Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 225 of 344
Found at i:74579988 original size:37 final size:36
Alignment explanation
Indices: 74579947--74580046 Score: 103
Period size: 37 Copynumber: 2.7 Consensus size: 36
74579937 TAAACACTAG
* *
74579947 TCAGTATAATAGTAAAATTTGCTCTGTTGAG-TTCCAT
1 TCAGTATAA-AGTAAGATTTGCTCGGTTGAGCTT-CAT
* * *
74579984 TCAGTATAACGATATGACTTGCTCGGTTGAGCTTCAT
1 TCAGTATAAAG-TAAGATTTGCTCGGTTGAGCTTCAT
74580021 TCAGTATAACAGTAAGATTTGGCTCG
1 TCAGTATAA-AGTAAGATTT-GCTCG
74580047 ATAGAGCCTT
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
36 1 0.02
37 42 0.82
38 8 0.16
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (36 bp):
TCAGTATAAAGTAAGATTTGCTCGGTTGAGCTTCAT
Found at i:74587236 original size:15 final size:17
Alignment explanation
Indices: 74587218--74587249 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
74587208 TAGCATAATT
74587218 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
74587233 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
74587250 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:74591038 original size:41 final size:41
Alignment explanation
Indices: 74590993--74591090 Score: 180
Period size: 41 Copynumber: 2.4 Consensus size: 41
74590983 AATGGGCCTT
74590993 CTCACACAAGCT-TCCAGTCAAGACGTAGCTACTTGGTGCTG
1 CTCACACAAGCTGT-CAGTCAAGACGTAGCTACTTGGTGCTG
74591034 CTCACACAAGCTGTCAGTCAAGACGTAGCTACTTGGTGCTG
1 CTCACACAAGCTGTCAGTCAAGACGTAGCTACTTGGTGCTG
74591075 CTCACACAAGCTGTCA
1 CTCACACAAGCTGTCA
74591091 AGTAATCGCA
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
41 55 0.98
42 1 0.02
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (41 bp):
CTCACACAAGCTGTCAGTCAAGACGTAGCTACTTGGTGCTG
Found at i:74592072 original size:13 final size:13
Alignment explanation
Indices: 74592054--74592078 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74592044 TATGTGATAT
74592054 GTGTGAAAATTTC
1 GTGTGAAAATTTC
74592067 GTGTGAAAATTT
1 GTGTGAAAATTT
74592079 TATCTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:74593273 original size:42 final size:41
Alignment explanation
Indices: 74593165--74593292 Score: 141
Period size: 42 Copynumber: 3.0 Consensus size: 41
74593155 TTCTGATATG
* * *
74593165 TGATTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGATT
1 TGATTTCGTGTAAGACC-CTGTTTGGGACATTAGCATCGATA
*
74593206 TGAGATTTACGTGTAAGACCATGTTTGGGACATTAGCATCGTATA
1 T--GATTT-CGTGTAAGACCCTGTTTGGGACATTAGCATCG-ATA
* * *
74593251 TGATTTCGTGTAAGACCCTGTTTGGGTCAGTGGCATCGATA
1 TGATTTCGTGTAAGACCCTGTTTGGGACATTAGCATCGATA
74593292 T
1 T
74593293 TTGATAACAT
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
41 5 0.07
42 28 0.38
43 10 0.14
44 28 0.38
45 3 0.04
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCCTGTTTGGGACATTAGCATCGATA
Found at i:74602910 original size:13 final size:13
Alignment explanation
Indices: 74602892--74602918 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
74602882 CCCTCATCTA
74602892 AAGATAAGATATT
1 AAGATAAGATATT
74602905 AAGATAAGATATT
1 AAGATAAGATATT
74602918 A
1 A
74602919 GAAAAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.30
Consensus pattern (13 bp):
AAGATAAGATATT
Found at i:74607945 original size:6 final size:5
Alignment explanation
Indices: 74607927--74607985 Score: 64
Period size: 5 Copynumber: 10.6 Consensus size: 5
74607917 GAAGTCTAAG
74607927 AAAAT AACAAT AAACAT AAAAAT AGAAAT AAAACT AAAAAT AAAAT AAAAT
1 AAAAT AA-AAT AAA-AT -AAAAT A-AAAT AAAA-T -AAAAT AAAAT AAAAT
74607978 AAAAT AAA
1 AAAAT AAA
74607986 TGGACTCAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
5 25 0.52
6 16 0.33
7 7 0.15
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:74607950 original size:12 final size:11
Alignment explanation
Indices: 74607927--74607985 Score: 66
Period size: 12 Copynumber: 5.2 Consensus size: 11
74607917 GAAGTCTAAG
74607927 AAAATAACAATA
1 AAAATAA-AATA
*
74607939 AACATAAAAATA
1 AAAAT-AAAATA
*
74607951 GAAATAAAACTA
1 AAAATAAAA-TA
74607963 AAAATAAAAT-
1 AAAATAAAATA
74607973 AAAATAAAATA
1 AAAATAAAATA
74607984 AA
1 AA
74607986 TGGACTCAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
10 10 0.25
11 7 0.17
12 21 0.52
13 2 0.05
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.17
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:74607950 original size:18 final size:16
Alignment explanation
Indices: 74607927--74607985 Score: 75
Period size: 18 Copynumber: 3.5 Consensus size: 16
74607917 GAAGTCTAAG
74607927 AAAATAACAATAAACATA
1 AAAATAA-AATAAA-ATA
74607945 AAAATAGAAATAAAACTA
1 AAAATA-AAATAAAA-TA
74607963 AAAATAAAATAAAAT-
1 AAAATAAAATAAAATA
74607978 AAAATAAA
1 AAAATAAA
74607986 TGGACTCAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
15 8 0.21
16 1 0.03
17 9 0.23
18 20 0.51
19 1 0.03
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.17
Consensus pattern (16 bp):
AAAATAAAATAAAATA
Found at i:74611618 original size:13 final size:13
Alignment explanation
Indices: 74611596--74611631 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
74611586 GCGTGTGGGC
*
74611596 CCACACGAGCACG
1 CCACATGAGCACG
74611609 CCACATGAGCACG
1 CCACATGAGCACG
74611622 CCACATGAGC
1 CCACATGAGC
74611632 GTGTGGTATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.31, C:0.42, G:0.22, T:0.06
Consensus pattern (13 bp):
CCACATGAGCACG
Found at i:74627686 original size:30 final size:30
Alignment explanation
Indices: 74627652--74627712 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
74627642 CCCCTAGTAC
74627652 AAACTTTGGCAAAATTATCA-TTTTGCCCCT
1 AAACTTTGGCAAAATTA-CACTTTTGCCCCT
* * *
74627682 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
74627712 A
1 A
74627713 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACACTTTTGCCCCT
Found at i:74631377 original size:16 final size:17
Alignment explanation
Indices: 74631345--74631377 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
74631335 CCTTCTCACC
74631345 TTTTCTTTTCTTCCATA
1 TTTTCTTTTCTTCCATA
74631362 TTTTCTTTTC-TCCATA
1 TTTTCTTTTCTTCCATA
74631378 GTCGAACCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTCTTTTCTTCCATA
Found at i:74632507 original size:27 final size:26
Alignment explanation
Indices: 74632435--74632549 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 26
74632425 TGGAGGAAGC
74632435 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
74632462 GTTTCTGGTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTATGCCAC-AATATCT
** *
74632490 GTTCTGGTGGCTCCGCCACAATATTT
1 GTTCTGGTGGCTATGCCACAATATCT
** * *
74632516 GTATCTGGTAACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
74632543 GTTCTGG
1 GTTCTGG
74632550 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 13 0.17
27 38 0.49
28 27 0.35
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:74635955 original size:42 final size:42
Alignment explanation
Indices: 74635896--74635984 Score: 160
Period size: 42 Copynumber: 2.1 Consensus size: 42
74635886 TCCTAATTGG
74635896 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA
*
74635938 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA
*
74635980 TAAAA
1 GAAAA
74635985 ATATACCTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.52, C:0.15, G:0.06, T:0.28
Consensus pattern (42 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA
Found at i:74636031 original size:19 final size:18
Alignment explanation
Indices: 74636009--74636048 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
74635999 TGAATAAAAC
74636009 TTATCTACCTAAATAACAT
1 TTATCTACCTAAATAA-AT
74636028 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
74636046 TTA
1 TTA
74636049 AATTATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:74643039 original size:30 final size:30
Alignment explanation
Indices: 74642998--74643055 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
74642988 TGGCTCATTT
*
74642998 CATCTATAAGAATTTCCATTACCATGATCA
1 CATCTACAAGAATTTCCATTACCATGATCA
74643028 CATCTACAAGAATTTCCATTACCATGAT
1 CATCTACAAGAATTTCCATTACCATGAT
74643056 TATAATCATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (30 bp):
CATCTACAAGAATTTCCATTACCATGATCA
Found at i:74643233 original size:216 final size:215
Alignment explanation
Indices: 74642815--74643241 Score: 692
Period size: 215 Copynumber: 2.0 Consensus size: 215
74642805 GCTCATTTCC
*
74642815 TCTACAAGAATTTCCATTACCATGATTATAATCAGGCTTTTGTGTAATTTTTATAAACCTACACC
1 TCTACAAGAATTTCCATTACCATGATTATAATCAGGCTTTTGTGTAATTTTTATAAACCCACACC
* * * * **
74642880 ACACTTTTAGCTTAAAATCATTATTTTTTTCCACCAATGTTGGCTACCATTTTTTTCTCTCATTT
66 ACACGTTCAGCTTAAAATCATTATTTTTTCCCACCAATATCAGCTACCATTTTTTTCTCTCATTT
74642945 TCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACATATGGTTGGCTCATTTCATCTATAAGAA
131 TCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACATATGGTTGGCTCATTTCATCTATAAGAA
74643010 TTTCCATTACCATGATCACA
196 TTTCCATTACCATGATCACA
* *
74643030 TCTACAAGAATTTCCATTACCATGATTATAATCATGCTTTTGTGTAATTTTTGTAAACCCACACC
1 TCTACAAGAATTTCCATTACCATGATTATAATCAGGCTTTTGTGTAATTTTTATAAACCCACACC
* * * * * *
74643095 TCACGTTCAGCTTAAAATCATTGTTTTTTCCCTCCACTATCAGCTGCCATTTTTTTCCTCTGATT
66 ACACGTTCAGCTTAAAATCATTATTTTTTCCCACCAATATCAGCTACCATTTTTTT-CTCTCATT
*
74643160 TTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAATATATGGTTGGCTCATTTCATCTATAAGA
130 TTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACATATGGTTGGCTCATTTCATCTATAAGA
*
74643225 ATTTCCATTACTATGAT
195 ATTTCCATTACCATGAT
74643242 TATAATAATG
Statistics
Matches: 194, Mismatches: 17, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
215 107 0.55
216 87 0.45
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.42
Consensus pattern (215 bp):
TCTACAAGAATTTCCATTACCATGATTATAATCAGGCTTTTGTGTAATTTTTATAAACCCACACC
ACACGTTCAGCTTAAAATCATTATTTTTTCCCACCAATATCAGCTACCATTTTTTTCTCTCATTT
TCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACATATGGTTGGCTCATTTCATCTATAAGAA
TTTCCATTACCATGATCACA
Found at i:74643397 original size:187 final size:185
Alignment explanation
Indices: 74643028--74643568 Score: 739
Period size: 187 Copynumber: 2.9 Consensus size: 185
74643018 ACCATGATCA
74643028 CATCTACAAGAATTTCCATTACCATGATTATAATCATGCTTTTGTGTAATTTTTGTAAACCCACA
1 CATCTACAAGAATTTCCATTACCATGATTATAATCATGCTTTTGTGTAATTTTTGTAAACCCACA
* * * *
74643093 CC-TCACGTTCAGCTTAAAATCATTGTTTTTTCCCTCCACTATCAGCTGCCATTTTTTTCCTCTG
66 CCAT-ACTTTCAACTTAAAATCATTGTTTTTTCCCTCAACTATCAGCTGCCATTTTTTT-CTCTC
* *
74643157 ATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAATATATGGTTGGCTCATTT
129 ATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTGGCTCATTT
* * * *
74643214 CATCTATAAGAATTTCCATTACTATGATTATAATAATGCTTTTGTGTAATTTTTGTAAACGCACA
1 CATCTACAAGAATTTCCATTACCATGATTATAATCATGCTTTTGTGTAATTTTTGTAAACCCACA
* * *
74643279 CCATACTTTCAACTTAAAATCATTGGTTTTTTCCCTCAATTGTCAGCTACCATTTTTTCTCTCTC
66 CCATACTTTCAACTTAAAATCATT-GTTTTTTCCCTCAACTATCAGCTGCCATTTTTT-TCTCTC
*
74643344 ATTTTCTCTCTTCCCAAACACCATTTTTCTTCTTCAAAACACATGGTTGGCTCATTT
129 ATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTGGCTCATTT
* * * * * * * **
74643401 CGTCTGCAAGAATTTCCATCACGATGATTACAATCATGCTTTCGTGCAATTTTTTGTAAACTTAC
1 CATCTACAAGAATTTCCATTACCATGATTATAATCATGCTTTTGTGTAA-TTTTTGTAAACCCAC
* * * *
74643466 ACCACACTTTCAACTTAAAATCATTG-TTTTTACCT-TACTATC-GATTGCCATTTTTTTCTCTC
65 ACCATACTTTCAACTTAAAATCATTGTTTTTTCCCTCAACTATCAG-CTGCCATTTTTTTCTCTC
* *
74643528 ATTTTCTCTCTTGCCAAACAACATTTTTATTCTTCAAAACA
129 ATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACA
74643569 AAACATCTGG
Statistics
Matches: 315, Mismatches: 35, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
184 45 0.14
185 14 0.04
186 89 0.28
187 129 0.41
188 38 0.12
ACGTcount: A:0.26, C:0.24, G:0.08, T:0.42
Consensus pattern (185 bp):
CATCTACAAGAATTTCCATTACCATGATTATAATCATGCTTTTGTGTAATTTTTGTAAACCCACA
CCATACTTTCAACTTAAAATCATTGTTTTTTCCCTCAACTATCAGCTGCCATTTTTTTCTCTCAT
TTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTGGCTCATTT
Found at i:74646897 original size:24 final size:23
Alignment explanation
Indices: 74646846--74646898 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
74646836 ATAGCTCATG
* * *
74646846 AGTTTTTTTCTAAAAATAGACTA
1 AGTTTTCTTCTAAAAATAAACAA
74646869 AGTTTTCTTCTAAAAATAAACAA
1 AGTTTTCTTCTAAAAATAAACAA
74646892 ATGTTTT
1 A-GTTTT
74646899 AATATGACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 21 0.81
24 5 0.19
ACGTcount: A:0.40, C:0.09, G:0.08, T:0.43
Consensus pattern (23 bp):
AGTTTTCTTCTAAAAATAAACAA
Found at i:74648681 original size:31 final size:30
Alignment explanation
Indices: 74648608--74648681 Score: 80
Period size: 31 Copynumber: 2.5 Consensus size: 30
74648598 AATATTTCCT
* *
74648608 TATTTATTATTAA-AATAAAAATATTACAT
1 TATTTATGATTAATAATAAAAATATTACAA
* *
74648637 TATATATGTTTAATAATACTAAAA-ATTACAA
1 TATTTATGATTAATAATA--AAAATATTACAA
74648668 TATTTATGATTAAT
1 TATTTATGATTAAT
74648682 TATGTTAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
29 10 0.28
30 4 0.11
31 18 0.50
32 4 0.11
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.45
Consensus pattern (30 bp):
TATTTATGATTAATAATAAAAATATTACAA
Found at i:74649000 original size:26 final size:26
Alignment explanation
Indices: 74648949--74649005 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
74648939 ATTTATGTTT
* **
74648949 TTAAATAATATAAGAAAATATTAAAA
1 TTAAAAAATATAAGAAAATAAGAAAA
74648975 TTAAAAAATAT-AGAAAAATAAGAAAA
1 TTAAAAAATATAAG-AAAATAAGAAAA
*
74649001 ATAAA
1 TTAAA
74649006 GGAATAGTGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (26 bp):
TTAAAAAATATAAGAAAATAAGAAAA
Found at i:74649256 original size:23 final size:23
Alignment explanation
Indices: 74649230--74649309 Score: 61
Period size: 23 Copynumber: 3.2 Consensus size: 23
74649220 TTTGGAATTT
74649230 AAATTTTTTATATTTATTTTTAA
1 AAATTTTTTATATTTATTTTTAA
** * *
74649253 AAATTTAATCTCTTTATTTTTCAGAATTTA
1 AAATTTTTTATATTTATTTTT----A---A
74649283 AAATTTTTTATATTTATTTTTAA
1 AAATTTTTTATATTTATTTTTAA
74649306 AAAT
1 AAAT
74649310 CCAAGTTCAA
Statistics
Matches: 42, Mismatches: 8, Indels: 14
0.66 0.12 0.22
Matches are distributed among these distances:
23 22 0.52
26 1 0.02
27 1 0.02
30 18 0.43
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.59
Consensus pattern (23 bp):
AAATTTTTTATATTTATTTTTAA
Found at i:74649684 original size:21 final size:21
Alignment explanation
Indices: 74649654--74649695 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
74649644 TTAAATATTA
74649654 ACTCCCTTAAAGGATACATTC
1 ACTCCCTTAAAGGATACATTC
* *
74649675 ACTCCTTTAAGGGATACATTC
1 ACTCCCTTAAAGGATACATTC
74649696 TTACACCCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (21 bp):
ACTCCCTTAAAGGATACATTC
Found at i:74653037 original size:18 final size:19
Alignment explanation
Indices: 74653014--74653058 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 19
74653004 TCTTTTTCAG
*
74653014 TTTAATTAATTTAAAATT-
1 TTTAATTAAGTTAAAATTA
74653032 TTTAATT-AGTTAAAATTA
1 TTTAATTAAGTTAAAATTA
74653050 TTTAATTAA
1 TTTAATTAA
74653059 AAATTTATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 9 0.38
18 14 0.58
19 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (19 bp):
TTTAATTAAGTTAAAATTA
Found at i:74653207 original size:31 final size:29
Alignment explanation
Indices: 74653172--74653231 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
74653162 GTGACAACGT
74653172 CGTAACAAAACAATAATATATGTGACTAAAA
1 CGTAACAAAAC-A-AATATATGTGACTAAAA
***
74653203 CGTAACATTTCAAATATATGTGACTAAAA
1 CGTAACAAAACAAATATATGTGACTAAAA
74653232 TGTACTATGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 17 0.65
30 1 0.04
31 8 0.31
ACGTcount: A:0.50, C:0.13, G:0.10, T:0.27
Consensus pattern (29 bp):
CGTAACAAAACAAATATATGTGACTAAAA
Found at i:74666016 original size:22 final size:21
Alignment explanation
Indices: 74665991--74666034 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
74665981 TGATAAACTT
74665991 TAATATATA-ATTATATTATTTA
1 TAATATATATATTA-ATT-TTTA
*
74666013 TAATTTATATATTAATTTTTA
1 TAATATATATATTAATTTTTA
74666034 T
1 T
74666035 CCACTTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TAATATATATATTAATTTTTA
Found at i:74670346 original size:79 final size:81
Alignment explanation
Indices: 74670211--74670394 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
74670201 TGAATGATGT
*
74670211 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
74670275 GTGCGAGATACTA-ATT
66 GTGCGAGATACTATA-A
* * * * **
74670291 CTGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
*
74670353 TGTGCGAGTTACTATAA
65 TGTGCGAGATACTATAA
*
74670370 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
74670395 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.64
80 31 0.35
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATAA
Found at i:74670401 original size:40 final size:40
Alignment explanation
Indices: 74670210--74670394 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
74670200 TTGAATGATG
* * * *
74670210 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
74670250 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74670290 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74670329 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
74670370 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74670395 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 34 0.27
40 81 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:74670416 original size:79 final size:79
Alignment explanation
Indices: 74670263--74670427 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
74670253 GGACTAAGAT
* * **
74670263 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
74670328 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
74670342 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
74670405 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
74670421 CCGAAGG
1 CCGAAGG
74670428 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:74678269 original size:79 final size:81
Alignment explanation
Indices: 74678133--74678317 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
74678123 TTGAATGATG
*
74678133 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
74678197 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
74678212 TTCCGGGCTAAG-CCCGAAGGCATTTGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
74678274 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* * *
74678292 ACCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74678318 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.65
80 31 0.34
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:74678324 original size:40 final size:40
Alignment explanation
Indices: 74678133--74678317 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
74678123 TTGAATGATG
* * * *
74678133 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
74678173 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74678213 TCCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74678252 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
74678293 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74678318 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:74678339 original size:79 final size:79
Alignment explanation
Indices: 74678186--74678350 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
74678176 GGACTAAGAT
* * ***
74678186 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAA
*
74678251 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
74678265 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTTGAACGAGTTA-C
* *
74678328 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
74678344 CCGAAGG
1 CCGAAGG
74678351 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:74681254 original size:47 final size:47
Alignment explanation
Indices: 74681186--74681403 Score: 187
Period size: 47 Copynumber: 4.7 Consensus size: 47
74681176 ATCATGGGTT
*
74681186 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACA-GATGAGAGCC
* * * * *
74681232 AGTGTAAGACCATGTCTAGGACATGGAATCGG-CATCAAGACGAGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-C-AGATGAGAGCC
* * * *
74681280 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-AGATGAGAGCC
** * * ***
74681326 AGTGTAAGACCATGTCCAGAACATGGCATCGACTTGAGAT-ATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAGATGA-GAGCC
*
74681373 AGTGTAAGACCATGTCTGGGACACGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
74681404 ACACCCTACC
Statistics
Matches: 135, Mismatches: 29, Indels: 15
0.75 0.16 0.08
Matches are distributed among these distances:
46 32 0.24
47 72 0.53
48 30 0.22
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAGATGAGAGCC
Found at i:74681350 original size:94 final size:94
Alignment explanation
Indices: 74681185--74681356 Score: 256
Period size: 94 Copynumber: 1.8 Consensus size: 94
74681175 TATCATGGGT
* *
74681185 TAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTA
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCCA
*
74681250 GGACATGGAATCGGCATCAAGACGAGTGC
66 GAACATGGAATCGGCATCAAGACGAGTGC
* * * *
74681279 TAGTGTAAGACATGTTTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGAGCCAGTGTAAGACCATGTCC
*
74681343 AGAACATGGCATCG
65 AGAACATGGAATCG
74681357 ACTTGAGATA
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
94 68 0.99
95 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (94 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCCA
GAACATGGAATCGGCATCAAGACGAGTGC
Found at i:74681387 original size:94 final size:94
Alignment explanation
Indices: 74681186--74681395 Score: 246
Period size: 94 Copynumber: 2.2 Consensus size: 94
74681176 ATCATGGGTT
* *
74681186 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTAG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCCAG
* * * *
74681251 GACATGGAATCGGCATCAAGACGAGTGCT
66 AACATGGAATCGACATCAAGACGAGAGCC
* * * *
74681280 AGTGTAAGACATGTTTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCCA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGAGCCAGTGTAAGACCATGTCCA
* ** *
74681344 GAACATGGCATCGAC-TTGAGA-TATGAGCC
65 GAACATGGAATCGACATCAAGACGA-GAGCC
74681373 AGTGTAAGACCATGTCTGGGACA
1 AGTGTAAGA-CATGTCTGGGACA
74681396 CGGCATCGAC
Statistics
Matches: 98, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
92 1 0.01
93 16 0.16
94 80 0.82
95 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCCAG
AACATGGAATCGACATCAAGACGAGAGCC
Found at i:74687888 original size:15 final size:15
Alignment explanation
Indices: 74687860--74687889 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
74687850 TCTTTATAAA
74687860 AAAATTTTGTTTTTG
1 AAAATTTTGTTTTTG
74687875 AAAATCTTTGTTTTT
1 AAAAT-TTTGTTTTT
74687890 TTTGTAAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.27, C:0.03, G:0.10, T:0.60
Consensus pattern (15 bp):
AAAATTTTGTTTTTG
Found at i:74690634 original size:26 final size:26
Alignment explanation
Indices: 74690598--74690705 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
74690588 TGAAATTCTC
*
74690598 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
74690624 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
74690650 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
74690676 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
74690702 ATCA
1 ATCA
74690706 ATTTGTATCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:74694308 original size:17 final size:18
Alignment explanation
Indices: 74694274--74694322 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
74694264 AGTGTGTAGT
* *
74694274 AAAATAAAATAAATAATA
1 AAAACAAAATAAAAAATA
74694292 AAAACAAAA-AAAAAATA
1 AAAACAAAATAAAAAATA
* *
74694309 TAAACTAAATAAAA
1 AAAACAAAATAAAA
74694323 TCACATTGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 14 0.54
18 12 0.46
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (18 bp):
AAAACAAAATAAAAAATA
Found at i:74694814 original size:9 final size:8
Alignment explanation
Indices: 74694781--74694811 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
74694771 TTTGTAGTTT
74694781 TTTTTTCAA
1 TTTTTT-AA
74694790 TTTTTTAA
1 TTTTTTAA
74694798 TTTTTTAA
1 TTTTTTAA
74694806 TTTTTT
1 TTTTTT
74694812 TAAAGAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 16 0.73
9 6 0.27
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTTTAA
Found at i:74701005 original size:32 final size:32
Alignment explanation
Indices: 74700963--74701027 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
74700953 AACTGTGAAA
* *
74700963 TAAAATGGTTACTGAGAGTAACGAGGAAGATG
1 TAAAAGGGTTACTGAGAGTAACGAAGAAGATG
74700995 TAAAAGGGTTACTGAGAGTAACGAAGAAGATG
1 TAAAAGGGTTACTGAGAGTAACGAAGAAGATG
74701027 T
1 T
74701028 GAAATAAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.42, C:0.06, G:0.31, T:0.22
Consensus pattern (32 bp):
TAAAAGGGTTACTGAGAGTAACGAAGAAGATG
Found at i:74705046 original size:22 final size:22
Alignment explanation
Indices: 74705000--74705058 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
74704990 TCAAATTTCA
74705000 AAAATTAAACATAATATAATATTT
1 AAAA-TAAA-ATAATATAATATTT
* *
74705024 AACATAGAAATAA-ATATTATTT
1 AAAATA-AAATAATATAATATTT
74705046 AAAATAAAATAAT
1 AAAATAAAATAAT
74705059 TTTTTTAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 6 0.20
22 13 0.43
23 6 0.20
24 5 0.17
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (22 bp):
AAAATAAAATAATATAATATTT
Found at i:74705145 original size:42 final size:43
Alignment explanation
Indices: 74705091--74705206 Score: 123
Period size: 42 Copynumber: 2.8 Consensus size: 43
74705081 AGCGGCGTGA
* *
74705091 GAAAAGCGCCGCTAAAACTCAT-GTCTTTAGTGGCGTTTGTGT
1 GAAAAGCACCGCTAAAACTCATGGTCTTTAGCGGCGTTTGTGT
** *
74705133 GAAAAGCACCGCTAAAGGTCATGGTCTTTAGCGGCG-TT-TAT
1 GAAAAGCACCGCTAAAACTCATGGTCTTTAGCGGCGTTTGTGT
* * *
74705174 AAAAATGCGCCGCTAAAAGTCATGGT-TTTAGCG
1 GAAAA-GCACCGCTAAAACTCATGGTCTTTAGCG
74705207 ACATTCTTTT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
41 13 0.20
42 39 0.61
43 12 0.19
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (43 bp):
GAAAAGCACCGCTAAAACTCATGGTCTTTAGCGGCGTTTGTGT
Found at i:74714044 original size:23 final size:25
Alignment explanation
Indices: 74714018--74714064 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
74714008 TATCATTCAT
*
74714018 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
74714041 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
74714065 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:74714385 original size:46 final size:46
Alignment explanation
Indices: 74714325--74714589 Score: 323
Period size: 46 Copynumber: 5.9 Consensus size: 46
74714315 TTTGACGTGA
* * * * * *
74714325 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAAGT
** * * *
74714371 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAAGT
* * *
74714417 TGCCATGGTATCTTTCGACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAAGT
74714463 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAAGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAAGT
*
74714509 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAAGT
74714547 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
74714590 GAGAGCACAC
Statistics
Matches: 193, Mismatches: 17, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
38 32 0.17
39 1 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 5 0.03
46 147 0.76
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAAGT
Found at i:74714558 original size:38 final size:38
Alignment explanation
Indices: 74714507--74714579 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
74714497 TTCATATCAA
74714507 GTTGCCATGGTATCTTTCAACCATGGTCTTACACACAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACACAG
74714545 GTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACA
74714580 TTTCATATCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (38 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACACAG
Found at i:74722190 original size:16 final size:16
Alignment explanation
Indices: 74722169--74722200 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
74722159 CTACTTTAGT
*
74722169 GTTGTGTGAATTGTCA
1 GTTGTGTAAATTGTCA
74722185 GTTGTGTAAATTGTCA
1 GTTGTGTAAATTGTCA
74722201 ATTTAAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.06, G:0.28, T:0.44
Consensus pattern (16 bp):
GTTGTGTAAATTGTCA
Found at i:74734402 original size:7 final size:7
Alignment explanation
Indices: 74734390--74734429 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
74734380 GTTATGGGGC
74734390 AGTTAGT
1 AGTTAGT
74734397 AGTTAGT
1 AGTTAGT
74734404 AGTTAGT
1 AGTTAGT
*
74734411 AGTTAAT
1 AGTTAGT
74734418 -GCTTAGT
1 AG-TTAGT
74734425 AGTTA
1 AGTTA
74734430 TTGTAGTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 1 0.03
7 27 0.93
8 1 0.03
ACGTcount: A:0.30, C:0.03, G:0.25, T:0.42
Consensus pattern (7 bp):
AGTTAGT
Found at i:74734414 original size:21 final size:22
Alignment explanation
Indices: 74734390--74734446 Score: 57
Period size: 21 Copynumber: 2.6 Consensus size: 22
74734380 GTTATGGGGC
*
74734390 AGTTAGTAGTTAGTAGTTA-GT
1 AGTTAATAGTTAGTAGTTATGT
74734411 AGTTAAT-GCTTAGTAGTTATTGT
1 AGTTAATAG-TTAGTAGTTA-TGT
*
74734434 AGTT-TTAGTTAGT
1 AGTTAATAGTTAGT
74734447 TAACTGTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
20 1 0.03
21 16 0.53
22 6 0.20
23 7 0.23
ACGTcount: A:0.26, C:0.02, G:0.25, T:0.47
Consensus pattern (22 bp):
AGTTAATAGTTAGTAGTTATGT
Found at i:74735747 original size:20 final size:22
Alignment explanation
Indices: 74735722--74735761 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
74735712 TCCCTACAAG
74735722 AAGTATCGAT-AT-TTTTCAAA
1 AAGTATCGATGATGTTTTCAAA
74735742 AAGTATCGATGATGTTTTCA
1 AAGTATCGATGATGTTTTCA
74735762 TCGCAACGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
21 2 0.11
22 6 0.33
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (22 bp):
AAGTATCGATGATGTTTTCAAA
Found at i:74738187 original size:22 final size:22
Alignment explanation
Indices: 74738162--74738212 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
74738152 AAACAGGGTC
*
74738162 ACACGCCCGTGTGGACATAGGG
1 ACACGCCCGTGTGGAAATAGGG
74738184 ACACGCCCGTGTGGAAATAGGG
1 ACACGCCCGTGTGGAAATAGGG
74738206 ACACGCC
1 ACACGCC
74738213 TGTTTCCTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.25, C:0.29, G:0.33, T:0.12
Consensus pattern (22 bp):
ACACGCCCGTGTGGAAATAGGG
Found at i:74740297 original size:46 final size:47
Alignment explanation
Indices: 74740169--74740381 Score: 179
Period size: 46 Copynumber: 4.5 Consensus size: 47
74740159 AGGCTGACGC
* * * * *
74740169 CATGCCCCTGACATGGTCATACACTAGCTCTCACATATCTG-TGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCT-ACATCTC-GAGGCCGATG
* * *
74740218 CCAGGTCCTAGACATGGTCTTACACT-G-AC-ACATCTCGTA-GCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTACATCTCG-AGGCCGATG
*
74740264 CATGTCCCAGACATGTCTTACATTAGCT-TACATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCGAGGCCGATG
* * * *
74740310 CATGTCCCAGACATGTCTTACACTGGCTCT-CCTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCGAGGCCGATG
*
74740356 CCATGTCCTAGACATGGTCTTACACT
1 -CATGTCCCAGACAT-GTCTTACACT
74740382 GGCACACAAC
Statistics
Matches: 137, Mismatches: 17, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
44 9 0.07
45 15 0.11
46 67 0.49
47 14 0.10
48 11 0.08
49 1 0.01
50 20 0.15
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCGAGGCCGATG
Found at i:74750582 original size:196 final size:197
Alignment explanation
Indices: 74750248--74750639 Score: 671
Period size: 196 Copynumber: 2.0 Consensus size: 197
74750238 GTTATCAAAG
* *
74750248 TATGGAAATTAGGTTATAGATGAATATGCTGAAAATTTAAAATTTATGGTAGAAAACGAAAAGTT
1 TATGGAAATCAGGTTATAGATGAATATGCTAAAAATTTAAAATTTATGGTAGAAAACGAAAAGTT
74750313 GTTGATAGATAAACAACTTTTACAAAGTGATTTTTGATGAAAACATGATTTAGGTACTAAAATGT
66 GTTGATAGATAAACAACTTTTACAAAGTGATTTTTGATGAAAACATGATTTAGGTACTAAAATGT
*
74750378 AAAGTTGTGAAAATTGAAG-AAAAATTCTAAATTTGATAGAAAATATGTGCTGTAAATTCTACAT
131 AAAGTTGTGAAAATTAAAGAAAAAATTCTAAATTTGATAGAAAATATGTGCTGTAAATTCTACAT
74750442 TT
196 TT
* *
74750444 TATGGAAATCAGGTTAT-GAATGAATATGCTAAAAATTTAAAATTTATGGTAGAAAATGAAAGGT
1 TATGGAAATCAGGTTATAG-ATGAATATGCTAAAAATTTAAAATTTATGGTAGAAAACGAAAAGT
* * * *
74750508 TGTTGATAGATAAATAATTTTTACAAAGTGATTTTTGATGAAAATATGGTTTAGGTACTAAAATG
65 TGTTGATAGATAAACAACTTTTACAAAGTGATTTTTGATGAAAACATGATTTAGGTACTAAAATG
*
74750573 TAAAGTTGTGAAAATTAAAGAAAAAATTCTAAATTTTATAGAAAATATGTGCTGTAAATTCTACA
130 TAAAGTTGTGAAAATTAAAGAAAAAATTCTAAATTTGATAGAAAATATGTGCTGTAAATTCTACA
74750638 TT
195 TT
74750640 GAAATTTCGG
Statistics
Matches: 184, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
195 1 0.01
196 138 0.75
197 45 0.24
ACGTcount: A:0.43, C:0.05, G:0.17, T:0.35
Consensus pattern (197 bp):
TATGGAAATCAGGTTATAGATGAATATGCTAAAAATTTAAAATTTATGGTAGAAAACGAAAAGTT
GTTGATAGATAAACAACTTTTACAAAGTGATTTTTGATGAAAACATGATTTAGGTACTAAAATGT
AAAGTTGTGAAAATTAAAGAAAAAATTCTAAATTTGATAGAAAATATGTGCTGTAAATTCTACAT
TT
Found at i:74764032 original size:45 final size:44
Alignment explanation
Indices: 74763953--74764122 Score: 135
Period size: 45 Copynumber: 3.8 Consensus size: 44
74763943 CTGGTTGAAG
* * * * *
74763953 GATGCTATAGTGTTTTTCCACCA-AGGTATTATTCATTCTTGACTT
1 GATGCCATAGTGTCTTTCAACCATA-GTCTTATTCATTC-TAACTT
* * * *
74763998 GATGCCATTGTGTCTTTCAACTATAGTCTTATTCACTGCTAATTT
1 GATGCCATAGTGTCTTTCAACCATAGTCTTATTCA-TTCTAACTT
* * * *
74764043 GATTCCATAGTGTCTTTCAACCATGGTCTTATTCATTTTACATCGT
1 GATGCCATAGTGTCTTTCAACCATAGTCTTATTCATTCTA-A-CTT
* * * *
74764089 GTTGCCATAATGTATTTCAACCATGGTCTTATTC
1 GATGCCATAGTGTCTTTCAACCATAGTCTTATTC
74764123 GTTTGATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
44 3 0.03
45 63 0.63
46 34 0.34
ACGTcount: A:0.22, C:0.20, G:0.14, T:0.44
Consensus pattern (44 bp):
GATGCCATAGTGTCTTTCAACCATAGTCTTATTCATTCTAACTT
Found at i:74764170 original size:45 final size:45
Alignment explanation
Indices: 74764111--74764259 Score: 122
Period size: 45 Copynumber: 3.3 Consensus size: 45
74764101 TATTTCAACC
* * *
74764111 ATGGTCTTATTCGTTTGATTCATGATGCTATAGCGTCTTTCAGCT
1 ATGGTCTTACTCGTTAGATTCATGATGCTATAACGTCTTTCAGCT
* * * *** *
74764156 ATGGTTTTACTCGTTAGAATCGTGATG-TCATAATAACTTTCGGCT
1 ATGGTCTTACTCGTTAGATTCATGATGCT-ATAACGTCTTTCAGCT
* * * * *
74764201 ATGGTCTTATTCATTAAAATT-ATGATGCCATAACGTCTTTTAGCT
1 ATGGTCTTACTCGTT-AGATTCATGATGCTATAACGTCTTTCAGCT
*
74764246 ATGGTTTTACTCGT
1 ATGGTCTTACTCGT
74764260 CTCCGGTATG
Statistics
Matches: 76, Mismatches: 25, Indels: 6
0.71 0.23 0.06
Matches are distributed among these distances:
44 1 0.01
45 72 0.95
46 3 0.04
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.43
Consensus pattern (45 bp):
ATGGTCTTACTCGTTAGATTCATGATGCTATAACGTCTTTCAGCT
Found at i:74769481 original size:25 final size:24
Alignment explanation
Indices: 74769442--74769604 Score: 86
Period size: 25 Copynumber: 6.6 Consensus size: 24
74769432 CATATAACAC
** *
74769442 GAAGCTCATGTGAGCCATGTAATG
1 GAAGCTCATAAGAGCCATATAATG
* *
74769466 GAAAGCTCATAAGAGCCGTA-AGTAG
1 G-AAGCTCATAAGAGCCATATAAT-G
* *
74769491 GAAGCTCATGCA-AGCCAATATCA-G
1 GAAGCTCAT-AAGAGCC-ATATAATG
*
74769515 GAACCTC-TAGAGAGCCAT-TAATCG
1 GAAGCTCATA-AGAGCCATATAAT-G
*
74769539 GCAAGCTCATAAGAGCCAAAT-ATCG
1 G-AAGCTCATAAGAGCCATATAAT-G
* *
74769564 AGAAGCTCGTGAGAGCCATATAATGG
1 -GAAGCTCATAAGAGCCATATAAT-G
*
74769590 GATGCTCATAAGAGC
1 GAAGCTCATAAGAGC
74769605 TAAATAACGG
Statistics
Matches: 104, Mismatches: 21, Indels: 27
0.68 0.14 0.18
Matches are distributed among these distances:
22 2 0.02
23 4 0.04
24 28 0.27
25 63 0.61
26 7 0.07
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.19
Consensus pattern (24 bp):
GAAGCTCATAAGAGCCATATAATG
Found at i:74769611 original size:25 final size:25
Alignment explanation
Indices: 74769543--74769621 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 25
74769533 TAATCGGCAA
* *
74769543 GCTCATAAGAGCCAAAT-ATCGAGAA
1 GCTCATAAGAGCCAAATAAT-GGGAT
* * *
74769568 GCTCGTGAGAGCCATATAATGGGAT
1 GCTCATAAGAGCCAAATAATGGGAT
* *
74769593 GCTCATAAGAGCTAAATAACGGGAT
1 GCTCATAAGAGCCAAATAATGGGAT
74769618 GCTC
1 GCTC
74769622 TTGCGGGCTG
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
25 41 0.95
26 2 0.05
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.20
Consensus pattern (25 bp):
GCTCATAAGAGCCAAATAATGGGAT
Found at i:74774163 original size:8 final size:8
Alignment explanation
Indices: 74774140--74774206 Score: 71
Period size: 8 Copynumber: 8.4 Consensus size: 8
74774130 ATGAATCGGT
74774140 AAAAGCCG
1 AAAAGCCG
* *
74774148 AAATGTCG
1 AAAAGCCG
*
74774156 AAAAGTCG
1 AAAAGCCG
*
74774164 AAAAGCTG
1 AAAAGCCG
*
74774172 AAATGCCG
1 AAAAGCCG
74774180 AAAAGCCG
1 AAAAGCCG
*
74774188 AAATGCCG
1 AAAAGCCG
*
74774196 AAAAGCTG
1 AAAAGCCG
74774204 AAA
1 AAA
74774207 GTTTGGCTAT
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 48 1.00
ACGTcount: A:0.48, C:0.18, G:0.24, T:0.10
Consensus pattern (8 bp):
AAAAGCCG
Found at i:74774174 original size:24 final size:24
Alignment explanation
Indices: 74774140--74774198 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
74774130 ATGAATCGGT
* *
74774140 AAAAGCCGAAATGTCGAAAAGTCG
1 AAAAGCCGAAATGCCGAAAAGCCG
*
74774164 AAAAGCTGAAATGCCGAAAAGCCG
1 AAAAGCCGAAATGCCGAAAAGCCG
*
74774188 AAATGCCGAAA
1 AAAAGCCGAAA
74774199 AGCTGAAAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.47, C:0.19, G:0.24, T:0.10
Consensus pattern (24 bp):
AAAAGCCGAAATGCCGAAAAGCCG
Found at i:74778307 original size:8 final size:8
Alignment explanation
Indices: 74778281--74778323 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
74778271 ATGAATCGGC
*
74778281 AAAAGTCG
1 AAAAGCCG
*
74778289 AAATGCCG
1 AAAAGCCG
*
74778297 AAAAGCTG
1 AAAAGCCG
*
74778305 AAATGCCG
1 AAAAGCCG
74778313 AAAAGCCG
1 AAAAGCCG
74778321 AAA
1 AAA
74778324 GTTTGGCTAC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.49, C:0.19, G:0.23, T:0.09
Consensus pattern (8 bp):
AAAAGCCG
Found at i:74778307 original size:16 final size:16
Alignment explanation
Indices: 74778281--74778323 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
74778271 ATGAATCGGC
*
74778281 AAAAGTCGAAATGCCG
1 AAAAGCCGAAATGCCG
*
74778297 AAAAGCTGAAATGCCG
1 AAAAGCCGAAATGCCG
74778313 AAAAGCCGAAA
1 AAAAGCCGAAA
74778324 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.49, C:0.19, G:0.23, T:0.09
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:74778582 original size:29 final size:29
Alignment explanation
Indices: 74778546--74778632 Score: 102
Period size: 29 Copynumber: 3.0 Consensus size: 29
74778536 TGAAAGTGAC
*
74778546 TGGGCCTAACAGGCTATATAAATGTGATT
1 TGGGCCTAACAGGCCATATAAATGTGATT
** *
74778575 TGGGCCTAATTGGCCATATACATGTGATT
1 TGGGCCTAACAGGCCATATAAATGTGATT
** * *
74778604 TGGGCCTAATGGGCCATATGAATATGATT
1 TGGGCCTAACAGGCCATATAAATGTGATT
74778633 AGGCTTAATG
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (29 bp):
TGGGCCTAACAGGCCATATAAATGTGATT
Found at i:74780988 original size:48 final size:48
Alignment explanation
Indices: 74780943--74781053 Score: 159
Period size: 48 Copynumber: 2.3 Consensus size: 48
74780933 CTTATGGCTC
74780943 GAAGCCAACTCAATGAATCTCACACCAGAAGTACCAATATCATGGCCT
1 GAAGCCAACTCAATGAATCTCACACCAGAAGTACCAATATCATGGCCT
* * * * * * *
74780991 GAATCCAACTCAATGAATCTCGCACCCGAAGTTCTAATATTATAGCCT
1 GAAGCCAACTCAATGAATCTCACACCAGAAGTACCAATATCATGGCCT
74781039 GAAGCCAACTCAATG
1 GAAGCCAACTCAATG
74781054 TAACCTCATG
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.36, C:0.28, G:0.14, T:0.22
Consensus pattern (48 bp):
GAAGCCAACTCAATGAATCTCACACCAGAAGTACCAATATCATGGCCT
Found at i:74782598 original size:34 final size:33
Alignment explanation
Indices: 74782554--74782619 Score: 105
Period size: 34 Copynumber: 2.0 Consensus size: 33
74782544 GGTAGCAGTA
74782554 GCAGTCTGGGCCTGAGCCCATTTCAGTAATAGTG
1 GCAGTCTGGGCCTGAGCCCATTTCAGT-ATAGTG
* *
74782588 GCAGTTTGGGCCTTAGCCCATTTCAGTATAGT
1 GCAGTCTGGGCCTGAGCCCATTTCAGTATAGT
74782620 ATGCAAACAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 5 0.17
34 25 0.83
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (33 bp):
GCAGTCTGGGCCTGAGCCCATTTCAGTATAGTG
Found at i:74789973 original size:14 final size:15
Alignment explanation
Indices: 74789949--74789983 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
74789939 TATATATATT
74789949 ACCATATAAATACTA
1 ACCATATAAATACTA
74789964 ACCATA-AAATACTA
1 ACCATATAAATACTA
74789978 ATCCAT
1 A-CCAT
74789984 GATTAAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
ACCATATAAATACTA
Found at i:74790679 original size:41 final size:41
Alignment explanation
Indices: 74790648--74790888 Score: 324
Period size: 41 Copynumber: 5.9 Consensus size: 41
74790638 CTATATAAAA
* * * * *
74790648 CACCGGCATAAAGCCTGCTAGGCACAAAGCCCG-ATTCATTT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAAT-AATT
* * *
74790689 CACCGGCA-CAAAGCCTGCTAGACATAAAGTCTGAATTAATT
1 CACCGGCATC-AAGCCTGCTAGGCATAAAGCCTGAAATAATT
*
74790730 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
* * *
74790771 CACCGGCATCAAGCCTGCTAGACATAAAGTCTAAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
*
74790812 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
*
74790853 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAA
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAA
74790889 ATCTCATATA
Statistics
Matches: 179, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
41 175 0.98
42 4 0.02
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (41 bp):
CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
Found at i:74791074 original size:62 final size:64
Alignment explanation
Indices: 74791003--74791130 Score: 185
Period size: 64 Copynumber: 2.0 Consensus size: 64
74790993 GCAAACAAAC
*
74791003 ATTCGAACCACATATGT-A-T-AATTTACA-ACATTAAAATTCAGCTCAAAGAA-TTTGTAACCT
1 ATTCGAACCACATATGTAAGTAAAATT-CATACATT-AAATTCAGCTC-AAGAACTTTGTAACCT
74791063 AT
63 AT
74791065 ATTCGAACCACATATGTAAGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
1 ATTCGAACCACATATGTAAGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
74791129 AT
1 AT
74791131 ATATTCGAAC
Statistics
Matches: 60, Mismatches: 1, Indels: 8
0.87 0.01 0.12
Matches are distributed among these distances:
62 17 0.28
63 6 0.10
64 28 0.47
65 9 0.15
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (64 bp):
ATTCGAACCACATATGTAAGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
Found at i:74796820 original size:14 final size:15
Alignment explanation
Indices: 74796796--74796830 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
74796786 TATATATATT
74796796 ACCATATAAATACTA
1 ACCATATAAATACTA
74796811 ACCATA-AAATACTA
1 ACCATATAAATACTA
74796825 ATCCAT
1 A-CCAT
74796831 GATTAAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
ACCATATAAATACTA
Found at i:74797526 original size:41 final size:41
Alignment explanation
Indices: 74797495--74797735 Score: 324
Period size: 41 Copynumber: 5.9 Consensus size: 41
74797485 CTATATAAAA
* * * * *
74797495 CACCGGCATAAAGCCTGCTAGGCACAAAGCCCG-ATTCATTT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAAT-AATT
* * *
74797536 CACCGGCA-CAAAGCCTGCTAGACATAAAGTCTGAATTAATT
1 CACCGGCATC-AAGCCTGCTAGGCATAAAGCCTGAAATAATT
*
74797577 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
* * *
74797618 CACCGGCATCAAGCCTGCTAGACATAAAGTCTAAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
*
74797659 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
*
74797700 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAA
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAA
74797736 ATCTCATATA
Statistics
Matches: 179, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
41 175 0.98
42 4 0.02
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (41 bp):
CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
Found at i:74797921 original size:62 final size:64
Alignment explanation
Indices: 74797850--74797977 Score: 185
Period size: 64 Copynumber: 2.0 Consensus size: 64
74797840 GCAAACAAAC
*
74797850 ATTCGAACCACATATGT-A-T-AATTTACA-ACATTAAAATTCAGCTCAAAGAA-TTTGTAACCT
1 ATTCGAACCACATATGTAAGTAAAATT-CATACATT-AAATTCAGCTC-AAGAACTTTGTAACCT
74797910 AT
63 AT
74797912 ATTCGAACCACATATGTAAGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
1 ATTCGAACCACATATGTAAGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
74797976 AT
1 AT
74797978 ATATTCGAAC
Statistics
Matches: 60, Mismatches: 1, Indels: 8
0.87 0.01 0.12
Matches are distributed among these distances:
62 17 0.28
63 6 0.10
64 28 0.47
65 9 0.15
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (64 bp):
ATTCGAACCACATATGTAAGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
Found at i:74813682 original size:47 final size:48
Alignment explanation
Indices: 74813573--74813683 Score: 140
Period size: 47 Copynumber: 2.4 Consensus size: 48
74813563 CCGGGATAAG
*
74813573 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTAGA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACA-TATAGTAGA
* * *
74813622 CA-A-AGTACTTCATCGGAACAAATCCGGAACTTTAACA-GTAGTCGA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATATAGTAGA
74813667 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
74813684 ACTCAATGTC
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
45 8 0.15
46 2 0.04
47 41 0.76
48 1 0.02
49 2 0.04
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (48 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATATAGTAGA
Found at i:74814456 original size:4 final size:4
Alignment explanation
Indices: 74814447--74814483 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
74814437 CCCTTTTCTA
74814447 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
74814484 CACGTTTGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:74816506 original size:14 final size:15
Alignment explanation
Indices: 74816482--74816516 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
74816472 TATATATATT
74816482 ACCATATAAATACTA
1 ACCATATAAATACTA
74816497 ACCATA-AAATACTA
1 ACCATATAAATACTA
74816511 ATCCAT
1 A-CCAT
74816517 GATTAAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
ACCATATAAATACTA
Found at i:74817212 original size:41 final size:41
Alignment explanation
Indices: 74817181--74817421 Score: 324
Period size: 41 Copynumber: 5.9 Consensus size: 41
74817171 CTATATAAAA
* * * * *
74817181 CACCGGCATAAAGCCTGCTAGGCACAAAGCCCG-ATTCATTT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAAT-AATT
* * *
74817222 CACCGGCA-CAAAGCCTGCTAGACATAAAGTCTGAATTAATT
1 CACCGGCATC-AAGCCTGCTAGGCATAAAGCCTGAAATAATT
*
74817263 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
* * *
74817304 CACCGGCATCAAGCCTGCTAGACATAAAGTCTAAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
*
74817345 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
*
74817386 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAA
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAA
74817422 ATCTCATATA
Statistics
Matches: 179, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
41 175 0.98
42 4 0.02
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (41 bp):
CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
Found at i:74817607 original size:62 final size:64
Alignment explanation
Indices: 74817536--74817663 Score: 185
Period size: 64 Copynumber: 2.0 Consensus size: 64
74817526 GCAAACAAAC
*
74817536 ATTCGAACCACATATGT-A-T-AATTTACA-ACATTAAAATTCAGCTCAAAGAA-TTTGTAACCT
1 ATTCGAACCACATATGTAAGTAAAATT-CATACATT-AAATTCAGCTC-AAGAACTTTGTAACCT
74817596 AT
63 AT
74817598 ATTCGAACCACATATGTAAGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
1 ATTCGAACCACATATGTAAGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
74817662 AT
1 AT
74817664 ATATTCGAAC
Statistics
Matches: 60, Mismatches: 1, Indels: 8
0.87 0.01 0.12
Matches are distributed among these distances:
62 17 0.28
63 6 0.10
64 28 0.47
65 9 0.15
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (64 bp):
ATTCGAACCACATATGTAAGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
Found at i:74823358 original size:14 final size:15
Alignment explanation
Indices: 74823334--74823368 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
74823324 TATATATATT
74823334 ACCATATAAATACTA
1 ACCATATAAATACTA
74823349 ACCATA-AAATACTA
1 ACCATATAAATACTA
74823363 ATCCAT
1 A-CCAT
74823369 GATTAAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
ACCATATAAATACTA
Found at i:74824064 original size:41 final size:41
Alignment explanation
Indices: 74824033--74824273 Score: 324
Period size: 41 Copynumber: 5.9 Consensus size: 41
74824023 CTATATAAAA
* * * * *
74824033 CACCGGCATAAAGCCTGCTAGGCACAAAGCCCG-ATTCATTT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAAT-AATT
* * *
74824074 CACCGGCA-CAAAGCCTGCTAGACATAAAGTCTGAATTAATT
1 CACCGGCATC-AAGCCTGCTAGGCATAAAGCCTGAAATAATT
*
74824115 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
* * *
74824156 CACCGGCATCAAGCCTGCTAGACATAAAGTCTAAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
*
74824197 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAATAATT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
*
74824238 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAAA
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAA
74824274 ATCTCATATA
Statistics
Matches: 179, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
41 175 0.98
42 4 0.02
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (41 bp):
CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAAATAATT
Found at i:74824459 original size:62 final size:64
Alignment explanation
Indices: 74824388--74824515 Score: 185
Period size: 64 Copynumber: 2.0 Consensus size: 64
74824378 GCAAACAAAC
*
74824388 ATTCGAACCACATATGT-A-T-AATTTACA-ACATTAAAATTCAGCTCAAAGAA-TTTGTAACCT
1 ATTCGAACCACATATGTAAGTAAAATT-CATACATT-AAATTCAGCTC-AAGAACTTTGTAACCT
74824448 AT
63 AT
74824450 ATTCGAACCACATATGTAAGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
1 ATTCGAACCACATATGTAAGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
74824514 AT
1 AT
74824516 ATATTCGAAC
Statistics
Matches: 60, Mismatches: 1, Indels: 8
0.87 0.01 0.12
Matches are distributed among these distances:
62 17 0.28
63 6 0.10
64 28 0.47
65 9 0.15
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (64 bp):
ATTCGAACCACATATGTAAGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
Found at i:74827660 original size:48 final size:48
Alignment explanation
Indices: 74827589--74827740 Score: 207
Period size: 48 Copynumber: 3.2 Consensus size: 48
74827579 GGATGCTCAG
* * *
74827589 GAATCTTGCACCCTAAGTGCCAATATCATGGCCCAAAGCCAACTCAAT
1 GAATCTCGCACCCAAAGTGCCAATATCATGGCCCAAAGCCAACTCGAT
* **
74827637 GAATCTCGTACCCAAAGTGCCAATATCATGGCCTGAAGCCAACTCGAT
1 GAATCTCGCACCCAAAGTGCCAATATCATGGCCCAAAGCCAACTCGAT
* * *
74827685 GAATCTCACACCCGAAGTGCCAATATCATGG-CCAGAAGCTAACTCGAT
1 GAATCTCGCACCCAAAGTGCCAATATCATGGCCCA-AAGCCAACTCGAT
74827733 GAATCTCG
1 GAATCTCG
74827741 TGCCAGAAGA
Statistics
Matches: 90, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
47 1 0.01
48 89 0.99
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (48 bp):
GAATCTCGCACCCAAAGTGCCAATATCATGGCCCAAAGCCAACTCGAT
Found at i:74827758 original size:48 final size:48
Alignment explanation
Indices: 74827603--74827765 Score: 206
Period size: 48 Copynumber: 3.4 Consensus size: 48
74827593 CTTGCACCCT
*
74827603 AAGTGCCAATATCATGGCCCA-AAGCCAACTCAATGAATCTCGTACCCA-
1 AAGTGCCAATATCATGG-CCAGAAGCCAACTCGATGAATCTCGTA-CCAG
* ** *
74827651 AAGTGCCAATATCATGGCCTGAAGCCAACTCGATGAATCTCACACCCG
1 AAGTGCCAATATCATGGCCAGAAGCCAACTCGATGAATCTCGTACCAG
* *
74827699 AAGTGCCAATATCATGGCCAGAAGCTAACTCGATGAATCTCGTGCCAG
1 AAGTGCCAATATCATGGCCAGAAGCCAACTCGATGAATCTCGTACCAG
*
74827747 AAGAT-CTAATATCATGGCC
1 AAG-TGCCAATATCATGGCC
74827766 CATAGTAAAC
Statistics
Matches: 100, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
47 4 0.04
48 95 0.95
49 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.20
Consensus pattern (48 bp):
AAGTGCCAATATCATGGCCAGAAGCCAACTCGATGAATCTCGTACCAG
Found at i:74837220 original size:43 final size:43
Alignment explanation
Indices: 74837162--74837254 Score: 168
Period size: 43 Copynumber: 2.2 Consensus size: 43
74837152 AACACTAAGG
*
74837162 GACACACAGCAGTGTAACATAACCGTGTGTCACATACGGCTAA
1 GACACACAGCAGTGTAACATAACCGTGTGTCACACACGGCTAA
*
74837205 GACACACAGCCGTGTAACATAACCGTGTGTCACACACGGCTAA
1 GACACACAGCAGTGTAACATAACCGTGTGTCACACACGGCTAA
74837248 GACACAC
1 GACACAC
74837255 CCCTGTGTCT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.34, C:0.29, G:0.20, T:0.16
Consensus pattern (43 bp):
GACACACAGCAGTGTAACATAACCGTGTGTCACACACGGCTAA
Found at i:74837395 original size:33 final size:33
Alignment explanation
Indices: 74837353--74837423 Score: 133
Period size: 33 Copynumber: 2.2 Consensus size: 33
74837343 TGGTACCAAT
74837353 ACAAGGCATAAATAAGCATTCAATCAAATTCAA
1 ACAAGGCATAAATAAGCATTCAATCAAATTCAA
74837386 ACAAGGCATAAATAAGCATTCAATCAAATTCAA
1 ACAAGGCATAAATAAGCATTCAATCAAATTCAA
*
74837419 CCAAG
1 ACAAG
74837424 CATCATTTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.51, C:0.20, G:0.10, T:0.20
Consensus pattern (33 bp):
ACAAGGCATAAATAAGCATTCAATCAAATTCAA
Found at i:74842728 original size:40 final size:40
Alignment explanation
Indices: 74842677--74842913 Score: 384
Period size: 40 Copynumber: 5.9 Consensus size: 40
74842667 ATAACCGCAA
* * * *
74842677 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
74842717 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
74842757 GCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
74842797 GCACAAATGCCTTCGGGTTTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
74842837 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
74842877 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
74842914 ATGCTCATGC
Statistics
Matches: 181, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 181 1.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:74850965 original size:40 final size:40
Alignment explanation
Indices: 74850914--74851148 Score: 364
Period size: 40 Copynumber: 5.9 Consensus size: 40
74850904 ATAACCGCAA
* * *
74850914 GCACAATTGCCTTCGGGTCTTAACCC-GAGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGA-TATATCAACTC
* * *
74850954 GCACGAATGCCTTCGGGCCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
74850994 GCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
74851034 GCACAAATGCCTTCGGGTTTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
74851074 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
74851114 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATC
74851149 CAATGCTCAT
Statistics
Matches: 177, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 175 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:74853851 original size:21 final size:20
Alignment explanation
Indices: 74853813--74853853 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
74853803 TTTGATCCTA
74853813 ATTTTAAAAAATACATAAAT
1 ATTTTAAAAAATACATAAAT
74853833 ATTTTCAAAATAATA-ATAAAT
1 ATTTT-AAAA-AATACATAAAT
74853854 TTAAATTCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.26
21 10 0.53
22 4 0.21
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (20 bp):
ATTTTAAAAAATACATAAAT
Found at i:74853895 original size:25 final size:24
Alignment explanation
Indices: 74853862--74853909 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
74853852 ATTTAAATTC
74853862 TATATTAATACTAAATAAATATAAT
1 TATATTAATACTAAATAAA-ATAAT
*
74853887 TATATTAATATTAAATAAAATAA
1 TATATTAATACTAAATAAAATAA
74853910 AAATCTCCCG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
TATATTAATACTAAATAAAATAAT
Found at i:74854618 original size:26 final size:26
Alignment explanation
Indices: 74854557--74854618 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 26
74854547 AGTATATATT
*
74854557 ATATAATATTTTATATAGTATTTAGAAA
1 ATAT-ATATTTCATATA-TATTTAGAAA
*
74854585 ACAT-TATTTCATAT-TATTTATGAAA
1 ATATATATTTCATATATATTTA-GAAA
74854610 ATATATATT
1 ATATATATT
74854619 ATTTTTAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
24 6 0.21
25 7 0.24
26 13 0.45
28 3 0.10
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (26 bp):
ATATATATTTCATATATATTTAGAAA
Found at i:74856681 original size:46 final size:46
Alignment explanation
Indices: 74856629--74856719 Score: 182
Period size: 46 Copynumber: 2.0 Consensus size: 46
74856619 TCAAAAAGTT
74856629 TTTAACATTAAAAATAAAAATATTTAATTTAATATAATTTAATAAG
1 TTTAACATTAAAAATAAAAATATTTAATTTAATATAATTTAATAAG
74856675 TTTAACATTAAAAATAAAAATATTTAATTTAATATAATTTAATAA
1 TTTAACATTAAAAATAAAAATATTTAATTTAATATAATTTAATAA
74856720 ATAAAATTTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (46 bp):
TTTAACATTAAAAATAAAAATATTTAATTTAATATAATTTAATAAG
Found at i:74856727 original size:14 final size:14
Alignment explanation
Indices: 74856687--74856749 Score: 56
Period size: 15 Copynumber: 4.4 Consensus size: 14
74856677 TAACATTAAA
*
74856687 AATAAA-AATATTT
1 AATAAATAAAATTT
* *
74856700 AATTTAATATAATTT
1 AA-TAAATAAAATTT
74856715 AATAAATAAAATTT
1 AATAAATAAAATTT
*
74856729 AAAAAAATAAAAATTT
1 -AATAAAT-AAAATTT
74856745 AATAA
1 AATAA
74856750 CGAAAATACA
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
13 2 0.05
14 13 0.33
15 17 0.44
16 7 0.18
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
AATAAATAAAATTT
Found at i:74856734 original size:46 final size:46
Alignment explanation
Indices: 74856638--74856742 Score: 151
Period size: 46 Copynumber: 2.3 Consensus size: 46
74856628 TTTTAACATT
* *
74856638 AAAAATAAAAATATTTAATTTAATATAATTTAATAAGTTTAACATT-
1 AAAAATAAAAATATTTAATTTAATATAATTTAATAAG-ATAAAATTA
74856684 AAAAATAAAAATATTTAATTTAATATAATTTAATAA-ATAAAATTTAA
1 AAAAATAAAAATATTTAATTTAATATAATTTAATAAGATAAAA-TT-A
74856731 AAAAATAAAAAT
1 AAAAATAAAAAT
74856743 TTAATAACGA
Statistics
Matches: 54, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
44 4 0.07
45 2 0.04
46 36 0.67
47 12 0.22
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.37
Consensus pattern (46 bp):
AAAAATAAAAATATTTAATTTAATATAATTTAATAAGATAAAATTA
Found at i:74856736 original size:15 final size:15
Alignment explanation
Indices: 74856705--74856746 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
74856695 TATTTAATTT
* *
74856705 AATATAATTT-AATA
1 AATAAAATTTAAAAA
74856719 AATAAAATTTAAAAA
1 AATAAAATTTAAAAA
74856734 AATAAAAATTTAA
1 AAT-AAAATTTAA
74856747 TAACGAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 9 0.38
15 6 0.25
16 9 0.38
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AATAAAATTTAAAAA
Found at i:74857857 original size:24 final size:24
Alignment explanation
Indices: 74857830--74857881 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
74857820 CTCATGCTTT
74857830 CTTTACATGTTCATCGTGTTCATG
1 CTTTACATGTTCATCGTGTTCATG
74857854 CTTTACATGTTCATCGTGTTCATG
1 CTTTACATGTTCATCGTGTTCATG
74857878 CTTT
1 CTTT
74857882 CTTTTCATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.15, C:0.21, G:0.15, T:0.48
Consensus pattern (24 bp):
CTTTACATGTTCATCGTGTTCATG
Found at i:74860988 original size:12 final size:13
Alignment explanation
Indices: 74860971--74860995 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74860961 AACCCTTTTC
74860971 TTTTTTCCCCAAT
1 TTTTTTCCCCAAT
74860984 TTTTTTCCCCAA
1 TTTTTTCCCCAA
74860996 ATCAGCTCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTTTTCCCCAAT
Found at i:74861035 original size:77 final size:78
Alignment explanation
Indices: 74860907--74861085 Score: 249
Period size: 77 Copynumber: 2.3 Consensus size: 78
74860897 AACCCCAAAA
* * *
74860907 TTTTTTCACCAAATCAGTTCCCCC-TCTCTCCAAATCCCTAAGTTTTTTTTCCC-GAACCCTTTT
1 TTTTTTCCCCAAATCAGTTCCCCCTTCTCTCCAAATCCCTAAGTTTTCTTTCCCAG-ACCCCTTT
74860970 CTTTTTTCCCCAAT
65 CTTTTTTCCCCAAT
* *
74860984 TTTTTTCCCCAAATCAGCTCCCCCTTTTC-CCAAAATCCCTAAG-TTTCTTTCCCAGACCCCTTT
1 TTTTTTCCCCAAATCAGTTCCCCCTTCTCTCC-AAATCCCTAAGTTTTCTTTCCCAGACCCCTTT
74861047 CTTTTTTCCCCAAT
65 CTTTTTTCCCCAAT
* *
74861061 TTTTTTTCCCAAATCAATTCCCCCT
1 TTTTTTCCCCAAATCAGTTCCCCCT
74861086 CGAAATCCCT
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
77 76 0.84
78 15 0.16
ACGTcount: A:0.18, C:0.37, G:0.03, T:0.41
Consensus pattern (78 bp):
TTTTTTCCCCAAATCAGTTCCCCCTTCTCTCCAAATCCCTAAGTTTTCTTTCCCAGACCCCTTTC
TTTTTTCCCCAAT
Found at i:74861753 original size:13 final size:13
Alignment explanation
Indices: 74861737--74861767 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
74861727 ATGGAAGGCT
74861737 GAAATTTTATTAG
1 GAAATTTTATTAG
74861750 GAAATTTTATTAG
1 GAAATTTTATTAG
*
74861763 AAAAT
1 GAAAT
74861768 AATTAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.13, T:0.42
Consensus pattern (13 bp):
GAAATTTTATTAG
Found at i:74862943 original size:583 final size:583
Alignment explanation
Indices: 74861837--74863008 Score: 2344
Period size: 583 Copynumber: 2.0 Consensus size: 583
74861827 TTTGTTGTTT
74861837 GTTCTTGGCTTGAATTAATCGAAGTAATGATTTTCTTTGTGTTAAATGATTTTGAGATTTTGGGT
1 GTTCTTGGCTTGAATTAATCGAAGTAATGATTTTCTTTGTGTTAAATGATTTTGAGATTTTGGGT
74861902 GATATATTGATGGTCACCATTGTTTGTTTGACTTAACAAGAAACATGATGATGATGAGTATTAGT
66 GATATATTGATGGTCACCATTGTTTGTTTGACTTAACAAGAAACATGATGATGATGAGTATTAGT
74861967 GAAAAAGGTGATAACAATAAACACAATGAAAAGATAAGTCAAAAATATAAGTCAGTATTTGTGAG
131 GAAAAAGGTGATAACAATAAACACAATGAAAAGATAAGTCAAAAATATAAGTCAGTATTTGTGAG
74862032 AAAACAATCTAAAACTATTCTCAGCTATTAGTTCAATATAAGAGGAACAGAGTTCATGACTTTTC
196 AAAACAATCTAAAACTATTCTCAGCTATTAGTTCAATATAAGAGGAACAGAGTTCATGACTTTTC
74862097 TCTCTATTTACAGAAAAAACAAAGTGCATGGGTTCTATCATCAAGCTATTTTGACAAATTTGATT
261 TCTCTATTTACAGAAAAAACAAAGTGCATGGGTTCTATCATCAAGCTATTTTGACAAATTTGATT
74862162 ATATACTTTAGGTGAAAGTCTTTCGGCTATTAACAATTTGACTACTCTCTAGATCATAAATCTTT
326 ATATACTTTAGGTGAAAGTCTTTCGGCTATTAACAATTTGACTACTCTCTAGATCATAAATCTTT
74862227 CTAATAACAACATAACAAGTATAATATCATTTCTTATAACAGTTGATATTATATAACAATGATTT
391 CTAATAACAACATAACAAGTATAATATCATTTCTTATAACAGTTGATATTATATAACAATGATTT
74862292 CGGAGGGCAGATTCCTATAATAGCTGGGAATTTTTCAAGCTTTCATTTGCTTATATTTTCATAAG
456 CGGAGGGCAGATTCCTATAATAGCTGGGAATTTTTCAAGCTTTCATTTGCTTATATTTTCATAAG
74862357 AATTCTTATTCAGGTTCCTTACATGTGTAAATCTTAAATATATTTTCACTAGTAAAAAAATTA
521 AATTCTTATTCAGGTTCCTTACATGTGTAAATCTTAAATATATTTTCACTAGTAAAAAAATTA
74862420 GTTCTTGGCTTGAATTAATCGAAGTAATGATTTTCTTTGTGTTAAATGATTTTGAGATTTTGGGT
1 GTTCTTGGCTTGAATTAATCGAAGTAATGATTTTCTTTGTGTTAAATGATTTTGAGATTTTGGGT
74862485 GATATATTGATGGTCACCATTGTTTGTTTGACTTAACAAGAAACATGATGATGATGAGTATTAGT
66 GATATATTGATGGTCACCATTGTTTGTTTGACTTAACAAGAAACATGATGATGATGAGTATTAGT
74862550 GAAAAAGGTGATAACAATAAACACAATGAAAAGATAAGTCAAAAATATAAGTCAGTATTTGTGAG
131 GAAAAAGGTGATAACAATAAACACAATGAAAAGATAAGTCAAAAATATAAGTCAGTATTTGTGAG
74862615 AAAACAATCTAAAACTATTCTCAGCTATTAGTTCAATATAAGAGGAACAGAGTTCATGACTTTTC
196 AAAACAATCTAAAACTATTCTCAGCTATTAGTTCAATATAAGAGGAACAGAGTTCATGACTTTTC
74862680 TCTCTATTTACAGAAAAAACAAAGTGCATGGGTTCTATCATCAAGCTATTTTGACAAATTTGATT
261 TCTCTATTTACAGAAAAAACAAAGTGCATGGGTTCTATCATCAAGCTATTTTGACAAATTTGATT
74862745 ATATACTTTAGGTGAAAGTCTTTCGGCTATTAACAATTTGACTACTCTCTAGATCATAAATCTTT
326 ATATACTTTAGGTGAAAGTCTTTCGGCTATTAACAATTTGACTACTCTCTAGATCATAAATCTTT
74862810 CTAATAACAACATAACAAGTATAATATCATTTCTTATAACAGTTGATATTATATAACAATGATTT
391 CTAATAACAACATAACAAGTATAATATCATTTCTTATAACAGTTGATATTATATAACAATGATTT
74862875 CGGAGGGCAGATTCCTATAATAGCTGGGAATTTTTCAAGCTTTCATTTGCTTATATTTTCATAAG
456 CGGAGGGCAGATTCCTATAATAGCTGGGAATTTTTCAAGCTTTCATTTGCTTATATTTTCATAAG
74862940 AATTCTTATTCAGGTTCCTTACATGTGTAAATCTTAAATATATTTTCACTAGTAAAAAAATTA
521 AATTCTTATTCAGGTTCCTTACATGTGTAAATCTTAAATATATTTTCACTAGTAAAAAAATTA
74863003 GTTCTT
1 GTTCTT
74863009 ATAAGATCAT
Statistics
Matches: 589, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
583 589 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.37
Consensus pattern (583 bp):
GTTCTTGGCTTGAATTAATCGAAGTAATGATTTTCTTTGTGTTAAATGATTTTGAGATTTTGGGT
GATATATTGATGGTCACCATTGTTTGTTTGACTTAACAAGAAACATGATGATGATGAGTATTAGT
GAAAAAGGTGATAACAATAAACACAATGAAAAGATAAGTCAAAAATATAAGTCAGTATTTGTGAG
AAAACAATCTAAAACTATTCTCAGCTATTAGTTCAATATAAGAGGAACAGAGTTCATGACTTTTC
TCTCTATTTACAGAAAAAACAAAGTGCATGGGTTCTATCATCAAGCTATTTTGACAAATTTGATT
ATATACTTTAGGTGAAAGTCTTTCGGCTATTAACAATTTGACTACTCTCTAGATCATAAATCTTT
CTAATAACAACATAACAAGTATAATATCATTTCTTATAACAGTTGATATTATATAACAATGATTT
CGGAGGGCAGATTCCTATAATAGCTGGGAATTTTTCAAGCTTTCATTTGCTTATATTTTCATAAG
AATTCTTATTCAGGTTCCTTACATGTGTAAATCTTAAATATATTTTCACTAGTAAAAAAATTA
Found at i:74871167 original size:17 final size:17
Alignment explanation
Indices: 74871145--74871184 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
74871135 TACAGTCGCC
74871145 CGTGTGGGGCACATGGG
1 CGTGTGGGGCACATGGG
*
74871162 CGTGTGGGGTACATGGG
1 CGTGTGGGGCACATGGG
74871179 CGTGTG
1 CGTGTG
74871185 TGATTACACG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.10, C:0.15, G:0.53, T:0.23
Consensus pattern (17 bp):
CGTGTGGGGCACATGGG
Found at i:74874162 original size:21 final size:20
Alignment explanation
Indices: 74874089--74874169 Score: 74
Period size: 22 Copynumber: 3.9 Consensus size: 20
74874079 GTTAAAACAA
*
74874089 CAAAGAATCGATTCAAACAA-
1 CAAAGAATCGATTTAAA-AAG
* * *
74874109 TAATGAATTGATTTAAAACAG
1 CAAAGAATCGATTTAAAA-AG
*
74874130 CAAAAAAATCGATTTAAAGAAG
1 C-AAAGAATCGATTTAAA-AAG
74874152 CAAAGAATCGATTTAAAA
1 CAAAGAATCGATTTAAAA
74874170 TAACAATCAT
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
19 1 0.02
20 15 0.31
21 15 0.31
22 16 0.33
23 1 0.02
ACGTcount: A:0.54, C:0.11, G:0.12, T:0.22
Consensus pattern (20 bp):
CAAAGAATCGATTTAAAAAG
Found at i:74874212 original size:24 final size:24
Alignment explanation
Indices: 74874156--74874212 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
74874146 AAGAAGCAAA
*
74874156 GAATCGATTTAAAATAACAATCAT
1 GAATCGATTTAAAACAACAATCAT
*
74874180 GGATCGATTTAAAACAACAATCAT
1 GAATCGATTTAAAACAACAATCAT
*
74874204 GAATTGATT
1 GAATCGATT
74874213 CAAAGAAGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.30
Consensus pattern (24 bp):
GAATCGATTTAAAACAACAATCAT
Found at i:74874281 original size:42 final size:44
Alignment explanation
Indices: 74874186--74874294 Score: 150
Period size: 42 Copynumber: 2.5 Consensus size: 44
74874176 TCATGGATCG
* *
74874186 ATTTAAAACAACAATCATGAATTGATTCAAAGAAGCAAAAAAATCA
1 ATTTAAAACAACAA--ATCAATCGATTCAAAGAAGCAAAAAAATCA
*
74874232 ATTTAAAACAACAAA-CAATCGATTCAAAGAAG-AAAAAAATCT
1 ATTTAAAACAACAAATCAATCGATTCAAAGAAGCAAAAAAATCA
74874274 ATTTAAAACAACAAATTCAAT
1 ATTTAAAACAACAAA-TCAAT
74874295 AAAACAAACT
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
42 24 0.41
43 15 0.26
44 5 0.09
46 14 0.24
ACGTcount: A:0.58, C:0.14, G:0.06, T:0.22
Consensus pattern (44 bp):
ATTTAAAACAACAAATCAATCGATTCAAAGAAGCAAAAAAATCA
Found at i:74876855 original size:11 final size:11
Alignment explanation
Indices: 74876841--74876876 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
74876831 ATATCCAAAT
*
74876841 AATAATAATAA
1 AATAATAGTAA
74876852 AATAATAGTAA
1 AATAATAGTAA
*
74876863 CATAATAGTAA
1 AATAATAGTAA
74876874 AAT
1 AAT
74876877 GGTAGCAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.28
Consensus pattern (11 bp):
AATAATAGTAA
Found at i:74876908 original size:22 final size:22
Alignment explanation
Indices: 74876883--74876929 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
74876873 AAATGGTAGC
*
74876883 AAAATAGAAAGAAAACAATAAA
1 AAAATAGAAAGAAAACAACAAA
* **
74876905 AAAATAGCATTAAAACAACAAA
1 AAAATAGAAAGAAAACAACAAA
74876927 AAA
1 AAA
74876930 TAGTAAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.74, C:0.09, G:0.06, T:0.11
Consensus pattern (22 bp):
AAAATAGAAAGAAAACAACAAA
Found at i:74877017 original size:89 final size:90
Alignment explanation
Indices: 74876917--74877095 Score: 243
Period size: 91 Copynumber: 2.0 Consensus size: 90
74876907 AATAGCATTA
* * *
74876917 AAACAACAAAAAATAGTAAAA-AATTTGGTCATTTTGTAAATCCGGGCTAGGCCCAGGCCAAAAA
1 AAACAACAAAAAATAGCAAAATAATTTGGTCATTTTGTAAATCCGGGCCAGGCCCAAGCCAAAAA
* *
74876981 TGTTTTATTTTTACCCAAGCCTATC
66 CGTCTTATTTTTACCCAAGCCTATC
** * ** *
74877006 AAACAACAAAAAATAGCAAAATTTTTTTTGTTTTTTTGTAAATTCGGGCCAGGCCCAAGCCAAAA
1 AAACAACAAAAAATAGCAAAA-TAATTTGGTCATTTTGTAAATCCGGGCCAGGCCCAAGCCAAAA
74877071 ACGTCTTATTTTTACCCAAGCCTAT
65 ACGTCTTATTTTTACCCAAGCCTAT
74877096 TTTTCGGGTC
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
89 20 0.26
91 57 0.74
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (90 bp):
AAACAACAAAAAATAGCAAAATAATTTGGTCATTTTGTAAATCCGGGCCAGGCCCAAGCCAAAAA
CGTCTTATTTTTACCCAAGCCTATC
Found at i:74885161 original size:18 final size:18
Alignment explanation
Indices: 74885122--74885169 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
74885112 TAGTTTATCA
* *
74885122 ATTTA-TTTCATTTGTTT
1 ATTTATTTTTATTTATTT
*
74885139 GTTTATTTTTATTTATTT
1 ATTTATTTTTATTTATTT
74885157 ATTTATTTTTATT
1 ATTTATTTTTATT
74885170 ACCTTAATCT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
17 4 0.15
18 22 0.85
ACGTcount: A:0.19, C:0.02, G:0.04, T:0.75
Consensus pattern (18 bp):
ATTTATTTTTATTTATTT
Found at i:74891446 original size:9 final size:8
Alignment explanation
Indices: 74891415--74891447 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
74891405 TAGTCCTAAT
74891415 TCACAAAA
1 TCACAAAA
74891423 TCACAAAA
1 TCACAAAA
74891431 TCACAAAA
1 TCACAAAA
74891439 TACACAAAA
1 T-CACAAAA
74891448 ATCTGCTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 17 0.71
9 7 0.29
ACGTcount: A:0.64, C:0.24, G:0.00, T:0.12
Consensus pattern (8 bp):
TCACAAAA
Found at i:74894102 original size:48 final size:46
Alignment explanation
Indices: 74894004--74894322 Score: 236
Period size: 48 Copynumber: 6.7 Consensus size: 46
74893994 GATTGTGTGC
*
74894004 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT-ATGAGAG-C
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGG---CATTGA-GAGAGAG
*
74894050 TAGTGTAAGACCATGTCTGGGACATGACATCGGCATTGAGACGAGAG
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA-GAGAG
* * * *
74894097 ATAGTGTAAAACCATGTCTGAGACATGGCATCGGC-TATGAGA-TGTG
1 -TAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAGAGAGAG
* * ** * *
74894143 TCAGTGTAAGATCATGTCTGGGACATGGCATCGACACAGATAGAGGTG
1 T-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAGA-GAG
* * * ** *
74894191 TCAATGTAAGACCATGTTTGGGACATAGCATCGGCACAGATATGTGAGAG
1 T-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG--A-GAGAGAG
* * * * *
74894241 CCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTTGATCGCGATAG
1 -TAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA--GAGAGAG
74894290 TCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 T-AGTGTAAGACCATGTCTGGGACATGGCATCG
74894323 ACTTGATGTA
Statistics
Matches: 220, Mismatches: 36, Indels: 31
0.77 0.13 0.11
Matches are distributed among these distances:
45 7 0.03
46 48 0.22
47 15 0.07
48 80 0.36
49 35 0.16
50 33 0.15
51 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAGAGAG
Found at i:74894150 original size:94 final size:94
Alignment explanation
Indices: 74894005--74894373 Score: 322
Period size: 94 Copynumber: 3.9 Consensus size: 94
74893995 ATTGTGTGCT
* * *
74894005 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGA-GAGCTAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-C-TATGA-GATGAGCCAGTGTAAGACCATGTC
*
74894067 TGGGACATGACATCGGCATTGAGACGAGAGAT-
63 TGGGACATGGCATCGGCATTGAGACGAGAG-TC
* * * * *
74894099 AGTGTAAAACCATGTCTGAGACATGGCATCGGCTATGAGATGTGTCAGTGTAAGATCATGTCTGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGATGAGCCAGTGTAAGACCATGTCTGG
* ** * *
74894164 GACATGGCATCGACACAGATA-GAGGTGTC
66 GACATGGCATCGGCATTGAGACGA-GAGTC
* * * *
74894193 AATGTAAGACCATGTTTGGGACATAGCATCGGCACAGATATGTGA-GAGCCAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG--C---TATGAGATGAGCCAGTGTAAGACCATG
* * *
74894257 TCTGGGACATGGCGTCGGCCTTGATCG-CGATAGTC
61 TCTGGGACATGGCATCGGCATTGA--GACGAGAGTC
* * *
74894292 AGTGTAAGACCATGTCTGGGACATGGCATCGACT-TGATGTATGAGCCAGTATAAGACCATATCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGA-G-ATGAGCCAGTGTAAGACCATGTCT
* *
74894356 AGGATATGGCATCGGCAT
64 GGGACATGGCATCGGCAT
74894374 CCTACGCTAT
Statistics
Matches: 217, Mismatches: 42, Indels: 30
0.75 0.15 0.10
Matches are distributed among these distances:
93 7 0.03
94 78 0.36
95 15 0.07
96 42 0.19
97 1 0.00
98 35 0.16
99 37 0.17
100 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGATGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCATTGAGACGAGAGTC
Found at i:74894365 original size:47 final size:49
Alignment explanation
Indices: 74894046--74894369 Score: 206
Period size: 48 Copynumber: 6.7 Consensus size: 49
74894036 CACATTATGA
* * *
74894046 GAGCTAGTGTAAGACCATGTCTGGGACATGACATCGGCATTGA--GACGA-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGATCG-CGAT
** * * * *
74894094 GAGATAGTGTAAAACCATGTCTGAGACATGGCATCGGC-T-AT-GAGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATCGCGAT
* * * ** * *
74894140 GTGTCAGTGTAAGATCATGTCTGGGACATGGCATCGACACAGAT--AGAG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGATCGCGAT
* * * * * * * *
74894188 GTGTCAATGTAAGACCATGTTTGGGACATAGCATCGGCAC-AGATATGTGA-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTGAT-CGCGAT
* *
74894238 GAGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTTGATCGCGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATCGCGAT
* *
74894288 -AGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAT-G-TAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATCGCGAT
* * * *
74894334 GAGCCAGTATAAGACCATATCTAGGATATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
74894370 GCATCCTACG
Statistics
Matches: 225, Mismatches: 38, Indels: 27
0.78 0.13 0.09
Matches are distributed among these distances:
45 3 0.01
46 35 0.16
47 31 0.14
48 79 0.35
49 39 0.17
50 36 0.16
51 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATCGCGAT
Found at i:74898070 original size:43 final size:43
Alignment explanation
Indices: 74898009--74898094 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
74897999 TTGAAGAGTT
74898009 TCCATAACTAGGGTTTTTGGCCAAGCTTCCAAGCTCGATTTTA
1 TCCATAACTAGGGTTTTTGGCCAAGCTTCCAAGCTCGATTTTA
* *
74898052 TCCATAGCTAGGGTTTTTGGCCAAGCTTCCAAGCTTGATTTTA
1 TCCATAACTAGGGTTTTTGGCCAAGCTTCCAAGCTCGATTTTA
74898095 AGTCCGTTCT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (43 bp):
TCCATAACTAGGGTTTTTGGCCAAGCTTCCAAGCTCGATTTTA
Found at i:74900947 original size:27 final size:27
Alignment explanation
Indices: 74900925--74901126 Score: 145
Period size: 27 Copynumber: 7.5 Consensus size: 27
74900915 AAATTACTGA
*
74900925 AATACCCTCGATTTGTAGAATTACCAT
1 AATACCCTCGATTTATAGAATTACCAT
** *
74900952 TTTACCCTCGATTTATAGAATTACCGT
1 AATACCCTCGATTTATAGAATTACCAT
* * * *
74900979 -TTCACCCTCGATTTACAAAATTACCGT
1 AAT-ACCCTCGATTTATAGAATTACCAT
** *
74901006 TTTACCTTCGATTTATAGAATTACCAT
1 AATACCCTCGATTTATAGAATTACCAT
** * **
74901033 TTTACCCTCGATTTACAGAATTACTGT
1 AATACCCTCGATTTATAGAATTACCAT
** * *
74901060 TTTACCCTCGATTTAAAAAATTACCAT
1 AATACCCTCGATTTATAGAATTACCAT
** * * *
74901087 TTTACCCTCAATTTACAAAATTACCAT
1 AATACCCTCGATTTATAGAATTACCAT
**
74901114 TTTACCCTCGATT
1 AATACCCTCGATT
74901127 GTGAAATTAC
Statistics
Matches: 152, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.01
27 148 0.97
28 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
AATACCCTCGATTTATAGAATTACCAT
Found at i:74901001 original size:54 final size:54
Alignment explanation
Indices: 74900927--74901126 Score: 283
Period size: 54 Copynumber: 3.7 Consensus size: 54
74900917 ATTACTGAAA
** * *
74900927 TACCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
* * *
74900981 CACCCTCGATTTACAAAATTACCGTTTTACCTTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
* ** * *
74901035 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTAAAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
*
74901089 TACCCTCAATTTACAAAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
74901127 GTGAAATTAC
Statistics
Matches: 129, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 129 1.00
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
Found at i:74901044 original size:81 final size:81
Alignment explanation
Indices: 74900927--74901126 Score: 310
Period size: 81 Copynumber: 2.5 Consensus size: 81
74900917 ATTACTGAAA
* *
74900927 TACCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATT
* *
74900992 TACAAAATTACCGTTT
66 TAAAAAATTACCATTT
* * *
74901008 TACCTTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATT
74901073 TAAAAAATTACCATTT
66 TAAAAAATTACCATTT
* * *
74901089 TACCCTCAATTTACAAAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
74901127 GTGAAATTAC
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 108 1.00
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATT
TAAAAAATTACCATTT
Found at i:74901145 original size:26 final size:26
Alignment explanation
Indices: 74901116--74901279 Score: 159
Period size: 27 Copynumber: 6.2 Consensus size: 26
74901106 ATTACCATTT
* * * *
74901116 TACCCTCGATTGTGAAATTACTAAAA
1 TACCCTAGTTTGTAAAATTACCAAAA
** *
74901142 TACCCT-GTAGGATAGAATTACCAAAA
1 TACCCTAGTTTG-TAAAATTACCAAAA
*
74901168 CACCCCTAGTTTGTAAAATTACCAAAA
1 TA-CCCTAGTTTGTAAAATTACCAAAA
*
74901195 TACCCTAGTTTGTAAAATTACCGAAA
1 TACCCTAGTTTGTAAAATTACCAAAA
* * * *
74901221 TACCATTGGTTTGTGAAATTACCGAAA
1 TACC-CTAGTTTGTAAAATTACCAAAA
*
74901248 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCC-TAGTTTGTAAAATTACCAAAA
74901275 TACCC
1 TACCC
74901280 CTGATTTACA
Statistics
Matches: 113, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
25 2 0.02
26 45 0.40
27 63 0.56
28 3 0.03
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (26 bp):
TACCCTAGTTTGTAAAATTACCAAAA
Found at i:74901187 original size:27 final size:27
Alignment explanation
Indices: 74901157--74901281 Score: 162
Period size: 27 Copynumber: 4.7 Consensus size: 27
74901147 TGTAGGATAG
*
74901157 AATTACCAAAACACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
74901184 AATTACCAAAATA-CCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* ** * *
74901210 AATTACCGAAATACCATTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
74901237 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
74901264 AATTACCAAAATACCCCT
1 AATTACCAAAATACCCCT
74901282 GATTTACAAA
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 25 0.29
27 60 0.71
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:74901214 original size:53 final size:53
Alignment explanation
Indices: 74901125--74901281 Score: 181
Period size: 53 Copynumber: 2.9 Consensus size: 53
74901115 TTACCCTCGA
* ** * *
74901125 TTGTGAAATTACTAAAATACCCT-GTAGGATAGAATTACCAAAACACCCCTAGT
1 TTGTGAAATTACCAAAATACCCTAGTTTG-TAAAATTACCAAAATACCCCTAGT
* * ** *
74901178 TTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCGAAATACCATTGGT
1 TTGTGAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTAGT
* *
74901231 TTGTGAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCT
1 TTGTGAAATTACCAAAATACCC-TAGTTTGTAAAATTACCAAAATACCCCT
74901282 GATTTACAAA
Statistics
Matches: 86, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
53 59 0.69
54 27 0.31
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (53 bp):
TTGTGAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTAGT
Found at i:74901294 original size:54 final size:54
Alignment explanation
Indices: 74901157--74901389 Score: 175
Period size: 54 Copynumber: 4.3 Consensus size: 54
74901147 TGTAGGATAG
* ** *
74901157 AATTACCAAAACACCCCT-AGTTTGTAAAATTACCAAAATACCC-TAGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTACAAAATTACCGAAATACCCTTAGTTTGTAA
* ** * *** *
74901210 AATTACCGAAATACCATTGGTTTGTGAAATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCCTGATTTACAAAATTACCGAAATACCCTTAGTTTGTAA
** * * *
74901264 AATTACCAAAATACCCCTGATTTACAAAATTATAGAAATACCTTTGACTTTCTAAA
1 AATTACCAAAATACCCCTGATTTACAAAATTACCGAAATACCCTT-AGTTTGT-AA
* ** * * * *
74901320 AATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCA-AAATACCCCTGATTTACAAAATTACCGAAATACCCTTAGTTTGTAA
* *
74901374 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
74901390 TTGTAGGATG
Statistics
Matches: 139, Mismatches: 35, Indels: 11
0.75 0.19 0.06
Matches are distributed among these distances:
53 35 0.25
54 55 0.40
55 11 0.08
56 38 0.27
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGATTTACAAAATTACCGAAATACCCTTAGTTTGTAA
Found at i:74901366 original size:27 final size:27
Alignment explanation
Indices: 74901157--74901370 Score: 144
Period size: 27 Copynumber: 7.9 Consensus size: 27
74901147 TGTAGGATAG
* * * * *
74901157 AATTACCAAAACACCCCTAGTTTGTAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* * *
74901184 AATTACCAAAATACCC-TAGTTTGTAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* **
74901210 AATTACCGAAATACCATTGGTTTGTGA
1 AATTACCGAAATACCCTTGGTTTGCAA
** *
74901237 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* * * *
74901264 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCGAAATACCCTTGGTTTGCAA
** * *
74901291 AATTATAGAAATACCTTTGACTTT-CTAAA
1 AATTACCGAAATACCCTTG-GTTTGC--AA
** * *
74901320 AATTATAGAAATACCATTGGTTTACAA
1 AATTACCGAAATACCCTTGGTTTGCAA
*
74901347 AATTACTGAAATACCCTTGGTTTG
1 AATTACCGAAATACCCTTGGTTTG
74901371 TAGATTTACC
Statistics
Matches: 156, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
26 24 0.15
27 105 0.67
28 6 0.04
29 21 0.13
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGGTTTGCAA
Found at i:74901453 original size:27 final size:27
Alignment explanation
Indices: 74901423--74901487 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
74901413 AACCCTAATA
74901423 GGTAAAATGACCGTAA-AGTCCC-TGTAG
1 GGTAAAATGACCGTAATA--CCCTTGTAG
* * *
74901450 GGTAAAGTGATCGTAATACCCTTGTAT
1 GGTAAAATGACCGTAATACCCTTGTAG
74901477 GGTAAAATGAC
1 GGTAAAATGAC
74901488 GAATATGCTC
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
26 3 0.10
27 27 0.87
28 1 0.03
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCTTGTAG
Found at i:74902336 original size:25 final size:24
Alignment explanation
Indices: 74902298--74902367 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
74902288 AGGAAGTGCT
* *
74902298 AAAAGGGCTCTGCCCCAGTTTGCC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
74902322 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
74902347 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
74902368 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 1 0.02
25 40 0.98
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:74902380 original size:24 final size:23
Alignment explanation
Indices: 74902298--74902394 Score: 88
Period size: 25 Copynumber: 4.0 Consensus size: 23
74902288 AGGAAGTGCT
*
74902298 AAAAGGGCTCTGCCCCAGTT-TGCC
1 AAAAGGGCTTTGCCCCAGTTAT--C
74902322 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAG-TTATC
*
74902347 AGAAAGGGCTTTGCCCCAGTTATT
1 A-AAAGGGCTTTGCCCCAGTTATC
**
74902371 AAAAGAGGCTAAGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
74902395 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
23 4 0.06
24 13 0.21
25 43 0.68
26 2 0.03
27 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATC
Found at i:74902574 original size:42 final size:42
Alignment explanation
Indices: 74902515--74902606 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
74902505 TAGTCTCCCC
*
74902515 AAATGGGCTTGCATACATTCATTAACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
*
74902557 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
74902599 AAATGGGC
1 AAATGGGC
74902607 CTAAGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
Done.