Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 224 of 344
Found at i:74340668 original size:156 final size:156
Alignment explanation
Indices: 74340365--74340679 Score: 576
Period size: 156 Copynumber: 2.0 Consensus size: 156
74340355 TGTTTTAGGG
*
74340365 GGAAATTTTCAGCAAATCGCGCCATTAGGGAGCGTTTTTGTCATGTTAGCATAAAACGCGCTAAC
1 GGAAATTTTCAGCAAATCGCGCCATTAGGGAGCGTTTTTGCCATGTTAGCATAAAACGCGCTAAC
*
74340430 GTAGACTCGCTTTGCTAATGTGGCGAAAACGCTCCCTAAGGGCGCACTTTGCTCAGTGTTTTTAA
66 GTAGACTCGCTTTGCTAATGTGGCAAAAACGCTCCCTAAGGGCGCACTTTGCTCAGTGTTTTTAA
74340495 CCCAACGGCTAATTTTTTTGACCGTT
131 CCCAACGGCTAATTTTTTTGACCGTT
*
74340521 GGAAATTTTCAGCAAATCGCGCCATTAGGGAGCGTTTTTGCCATGTTAGCATAAAATGCGCTAAC
1 GGAAATTTTCAGCAAATCGCGCCATTAGGGAGCGTTTTTGCCATGTTAGCATAAAACGCGCTAAC
* *
74340586 GTAGACTCGCTTTGCTGATGTGGCAAAAACGCTCCCCTAAGGGCGCGCTTTGCTCAGTGTTTTTA
66 GTAGACTCGCTTTGCTAATGTGGCAAAAACGCT-CCCTAAGGGCGCACTTTGCTCAGTGTTTTTA
74340651 ACCCAACGGCTAATTTTTTTGACCGTT
130 ACCCAACGGCTAATTTTTTTGACCGTT
74340678 GG
1 GG
74340680 GGGGTCCAAT
Statistics
Matches: 153, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
156 94 0.61
157 59 0.39
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (156 bp):
GGAAATTTTCAGCAAATCGCGCCATTAGGGAGCGTTTTTGCCATGTTAGCATAAAACGCGCTAAC
GTAGACTCGCTTTGCTAATGTGGCAAAAACGCTCCCTAAGGGCGCACTTTGCTCAGTGTTTTTAA
CCCAACGGCTAATTTTTTTGACCGTT
Found at i:74340782 original size:21 final size:21
Alignment explanation
Indices: 74340758--74340798 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
74340748 AACAAAAAAA
*
74340758 CTCTAAAATTTCTCCTTAAAG
1 CTCTAAAATTTCTCATTAAAG
* *
74340779 CTCTCAAATTTTTCATTAAA
1 CTCTAAAATTTCTCATTAAA
74340799 TTTCTCAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.22, G:0.02, T:0.41
Consensus pattern (21 bp):
CTCTAAAATTTCTCATTAAAG
Found at i:74340991 original size:18 final size:17
Alignment explanation
Indices: 74340968--74341047 Score: 65
Period size: 18 Copynumber: 4.6 Consensus size: 17
74340958 AAGGGTTAAT
74340968 TTTAATATTTGAATATTA
1 TTTAATATTT-AATATTA
**
74340986 TTTAATATTTTTTATTTA
1 TTTAATATTTAATA-TTA
* *
74341004 TGTAAT-TTTAAT-TAA
1 TTTAATATTTAATATTA
*
74341019 TTTTAATTTTTGAATATTA
1 -TTTAATATTT-AATATTA
74341038 TTTAATATTT
1 TTTAATATTT
74341048 TTTTCATTTA
Statistics
Matches: 48, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
15 2 0.04
16 5 0.10
17 9 0.19
18 30 0.62
19 2 0.04
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (17 bp):
TTTAATATTTAATATTA
Found at i:74341013 original size:24 final size:24
Alignment explanation
Indices: 74340986--74341069 Score: 78
Period size: 25 Copynumber: 3.2 Consensus size: 24
74340976 TTGAATATTA
74340986 TTTAATATTTTTTATTTATGTAAT
1 TTTAATATTTTTTATTTATGTAAT
* * * *
74341010 TTTAATTAATTTTAATTTTTGAATATT
1 TTTAA-TATTTTTTATTTATG--TAAT
74341037 ATTTAATATTTTTTTCATTTATGTAAT
1 -TTTAATA-TTTTTT-ATTTATGTAAT
74341064 TTTAAT
1 TTTAAT
74341070 TAATTTGTAT
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
24 5 0.11
25 12 0.26
26 6 0.13
27 8 0.17
28 9 0.20
29 6 0.13
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.64
Consensus pattern (24 bp):
TTTAATATTTTTTATTTATGTAAT
Found at i:74341037 original size:52 final size:54
Alignment explanation
Indices: 74340963--74341075 Score: 203
Period size: 52 Copynumber: 2.1 Consensus size: 54
74340953 ATGATAAGGG
74340963 TTAATTTTAATATTTGAATATTATTTAATA-TTTTTT-ATTTATGTAATTTTAA
1 TTAATTTTAATATTTGAATATTATTTAATATTTTTTTCATTTATGTAATTTTAA
*
74341015 TTAATTTTAATTTTTGAATATTATTTAATATTTTTTTCATTTATGTAATTTTAA
1 TTAATTTTAATATTTGAATATTATTTAATATTTTTTTCATTTATGTAATTTTAA
74341069 TTAATTT
1 TTAATTT
74341076 GTATTTTATA
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
52 29 0.50
53 6 0.10
54 23 0.40
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.63
Consensus pattern (54 bp):
TTAATTTTAATATTTGAATATTATTTAATATTTTTTTCATTTATGTAATTTTAA
Found at i:74344493 original size:36 final size:36
Alignment explanation
Indices: 74344446--74344517 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
74344436 TTCTTTCTGC
74344446 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
1 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
74344482 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
1 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
74344518 TTCTTCTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.17, C:0.50, G:0.03, T:0.31
Consensus pattern (36 bp):
CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
Found at i:74344646 original size:21 final size:21
Alignment explanation
Indices: 74344634--74344674 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
74344624 CACGACCACA
*
74344634 GTTCCACAAGCCACAAACAAG
1 GTTCCACAAGCCACAACCAAG
74344655 GTTCCACAAGCCACAACCAA
1 GTTCCACAAGCCACAACCAA
74344675 CGTCAGTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.37, G:0.12, T:0.10
Consensus pattern (21 bp):
GTTCCACAAGCCACAACCAAG
Found at i:74345037 original size:16 final size:16
Alignment explanation
Indices: 74345018--74345049 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
74345008 TACTAATCAA
*
74345018 AGTTTCTATGTTTCTG
1 AGTTTCCATGTTTCTG
74345034 AGTTTCCATGTTTCTG
1 AGTTTCCATGTTTCTG
74345050 CCTGTCTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.16, G:0.19, T:0.53
Consensus pattern (16 bp):
AGTTTCCATGTTTCTG
Found at i:74345199 original size:47 final size:47
Alignment explanation
Indices: 74345127--74345220 Score: 161
Period size: 47 Copynumber: 2.0 Consensus size: 47
74345117 AATTAAATTA
** *
74345127 ACCATTATTAGCAGGTTTAGTTTCATTTAAGTCATGCATATATATAT
1 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATATAT
74345174 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATATAT
1 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATATAT
74345221 TAATGCATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (47 bp):
ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATATAT
Found at i:74345257 original size:36 final size:36
Alignment explanation
Indices: 74345217--74345289 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
74345207 AAGCATATAT
** *
74345217 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCATATACATAATGTTTAGCTTCATTTA
*
74345253 ATATTAATGCATATACATAATGTTTTGCTTCATTTA
1 ATATTAATGCATATACATAATGTTTAGCTTCATTTA
74345289 A
1 A
74345290 GTCATGCGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.11, G:0.10, T:0.47
Consensus pattern (36 bp):
ATATTAATGCATATACATAATGTTTAGCTTCATTTA
Found at i:74345327 original size:43 final size:42
Alignment explanation
Indices: 74345280--74345360 Score: 128
Period size: 42 Copynumber: 1.9 Consensus size: 42
74345270 TAATGTTTTG
*
74345280 CTTCATTTAAGTCATGCGCATAA-TGCATATATATTCCATTTAA
1 CTTCATTTAAGTCAT--GCATAATTGCATATATATACCATTTAA
74345323 CTTCATTTAAGTCATGCATAATTGCATATATATACCAT
1 CTTCATTTAAGTCATGCATAATTGCATATATATACCAT
74345361 AATTTTCAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
41 6 0.17
42 15 0.42
43 15 0.42
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.40
Consensus pattern (42 bp):
CTTCATTTAAGTCATGCATAATTGCATATATATACCATTTAA
Found at i:74345395 original size:87 final size:87
Alignment explanation
Indices: 74345304--74345582 Score: 225
Period size: 87 Copynumber: 3.1 Consensus size: 87
74345294 TGCGCATAAT
74345304 GCATATATATTCCATTTAACTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTTTCA
1 GCATATATATTCCATTTAACTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTTTCA
74345369 GGTTTAGCTTGAGTTAAGCCAA
66 GGTTTAGCTTGAGTTAAGCCAA
* * ** *
74345391 GCATATATATATTAATGCATATGTATAC-T-GTTT-AGCTTCATTTAATATTAATGCATATATAT
1 GC--ATATATA-T--TCCAT-T-TA-ACTTCATTTAAG--TCA-TGCATA--ATTGCATATATAT
* * * * * *
74345453 A--AT-GTTTT--GCTTTA-TTTAAGTCATGCGCATAA
53 ACCATAATTTTCAGGTTTAGCTTGAGTTAAGC-C--AA
**
74345485 TGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGC
1 -GCATATATATTCCATTTAACTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTTTC
74345550 AGGTTTAGCTTGAGTTAAGCCAA
65 AGGTTTAGCTTGAGTTAAGCCAA
74345573 GCATATATAT
1 GCATATATAT
74345583 ATTAATGCAT
Statistics
Matches: 142, Mismatches: 24, Indels: 52
0.65 0.11 0.24
Matches are distributed among these distances:
85 13 0.09
87 20 0.14
88 10 0.07
89 11 0.08
90 13 0.09
91 16 0.11
92 13 0.09
93 11 0.08
94 12 0.08
95 10 0.07
97 13 0.09
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.41
Consensus pattern (87 bp):
GCATATATATTCCATTTAACTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTTTCA
GGTTTAGCTTGAGTTAAGCCAA
Found at i:74345446 original size:36 final size:36
Alignment explanation
Indices: 74345399--74345471 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
74345389 AAGCATATAT
* *
74345399 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
* *
74345435 ATATTAATGCATATATATAATGTTTTGCTTTATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
74345471 A
1 A
74345472 GTCATGCGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (36 bp):
ATATTAATGCATATATATAATGTTTAGCTTCATTTA
Found at i:74345449 original size:182 final size:182
Alignment explanation
Indices: 74345166--74345681 Score: 910
Period size: 182 Copynumber: 2.8 Consensus size: 182
74345156 AGTCATGCAT
* * * * *
74345166 ATATATATACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATATATTAATGCATAT
1 ATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATTAATGCATAT
*
74345231 GTATACTGTTTAGCTTCATTTAATATTAATGCATATACATAATGTTTTGCTTCATTTAAGTCATG
66 GTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAATGTTTTGCTTCATTTAAGTCATG
74345296 CGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAATTGC
131 CGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAATTGC
**
74345348 ATATATATACCATAATTTTCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATTAATGCATAT
1 ATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATTAATGCATAT
*
74345413 GTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAATGTTTTGCTTTATTTAAGTCATG
66 GTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAATGTTTTGCTTCATTTAAGTCATG
74345478 CGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAATTGC
131 CGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAATTGC
74345530 ATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATTAATGCATAT
1 ATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATTAATGCATAT
*
74345595 GTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGTTTTGCTTCATTTAAGTCAT-
66 GTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAATGTTTTGCTTCATTTAAGTCATG
*
74345659 -GCATAATTGCATATATATACCAT
131 CGCATAA-TGCATATATATTCCAT
74345682 AATTAGCAGA
Statistics
Matches: 319, Mismatches: 14, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
180 6 0.02
181 15 0.05
182 298 0.93
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.41
Consensus pattern (182 bp):
ATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCATATATATATTAATGCATAT
GTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAATGTTTTGCTTCATTTAAGTCATG
CGCATAATGCATATATATTCCATTTAACTTCATTTAAGTCATGCATAATTGC
Found at i:74345629 original size:36 final size:36
Alignment explanation
Indices: 74345581--74345653 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
74345571 AAGCATATAT
* * *
74345581 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
*
74345617 ATATTAAGGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
74345653 A
1 A
74345654 GTCATGCATA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.47
Consensus pattern (36 bp):
ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
Found at i:74345656 original size:139 final size:141
Alignment explanation
Indices: 74345505--74345827 Score: 544
Period size: 145 Copynumber: 2.3 Consensus size: 141
74345495 TTCCATTTAA
*
74345505 CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGC
1 CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGC
74345570 CAAGC-AT-ATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATAT
66 CAAGCAATAATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATAT
74345633 ATAATGTTTTG
131 ATAATGTTTTG
74345644 CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGC
1 CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGC
74345709 CAAGCATATATAAATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCAT
66 CAAGC--A-AT-AATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCAT
74345774 ATATATAATGTTTTG
127 ATATATAATGTTTTG
* *
74345789 CTTCATTTAAGTCATGCGCAT-AGTGCATATATATTCCAT
1 CTTCATTTAAGTCAT--GCATAATTGCATATATATACCAT
74345828 TTAACTTCAT
Statistics
Matches: 173, Mismatches: 3, Indels: 9
0.94 0.02 0.05
Matches are distributed among these distances:
139 69 0.40
143 2 0.01
145 82 0.47
146 16 0.09
147 4 0.02
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40
Consensus pattern (141 bp):
CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGC
CAAGCAATAATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATAT
ATAATGTTTTG
Found at i:74345774 original size:36 final size:36
Alignment explanation
Indices: 74345726--74345798 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
74345716 ATATAAATAT
* * *
74345726 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
*
74345762 ATATTAAGGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
74345798 A
1 A
74345799 GTCATGCGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.47
Consensus pattern (36 bp):
ATATTAAGGCATATATATAATGTTTAGCTTCATTTA
Found at i:74345818 original size:327 final size:323
Alignment explanation
Indices: 74345323--74345991 Score: 1180
Period size: 327 Copynumber: 2.1 Consensus size: 323
74345313 TTCCATTTAA
** *
74345323 CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTTTCAGGTTTAGCTTGAGTTAAGC
1 CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGC
*
74345388 CAAGCATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATAT
66 CAAGCATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATAT
*
74345453 AATGTTTTGCTTTATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTC
131 AATGTTTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTC
74345518 ATGCATAATTGC-ATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGC-ATATAT
196 ATGCATAATTGCAATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCAATATAT
74345581 ATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGTTTTG
261 ATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGTTTTG
74345644 CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGC
1 CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGC
74345709 CAAGCATATATAAATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCAT
66 CAAGC----AT--ATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCAT
*
74345774 ATATATAATGTTTTGCTTCATTTAAGTCATGCGCATAGTGCATATATATTCCATTTAACTTCATT
125 ATATATAATGTTTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATT
*
74345839 TAAGTCATGCATAATTGCATATATATATATCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGC
190 TAAGTCATGCATAATTGCA-ATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGC
*
74345904 ATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAAT
254 A-ATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAAT
74345969 GTTTTG
318 GTTTTG
74345975 CTTCATTTAAGTCATGC
1 CTTCATTTAAGTCATGC
74345992 GCATATATAT
Statistics
Matches: 330, Mismatches: 8, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
321 67 0.20
325 2 0.01
327 132 0.40
329 44 0.13
331 85 0.26
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.41
Consensus pattern (323 bp):
CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGC
CAAGCATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATAT
AATGTTTTGCTTCATTTAAGTCATGCGCATAATGCATATATATTCCATTTAACTTCATTTAAGTC
ATGCATAATTGCAATATATATACCATAATTAGCAGGTTTAGCTTGAGTTAAGCCAAGCAATATAT
ATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATATATATAATGTTTTG
Found at i:74345943 original size:186 final size:186
Alignment explanation
Indices: 74345644--74345996 Score: 629
Period size: 186 Copynumber: 1.9 Consensus size: 186
74345634 TAATGTTTTG
74345644 CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGC
1 CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGC
74345709 CAAGCATATATAAATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCAT
66 CAAGCA-ATAT-AATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCAT
74345774 ATATATAATGTTTTGCTTCATTTAAGTCATGCGCATAGTGCATATATATTCCATTTAA
129 ATATATAATGTTTTGCTTCATTTAAGTCATGCGCATAGTGCATATATATTCCATTTAA
* *
74345832 CTTCATTTAAGTCATGCATAATTGCATATATATATATCATAATTAGCAGGTTTAGCTTGAGTTAA
1 CTTCATTTAAGTCATGCATAATTGC--ATATATATACCATAATTAGCAGATTTAGCTTGAGTTAA
*
74345897 GCCAAGC-ATAT-ATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCAT
64 GCCAAGCAATATAATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCAT
74345960 ATATATAATGTTTTGCTTCATTTAAGTCATGCGCATA
129 ATATATAATGTTTTGCTTCATTTAAGTCATGCGCATA
74345997 TATATATTAA
Statistics
Matches: 160, Mismatches: 3, Indels: 6
0.95 0.02 0.04
Matches are distributed among these distances:
186 88 0.55
188 29 0.18
190 43 0.27
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.41
Consensus pattern (186 bp):
CTTCATTTAAGTCATGCATAATTGCATATATATACCATAATTAGCAGATTTAGCTTGAGTTAAGC
CAAGCAATATAATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAAGGCATAT
ATATAATGTTTTGCTTCATTTAAGTCATGCGCATAGTGCATATATATTCCATTTAA
Found at i:74345959 original size:36 final size:36
Alignment explanation
Indices: 74345912--74345984 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
74345902 GCATATATAT
* *
74345912 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
*
74345948 ATATTAATGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
74345984 A
1 A
74345985 GTCATGCGCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.48
Consensus pattern (36 bp):
ATATTAATGCATATATATAATGTTTAGCTTCATTTA
Found at i:74346036 original size:57 final size:52
Alignment explanation
Indices: 74345974--74346110 Score: 178
Period size: 46 Copynumber: 2.6 Consensus size: 52
74345964 ATAATGTTTT
74345974 GCTTCATTTAAGTCATGCGCATATATATATTAATGCATTATGCATATATTCCATTTA
1 GCTTCATTTAAGTCAT--GCATATATATATT-AT--ATTATGCATATATTCCATTTA
74346031 GCTTCATTTAAGTCATGC----ATATA-T-TATTATGCATATATTCCATTTA
1 GCTTCATTTAAGTCATGCATATATATATTATATTATGCATATATTCCATTTA
74346077 GCTTCATTTAAGTCATGCATATATTATATTATAT
1 GCTTCATTTAAGTCATGCATATA-TATATTATAT
74346111 ATATATATAT
Statistics
Matches: 73, Mismatches: 0, Indels: 18
0.80 0.00 0.20
Matches are distributed among these distances:
46 39 0.53
48 1 0.01
50 2 0.03
51 9 0.12
52 1 0.01
53 3 0.04
55 2 0.03
57 16 0.22
ACGTcount: A:0.31, C:0.15, G:0.09, T:0.45
Consensus pattern (52 bp):
GCTTCATTTAAGTCATGCATATATATATTATATTATGCATATATTCCATTTA
Found at i:74346061 original size:46 final size:46
Alignment explanation
Indices: 74346010--74346103 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
74346000 ATATTAATGC
74346010 ATTATGCATATATTCCATTTAGCTTCATTTAAGTCATGCATATATT
1 ATTATGCATATATTCCATTTAGCTTCATTTAAGTCATGCATATATT
74346056 ATTATGCATATATTCCATTTAGCTTCATTTAAGTCATGCATATATT
1 ATTATGCATATATTCCATTTAGCTTCATTTAAGTCATGCATATATT
74346102 AT
1 AT
74346104 ATTATATATA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.31, C:0.15, G:0.09, T:0.46
Consensus pattern (46 bp):
ATTATGCATATATTCCATTTAGCTTCATTTAAGTCATGCATATATT
Found at i:74346646 original size:36 final size:36
Alignment explanation
Indices: 74346599--74346672 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
74346589 TTTTATAAGT
74346599 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
1 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
74346635 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
1 AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
74346671 AA
1 AA
74346673 CGCTTTAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.22, C:0.08, G:0.16, T:0.54
Consensus pattern (36 bp):
AAGTTACTCCATTGTTTTTGTTTTGAGTTAATTTTG
Found at i:74349551 original size:21 final size:21
Alignment explanation
Indices: 74349525--74349566 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
74349515 ATTTTGCATA
74349525 CCTAAAATAGTTCTTTACATG
1 CCTAAAATAGTTCTTTACATG
74349546 CCTAAAATAGTTCTTTACATG
1 CCTAAAATAGTTCTTTACATG
74349567 TAATTATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (21 bp):
CCTAAAATAGTTCTTTACATG
Found at i:74349594 original size:21 final size:22
Alignment explanation
Indices: 74349570--74349612 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
74349560 TTACATGTAA
* *
74349570 TTATTTAG-TAAATTATATTGT
1 TTATGTAGTTAAATAATATTGT
74349591 TTATGTAGTTAAATAATATTGT
1 TTATGTAGTTAAATAATATTGT
74349613 AATTCGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (22 bp):
TTATGTAGTTAAATAATATTGT
Found at i:74351838 original size:18 final size:18
Alignment explanation
Indices: 74351815--74351852 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
74351805 CTACCTAACA
74351815 TATTATCATT-ATTACTAT
1 TATTAT-ATTAATTACTAT
*
74351833 TATTATTTTAATTACTAT
1 TATTATATTAATTACTAT
74351851 TA
1 TA
74351853 ACATTAGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (18 bp):
TATTATATTAATTACTAT
Found at i:74351987 original size:3 final size:3
Alignment explanation
Indices: 74351981--74352080 Score: 84
Period size: 3 Copynumber: 34.3 Consensus size: 3
74351971 CATTATGTTG
* * * *
74351981 TTA TTA TTA TTA TTA CTA ATA TCA CTA TTA TTA TTA TTA TTA TCTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* *
74352027 ATA -TA TTA TTA -TA CTT- TT- TTA TTA TTA CTA TTA -TA TTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
74352068 CTA TTA TTA TTA T
1 TTA TTA TTA TTA T
74352081 ATTTTCTTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 12
0.77 0.12 0.12
Matches are distributed among these distances:
2 10 0.13
3 66 0.84
4 3 0.04
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:74352033 original size:24 final size:27
Alignment explanation
Indices: 74351981--74352079 Score: 94
Period size: 27 Copynumber: 3.6 Consensus size: 27
74351971 CATTATGTTG
74351981 TTATTATTATTATTACTAATATCACTA
1 TTATTATTATTATTACTAATATCACTA
*
74352008 TTATTATTATTATTATCTAATAT-ATTA
1 TTATTATTATTATTA-CTAATATCACTA
* * *
74352035 TTATACTTTTTTATTATTACTATTAT-ATTA
1 -T-TA--TTATTATTATTACTAATATCACTA
*
74352065 TTACTATTATTATTA
1 TTATTATTATTATTA
74352080 TATTTTCTTT
Statistics
Matches: 62, Mismatches: 5, Indels: 11
0.79 0.06 0.14
Matches are distributed among these distances:
26 10 0.16
27 18 0.29
28 10 0.16
29 3 0.05
30 10 0.16
31 11 0.18
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (27 bp):
TTATTATTATTATTACTAATATCACTA
Found at i:74352262 original size:3 final size:3
Alignment explanation
Indices: 74352241--74352462 Score: 80
Period size: 3 Copynumber: 73.7 Consensus size: 3
74352231 CAAACTTTAG
* * **
74352241 ATT ATTT ATT ATT -TGT ATT ATT GTT ATT ACT ATT -TAT ATTT ACC ATT
1 ATT A-TT ATT ATT AT-T ATT ATT ATT ATT ATT ATT AT-T A-TT ATT ATT
* * * *
74352288 ATT ATT ACT ATT ATT -TT CACCT -TT ATT ACT ATT ATT ATT -TT TTT
1 ATT ATT ATT ATT ATT ATT -A-TT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * *
74352332 ATT -TT TTCT ATT ACT ATT ATC ATT ATT ATT AAT ACT AAT ATT AGT
1 ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * ** *
74352377 ATT CTT ATT ATT ACTT -TT ATT ATT ATC ATT AGC ATT ATT ATT TTT
1 ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* ** * * **
74352422 ACT CCT ACT ATT ATT ATT ATC AAC ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
74352463 CGTTTTCACC
Statistics
Matches: 160, Mismatches: 44, Indels: 30
0.68 0.19 0.13
Matches are distributed among these distances:
2 11 0.07
3 137 0.86
4 10 0.06
5 2 0.01
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:74352984 original size:23 final size:23
Alignment explanation
Indices: 74352958--74353003 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
74352948 CAAAGTCAAT
74352958 ATCCGGTATTTGGAAGTTCGAGA
1 ATCCGGTATTTGGAAGTTCGAGA
74352981 ATCCGGTATTTGGAAGTTCGAGA
1 ATCCGGTATTTGGAAGTTCGAGA
74353004 TATTGTGCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.30
Consensus pattern (23 bp):
ATCCGGTATTTGGAAGTTCGAGA
Found at i:74365254 original size:10 final size:10
Alignment explanation
Indices: 74365239--74365268 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
74365229 CAGCGTCTTT
74365239 TTTGCATTCA
1 TTTGCATTCA
74365249 TTTGCATTCA
1 TTTGCATTCA
74365259 -TTGCATTCA
1 TTTGCATTCA
74365268 T
1 T
74365269 GCATCAGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.50
Consensus pattern (10 bp):
TTTGCATTCA
Found at i:74365264 original size:9 final size:9
Alignment explanation
Indices: 74365240--74365272 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
74365230 AGCGTCTTTT
74365240 TTGCATTCA
1 TTGCATTCA
74365249 TTTGCATTCA
1 -TTGCATTCA
74365259 TTGCATTCA
1 TTGCATTCA
74365268 -TGCAT
1 TTGCAT
74365273 CAGCATTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 5 0.22
9 9 0.39
10 9 0.39
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.45
Consensus pattern (9 bp):
TTGCATTCA
Found at i:74366282 original size:38 final size:38
Alignment explanation
Indices: 74366231--74366303 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
74366221 CATAATGAAA
74366231 GCTTTAGGCAATATGCCCAACGATGGAGCGAGGTGGTC
1 GCTTTAGGCAATATGCCCAACGATGGAGCGAGGTGGTC
74366269 GCTTTAGGCAATATGCCCAACGATGGAGCGAGGTG
1 GCTTTAGGCAATATGCCCAACGATGGAGCGAGGTG
74366304 ACCACACAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.25, C:0.21, G:0.34, T:0.21
Consensus pattern (38 bp):
GCTTTAGGCAATATGCCCAACGATGGAGCGAGGTGGTC
Found at i:74373432 original size:44 final size:44
Alignment explanation
Indices: 74373377--74373792 Score: 274
Period size: 43 Copynumber: 9.5 Consensus size: 44
74373367 TACAGATCTT
*
74373377 AACCCCTTAAGCAGTAGGGAAATAGACCGAAGGTGATGGGCCTTA
1 AACCCC-TAAGCAGTAGGGAAACAGACCGAAGGTGATGGGCCTTA
* * * * ** **
74373422 AACCCCTAAGCAGTAGGGTAACA-AGCTGAA-TTTACAGATCTTA
1 AACCCCTAAGCAGTAGGGAAACAGA-CCGAAGGTGATGGGCCTTA
* * * * *
74373465 ACCCCCTAAGCAATAGGGAAACAGACCAAAGATGATGGGCCGTA
1 AACCCCTAAGCAGTAGGGAAACAGACCGAAGGTGATGGGCCTTA
* * * ** * **
74373509 AACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAT--ATCTTA
1 AACCCCTAAGCAGTAGGGAAACAGACCGAAGGT-GATGGGCCTTA
* *
74373552 ACCCCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGGGCCTTA
1 AACCCCTAAGCAGTAGGGAAACAGACCGAAGGTGATGGGCCTTA
* * * * * ** **
74373596 AACCCCTAAGCAGTAGGGTAACAGGCTGAA-TTTACAGATCTT-
1 AACCCCTAAGCAGTAGGGAAACAGACCGAAGGTGATGGGCCTTA
*
74373638 AACCCCTTAAGCAGTAGGGAAATAGACCGAAGGTGATGGGCCTTA
1 AACCCC-TAAGCAGTAGGGAAACAGACCGAAGGTGATGGGCCTTA
* * * ** * ** **
74373683 AACCCCTAAGTAGTAGGGTAACAGGA--TAAATTTACAGATCTTA
1 AACCCCTAAGCAGTAGGGAAACA-GACCGAAGGTGATGGGCCTTA
* * * *
74373726 ACCCCCTAAGTAGTA-GGAAACAGATCGAAGGTGATAGGCCTTA
1 AACCCCTAAGCAGTAGGGAAACAGACCGAAGGTGATGGGCCTTA
* *
74373769 AATCCCTAAGCAGTAGGGCAACAG
1 AACCCCTAAGCAGTAGGGAAACAG
74373793 GCTAGAAATT
Statistics
Matches: 270, Mismatches: 88, Indels: 27
0.70 0.23 0.07
Matches are distributed among these distances:
41 2 0.01
42 14 0.05
43 131 0.49
44 107 0.40
45 16 0.06
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (44 bp):
AACCCCTAAGCAGTAGGGAAACAGACCGAAGGTGATGGGCCTTA
Found at i:74373482 original size:87 final size:87
Alignment explanation
Indices: 74373338--74374099 Score: 859
Period size: 87 Copynumber: 8.7 Consensus size: 87
74373328 CAAGCCTTAC
* * *
74373338 CCCCTAAGCAGTGGGGTAACA-GCTGAATTTACAGATCTTAACCCCTTAAGCAGTAGGGAAATAG
1 CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
* *
74373402 ACCGAAGGTGATGGGCCTTAAA
66 ATCGAAGATGATGGGCCTTAAA
* *
74373424 CCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAGATCTTAACCCCCTAAGCAATAGGGAAACAG
1 CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
* * *
74373489 ACCAAAGATGATGGGCCGTAAA
66 ATCGAAGATGATGGGCCTTAAA
*
74373511 CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACATATCTTAACCCCCTAAGCAGTAGGGAAACAG
1 CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
*
74373576 ATCGAAGGTGATGGGCCTTAAA
66 ATCGAAGATGATGGGCCTTAAA
* *
74373598 CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCTTAAGCAGTAGGGAAATAG
1 CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
* *
74373663 ACCGAAGGTGATGGGCCTTAAA
66 ATCGAAGATGATGGGCCTTAAA
* * * *
74373685 CCCCTAAGTAGTAGGGTAACAGGATAAATTTACAGATCTTAACCCCCTAAGTAGTA-GGAAACAG
1 CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
* *
74373749 ATCGAAGGTGATAGGCCTTAAA
66 ATCGAAGATGATGGGCCTTAAA
* * * ** * **
74373771 TCCCTAAGCAGTAGGGCAACAGGCTAGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGG-AGT
1 CCCCTAAGCAGTAGGGTAACAGGCT-GAATTTACAGATCTTAACCCCCTAAGCAGTAG-GGAAAC
* * ** *
74373835 AGATCAAAGATGGTGAACCTTAAC
64 AGATCGAAGATGATGGGCCTTAAA
* * ** * * *
74373859 CCCCTAAGCAGTAGGGCAACAGGCTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCG-AGCA
1 CCCCTAAGCAGTAGGGTAACAGGCT-GAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
* * * * ** *
74373923 CATCAAAAATGGTAAGCCTTAAC
65 GATCGAAGATGATGGGCCTTAAA
* * * * * *
74373946 CCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAATAGTGG-AGC
1 CCCCTAAGCAGTAGGGTAACAGGCT-GAATTTACAGATCTTAACCCCCTAAGCAGTAG-GGAAAC
* * *
74374010 AGATCGAAGACGATGAGCCTTAAC
64 AGATCGAAGATGATGGGCCTTAAA
* * * * * *
74374034 CCCCTAAGCAGTAGGGTAATAGGCTGAAAATTACATATCTTATCACCCTAAGCAGTAGGGTAACA
1 CCCCTAAGCAGTAGGGTAACAGGCTG-AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
74374099 G
65 G
74374100 GCTGAAAATT
Statistics
Matches: 598, Mismatches: 71, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
86 68 0.11
87 376 0.63
88 152 0.25
89 2 0.00
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.21
Consensus pattern (87 bp):
CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
ATCGAAGATGATGGGCCTTAAA
Found at i:74373819 original size:44 final size:44
Alignment explanation
Indices: 74373771--74374126 Score: 180
Period size: 44 Copynumber: 8.1 Consensus size: 44
74373761 AGGCCTTAAA
* *
74373771 TCCCTAAGCAGTAGGGCAACAGGCTAGAAATTACAGATCTTGTC
1 TCCCTAAGCAGTAGGGCAACAGGCTAAAAATTACAGATCTTATC
** * * * * *
74373815 TCCCTAAGCAGTAGCGG-AGTA-GATCAAAGATGGT-GA-ACCTTAAC
1 TCCCTAAGCAGTAG-GGCAACAGGCT-AAAAAT--TACAGATCTTATC
* ** *
74373859 CCCCTAAGCAGTAGGGCAACAGGCTGGAAATTACAGATCTTGTC
1 TCCCTAAGCAGTAGGGCAACAGGCTAAAAATTACAGATCTTATC
* * *
74373903 TCCCTAAGCAGTAGCGAGC-ACA-TC-AAAAATGGTA-AG-CCTTAAC
1 TCCCTAAGCAGTAG-G-GCAACAGGCTAAAAAT--TACAGATCTTATC
* *
74373946 CCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATC
1 TCCCTAAGCAGTAGGGCAACAGGCTAAAAATTACAGATCTTATC
* * * ** * * *
74373990 TCCCTAAGCAATAGTGG-AGCA-GAT-CGAA-GACGATGAGCCTTAAC
1 TCCCTAAGCAGTAG-GGCAACAGGCTAAAAATTAC-A-GA-TCTTATC
* * * * *
74374034 CCCCTAAGCAGTAGGGTAATAGGCTGAAAATTACATATCTTATC
1 TCCCTAAGCAGTAGGGCAACAGGCTAAAAATTACAGATCTTATC
* * * * * *
74374078 ACCCTAAGCAGTAGGGTAACAGGCTGAAAATTTCAAACCTTATC
1 TCCCTAAGCAGTAGGGCAACAGGCTAAAAATTACAGATCTTATC
74374122 TCCCT
1 TCCCT
74374127 GAAGTTGCAG
Statistics
Matches: 229, Mismatches: 58, Indels: 50
0.68 0.17 0.15
Matches are distributed among these distances:
41 3 0.01
42 10 0.04
43 35 0.15
44 157 0.69
45 16 0.07
46 6 0.03
47 2 0.01
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (44 bp):
TCCCTAAGCAGTAGGGCAACAGGCTAAAAATTACAGATCTTATC
Found at i:74374221 original size:45 final size:44
Alignment explanation
Indices: 74374111--74374240 Score: 145
Period size: 45 Copynumber: 2.9 Consensus size: 44
74374101 CTGAAAATTT
* * **
74374111 CAAACCTTATCTCCCTGAAGTTGCAGTGCAGCAGGTTGAAGTCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTCA
* * *
74374155 CAAGTCTTATCTCACTGAAGTTGTAGTGGAGCAGACTGAAGAT-A
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TCA
* * *
74374199 GCAAATCTTATTTCCCTGAAGTTGCAATGGAACAGACTGAAG
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
74374241 CTATAAATAA
Statistics
Matches: 71, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
44 35 0.49
45 36 0.51
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (44 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTCA
Found at i:74374334 original size:41 final size:41
Alignment explanation
Indices: 74374249--74374326 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
74374239 AGCTATAAAT
*
74374249 AAACAGATCTTATCTCTCTGAAGTTGCAGGAGAGCAGATCA
1 AAACAGATCTTATCTCTCTGAAGTTACAGGAGAGCAGATCA
*
74374290 AAACAGATCTTATTTCTCTGAAGTTACAGTG-GAGCAG
1 AAACAGATCTTATCTCTCTGAAGTTACAG-GAGAGCAG
74374327 GTTAAAACTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
41 33 0.97
42 1 0.03
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (41 bp):
AAACAGATCTTATCTCTCTGAAGTTACAGGAGAGCAGATCA
Found at i:74375220 original size:27 final size:28
Alignment explanation
Indices: 74375190--74375243 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
74375180 AAAAAAAGAA
74375190 AGAAA-GAA-ATTTTTTTTAAAACAAATG
1 AGAAATGAATATTTTTTTTAAAA-AAATG
*
74375217 AGAAATGAATTTTTTTTTTAAAAAAAT
1 AGAAATGAATATTTTTTTTAAAAAAAT
74375244 CTGACTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 5 0.21
28 7 0.29
29 12 0.50
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (28 bp):
AGAAATGAATATTTTTTTTAAAAAAATG
Found at i:74378530 original size:126 final size:126
Alignment explanation
Indices: 74378292--74378544 Score: 328
Period size: 126 Copynumber: 2.0 Consensus size: 126
74378282 GGCCAAACAT
* * ** * ** *
74378292 GAACTACTGTAGAAAAAGAGCATCCATGTGGGAGCTTTTTTTTGAAATTTTGCTGACATTGCATC
1 GAACTACTGTAGAAAAAGACCATCCACGTGGGAGCTTTTTTCAGAAATTTTCCTGACAGGGCATA
* * * * *
74378357 CTTCTTGAAGCGTTTTTGACACTAGTTGTTCAAAAACGTCTTTTCAAAATTATTTTTTCAG
66 CTGCTTGAAGCATTTTTGACACTAGTTGTTCAAAAACATCTTCTCAAAATTATTTTTGCAG
* * *
74378418 GAACTACTGTAGAAAAATACCGTCCACGTGGGAGCTTTTTTCAGTAATTTTCCAT-ACAGGGCAT
1 GAACTACTGTAGAAAAAGACCATCCACGTGGGAGCTTTTTTCAGAAATTTTCC-TGACAGGGCAT
* *
74378482 ACTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTGCAG
65 ACTGCTTGAAGCATTTTTGACACTAGTTGTTCAAAAACATCTTCTCAAAATTATTTTTGCAG
74378544 G
1 G
74378545 GTAAAAAAAG
Statistics
Matches: 108, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
126 107 0.99
127 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.37
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGACCATCCACGTGGGAGCTTTTTTCAGAAATTTTCCTGACAGGGCATA
CTGCTTGAAGCATTTTTGACACTAGTTGTTCAAAAACATCTTCTCAAAATTATTTTTGCAG
Found at i:74378666 original size:34 final size:33
Alignment explanation
Indices: 74378598--74378723 Score: 138
Period size: 34 Copynumber: 3.9 Consensus size: 33
74378588 TTTAAAAAAC
* *
74378598 TAAACCGTAATTTAATTAA--T-TTT--AACCC
1 TAAACCCTAATTTAATTAATTTATTTAAAACCA
*
74378626 TAAACCCTAATTTAATTAATTTATTTAAAACCTT
1 TAAACCCTAATTTAATTAATTTATTTAAAACC-A
*
74378660 TAAACCCTAATTTACTTAATTTATTTAAAAACCA
1 TAAACCCTAATTTAATTAATTTATTT-AAAACCA
*
74378694 TAAACCTTAATTTAATTAATTT-TTATAAAA
1 TAAACCCTAATTTAATTAATTTATT-TAAAA
74378724 TAACAGTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 11
0.83 0.06 0.11
Matches are distributed among these distances:
28 18 0.21
30 1 0.01
31 3 0.04
33 10 0.12
34 46 0.55
35 6 0.07
ACGTcount: A:0.43, C:0.14, G:0.01, T:0.42
Consensus pattern (33 bp):
TAAACCCTAATTTAATTAATTTATTTAAAACCA
Found at i:74378739 original size:36 final size:34
Alignment explanation
Indices: 74378588--74378743 Score: 123
Period size: 34 Copynumber: 4.7 Consensus size: 34
74378578 CAATATTATT
*
74378588 TTTAAAAAAC-TAAACCGTAATTTAATTAA--T-
1 TTTAAAAAACATAAACCTTAATTTAATTAATTTA
* * *
74378618 TTT---AACCCTAAACCCTAATTTAATTAATTTA
1 TTTAAAAAACATAAACCTTAATTTAATTAATTTA
* * * *
74378649 TTT-AAAACCTTTAAACCCTAATTTACTTAATTTA
1 TTTAAAAAAC-ATAAACCTTAATTTAATTAATTTA
*
74378683 TTTAAAAACCATAAACCTTAATTTAATTAATTT-
1 TTTAAAAAACATAAACCTTAATTTAATTAATTTA
*
74378716 TTATAAAATAACAGTAAATCTTAATTTA
1 TT-TAAAA-AACA-TAAACCTTAATTTA
74378744 TTTTTAAAAT
Statistics
Matches: 106, Mismatches: 9, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
27 3 0.03
28 18 0.17
30 4 0.04
31 3 0.03
33 6 0.06
34 50 0.47
35 9 0.08
36 13 0.12
ACGTcount: A:0.44, C:0.13, G:0.01, T:0.41
Consensus pattern (34 bp):
TTTAAAAAACATAAACCTTAATTTAATTAATTTA
Found at i:74378815 original size:34 final size:35
Alignment explanation
Indices: 74378760--74378837 Score: 106
Period size: 34 Copynumber: 2.3 Consensus size: 35
74378750 AAATCCACTA
* * *
74378760 AAACCCTAAACCTTAACTTATTTTAACAAAAATCT
1 AAACCCTAAACCTTAAATTATTTCAACAAAAACCT
*
74378795 AAACCCTAAA-CTTAAATTATTTCAACAAAACCCT
1 AAACCCTAAACCTTAAATTATTTCAACAAAAACCT
74378829 AAA-CCTAAA
1 AAACCCTAAA
74378838 AACCCTAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
33 6 0.15
34 23 0.59
35 10 0.26
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (35 bp):
AAACCCTAAACCTTAAATTATTTCAACAAAAACCT
Found at i:74381561 original size:43 final size:46
Alignment explanation
Indices: 74381495--74381619 Score: 168
Period size: 43 Copynumber: 2.8 Consensus size: 46
74381485 CTTCAGTGTG
*
74381495 AGTTGCCTTGAGTTGGCTTCGGGCCATGGTATAGGCATT-C-G-GA
1 AGTTACCTTGAGTTGGCTTCGGGCCATGGTATAGGCATTCCAGCGA
* *
74381538 GAG-TACCTTGAGTTGGCTTCGGGCCATGGTATAAGTATTCCAAGCGA
1 -AGTTACCTTGAGTTGGCTTCGGGCCATGGTATAGGCATTCC-AGCGA
*
74381585 AGTTACCTTGAGTTGGCTTCGGGCCATTGTATAGG
1 AGTTACCTTGAGTTGGCTTCGGGCCATGGTATAGG
74381620 TACCTATCGT
Statistics
Matches: 71, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
43 33 0.46
44 3 0.04
46 3 0.04
47 32 0.45
ACGTcount: A:0.19, C:0.18, G:0.32, T:0.30
Consensus pattern (46 bp):
AGTTACCTTGAGTTGGCTTCGGGCCATGGTATAGGCATTCCAGCGA
Found at i:74386170 original size:15 final size:15
Alignment explanation
Indices: 74386150--74386181 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
74386140 GCAAGCAGAG
74386150 TTAGAAAACTACCCT
1 TTAGAAAACTACCCT
74386165 TTAGAAAACTACCCT
1 TTAGAAAACTACCCT
74386180 TT
1 TT
74386182 GTATACCTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (15 bp):
TTAGAAAACTACCCT
Found at i:74390931 original size:66 final size:66
Alignment explanation
Indices: 74390761--74390931 Score: 182
Period size: 66 Copynumber: 2.6 Consensus size: 66
74390751 GACTTGGGTT
* * * *
74390761 ACACGGCCAAGCCACATGTCCGTGTGCTAGGCCGTGAGAAAAATGATGAGCATACTAACTTGTGA
1 ACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGAAAAATGATGAGCATACTAACTTATGA
74390826 C
66 C
* * * * * * * * *
74390827 ACACGACCAAGCCATACGGCCGTGTGCTAGGCCCTGTGAAAACTGGA-GGGTATATTGACTTATG
1 ACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGAAAAAT-GATGAGCATACTAACTTATG
*
74390891 TC
65 AC
* *
74390893 ACATGGCCAAGTCACACGCCCGTGTGCTAGGCCGTGTGA
1 ACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGA
74390932 GGTTACTAAC
Statistics
Matches: 85, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
66 83 0.98
67 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.27, T:0.20
Consensus pattern (66 bp):
ACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGAAAAATGATGAGCATACTAACTTATGA
C
Found at i:74391874 original size:35 final size:35
Alignment explanation
Indices: 74391818--74391945 Score: 98
Period size: 35 Copynumber: 3.6 Consensus size: 35
74391808 TCGACGATAT
* * *
74391818 TAATTGTGAGCCCAGCTCTAGTTGGATGAACAAACAG
1 TAATTGT--GCCCAGCACTAGTCGGATAAACAAACAG
** *
74391855 TAATTGTGCCCAGCACTAGTCGGATAAACTGACGG
1 TAATTGTGCCCAGCACTAGTCGGATAAACAAACAG
* * * **
74391890 T-TTTGTGCCCAGCACTAGTCAGACAAACTGACA-
1 TAATTGTGCCCAGCACTAGTCGGATAAACAAACAG
* *
74391923 AAGATTGTGCCCAGCGCTAGTCG
1 TA-ATTGTGCCCAGCACTAGTCG
74391946 ATTATATCGA
Statistics
Matches: 75, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
34 28 0.37
35 40 0.53
37 7 0.09
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.23
Consensus pattern (35 bp):
TAATTGTGCCCAGCACTAGTCGGATAAACAAACAG
Found at i:74399142 original size:21 final size:21
Alignment explanation
Indices: 74399118--74399288 Score: 105
Period size: 21 Copynumber: 8.1 Consensus size: 21
74399108 TTGACTTTCC
* *
74399118 GTTTAGCTCTCATGAGCTTCT
1 GTTTAACTCTTATGAGCTTCT
* *
74399139 GTTTAACTCATATGAG-TTTT
1 GTTTAACTCTTATGAGCTTCT
* * * *
74399159 CGTTTAACCCTAATG-GGTTTT
1 -GTTTAACTCTTATGAGCTTCT
* * *
74399180 CGTTCAGCTCTTTTGAGCTTCT
1 -GTTTAACTCTTATGAGCTTCT
* * *
74399202 GTTTAACCCTTATGGGTTTCT
1 GTTTAACTCTTATGAGCTTCT
74399223 G-TTAAGCTCTTATGAGCTTCT
1 GTTTAA-CTCTTATGAGCTTCT
* * * *
74399244 GTTCAACCCTTATGGGTTTCT
1 GTTTAACTCTTATGAGCTTCT
* * *
74399265 GTTTAGCACTTATGTGCTTCT
1 GTTTAACTCTTATGAGCTTCT
74399286 GTT
1 GTT
74399289 CAGCCTTAGG
Statistics
Matches: 113, Mismatches: 32, Indels: 10
0.73 0.21 0.06
Matches are distributed among these distances:
20 8 0.07
21 98 0.87
22 7 0.06
ACGTcount: A:0.16, C:0.20, G:0.19, T:0.46
Consensus pattern (21 bp):
GTTTAACTCTTATGAGCTTCT
Found at i:74399219 original size:42 final size:42
Alignment explanation
Indices: 74399135--74399288 Score: 179
Period size: 42 Copynumber: 3.7 Consensus size: 42
74399125 TCTCATGAGC
* * *
74399135 TTCTGTTTAA-CTCATATGAG-TTTTCGTTTAACCCTAATGGGT
1 TTCTG-TTAAGCTCTTATGAGCTTCT-GTTTAACCCTTATGGGT
* *
74399177 TT-TCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGGT
1 TTCT-GTTAAGCTCTTATGAGCTTCTGTTTAACCCTTATGGGT
*
74399219 TTCTGTTAAGCTCTTATGAGCTTCTGTTCAACCCTTATGGGT
1 TTCTGTTAAGCTCTTATGAGCTTCTGTTTAACCCTTATGGGT
* * *
74399261 TTCTGTTTAGCACTTATGTGCTTCTGTT
1 TTCTGTTAAGCTCTTATGAGCTTCTGTT
74399289 CAGCCTTAGG
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
41 4 0.04
42 89 0.92
43 4 0.04
ACGTcount: A:0.16, C:0.19, G:0.18, T:0.47
Consensus pattern (42 bp):
TTCTGTTAAGCTCTTATGAGCTTCTGTTTAACCCTTATGGGT
Found at i:74401019 original size:66 final size:66
Alignment explanation
Indices: 74400947--74401091 Score: 193
Period size: 66 Copynumber: 2.2 Consensus size: 66
74400937 TGCCCATGCA
* *
74400947 CTAGGCCGTGTGAAAAAT-GATGAGTATACTGACTTGTGATACACGGCCAAGCCACACACCGATG
1 CTAGGCCGTGTGAAAAATGGA-GAGTATACTGACTTATGATACACGGCCAAGCCACACACCCATG
74401011 TG
65 TG
* * * * * *
74401013 CTAGGCCATTTGAAAACTGGAGGGTATACTGACTTATGTTACACGGCCAAGTCACACACCCATGT
1 CTAGGCCGTGTGAAAAATGGAGAGTATACTGACTTATGATACACGGCCAAGCCACACACCCATGT
74401078 G
66 G
*
74401079 CTAGGTCGTGTGA
1 CTAGGCCGTGTGA
74401092 GGCTACTAAC
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
66 65 0.97
67 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (66 bp):
CTAGGCCGTGTGAAAAATGGAGAGTATACTGACTTATGATACACGGCCAAGCCACACACCCATGT
G
Found at i:74407527 original size:42 final size:42
Alignment explanation
Indices: 74407418--74407575 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 42
74407408 AGTTCGTACA
* *
74407418 ATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGAAATCAAATA-CG
74407461 ATGCC-ACTATCCCAGACAG-GGTCTTACACGAAATCAAATACG
1 ATGCCAAC-ATCCCAGAC-GTGGTCTTACACGAAATCAAATACG
* * *
74407503 ATGCCAACGTCCTAGACGTAGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAACATCCCAGACGTGGTCTTACACG-AAATCA-AA-TACG
* **
74407547 ATGCCAACGTATCAGACGTGGTCTTACAC
1 ATGCCAACATCCCAGACGTGGTCTTACAC
74407576 AAAAACACAT
Statistics
Matches: 99, Mismatches: 9, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
41 1 0.01
42 26 0.26
43 41 0.41
44 30 0.30
45 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (42 bp):
ATGCCAACATCCCAGACGTGGTCTTACACGAAATCAAATACG
Found at i:74411317 original size:84 final size:83
Alignment explanation
Indices: 74411185--74411351 Score: 316
Period size: 83 Copynumber: 2.0 Consensus size: 83
74411175 ACTTCCGGAA
74411185 GAAATTGAAGAATTTTTTGGGAATCCTACAAGATACATTCGTTCTTTTTTCTCTGATAGATGGTC
1 GAAATTGAAGAATTTTTTGGGAATCCTACAAGATACATTCG-TCTTTTTTCTCTGATAGATGGTC
74411250 AGAACTTCATCTGGGTTCG
65 AGAACTTCATCTGGGTTCG
*
74411269 GAAATTGAAGAATTTTTTGGGAATCCTACAAGATACATTCGTTTTTTTTCTCTGATAGATGGTCA
1 GAAATTGAAGAATTTTTTGGGAATCCTACAAGATACATTCGTCTTTTTTCTCTGATAGATGGTCA
74411334 GAACTTCATCTGGGTTCG
66 GAACTTCATCTGGGTTCG
74411352 AACCCTACTG
Statistics
Matches: 82, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
83 41 0.50
84 41 0.50
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.38
Consensus pattern (83 bp):
GAAATTGAAGAATTTTTTGGGAATCCTACAAGATACATTCGTCTTTTTTCTCTGATAGATGGTCA
GAACTTCATCTGGGTTCG
Found at i:74411337 original size:83 final size:84
Alignment explanation
Indices: 74411185--74411351 Score: 327
Period size: 84 Copynumber: 2.0 Consensus size: 84
74411175 ACTTCCGGAA
74411185 GAAATTGAAGAATTTTTTGGGAATCCTACAAGATACATTCGTTCTTTTTTCTCTGATAGATGGTC
1 GAAATTGAAGAATTTTTTGGGAATCCTACAAGATACATTCGTTCTTTTTTCTCTGATAGATGGTC
74411250 AGAACTTCATCTGGGTTCG
66 AGAACTTCATCTGGGTTCG
74411269 GAAATTGAAGAATTTTTTGGGAATCCTACAAGATACATTCGTT-TTTTTTCTCTGATAGATGGTC
1 GAAATTGAAGAATTTTTTGGGAATCCTACAAGATACATTCGTTCTTTTTTCTCTGATAGATGGTC
74411333 AGAACTTCATCTGGGTTCG
66 AGAACTTCATCTGGGTTCG
74411352 AACCCTACTG
Statistics
Matches: 83, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
83 40 0.48
84 43 0.52
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.38
Consensus pattern (84 bp):
GAAATTGAAGAATTTTTTGGGAATCCTACAAGATACATTCGTTCTTTTTTCTCTGATAGATGGTC
AGAACTTCATCTGGGTTCG
Found at i:74428131 original size:21 final size:21
Alignment explanation
Indices: 74428105--74428145 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
74428095 ATCTGCTCAA
* *
74428105 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
74428126 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
74428146 TTGCTCATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:74441601 original size:28 final size:27
Alignment explanation
Indices: 74441451--74441598 Score: 215
Period size: 28 Copynumber: 5.3 Consensus size: 27
74441441 TGTTTAGCAT
*
74441451 TTAGTGTGCGAGACATTAAGTATGGCAC
1 TTAGTGTGCGAGACATTGA-TATGGCAC
* *
74441479 TTAGTGTACAAGACATTGAGTATGGCAC
1 TTAGTGTGCGAGACATTGA-TATGGCAC
74441507 TTAGTGTGCGAGACATTGAATATGGCAC
1 TTAGTGTGCGAGACATTG-ATATGGCAC
74441535 TTAGTGTGCGAGACATTGAATATGGCAC
1 TTAGTGTGCGAGACATTG-ATATGGCAC
*
74441563 TTAGTGTGTGAGACATTTGATATGGCAC
1 TTAGTGTGCGAGACA-TTGATATGGCAC
74441591 TTAGTGTG
1 TTAGTGTG
74441599 TGAAATTTTG
Statistics
Matches: 112, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
28 108 0.96
29 4 0.04
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (27 bp):
TTAGTGTGCGAGACATTGATATGGCAC
Found at i:74445682 original size:6 final size:6
Alignment explanation
Indices: 74445671--74445721 Score: 75
Period size: 6 Copynumber: 8.5 Consensus size: 6
74445661 AGTTTATTTG
* * *
74445671 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTGT GTTTAT TGTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
74445719 TTT
1 TTT
74445722 CTTAGACTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.14, C:0.00, G:0.06, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:74453585 original size:3 final size:3
Alignment explanation
Indices: 74453577--74453881 Score: 141
Period size: 3 Copynumber: 101.3 Consensus size: 3
74453567 TAATTTAATA
* *
74453577 TAT TAT TAT T-T T-T TAT TAT TAT TAT T-T TAC TGT TACT TA- TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TA-T
* * * * *
74453620 TAT TAT CAT TAC TAT TAT TAC TAT TA- TAT TAC TAT TAT TAT T-T TCAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
* * **
74453667 TAT T-T TCAT TAT TAT TAT TAC TAT TAT TAT T-T TCAT TAT CTAC TGC
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT -TAT TAT
** * * * * *
74453713 TAT TATT TAT TAT CGT TAT TAC CAT TAT CAT TAC TAT TACT T-G TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT
* * * **
74453759 T-T TAT GAT TAT GAT TAT TGAT T-T TATT TAT TAT T-T ATAA TAT GGT
1 TAT TAT TAT TAT TAT TAT T-AT TAT TA-T TAT TAT TAT -TAT TAT TAT
* * *
74453804 TGT TAT TAT TAT TAT TCCT TAT TTT CTAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT T-AT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
* *
74453851 TAT TAT TAT T-T TAAT TAC TAT TAC TAT TAT T
1 TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT T
74453882 TCTTTTACTA
Statistics
Matches: 224, Mismatches: 52, Indels: 52
0.68 0.16 0.16
Matches are distributed among these distances:
2 24 0.11
3 171 0.76
4 29 0.13
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:74453763 original size:23 final size:21
Alignment explanation
Indices: 74453737--74453784 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 21
74453727 GTTATTACCA
74453737 TTATCATTACT-ATTACTTGTATT
1 TTATCATTA-TGATTA-TTG-ATT
*
74453760 TTATGATTATGATTATTGATT
1 TTATCATTATGATTATTGATT
74453781 TTAT
1 TTAT
74453785 TTATTATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 7 0.30
22 4 0.17
23 12 0.52
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.58
Consensus pattern (21 bp):
TTATCATTATGATTATTGATT
Found at i:74454005 original size:19 final size:16
Alignment explanation
Indices: 74453966--74454013 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 16
74453956 CTTTCACCTA
74453966 TATTT-GTTTTCTTAT
1 TATTTAGTTTTCTTAT
74453981 TATTTAGTTTTCATTTAT
1 TATTTAGTTTTC--TTAT
*
74453999 CTATTTATTTTTCTT
1 -TATTTAGTTTTCTT
74454014 GCCTACTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
15 5 0.18
16 6 0.21
17 2 0.07
18 4 0.14
19 11 0.39
ACGTcount: A:0.17, C:0.08, G:0.04, T:0.71
Consensus pattern (16 bp):
TATTTAGTTTTCTTAT
Found at i:74457148 original size:27 final size:28
Alignment explanation
Indices: 74457096--74457153 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
74457086 CATATAAACA
* * *
74457096 AATAATAAAATGTGAATTTAATAAT-AT
1 AATAAAAAAATATGAATTTAAGAATAAT
74457123 AATAAAAAAATAT-AATTATAAGAATAAT
1 AATAAAAAAATATGAATT-TAAGAATAAT
74457151 AAT
1 AAT
74457154 TACATAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 4 0.15
27 17 0.65
28 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (28 bp):
AATAAAAAAATATGAATTTAAGAATAAT
Found at i:74457463 original size:19 final size:18
Alignment explanation
Indices: 74457431--74457466 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
74457421 TAATGTATAG
*
74457431 ATAAAAATGTATAATAAT
1 ATAAAAATGCATAATAAT
74457449 ATAAAAATGACATAATAA
1 ATAAAAATG-CATAATAA
74457467 CATATAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.28
Consensus pattern (18 bp):
ATAAAAATGCATAATAAT
Found at i:74457505 original size:132 final size:132
Alignment explanation
Indices: 74457369--74457627 Score: 301
Period size: 132 Copynumber: 2.0 Consensus size: 132
74457359 AATTATTAAC
* * * * * *
74457369 ATATAAATAAAAAAATAAATATATAATACA-AGTTTA-AAACCTTTAATGATAATAATGTATAGA
1 ATATAAATAAAAAAAT-AATATATAATACATAATTAATAAACATATAAT-ATAATAATATATAAA
* * * *
74457432 TAAAAATGTATAATAAT-ATAA-AAATGACATAATAACATATAATATAATTATAATGTATAATAT
64 TAAAAATGTACAATAATAATAATAAATGA-AAAATAACATATAATA-AATAATAATGAATAATAT
74457495 AAAAGT
127 AAAAGT
* * *
74457501 ATATATATATAAAAATAATATATAATATATAATTAATAAACATATAATATAATAATATATAAATA
1 ATATAAATAAAAAAATAATATATAATACATAATTAATAAACATATAATATAATAATATATAAATA
* ** *
74457566 ATAATGTACAATAATAATAATTTATGAAAAATAATATATAATAAATAATAATGAATAATATA
66 AAAATGTACAATAATAATAATAAATGAAAAATAACATATAATAAATAATAATGAATAATATA
74457628 TAATAAAATA
Statistics
Matches: 106, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
131 12 0.11
132 63 0.59
133 27 0.25
134 4 0.04
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (132 bp):
ATATAAATAAAAAAATAATATATAATACATAATTAATAAACATATAATATAATAATATATAAATA
AAAATGTACAATAATAATAATAAATGAAAAATAACATATAATAAATAATAATGAATAATATAAAA
GT
Found at i:74457515 original size:17 final size:15
Alignment explanation
Indices: 74457487--74457561 Score: 56
Period size: 13 Copynumber: 5.3 Consensus size: 15
74457477 AATTATAATG
74457487 TATA-ATATAAAAGTA
1 TATATATATAAAA-TA
74457502 TATATATATAAAA-A
1 TATATATATAAAATA
*
74457516 TA-ATATATAATATA
1 TATATATATAAAATA
74457530 TA-AT-TAATAAACATA
1 TATATAT-ATAAA-ATA
*
74457545 TA-ATATA-ATAATA
1 TATATATATAAAATA
74457558 TATA
1 TATA
74457562 AATAATAATG
Statistics
Matches: 51, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
13 15 0.29
14 15 0.29
15 12 0.24
16 9 0.18
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (15 bp):
TATATATATAAAATA
Found at i:74457518 original size:22 final size:20
Alignment explanation
Indices: 74457440--74457551 Score: 68
Period size: 22 Copynumber: 5.5 Consensus size: 20
74457430 GATAAAAATG
* *
74457440 TATAATAATATAAAAATGACA
1 TATAAT-ATATAAAAATAAAA
* * *
74457461 TAATAACATAT-AATAT-AAT
1 T-ATAATATATAAAAATAAAA
* *
74457480 TATAATGTAT-AATATAAAA
1 TATAATATATAAAAATAAAA
*
74457499 GTATATATATATAAAAATAATA
1 -TATA-ATATATAAAAATAAAA
*
74457521 TATAATATATAATTAATAAACA
1 TATAATATATAA-AAATAAA-A
74457543 TATAATATA
1 TATAATATA
74457552 ATAATATATA
Statistics
Matches: 72, Mismatches: 12, Indels: 13
0.74 0.12 0.13
Matches are distributed among these distances:
18 12 0.17
19 4 0.06
20 16 0.22
21 19 0.26
22 21 0.29
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (20 bp):
TATAATATATAAAAATAAAA
Found at i:74457539 original size:27 final size:27
Alignment explanation
Indices: 74457488--74457646 Score: 102
Period size: 27 Copynumber: 5.9 Consensus size: 27
74457478 ATTATAATGT
*
74457488 ATAATATAAAAGTATAT-A-TATATAAAA
1 ATAATATATAA-TATATAATTA-ATAAAA
74457515 ATAATATATAATATATAATTAATAAACA
1 ATAATATATAATATATAATTAATAAA-A
* *
74457543 TATAATATAATAATATATAAATAAT-AAT
1 -ATAATAT-ATAATATATAATTAATAAAA
* * *
74457571 GT-ACA-ATAATA-ATAATTTATGAAAA
1 ATAATATATAATATATAATTAAT-AAAA
* *
74457596 ATAATATATAATAAATAA-TAAT--GA
1 ATAATATATAATATATAATTAATAAAA
*
74457620 ATAATATATAATAAAATAATTATATAA
1 ATAATATATAAT-ATATAATTA-ATAA
74457647 CATAAAAATA
Statistics
Matches: 105, Mismatches: 12, Indels: 28
0.72 0.08 0.19
Matches are distributed among these distances:
23 7 0.07
24 19 0.18
25 9 0.09
26 11 0.10
27 28 0.27
28 7 0.07
29 9 0.09
30 15 0.14
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (27 bp):
ATAATATATAATATATAATTAATAAAA
Found at i:74457555 original size:37 final size:37
Alignment explanation
Indices: 74457461--74457570 Score: 104
Period size: 34 Copynumber: 3.0 Consensus size: 37
74457451 AAAAATGACA
* * *
74457461 TAAT-AACATATAATATAATTATAATGTATAATATAAAAG
1 TAATAAACATATAATAT-A--ATAATATATAATATATAAT
* *
74457500 T-ATATATATATAA-A-AATAATATATAATATATAAT
1 TAATAAACATATAATATAATAATATATAATATATAAT
74457534 TAATAAACATATAATATAATAATATATAA-ATAATAAT
1 TAATAAACATATAATATAATAATATATAATAT-ATAAT
74457571 GTACAATAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
34 17 0.29
35 10 0.17
36 4 0.07
37 17 0.29
38 3 0.05
39 8 0.14
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (37 bp):
TAATAAACATATAATATAATAATATATAATATATAAT
Found at i:74457561 original size:54 final size:55
Alignment explanation
Indices: 74457447--74457650 Score: 140
Period size: 54 Copynumber: 3.7 Consensus size: 55
74457437 ATGTATAATA
* ** *
74457447 ATATAAAAATGACATA-ATAACATATAATATAATTATAATGTATAATATAAAAGTATATAT
1 ATATAAAAAT-A-ATATATAATATATAAT-TAA-TATAACATATAATATAATA--ATATAT
74457507 ATATAAAAATAATATATAATATATAATTAATA-AACATATAATATAATAATATAT
1 ATATAAAAATAATATATAATATATAATTAATATAACATATAATATAATAATATAT
* * * * * *
74457561 AAATAATAAT-GTACAATAATA-ATAATT--TATGAA-AAATAATAT-ATAATAAAT
1 ATATAAAAATAATA-TATAATATATAATTAATAT-AACATATAATATAATAATATAT
* *
74457612 A-ATAATGAATAATATATAATAAAATAATT-ATATAACATA
1 ATATAA-AAATAATATATAAT-ATATAATTAATATAACATA
74457651 AAAATAAGGT
Statistics
Matches: 120, Mismatches: 14, Indels: 26
0.75 0.09 0.16
Matches are distributed among these distances:
50 4 0.03
51 19 0.16
52 11 0.09
53 18 0.15
54 25 0.21
56 13 0.11
57 2 0.02
58 6 0.05
59 12 0.10
60 10 0.08
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (55 bp):
ATATAAAAATAATATATAATATATAATTAATATAACATATAATATAATAATATAT
Found at i:74457579 original size:17 final size:17
Alignment explanation
Indices: 74457469--74457633 Score: 82
Period size: 17 Copynumber: 9.9 Consensus size: 17
74457459 CATAATAACA
*
74457469 TATAATATAATTATAATG
1 TATAATA-AATAATAATG
*
74457487 TATAATATAA-AAGT-ATA
1 TATAATA-AATAA-TAATG
*
74457504 TATATATAAA-AATAATA
1 TATA-ATAAATAATAATG
* *
74457521 TATAATATATAATTAATA
1 TATAATAAATAA-TAATG
* *
74457539 AACATATAATATAATAA--
1 TATA-ATAA-ATAATAATG
74457556 TAT-ATAAATAATAATG
1 TATAATAAATAATAATG
*
74457572 TACAAT-AATAATAAT-
1 TATAATAAATAATAATG
*
74457587 T-T-ATGAAA-AATAATA
1 TATAAT-AAATAATAATG
74457602 TATAATAAATAATAATG
1 TATAATAAATAATAATG
* *
74457619 AATAATATATAATAA
1 TATAATAAATAATAA
74457634 AATAATTATA
Statistics
Matches: 118, Mismatches: 13, Indels: 33
0.72 0.08 0.20
Matches are distributed among these distances:
13 2 0.02
14 13 0.11
15 8 0.07
16 20 0.17
17 44 0.37
18 21 0.18
19 6 0.05
20 4 0.03
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.36
Consensus pattern (17 bp):
TATAATAAATAATAATG
Found at i:74457583 original size:30 final size:30
Alignment explanation
Indices: 74457470--74457645 Score: 116
Period size: 30 Copynumber: 5.8 Consensus size: 30
74457460 ATAATAACAT
* *
74457470 ATAATATAATTATAATGTATAATATA-AAAGTA
1 ATAATAT-ATAATAAT-AATAATATATAAA-TA
* *
74457502 TATATATATAAAAATAATATATAATATATAATTA
1 -ATA-ATAT-ATAATAATA-ATAATATATAAATA
*
74457536 ATAAACATATAAT-ATAATAATATATAAATA
1 AT-AATATATAATAATAATAATATATAAATA
* * *
74457566 ATAATGTACAATAATAATAATTTATGAAA-A
1 ATAATATATAATAATAATAATATAT-AAATA
*
74457596 ATAATATATAAT-A-AATAATA-ATGAATA
1 ATAATATATAATAATAATAATATATAAATA
*
74457623 AT-ATATAATAA-AATAATTATATA
1 ATAATAT-ATAATAATAATAATATA
74457646 ACATAAAAAT
Statistics
Matches: 116, Mismatches: 16, Indels: 26
0.73 0.10 0.16
Matches are distributed among these distances:
26 6 0.05
27 10 0.09
28 12 0.10
29 9 0.08
30 37 0.32
31 6 0.05
32 4 0.03
33 8 0.07
34 22 0.19
35 2 0.02
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (30 bp):
ATAATATATAATAATAATAATATATAAATA
Found at i:74457633 original size:24 final size:24
Alignment explanation
Indices: 74457501--74457639 Score: 106
Period size: 24 Copynumber: 5.7 Consensus size: 24
74457491 ATATAAAAGT
*
74457501 ATATATATATAAA-AATAATATATA
1 ATATATA-ATAAATAATAATAAATA
* *
74457525 ATATATAATTAATAAACATATAATATA
1 ATATATAATAAAT-AATA-ATAA-ATA
** *
74457552 ATA-ATATATAAATAATAATGTACA
1 ATATATA-ATAAATAATAATAAATA
* *
74457576 ATA-ATAATAATTTATGAA-AAATA
1 ATATATAATAAATAAT-AATAAATA
*
74457599 ATATATAATAAATAATAATGAATA
1 ATATATAATAAATAATAATAAATA
74457623 ATATATAATAAAATAAT
1 ATATATAAT-AAATAAT
74457640 TATATAACAT
Statistics
Matches: 90, Mismatches: 16, Indels: 17
0.73 0.13 0.14
Matches are distributed among these distances:
23 18 0.20
24 40 0.44
25 12 0.13
26 9 0.10
27 11 0.12
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.35
Consensus pattern (24 bp):
ATATATAATAAATAATAATAAATA
Found at i:74459677 original size:210 final size:206
Alignment explanation
Indices: 74459221--74460228 Score: 1020
Period size: 210 Copynumber: 4.8 Consensus size: 206
74459211 AAATCTGCTT
* * * * * *
74459221 CTTTGATTTATTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTT-ATT--T-G-AGATCA
1 CTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTA-AACA
* * * * * *
74459281 TC-TGAGAGTCAAATCTGCTATGTCTTTGATTTGTTCCTTGTAAATACAAGGATACCAAATCATC
65 -CGTGAAAGTCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGTACAAGGATGCCAAATCATC
* * * * * * * *
74459345 TTGGATCTTACTTCGGTCTAAACGTCTAAAGATCAGATCTGCCATGTATCCGCTCCCCATTAAAT
129 TTGGATCTTGCTTCAGTCTAAACGTCTGAAGGTGAGATCTGCTATGTATCTGCTCTCCATTAAA-
*
74459410 GTGGAGATGCCAGA
193 GTAGAGATGCCAGA
* * *
74459424 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTACTTCATCGTAAGCAC
1 CTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
*
74459489 GTGAAAG-CTAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCT
66 GTGAAAGTC-AAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGTACAAGGATGCCAAATCATCT
* * * * *
74459553 TGGATCTTGTTTCAGTCTAATCGTCTGAAGGTCAGATCGATCTACTATGTATCTGCTCTCTATTG
130 TGGATCTTGCTTCAGTCTAAACGTCTGAAGGT--GA--GATCTGCTATGTATCTGCTCTCCATTA
74459618 AAGTAGAGATGCCAGA
191 AAGTAGAGATGCCAGA
*
74459634 CTTTGATTTGTTCTCTGATAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * * ** * **
74459699 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCTGAA-TACAGAGAGATAAGATC-TG
66 GTGAAAGTCAAATCAGCTATGTCTTCGATTTGCTCCTTG-T-AAGTACA-AG-GAT--G-CCAAA
* * *
74459762 TCATCTTGGATC-TGCTTCAG-CATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGAAT-TCC
124 TCATCTTGGATCTTGCTTCAGTC-TAAACGTCTGAAGGTGAGATCTGCTATGTATCTG-CTCTCC
* * *
74459824 ATCAAAGTGGAAATGCCAGA
187 ATTAAAGTAGAGATGCCAGA
* * * * * *
74459844 CTTCGATTTATTCTCTGACAATACAGAGGCGAAAAATCATCTTAGATTTGCTTTATCGTAAACAT
1 CTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
74459909 GTGAAAGTCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGTACAAGGATGCCAAATCATCTT
66 GTGAAAGTCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGTACAAGGATGCCAAATCATCTT
* * * * * * * *
74459974 AGATATTGTTTCAGTCTAATCGTCTGAAGGTCAGATCTGCTATGCATCTGCTCTCTATTGAAGTA
131 GGATCTTGCTTCAGTCTAAACGTCTGAAGGTGAGATCTGCTATGTATCTGCTCTCCATTAAAGTA
74460039 GAGATGCCAGA
196 GAGATGCCAGA
* * * *
74460050 ATTTGATTTGTTCTCTAACAGTACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTGAACAC
1 CTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * * * ** * * **
74460115 GTAAAAGTCAAATTAGCTATATCTTCGATCTGCTCCCCGCTAAATACAAAGA-GATAAATCTGTT
66 GTGAAAGTCAAATCAGCTATGTCTTCGATTTGCTCCTTG-TAAGTACAAGGATGCCAAA-----T
* *
74460179 CATCTTGGATC-TGCTTCAG-CGTGAACATCTGAAGGTGAGATCTGCTATGT
125 CATCTTGGATCTTGCTTCAGTC-TAAACGTCTGAAGGTGAGATCTGCTATGT
74460229 TGCGGCTTAT
Statistics
Matches: 664, Mismatches: 108, Indels: 59
0.80 0.13 0.07
Matches are distributed among these distances:
203 44 0.07
204 3 0.00
205 12 0.02
206 149 0.22
207 98 0.15
208 5 0.01
209 7 0.01
210 263 0.40
211 39 0.06
212 6 0.01
213 4 0.01
214 20 0.03
215 13 0.02
216 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (206 bp):
CTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGTCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGTACAAGGATGCCAAATCATCTT
GGATCTTGCTTCAGTCTAAACGTCTGAAGGTGAGATCTGCTATGTATCTGCTCTCCATTAAAGTA
GAGATGCCAGA
Found at i:74460208 original size:416 final size:419
Alignment explanation
Indices: 74459401--74460228 Score: 1351
Period size: 416 Copynumber: 2.0 Consensus size: 419
74459391 TATCCGCTCC
* * * *
74459401 CCATTAAATGTGGAGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCT
1 CCATCAAATGTGGAAATGCCAGACTTCGATTTATTCTCTGACAATACAGAGACGAAAAATCATCT
*
74459466 TAGATTTACTTCATCGTAAGCACGTGAAAGCTAAATCAGCTATGTCTTCGATTTGCTCCTTGTAA
66 TAGATTTACTTCATCGTAAACACGTGAAAGCTAAATCAGCTATGTCTTCGATTTGCTCCTTGTAA
* *
74459531 GCACAAGGATGCCAAATCATCTTGGATCTTGTTTCAGTCTAATCGTCTGAAGGTCAGATCGATCT
131 GCACAAGGATGCCAAATCATCTTAGATATTGTTTCAGTCTAATCGTCTGAAGGTCA-A-CGATCT
* * * *
74459596 ACTATGTATCTGCTCTCTATTGAAGTAGAGATGCCAGACTTTGATTTGTTCTCTGATAATACAGA
194 ACTATGCATCTGCTCTCTATTGAAGTAGAGATGCCAGAATTTGATTTGTTCTCTAACAATACAGA
*
74459661 GACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATATCTTCG
259 GACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTAAAAGCCAAATCAGCTATATCTTCG
* *
74459726 ATCTGCTCCCCGCTGAATACAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCATAAACAT
324 ATCTGCTCCCCGCTAAATACAAAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCATAAACAT
74459791 CTGAAGGTGAGATCTGCTATGTGTCTGAATT
389 CTGAAGGTGAGATCTGCTATGTGTCTGAATT
*
74459822 CCATCAAA-GTGGAAATGCCAGACTTCGATTTATTCTCTGACAATACAGAGGCGAAAAATCATCT
1 CCATCAAATGTGGAAATGCCAGACTTCGATTTATTCTCTGACAATACAGAGACGAAAAATCATCT
* * *
74459886 TAGATTTGCTTTATCGTAAACATGTGAAAG-TCAAATCAGCTATGTCTTCGATTTGCTCCTTGTA
66 TAGATTTACTTCATCGTAAACACGTGAAAGCT-AAATCAGCTATGTCTTCGATTTGCTCCTTGTA
* *
74459950 AGTACAAGGATGCCAAATCATCTTAGATATTGTTTCAGTCTAATCGTCTGAAGGTC-A-GATCTG
130 AGCACAAGGATGCCAAATCATCTTAGATATTGTTTCAGTCTAATCGTCTGAAGGTCAACGATCTA
*
74460013 CTATGCATCTGCTCTCTATTGAAGTAGAGATGCCAGAATTTGATTTGTTCTCTAACAGTACAGAG
195 CTATGCATCTGCTCTCTATTGAAGTAGAGATGCCAGAATTTGATTTGTTCTCTAACAATACAGAG
* * *
74460078 ACGACAAATCATCTTAGATTTGCTTCATCGTGAACACGTAAAAGTCAAATTAGCTATATCTTCGA
260 ACGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTAAAAGCCAAATCAGCTATATCTTCGA
* *
74460143 TCTGCTCCCCGCTAAATACAAAGAGATAA-ATCTGTTCATCTTGGATCTGCTTCAGCGTGAACAT
325 TCTGCTCCCCGCTAAATACAAAGAGATAAGATCTG-TCATCTTGGATCTGCTTCAGCATAAACAT
74460207 CTGAAGGTGAGATCTGCTATGT
389 CTGAAGGTGAGATCTGCTATGT
74460229 TGCGGCTTAT
Statistics
Matches: 379, Mismatches: 26, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
415 5 0.01
416 202 0.53
418 1 0.00
419 1 0.00
420 163 0.43
421 7 0.02
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.32
Consensus pattern (419 bp):
CCATCAAATGTGGAAATGCCAGACTTCGATTTATTCTCTGACAATACAGAGACGAAAAATCATCT
TAGATTTACTTCATCGTAAACACGTGAAAGCTAAATCAGCTATGTCTTCGATTTGCTCCTTGTAA
GCACAAGGATGCCAAATCATCTTAGATATTGTTTCAGTCTAATCGTCTGAAGGTCAACGATCTAC
TATGCATCTGCTCTCTATTGAAGTAGAGATGCCAGAATTTGATTTGTTCTCTAACAATACAGAGA
CGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTAAAAGCCAAATCAGCTATATCTTCGAT
CTGCTCCCCGCTAAATACAAAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCATAAACATCT
GAAGGTGAGATCTGCTATGTGTCTGAATT
Found at i:74461134 original size:51 final size:51
Alignment explanation
Indices: 74461043--74461142 Score: 119
Period size: 51 Copynumber: 2.0 Consensus size: 51
74461033 ACCCCTTTGG
* * * * * *
74461043 TCACAAGGTGCCCTTTGCGGGTTTTCATCTTGGCCCCTCTTTTTTTTTAAA
1 TCACAAGGCGCCCTTTGCGAGTTTTCACCTTAGACCCTCTTCTTTTTTAAA
* **
74461094 TCACAAGGCGCCTTTTGCGAGTTTTCACCTTAGATTCTCTTCTTTTTTA
1 TCACAAGGCGCCCTTTGCGAGTTTTCACCTTAGACCCTCTTCTTTTTTA
74461143 GACAAAGTAT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.15, C:0.25, G:0.16, T:0.44
Consensus pattern (51 bp):
TCACAAGGCGCCCTTTGCGAGTTTTCACCTTAGACCCTCTTCTTTTTTAAA
Found at i:74485030 original size:3 final size:3
Alignment explanation
Indices: 74485022--74485226 Score: 90
Period size: 3 Copynumber: 65.7 Consensus size: 3
74485012 ATAAAAATGT
* * * *
74485022 ATA ATA AT- ATA AAA ATGA CATA ATA ACA TATA AT- ATA ATT ATA ATGT
1 ATA ATA ATA ATA ATA AT-A -ATA ATA ATA -ATA ATA ATA ATA ATA AT-A
*
74485069 ATA AT- ATA A-A AGT- ATA TATA TATA AAA ATA ATA TATA ATTA ATA
1 ATA ATA ATA ATA A-TA ATA -ATA -ATA ATA ATA ATA -ATA A-TA ATA
*
74485113 ATTA ATA A-A CAT- ATA AT- ATA ATA ATA ATA TATAA ATA ATA AT- GTA
1 A-TA ATA ATA -ATA ATA ATA ATA ATA ATA ATA -AT-A ATA ATA ATA ATA
* *
74485158 A-A ATA ATA ATA ATTT ATGA AAA ATA ATA TATA ATAA ATA ATA ATA ATA
1 ATA ATA ATA ATA A-TA AT-A ATA ATA ATA -ATA AT-A ATA ATA ATA ATA
74485206 TATA ATA TATA ATA A-A ATA AT
1 -ATA ATA -ATA ATA ATA ATA AT
74485227 TATATAACAT
Statistics
Matches: 157, Mismatches: 16, Indels: 58
0.68 0.07 0.25
Matches are distributed among these distances:
2 19 0.12
3 94 0.60
4 41 0.26
5 3 0.02
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:74485044 original size:19 final size:18
Alignment explanation
Indices: 74485012--74485047 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
74485002 TAATGTATAG
*
74485012 ATAAAAATGTATAATAAT
1 ATAAAAATGCATAATAAT
74485030 ATAAAAATGACATAATAA
1 ATAAAAATG-CATAATAA
74485048 CATATAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.28
Consensus pattern (18 bp):
ATAAAAATGCATAATAAT
Found at i:74485096 original size:17 final size:15
Alignment explanation
Indices: 74485068--74485233 Score: 57
Period size: 13 Copynumber: 11.7 Consensus size: 15
74485058 AATTATAATG
74485068 TATA-ATATAAAAGTA
1 TATATATATAAAA-TA
74485083 TATATATATAAAA-A
1 TATATATATAAAATA
74485097 TA-ATATATAATTAATA
1 TATATATATAA--AATA
*
74485113 -AT-TA-AT-AAACA
1 TATATATATAAAATA
*
74485124 TATA-ATATAATA-A
1 TATATATATAAAATA
74485137 TA-ATATAT-AAATA
1 TATATATATAAAATA
*
74485150 -ATA-ATGTAAAATAA
1 TATATATATAAAAT-A
*
74485164 TAATAATTTATGAAAA-A
1 T-AT-ATATAT-AAAATA
74485181 TA-ATATATAATAA-A
1 TATATATATAA-AATA
*
74485195 TA-ATA-ATAATATA
1 TATATATATAAAATA
74485208 TAATATATAATAAAATA
1 T-ATATAT-ATAAAATA
74485225 -AT-TATATAA
1 TATATATATAA
74485234 CATAAAAATA
Statistics
Matches: 117, Mismatches: 9, Indels: 52
0.66 0.05 0.29
Matches are distributed among these distances:
11 3 0.03
12 11 0.09
13 36 0.31
14 25 0.21
15 14 0.12
16 12 0.10
17 10 0.09
18 2 0.02
19 4 0.03
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (15 bp):
TATATATATAAAATA
Found at i:74485120 original size:27 final size:27
Alignment explanation
Indices: 74485090--74485233 Score: 116
Period size: 27 Copynumber: 5.1 Consensus size: 27
74485080 GTATATATAT
74485090 ATAAAAATAATATATAATTAATAATTA
1 ATAAAAATAATATATAATTAATAATTA
*
74485117 ATAAACAT-ATAATATAA-TAATAA-TA
1 ATAAAAATAAT-ATATAATTAATAATTA
* * *
74485142 TATAAATAATAATGTAAAATAATAATAATTT
1 -ATAAA-AATAATATATAAT--TAATAATTA
*
74485173 ATGAAAAATAATATATAATAAATAA-TA
1 AT-AAAAATAATATATAATTAATAATTA
* *
74485200 ATAATATATAATATATAATAAAATAATTA
1 ATAA-AAATAATATATAAT-TAATAATTA
74485229 TATAA
1 -ATAA
74485234 CATAAAAATA
Statistics
Matches: 94, Mismatches: 10, Indels: 23
0.74 0.08 0.18
Matches are distributed among these distances:
25 2 0.02
26 15 0.16
27 35 0.37
28 13 0.14
29 2 0.02
30 23 0.24
31 4 0.04
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (27 bp):
ATAAAAATAATATATAATTAATAATTA
Found at i:74487042 original size:20 final size:20
Alignment explanation
Indices: 74487017--74487054 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
74487007 ATATTTACTC
* *
74487017 TTTAAAAGTAAATATAAAAT
1 TTTAAAAATAAAAATAAAAT
74487037 TTTAAAAATAAAAATAAA
1 TTTAAAAATAAAAATAAA
74487055 TAAAAGTTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (20 bp):
TTTAAAAATAAAAATAAAAT
Found at i:74487669 original size:3 final size:3
Alignment explanation
Indices: 74487663--74487687 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
74487653 GTTGGAGATA
74487663 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
74487688 GCTACTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:74488898 original size:28 final size:29
Alignment explanation
Indices: 74488864--74488919 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
74488854 TATCTGAAAT
74488864 ACTGATA-TCATGGCCCGAAGCCAAATCA
1 ACTGATATTCATGGCCCGAAGCCAAATCA
74488892 ACTGATATTCATGGCCCGAAGCCAAATC
1 ACTGATATTCATGGCCCGAAGCCAAATC
74488920 GGTATAACTC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 7 0.26
29 20 0.74
ACGTcount: A:0.34, C:0.29, G:0.18, T:0.20
Consensus pattern (29 bp):
ACTGATATTCATGGCCCGAAGCCAAATCA
Found at i:74496431 original size:13 final size:13
Alignment explanation
Indices: 74496413--74496439 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
74496403 CCGAAAGAAA
74496413 AACTTTTAACACT
1 AACTTTTAACACT
74496426 AACTTTTAACACT
1 AACTTTTAACACT
74496439 A
1 A
74496440 TGTTTGGCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37
Consensus pattern (13 bp):
AACTTTTAACACT
Found at i:74498334 original size:40 final size:42
Alignment explanation
Indices: 74498264--74498346 Score: 134
Period size: 40 Copynumber: 2.0 Consensus size: 42
74498254 AATATGAATA
* *
74498264 AAAATACAAGTACTTTAATTGATTCACAATGGCAAGTTCCAC
1 AAAATAAAAGTACTTTAATTGATTCACAATGGCAAGTCCCAC
74498306 AAAATAAAAGTAC-TT-ATTGATTCACAATGGCAAGTCCCAC
1 AAAATAAAAGTACTTTAATTGATTCACAATGGCAAGTCCCAC
74498346 A
1 A
74498347 TACCCATAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
40 25 0.64
41 2 0.05
42 12 0.31
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (42 bp):
AAAATAAAAGTACTTTAATTGATTCACAATGGCAAGTCCCAC
Found at i:74500089 original size:31 final size:31
Alignment explanation
Indices: 74500046--74500108 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
74500036 TACAATTTGA
**
74500046 TCATTGAACTATTTGAAAGTTTTTATTTAAG
1 TCATTGAACTATTCAAAAGTTTTTATTTAAG
74500077 TCATT-AATCTATTCAAAAGTTTTTATTTAAG
1 TCATTGAA-CTATTCAAAAGTTTTTATTTAAG
74500108 T
1 T
74500109 TACTAAGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 2 0.07
31 27 0.93
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (31 bp):
TCATTGAACTATTCAAAAGTTTTTATTTAAG
Found at i:74506080 original size:59 final size:57
Alignment explanation
Indices: 74506017--74506204 Score: 159
Period size: 59 Copynumber: 3.2 Consensus size: 57
74506007 ATTTTATTAA
74506017 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCGAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTT-GAATTAT-TTTTATAGT
* * ** * * *
74506076 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAGAATT-TTATTA-A--
1 ATCATATATT-TTA-ATTA--AAA-T-ATAT-TTAATATTAATTATTTGAATTATTTTTATAGT
* * *
74506136 ATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTGAATTAT-TTTTATAGT
74506195 ATCATATATT
1 ATCATATATT
74506205 ATGATTTGAG
Statistics
Matches: 98, Mismatches: 18, Indels: 26
0.69 0.13 0.18
Matches are distributed among these distances:
53 10 0.10
54 9 0.09
55 2 0.02
56 7 0.07
57 1 0.01
58 3 0.03
59 21 0.21
60 11 0.11
61 3 0.03
62 1 0.01
63 7 0.07
64 2 0.02
65 9 0.09
66 12 0.12
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (57 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTGAATTATTTTTATAGT
Found at i:74506131 original size:119 final size:120
Alignment explanation
Indices: 74506006--74506302 Score: 499
Period size: 119 Copynumber: 2.5 Consensus size: 120
74505996 AATTATTTTA
* * *
74506006 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCGAATTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTT
* *
74506070 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATT-AG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGACTATTAAG
*
74506125 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
74506190 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGACTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGACTATTAAG
*
74506245 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
74506303 ATGATTAAAT
Statistics
Matches: 168, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
119 108 0.64
120 54 0.32
121 6 0.04
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGACTATTAAG
Found at i:74506152 original size:18 final size:17
Alignment explanation
Indices: 74506126--74506160 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
74506116 GATTATTAGA
*
74506126 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
74506143 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
74506161 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:74506262 original size:59 final size:58
Alignment explanation
Indices: 74506080--74506262 Score: 139
Period size: 63 Copynumber: 3.1 Consensus size: 58
74506070 TATAGTATCA
*
74506080 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATT-AGAATTTTATTAAAT
1 TATATTATGATTTAAGTAAATTCATATAAGAATATTGA-TATTAAGAATTTTATTAAAT
* * * * *
74506138 TATA-TAT--TTTAATTAAAATAT-ATTTAATAATAATT-ATGTTAA-ATTATCTTT-TATAGTA
1 TATATTATGATTTAAGT-AAAT-TCATATAAGAAT-ATTGATATTAAGA--AT-TTTAT-TA-AA
74506196 T
58 T
*
74506197 CATATATTATGATTTGAGTAAATTCATATAAGAATATTGACTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAGTAAATTCATATAAGAATATTGA-TATTAAGAATTTTATTAAAT
74506258 TATAT
1 TATAT
74506263 ATTTTAATTA
Statistics
Matches: 94, Mismatches: 12, Indels: 37
0.66 0.08 0.26
Matches are distributed among these distances:
55 9 0.10
56 14 0.15
57 10 0.11
58 9 0.10
59 7 0.07
61 6 0.06
62 12 0.13
63 16 0.17
64 10 0.11
65 1 0.01
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.48
Consensus pattern (58 bp):
TATATTATGATTTAAGTAAATTCATATAAGAATATTGATATTAAGAATTTTATTAAAT
Found at i:74506280 original size:16 final size:16
Alignment explanation
Indices: 74506259--74506300 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
74506249 TTATTAAATT
*
74506259 ATATATTTTAATTATA
1 ATATATTTTAATAATA
74506275 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
74506290 AT-TATGTTTAA
1 ATATAT-TTTAA
74506301 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:74506285 original size:15 final size:15
Alignment explanation
Indices: 74506250--74506291 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
74506240 TTAAGAATTT
*
74506250 TATTAAATTAT-ATA
1 TATTTAATTATAATA
74506264 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
74506278 TATTTAATAATAAT
1 TATTTAATTATAAT
74506292 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:74506525 original size:45 final size:44
Alignment explanation
Indices: 74506445--74506534 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 44
74506435 ACCTCTATTC
74506445 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
* *
74506489 CATTCAACCAAACA-ATTGATTTGCTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACA-AGA-TTACTATTACGCCTCTATTCCATTA
74506534 C
1 C
74506535 GCCTCTAATC
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 16 0.38
45 25 0.60
ACGTcount: A:0.33, C:0.29, G:0.06, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
Found at i:74506578 original size:16 final size:16
Alignment explanation
Indices: 74506514--74506570 Score: 105
Period size: 16 Copynumber: 3.6 Consensus size: 16
74506504 TTGATTTGCT
*
74506514 ATTACGCCTCTATTCC
1 ATTACGCCTCTAATCC
74506530 ATTACGCCTCTAATCC
1 ATTACGCCTCTAATCC
74506546 ATTACGCCTCTAATCC
1 ATTACGCCTCTAATCC
74506562 ATTACGCCT
1 ATTACGCCT
74506571 ATATTCCAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.23, C:0.37, G:0.07, T:0.33
Consensus pattern (16 bp):
ATTACGCCTCTAATCC
Found at i:74509659 original size:34 final size:36
Alignment explanation
Indices: 74509615--74509689 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 36
74509605 TGTGAGAAGA
74509615 ATGAAGACTCTAG-TGATGATGAGGTGAATATGGAT
1 ATGAAGACTCTAGATGATGATGAGGTGAATATGGAT
*
74509650 ATGAA-ACTCTAGTAATGATGATGAGGTGAATATGGCT
1 ATGAAGACTCTAG--ATGATGATGAGGTGAATATGGAT
74509687 ATG
1 ATG
74509690 TTTGCAAAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
34 7 0.19
35 5 0.14
37 24 0.67
ACGTcount: A:0.35, C:0.07, G:0.29, T:0.29
Consensus pattern (36 bp):
ATGAAGACTCTAGATGATGATGAGGTGAATATGGAT
Found at i:74510030 original size:21 final size:21
Alignment explanation
Indices: 74510006--74510046 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
74509996 GAATTAAATT
74510006 AATATACATTTGAAGAATTAC
1 AATATACATTTGAAGAATTAC
* * *
74510027 AATATTCCTTTGATGAATTA
1 AATATACATTTGAAGAATTA
74510047 GCTATAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (21 bp):
AATATACATTTGAAGAATTAC
Found at i:74516354 original size:6 final size:6
Alignment explanation
Indices: 74516343--74516386 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
74516333 ATCATGCATG
74516343 CACATA CACATA CACATA CACATA CACATA CACATA CACATA CA
1 CACATA CACATA CACATA CACATA CACATA CACATA CACATA CA
74516387 TCATGTTGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.50, C:0.34, G:0.00, T:0.16
Consensus pattern (6 bp):
CACATA
Found at i:74516880 original size:27 final size:27
Alignment explanation
Indices: 74516850--74516904 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
74516840 CAAGAAGCCT
74516850 AAGATATTTCTCCTATATGTAGGAGGA
1 AAGATATTTCTCCTATATGTAGGAGGA
74516877 AAGATATTTCTCCTATATGTAGGAGGA
1 AAGATATTTCTCCTATATGTAGGAGGA
74516904 A
1 A
74516905 CAAATCCTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.33
Consensus pattern (27 bp):
AAGATATTTCTCCTATATGTAGGAGGA
Found at i:74517474 original size:27 final size:27
Alignment explanation
Indices: 74517435--74517520 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 27
74517425 TTTATACAAA
*
74517435 TAATTCGGTTAATTAGGTTAATTTGGG
1 TAATTCGGTTAATTCGGTTAATTTGGG
* **
74517462 TAATTCGGGTAATTCGAG-TAATTCAGG
1 TAATTCGGTTAATTCG-GTTAATTTGGG
* *
74517489 TAATTCGGTTAATTCGATTAATTTGGT
1 TAATTCGGTTAATTCGGTTAATTTGGG
74517516 TAATT
1 TAATT
74517521 TTATACTTAT
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
27 47 0.98
28 1 0.02
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (27 bp):
TAATTCGGTTAATTCGGTTAATTTGGG
Found at i:74517521 original size:9 final size:9
Alignment explanation
Indices: 74517435--74517520 Score: 86
Period size: 9 Copynumber: 9.6 Consensus size: 9
74517425 TTTATACAAA
74517435 TAATTCGGT
1 TAATTCGGT
*
74517444 TAATTAGGT
1 TAATTCGGT
* *
74517453 TAATTTGGG
1 TAATTCGGT
*
74517462 TAATTCGGG
1 TAATTCGGT
74517471 TAATTCGAG-
1 TAATTCG-GT
74517480 TAATTCAGG-
1 TAATTC-GGT
74517489 TAATTCGGT
1 TAATTCGGT
*
74517498 TAATTCGAT
1 TAATTCGGT
*
74517507 TAATTTGGT
1 TAATTCGGT
74517516 TAATT
1 TAATT
74517521 TTATACTTAT
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
8 2 0.03
9 63 0.94
10 2 0.03
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (9 bp):
TAATTCGGT
Found at i:74522198 original size:26 final size:26
Alignment explanation
Indices: 74522169--74522219 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
74522159 CAAAATTTGA
*
74522169 TGTCAATTTC-TGTTTCTTCATTTTTC
1 TGTCAAATTCTTGTTTCTT-ATTTTTC
*
74522195 TGTCAAATTCTTTTTTCTTATTTTT
1 TGTCAAATTCTTGTTTCTTATTTTT
74522220 TCTATTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.14, C:0.16, G:0.06, T:0.65
Consensus pattern (26 bp):
TGTCAAATTCTTGTTTCTTATTTTTC
Found at i:74526798 original size:58 final size:57
Alignment explanation
Indices: 74526709--74526826 Score: 227
Period size: 58 Copynumber: 2.1 Consensus size: 57
74526699 GTATAGTAAC
74526709 AAATTATAAAAAAATAGTCTTATTGTTTACACTTTCCATAATATAGTCTAATTATAA
1 AAATTATAAAAAAATAGTCTTATTGTTTACACTTTCCATAATATAGTCTAATTATAA
74526766 AAATTATAAAAAAATTAGTCTTATTGTTTACACTTTCCATAATATAGTCTAATTATAA
1 AAATTATAAAAAAA-TAGTCTTATTGTTTACACTTTCCATAATATAGTCTAATTATAA
74526824 AAA
1 AAA
74526827 AATAAGATAT
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
57 14 0.23
58 46 0.77
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (57 bp):
AAATTATAAAAAAATAGTCTTATTGTTTACACTTTCCATAATATAGTCTAATTATAA
Found at i:74526813 original size:29 final size:29
Alignment explanation
Indices: 74526722--74526815 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 29
74526712 TTATAAAAAA
74526722 ATAGTCTTATTGTTTACACTTTCCATAAT
1 ATAGTCTTATTGTTTACACTTTCCATAAT
* * * * * * * *
74526751 ATAGTCTAATT-ATAAAAATTAT-AAAAAA
1 ATAGTCTTATTGTTTACACTT-TCCATAAT
74526779 ATTAGTCTTATTGTTTACACTTTCCATAAT
1 A-TAGTCTTATTGTTTACACTTTCCATAAT
74526809 ATAGTCT
1 ATAGTCT
74526816 AATTATAAAA
Statistics
Matches: 45, Mismatches: 16, Indels: 8
0.65 0.23 0.12
Matches are distributed among these distances:
28 9 0.20
29 27 0.60
30 9 0.20
ACGTcount: A:0.37, C:0.13, G:0.06, T:0.44
Consensus pattern (29 bp):
ATAGTCTTATTGTTTACACTTTCCATAAT
Found at i:74532492 original size:78 final size:77
Alignment explanation
Indices: 74532386--74532700 Score: 402
Period size: 78 Copynumber: 4.1 Consensus size: 77
74532376 ACGAGAAATT
* * * * * * *
74532386 AAAA-AGTAAAATAAAAAAATTGTTTTGGGCTTGATTTCCGTCGTTCCACGATTTTATTCTAAAT
1 AAAAGAGTAAAAT--AAAAATCGTTTTGGGATCGATTCCCGCCGTTCAACGATTTTATTCCAAAT
74532450 TTGTTTTATTTCCAA
64 TTGTTTTATTTCC-A
* * *
74532465 AAAACGAGTAAAAT-AAAACCGTTTTGGGATCGATTCCAGTCGTTCAACGATTTTATTCCAAATT
1 AAAA-GAGTAAAATAAAAATCGTTTTGGGATCGATTCCCGCCGTTCAACGATTTTATTCCAAATT
74532529 TGTTTTATTTCCA
65 TGTTTTATTTCCA
*
74532542 AAAAGAAGTAAAATAAAAATCGTTTTGGGATCGATTCCCGCCGTTCAATGATTTTATTCCAAATT
1 AAAAG-AGTAAAATAAAAATCGTTTTGGGATCGATTCCCGCCGTTCAACGATTTTATTCCAAATT
74532607 T-TTTTATTTCCA
65 TGTTTTATTTCCA
* ** * * *
74532619 AAAGTGAGTAAAATAAAAATCGTTTCAGGATTGATTCCCACCATTCAACGATTTTATTCCAAATT
1 AAA-AGAGTAAAATAAAAATCGTTTTGGGATCGATTCCCGCCGTTCAACGATTTTATTCCAAATT
74532684 TGTTTTATTTCCA
65 TGTTTTATTTCCA
74532697 AAAA
1 AAAA
74532701 TGAGAAATTA
Statistics
Matches: 210, Mismatches: 20, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
76 1 0.00
77 81 0.39
78 116 0.55
79 4 0.02
81 8 0.04
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (77 bp):
AAAAGAGTAAAATAAAAATCGTTTTGGGATCGATTCCCGCCGTTCAACGATTTTATTCCAAATTT
GTTTTATTTCCA
Found at i:74532666 original size:155 final size:157
Alignment explanation
Indices: 74532306--74532700 Score: 438
Period size: 155 Copynumber: 2.4 Consensus size: 157
74532296 TAAAAATAGG
* *
74532306 TAAAATCTGTTTCAGGATTGATTCCCACCGTTCAACGGGTTTTATTCCATTAATTTAATTTTATT
1 TAAAATC-GTTTCAGGATTGATTCCCACCGTTCAAC-GATTTTATTCCA--AATTT-GTTTTATT
* * * * * *
74532371 TCCAAACGAGAAATTAAAAAGTAAAATAAAAAAATTGTTTTGGGCTTGATTTCCGTCGTTCCACG
61 T-C---C---AAA--AAAAAGTAAAAT-AAAAAATCGTTTTGGGATCGATTCCCGCCGTTCAACG
*
74532436 ATTTTATTCTAAATTTGTTTTATTTCCAAAAAACGAGTAAAA
116 ATTTTATTCCAAATTTGTTTTATTTCCAAAAAACGAGTAAAA
* ** * *
74532478 TAAAACCGTTTTGGGATCGATT-CCAGTCGTTCAACGATTTTATTCCAAATTTGTTTTATTTCCA
1 TAAAATCGTTTCAGGATTGATTCCCA-CCGTTCAACGATTTTATTCCAAATTTGTTTTATTTCCA
* *
74532542 AAAAGAAGTAAAAT-AAAAATCGTTTTGGGATCGATTCCCGCCGTTCAATGATTTTATTCCAAAT
65 AAAAAAAGTAAAATAAAAAATCGTTTTGGGATCGATTCCCGCCGTTCAACGATTTTATTCCAAAT
**
74532606 TT-TTTTATTTCC-AAAAGTGAGTAAAA
130 TTGTTTTATTTCCAAAAAACGAGTAAAA
*
74532632 TAAAAATCGTTTCAGGATTGATTCCCACCATTCAACGATTTTATTCCAAATTTGTTTTATTTCCA
1 T-AAAATCGTTTCAGGATTGATTCCCACCGTTCAACGATTTTATTCCAAATTTGTTTTATTTCCA
74532697 AAAA
65 AAAA
74532701 TGAGAAATTA
Statistics
Matches: 196, Mismatches: 24, Indels: 23
0.81 0.10 0.09
Matches are distributed among these distances:
154 13 0.07
155 67 0.34
156 47 0.24
158 11 0.06
160 3 0.02
163 1 0.01
166 1 0.01
167 8 0.04
168 5 0.03
170 14 0.07
171 20 0.10
172 6 0.03
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (157 bp):
TAAAATCGTTTCAGGATTGATTCCCACCGTTCAACGATTTTATTCCAAATTTGTTTTATTTCCAA
AAAAAAGTAAAATAAAAAATCGTTTTGGGATCGATTCCCGCCGTTCAACGATTTTATTCCAAATT
TGTTTTATTTCCAAAAAACGAGTAAAA
Found at i:74532786 original size:86 final size:87
Alignment explanation
Indices: 74532696--74532862 Score: 284
Period size: 86 Copynumber: 1.9 Consensus size: 87
74532686 TTTTATTTCC
* * *
74532696 AAAAATGAGAAATTAAATTATATAAAATCTGTTTCGAGATTTATTCCCATCGTTTAATAAGA-TT
1 AAAAATGAGAAATTAAATAAAATAAAATCTGTTTCGAGATTTATTCCCACCGTTTAATAAGATTT
74532760 TATTTGAT-TTGATTTTGTTGCT
66 TATTTGATATTG-TTTTGTTGCT
74532782 AAAAATGAGAAATTAAATAAAATAAAATCTGTTTCGAGATTTATTCCCACCGTTTAATAAGATTT
1 AAAAATGAGAAATTAAATAAAATAAAATCTGTTTCGAGATTTATTCCCACCGTTTAATAAGATTT
74532847 TATTTGATATTGTTTT
66 TATTTGATATTGTTTT
74532863 ATTTCCAAAT
Statistics
Matches: 76, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
86 59 0.78
87 14 0.18
88 3 0.04
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.43
Consensus pattern (87 bp):
AAAAATGAGAAATTAAATAAAATAAAATCTGTTTCGAGATTTATTCCCACCGTTTAATAAGATTT
TATTTGATATTGTTTTGTTGCT
Found at i:74532933 original size:57 final size:59
Alignment explanation
Indices: 74532845--74532967 Score: 223
Period size: 57 Copynumber: 2.1 Consensus size: 59
74532835 TTAATAAGAT
*
74532845 TTTATTTGATATTGTTTTATTTCCAAATAGAGACGTAATCAAATAATTCTATTTC-GG-
1 TTTATTCGATATTGTTTTATTTCCAAATAGAGACGTAATCAAATAATTCTATTTCGGGA
74532902 TTTATTCGATATTGTTTTATTTCCAAATAGAGACGTAATCAAATAATTCTATTTCGGGA
1 TTTATTCGATATTGTTTTATTTCCAAATAGAGACGTAATCAAATAATTCTATTTCGGGA
74532961 TTTATTC
1 TTTATTC
74532968 TTTCCGTTTA
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
57 54 0.86
58 2 0.03
59 7 0.11
ACGTcount: A:0.31, C:0.11, G:0.12, T:0.46
Consensus pattern (59 bp):
TTTATTCGATATTGTTTTATTTCCAAATAGAGACGTAATCAAATAATTCTATTTCGGGA
Found at i:74537328 original size:15 final size:15
Alignment explanation
Indices: 74537292--74537334 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
74537282 TTATATTAAT
74537292 ATTG-ATTATTAAAA
1 ATTGAATTATTAAAA
74537306 A-TGTAATTATTAAAA
1 ATTG-AATTATTAAAA
*
74537321 ATTGAATTTTTAAA
1 ATTGAATTATTAAA
74537335 TAAACTCACA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 2 0.08
14 1 0.04
15 20 0.80
16 2 0.08
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (15 bp):
ATTGAATTATTAAAA
Found at i:74537974 original size:17 final size:16
Alignment explanation
Indices: 74537943--74537986 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
74537933 AATCTATAGT
74537943 TATTAAATATTATTCA
1 TATTAAATATTATTCA
*
74537959 TATTAATATTTTATTCA
1 TATTAA-ATATTATTCA
74537976 -ATTAAA-ATTAT
1 TATTAAATATTAT
74537987 CACATTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 4 0.16
15 1 0.04
16 11 0.44
17 9 0.36
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (16 bp):
TATTAAATATTATTCA
Found at i:74538113 original size:19 final size:19
Alignment explanation
Indices: 74538089--74538133 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
74538079 CAATAAAATG
74538089 TTAGAATGTTATCTAAAAC
1 TTAGAATGTTATCTAAAAC
74538108 TTAGAATGTTATCTAAAAC
1 TTAGAATGTTATCTAAAAC
74538127 TTAGAAT
1 TTAGAAT
74538134 AATTAGTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (19 bp):
TTAGAATGTTATCTAAAAC
Found at i:74543801 original size:14 final size:14
Alignment explanation
Indices: 74543779--74543816 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
74543769 TCTAGTTAGC
*
74543779 AAATTTAAAATTTA
1 AAATATAAAATTTA
74543793 AAATATAAAATTTA
1 AAATATAAAATTTA
74543807 ATAA-ATAAAA
1 A-AATATAAAA
74543817 AATCTAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 20 0.91
15 2 0.09
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
AAATATAAAATTTA
Found at i:74544755 original size:25 final size:25
Alignment explanation
Indices: 74544713--74544761 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
74544703 ATTCAAAAAA
* * *
74544713 TTTATAAAAATTCCAAAATTTATAT
1 TTTAAAAAAATTACAAAAATTATAT
*
74544738 TTTAAAAAAATTATAAAAATTATA
1 TTTAAAAAAATTACAAAAATTATA
74544762 AAAATCTAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (25 bp):
TTTAAAAAAATTACAAAAATTATAT
Found at i:74545292 original size:13 final size:13
Alignment explanation
Indices: 74545261--74545292 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
74545251 AGAGAGAAGA
74545261 TTAAGAGAGAGTT
1 TTAAGAGAGAGTT
74545274 TT--GAGAGAGTT
1 TTAAGAGAGAGTT
74545285 TTAAGAGA
1 TTAAGAGA
74545293 TTTTAGTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 4
0.81 0.00 0.19
Matches are distributed among these distances:
11 11 0.65
13 6 0.35
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (13 bp):
TTAAGAGAGAGTT
Found at i:74548020 original size:43 final size:41
Alignment explanation
Indices: 74547930--74548029 Score: 105
Period size: 43 Copynumber: 2.4 Consensus size: 41
74547920 TGAGACCATA
* * *
74547930 TCTGGGACATTGGCATCGTATTTGATTCGTGTAAGACCCTG
1 TCTGGGACAGTGGCATCATATTTGATTCATGTAAGACCCTG
* *
74547971 TTTGGGATAGTGGCATCAATATTTGATTACATGTAAGACCAC-G
1 TCTGGGACAGTGGCATC-ATATTTGATT-CATGTAAGACC-CTG
74548014 TCTGGGAC-GTTGGCAT
1 TCTGGGACAG-TGGCAT
74548030 TGTATGAGCT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
41 14 0.29
42 10 0.21
43 23 0.48
44 1 0.02
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (41 bp):
TCTGGGACAGTGGCATCATATTTGATTCATGTAAGACCCTG
Found at i:74555995 original size:19 final size:18
Alignment explanation
Indices: 74555973--74556036 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 18
74555963 TATGTAAGTA
74555973 AAAATTCATTAAAAATTAT
1 AAAATTCA-TAAAAATTAT
* *
74555992 AAAAATCATAAAATTTATT
1 AAAATTCATAAAAATTA-T
* *
74556011 ATAATTTATAAAATATTAT
1 AAAATTCATAAAA-ATTAT
74556030 GAAAATT
1 -AAAATT
74556037 ATTATTTAAT
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
18 8 0.23
19 19 0.54
20 8 0.23
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (18 bp):
AAAATTCATAAAAATTAT
Found at i:74555996 original size:9 final size:9
Alignment explanation
Indices: 74555971--74556038 Score: 55
Period size: 9 Copynumber: 7.1 Consensus size: 9
74555961 ATTATGTAAG
74555971 TAAAAATTCA
1 TAAAAATT-A
74555981 TTAAAAATTA
1 -TAAAAATTA
*
74555991 TAAAAATCA
1 TAAAAATTA
*
74556000 TAAAATTTA
1 TAAAAATTA
* *
74556009 TTATAATTTA
1 -TAAAAATTA
74556019 TAAAATATTA
1 TAAAA-ATTA
*
74556029 TGAAAATTA
1 TAAAAATTA
74556038 T
1 T
74556039 TATTTAATTT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
9 24 0.50
10 16 0.33
11 8 0.17
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (9 bp):
TAAAAATTA
Found at i:74556004 original size:29 final size:28
Alignment explanation
Indices: 74555973--74556040 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
74555963 TATGTAAGTA
74555973 AAAATTCATTAAAAATTATAAAA-ATCAT
1 AAAATT-ATTAAAAATTATAAAATATCAT
* * *
74556001 AAAATTTATTATAATTTATAAAATATTAT
1 AAAA-TTATTAAAAATTATAAAATATCAT
74556030 GAAAATTATTA
1 -AAAATTATTA
74556041 TTTAATTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
28 18 0.53
29 12 0.35
30 4 0.12
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (28 bp):
AAAATTATTAAAAATTATAAAATATCAT
Found at i:74556009 original size:18 final size:20
Alignment explanation
Indices: 74555971--74556040 Score: 58
Period size: 20 Copynumber: 3.6 Consensus size: 20
74555961 ATTATGTAAG
74555971 TAAAAATTCATTAAAAATTA
1 TAAAAATTCATTAAAAATTA
*
74555991 TAAAAA-TCA-TAAAATTTA
1 TAAAAATTCATTAAAAATTA
* * *
74556009 TTATAATTTA-TAAAATATTA
1 TAAAAATTCATTAAAA-ATTA
*
74556029 TGAAAATT-ATTA
1 TAAAAATTCATTA
74556041 TTTAATTTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
18 12 0.30
19 11 0.28
20 17 0.43
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (20 bp):
TAAAAATTCATTAAAAATTA
Found at i:74556125 original size:19 final size:20
Alignment explanation
Indices: 74556093--74556130 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
74556083 ATTTTTCTAA
74556093 AAAAAATTATTAAAAATATT
1 AAAAAATTATTAAAAATATT
*
74556113 AAAAAGTTA-TAAAAATAT
1 AAAAAATTATTAAAAATAT
74556131 ATAACTCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (20 bp):
AAAAAATTATTAAAAATATT
Found at i:74557728 original size:30 final size:30
Alignment explanation
Indices: 74557694--74557756 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
74557684 GCTTAACAAG
*
74557694 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* *
74557724 CAAATGCCTTTAAAATAATAATAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
74557754 CAA
1 CAA
74557757 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:74558238 original size:14 final size:14
Alignment explanation
Indices: 74558219--74558245 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
74558209 ATTTTTATCT
74558219 TCATTTTTAAAATA
1 TCATTTTTAAAATA
74558233 TCATTTTTAAAAT
1 TCATTTTTAAAAT
74558246 TTTCAATCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (14 bp):
TCATTTTTAAAATA
Found at i:74561880 original size:308 final size:308
Alignment explanation
Indices: 74561322--74561943 Score: 1235
Period size: 308 Copynumber: 2.0 Consensus size: 308
74561312 ATGGAGCTGA
*
74561322 AAATTTAAGGGTGTCACTGGAGTCGCCCTAATGTGGCTGAGTACTGGATGGAGGCTACTAAGAGG
1 AAATTTAAGGGTGTCACTGGAGTCGCCCTAATGTGGCTGAGTACTGAATGGAGGCTACTAAGAGG
74561387 ATAATGGATGATTTAGACTGTACCCCTAAGTAGAAATTGAGGGGTGCTGTCTCGTTGCTTCGCAA
66 ATAATGGATGATTTAGACTGTACCCCTAAGTAGAAATTGAGGGGTGCTGTCTCGTTGCTTCGCAA
74561452 TGAGGCCTATTAGTGGTGGCTGACCGCTAAGGAGGGCACTCAGCCCGACCGTCTGTCTTGGTAGT
131 TGAGGCCTATTAGTGGTGGCTGACCGCTAAGGAGGGCACTCAGCCCGACCGTCTGTCTTGGTAGT
74561517 TCTTTAAGTCTACCTTCCAAAGGAAGTATGTGGGAGCAAGTTACATCGATGCTCGTAGAAGTGGG
196 TCTTTAAGTCTACCTTCCAAAGGAAGTATGTGGGAGCAAGTTACATCGATGCTCGTAGAAGTGGG
74561582 TTTTTGAACCTCACTCAGGGAGATCGATCAATGGTTAAGTAAGAGGCC
261 TTTTTGAACCTCACTCAGGGAGATCGATCAATGGTTAAGTAAGAGGCC
74561630 AAATTTAAGGGTGTCACTGGAGTCGCCCTAATGTGGCTGAGTACTGAATGGAGGCTACTAAGAGG
1 AAATTTAAGGGTGTCACTGGAGTCGCCCTAATGTGGCTGAGTACTGAATGGAGGCTACTAAGAGG
74561695 ATAATGGATGATTTAGACTGTACCCCTAAGTAGAAATTGAGGGGTGCTGTCTCGTTGCTTCGCAA
66 ATAATGGATGATTTAGACTGTACCCCTAAGTAGAAATTGAGGGGTGCTGTCTCGTTGCTTCGCAA
74561760 TGAGGCCTATTAGTGGTGGCTGACCGCTAAGGAGGGCACTCAGCCCGACCGTCTGTCTTGGTAGT
131 TGAGGCCTATTAGTGGTGGCTGACCGCTAAGGAGGGCACTCAGCCCGACCGTCTGTCTTGGTAGT
74561825 TCTTTAAGTCTACCTTCCAAAGGAAGTATGTGGGAGCAAGTTACATCGATGCTCGTAGAAGTGGG
196 TCTTTAAGTCTACCTTCCAAAGGAAGTATGTGGGAGCAAGTTACATCGATGCTCGTAGAAGTGGG
74561890 TTTTTGAACCTCACTCAGGGAGATCGATCAATGGTTAAGTAAGAGGCC
261 TTTTTGAACCTCACTCAGGGAGATCGATCAATGGTTAAGTAAGAGGCC
74561938 AAATTT
1 AAATTT
74561944 TTTAGACTGA
Statistics
Matches: 313, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
308 313 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (308 bp):
AAATTTAAGGGTGTCACTGGAGTCGCCCTAATGTGGCTGAGTACTGAATGGAGGCTACTAAGAGG
ATAATGGATGATTTAGACTGTACCCCTAAGTAGAAATTGAGGGGTGCTGTCTCGTTGCTTCGCAA
TGAGGCCTATTAGTGGTGGCTGACCGCTAAGGAGGGCACTCAGCCCGACCGTCTGTCTTGGTAGT
TCTTTAAGTCTACCTTCCAAAGGAAGTATGTGGGAGCAAGTTACATCGATGCTCGTAGAAGTGGG
TTTTTGAACCTCACTCAGGGAGATCGATCAATGGTTAAGTAAGAGGCC
Found at i:74566866 original size:10 final size:10
Alignment explanation
Indices: 74566853--74566880 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
74566843 CCCTTTTCCA
74566853 TCATCTCTAC
1 TCATCTCTAC
74566863 TCATCTCTAC
1 TCATCTCTAC
74566873 TCATCTCT
1 TCATCTCT
74566881 GTATTTGGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.18, C:0.39, G:0.00, T:0.43
Consensus pattern (10 bp):
TCATCTCTAC
Done.