGCTAACC
196 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGACTAACC
*
74070430 CAAAGGGTAAATCAAAATAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
261 CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
* *
74070495 GAAAAGCCAATAGACACTAT-AAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTTAGC
326 GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAGC
*
74070559 ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTACCAATTCAGCTCCATCACTTCCC
391 ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCCC
*
74070624 CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTTCCCAATCTATTTCCTAAATTTTCTCTTCTG
456 CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
74070689 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
521 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
74070754 TAAAAAAA
586 TAAAAAAA
*
74070762 TACCAAAACCGTAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGACATCTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGACATCTGATACTA
* * *
74070827 ATTCCCAACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCGGTATTAATAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAGC
* *
74070892 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGACCCAAGGGAG-TTTGACTTTTCAGC
131 CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAGC
* *
74070956 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATTGGCTAACC
196 TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGACTAACC
* * * *
74071021 CAAAGAGTAAATCAAAAGAGATTTGAAGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAAATG
261 CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
74071086 GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAGC
326 GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAGC
*
74071151 ACATATTTAGAGCCTTTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCCC
391 ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCCC
74071216 CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
456 CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
*
74071281 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCA
521 AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
74071346 TAAAAAAA
586 TAAAAAAA
* * *
74071354 TACCAAAACCGTAAAACACCTAAGGAGCAATTCGATAGAGAGCTAAAATTCGATATCTGATACTA
1 TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGACATCTGATACTA
* **
74071419 ATTCCTTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATTGGTATTAACAATACTAGC
66 ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAGC
* **
74071484 CGAAAAAAGAGATAAGGTACTTACCACAAAAGAGTAATCGAACCAAGGGAGATTCGACTTTTCAG
131 CG-AAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAG
*
74071549 CTTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGGCTAAC
195 CTTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGACTAAC
*
74071614 CCAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCCGCTAGCAAAGAT
260 CCAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGAT
* * *
74071679 GGAAAAGCCAATCGACACTA-AAAAAAATAAAGAATTTGGAATTAGCCTAGGACCCCAAACTCAG
325 GGAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAG
* *
74071743 CACATATTTAGAGCCTATAGCCAAATTGCCTGACCCTCAATTCCCAATTCAGCTCCATCACTTCC
390 CACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCC
* * *
74071808 CCCTTCTCATCTTCTCATTGTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCT
455 CCCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCT
*
74071873 GAACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATCAAACTC
520 GAACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTC
*
74071938 CTTAGAAAAA
585 C-TAAAAAAA
74071948 TAC
1 TAC
74071951 TAAGCTAGGA
Statistics
Matches: 3944, Mismatches: 190, Indels: 40
0.94 0.05 0.01
Matches are distributed among these distances:
590 91 0.02
591 636 0.16
592 1878 0.48
593 845 0.21
594 259 0.07
596 5 0.00
600 1 0.00
601 3 0.00
602 1 0.00
604 225 0.06
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (593 bp):
TACCAAAACCGCAAAACACCTAAGGAGCAATTCGACAGAGAGCTAAAATTCGACATCTGATACTA
ATTCCCTACCAAAGTTGATTAAAAAAGAGTGAGGGAGGGGAGTAATCAGTATTAACAATACTAGC
CGAAAAAGAGATAAGGTACTTACCCCAAAAGAGTAATCGGCCCAAGGGAGATTCGACTTTTCAGC
TTTCAAACTAATATGGTGAATAAGGTTTATTTGGCACAAATTAAAGAAGAAGGAATCGACTAACC
CAAAGGGTAAATCAAAAGAGATCTGAGGAGAGAAAGAATGGCAAAAGAATCAGCTAGCAAAGATG
GAAAAGCCAATCGACACTATAAAAAAATGAAGAATTTGGCATTAGCCTAGGATCCCAAACTCAGC
ACATATTTAGAGCCTCTAGCCAAATTGCCTGACCCTCAACTCCCAATTCAGCTCCATCACTTCCC
CCTTCTCATCTCCTCGTTTTTCTCCCTGATAACTCCCCAATCTATTTCCTAAATTTTCTCTTCTG
AACACTCCCCTTAGAGTCCATCTTCACGCCACTTCCAACCTTCTAGAAGGCCAAAATTAAACTCC
TAAAAAAA
Found at i:74079883 original size:19 final size:19
Alignment explanation
Indices: 74079859--74079896 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
74079849 AACCATAACA
74079859 ACTCCATCGATATAACTCC
1 ACTCCATCGATATAACTCC
74079878 ACTCCATCGATATAACTCC
1 ACTCCATCGATATAACTCC
74079897 CTAATGGTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.37, G:0.05, T:0.26
Consensus pattern (19 bp):
ACTCCATCGATATAACTCC
Found at i:74084043 original size:19 final size:19
Alignment explanation
Indices: 74084019--74084116 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
74084009 AATCTTTAAG
74084019 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
74084038 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
74084057 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
74084074 GTTATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
74084093 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
74084114 GAT
1 GAT
74084117 CTTGTAATCT
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 15 0.21
19 47 0.66
21 9 0.13
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:74084066 original size:36 final size:37
Alignment explanation
Indices: 74084019--74084116 Score: 135
Period size: 36 Copynumber: 2.6 Consensus size: 37
74084009 AATCTTTAAG
74084019 GATATGCAATCTTAGATATGATATGCAATATTAGATAT
1 GATA-GCAATCTTAGATATGATATGCAATATTAGATAT
* *
74084057 GATA-CAATCTTAGATATGTTATGCAATCTTAGATAT
1 GATAGCAATCTTAGATATGATATGCAATATTAGATAT
74084093 GATATGCAATCTTGAAGATATGAT
1 GATA-GCAATCTT--AGATATGAT
74084117 CTTGTAATCT
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
36 34 0.64
38 11 0.21
40 8 0.15
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (37 bp):
GATAGCAATCTTAGATATGATATGCAATATTAGATAT
Found at i:74088924 original size:16 final size:15
Alignment explanation
Indices: 74088903--74088961 Score: 75
Period size: 16 Copynumber: 3.9 Consensus size: 15
74088893 CTATTTCAAA
74088903 AAAAAAGGAAAAAGAG
1 AAAAAAGGAAAAA-AG
*
74088919 AAAAAAAG-AAAAAG
1 AAAAAAGGAAAAAAG
74088933 AAAAAAGAGAAAAAAG
1 AAAAAAG-GAAAAAAG
*
74088949 GAAAAAGGAAAAA
1 AAAAAAGGAAAAA
74088962 TGGAGAGGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
14 8 0.21
15 11 0.29
16 19 0.50
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (15 bp):
AAAAAAGGAAAAAAG
Found at i:74088937 original size:23 final size:23
Alignment explanation
Indices: 74088900--74088961 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
74088890 CTTCTATTTC
74088900 AAAA-AAAAAGGAAAAAGAGAAA
1 AAAAGAAAAAGGAAAAAGAGAAA
*
74088922 AAAAGAAAAAGAAAAAAGAGAAA
1 AAAAGAAAAAGGAAAAAGAGAAA
*
74088945 AAAGGAAAAAGGAAAAA
1 AAAAGAAAAAGGAAAAA
74088962 TGGAGAGGCC
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
22 4 0.11
23 32 0.89
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (23 bp):
AAAAGAAAAAGGAAAAAGAGAAA
Found at i:74088953 original size:6 final size:7
Alignment explanation
Indices: 74088904--74088961 Score: 62
Period size: 7 Copynumber: 7.7 Consensus size: 7
74088894 TATTTCAAAA
74088904 AAAAAGG
1 AAAAAGG
74088911 AAAAAGAG
1 AAAAAG-G
*
74088919 AAAAAAAG
1 -AAAAAGG
*
74088927 AAAAAGA
1 AAAAAGG
74088934 AAAAAGAG
1 AAAAAG-G
74088942 AAAAAAGG
1 -AAAAAGG
74088950 AAAAAGG
1 AAAAAGG
74088957 AAAAA
1 AAAAA
74088962 TGGAGAGGCC
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
7 29 0.67
8 3 0.07
9 11 0.26
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (7 bp):
AAAAAGG
Found at i:74090052 original size:84 final size:84
Alignment explanation
Indices: 74089911--74090520 Score: 900
Period size: 84 Copynumber: 7.3 Consensus size: 84
74089901 AAATTCAGTA
*
74089911 CCTTAATCCCCTAAGCAGTTGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
74089976 GGAGCAAATCGAAGACTCG
66 GGAGCAGATCGAAGACTCG
* *
74089995 CCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAATAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
74090060 GGAGCAGATCGAAAACTCG
66 GGAGCAGATCGAAGACTCG
74090079 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
74090144 GGAGCAGATCGAAGACTCG
66 GGAGCAGATCGAAGACTCG
*
74090163 CCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
* *
74090228 AGAGCAGATCGAAGACTCA
66 GGAGCAGATCGAAGACTCG
* * * *
74090247 TCTTAATCCCCTAAGTAGTAGGGTAACAGG-----TTCG-AGATCTTATCTCCCTAAGCAGTAGC
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
74090306 GGAGCAGATCGACGACGACTCG
66 GGAGCAGATCGA--A-GACTCG
*
74090328 CCTTAATCCCCTAAGCAGTAGGGTAACGGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
74090393 GGAGCAGATCGAAGAC-CTG
66 GGAGCAGATCGAAGACTC-G
* *
74090412 CCTTAGTCCCCT-AGACAGTAGGCTAACAGGTTAAATTTGCAGATCTTA--TCCCTAAGCAGTAG
1 CCTTAATCCCCTAAG-CAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* * *
74090474 CGGAGCAGATCGACGACGATGCA
65 TGGAGCAGATCGAAGAC--T-CG
74090497 CCTTAA-CCCCTTAAGCAGTAGGGT
1 CCTTAATCCCC-TAAGCAGTAGGGT
74090521 CCAAGATGAT
Statistics
Matches: 478, Mismatches: 31, Indels: 33
0.88 0.06 0.06
Matches are distributed among these distances:
78 35 0.07
79 3 0.01
80 1 0.00
81 32 0.07
82 29 0.06
83 3 0.01
84 318 0.67
85 15 0.03
86 6 0.01
87 36 0.08
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (84 bp):
CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
GGAGCAGATCGAAGACTCG
Found at i:74090441 original size:249 final size:248
Alignment explanation
Indices: 74089911--74090520 Score: 910
Period size: 249 Copynumber: 2.4 Consensus size: 248
74089901 AAATTCAGTA
*
74089911 CCTTAATCCCCTAAGCAGTTGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
* * *
74089976 GGAGCAAATCGAAGACTCGCCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCT
66 GGAGCAGATCGAAGACTCACCTTAATCCCCTAAGTAGTAGGGTAACAGG----ATTCGCAGATCT
*
74090041 TATCTCCCTAAGCAATAGTGGAGCAGATCGAAAACTCGCCTTAATCCCCTAAGCAGTAGGGTAAC
127 TATCTCCCTAAGCAATAGCGGAGCAGATCGAAAACTCGCCTTAATCCCCTAAGCAGTAGGGTAAC
74090106 AGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCG
192 AGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCG
*
74090163 CCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
* *
74090228 AGAGCAGATCGAAGACTCATCTTAATCCCCTAAGTAGTAGGGTAACAGG-TTCG-AGATCTTATC
66 GGAGCAGATCGAAGACTCACCTTAATCCCCTAAGTAGTAGGGTAACAGGATTCGCAGATCTTATC
* * *
74090291 TCCCTAAGCAGTAGCGGAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACG
131 TCCCTAAGCAATAGCGGAGCAGATCGA--A-AACTCGCCTTAATCCCCTAAGCAGTAGGGTAACA
74090356 GGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC-CTG
193 GGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTC-G
* *
74090412 CCTTAGTCCCCT-AGACAGTAGGCTAACAGGTTAAATTTGCAGATCTTA--TCCCTAAGCAGTAG
1 CCTTAATCCCCTAAG-CAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* * *
74090474 CGGAGCAGATCGACGACGATGCACCTTAA-CCCCTTAAGCAGTAGGGT
65 TGGAGCAGATCGAAGAC--T-CACCTTAATCCCC-TAAGTAGTAGGGT
74090521 CCAAGATGAT
Statistics
Matches: 330, Mismatches: 19, Indels: 20
0.89 0.05 0.05
Matches are distributed among these distances:
246 35 0.11
247 31 0.09
248 4 0.01
249 133 0.40
250 19 0.06
252 108 0.33
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (248 bp):
CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
GGAGCAGATCGAAGACTCACCTTAATCCCCTAAGTAGTAGGGTAACAGGATTCGCAGATCTTATC
TCCCTAAGCAATAGCGGAGCAGATCGAAAACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGT
TAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCG
Found at i:74091283 original size:19 final size:19
Alignment explanation
Indices: 74091259--74091337 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
74091249 AATCTTTAAG
74091259 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
74091278 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
74091297 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
74091314 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
74091335 GAT
1 GAT
74091338 CTTGTAATCT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
21 9 0.17
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:74091306 original size:36 final size:37
Alignment explanation
Indices: 74091265--74091337 Score: 121
Period size: 36 Copynumber: 2.0 Consensus size: 37
74091255 TAAGGATATG
74091265 CAATCTTAGATATGATATGCAATATT-AGATATGATA
1 CAATCTTAGATATGATATGCAATATTAAGATATGATA
*
74091301 CAATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 CAATCTTAGATATGATATGCAATATT-AAGATATGAT
74091338 CTTGTAATCT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 25 0.74
38 9 0.26
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.36
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATATTAAGATATGATA
Found at i:74092796 original size:17 final size:18
Alignment explanation
Indices: 74092782--74092850 Score: 106
Period size: 17 Copynumber: 3.8 Consensus size: 18
74092772 ATAATCTTCA
74092782 ATGATATGCAATCTTGAT
1 ATGATATGCAATCTTGAT
74092800 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTT-GAT
74092819 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTT-GAT
74092836 ATGATATGCAATCTT
1 ATGATATGCAATCTT
74092851 AGAAGATATG
Statistics
Matches: 48, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
17 17 0.35
18 15 0.31
19 16 0.33
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (18 bp):
ATGATATGCAATCTTGAT
Done.