Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 226 of 344
Found at i:74902665 original size:31 final size:31
Alignment explanation
Indices: 74902630--74902713 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
74902620 CGTTTACAGT
74902630 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
74902661 AAAGGCTTCGGCCTAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
74902692 AAAGGCTTTGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
74902714 TCAAGACTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:74903648 original size:22 final size:21
Alignment explanation
Indices: 74903600--74903648 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
74903590 AGCTTGTAGC
74903600 ACGGGCACGTCTCAAGGTCAT
1 ACGGGCACGTCTCAAGGTCAT
* * **
74903621 AGGGGCATGTCTCTTGGATCAT
1 ACGGGCACGTCTCAAGG-TCAT
74903643 ACGGGC
1 ACGGGC
74903649 GTGTGACCCC
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.20, C:0.24, G:0.33, T:0.22
Consensus pattern (21 bp):
ACGGGCACGTCTCAAGGTCAT
Found at i:74911341 original size:20 final size:20
Alignment explanation
Indices: 74911316--74911367 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
74911306 AAGGCAATGC
74911316 ACACACCCGTGTGCTATGGG
1 ACACACCCGTGTGCTATGGG
74911336 ACACACCCGTGTGCTATGGG
1 ACACACCCGTGTGCTATGGG
*
74911356 ACACACTCGTGT
1 ACACACCCGTGT
74911368 CCTCAGCCTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.31, G:0.27, T:0.21
Consensus pattern (20 bp):
ACACACCCGTGTGCTATGGG
Found at i:74914227 original size:132 final size:131
Alignment explanation
Indices: 74913844--74914343 Score: 492
Period size: 132 Copynumber: 3.8 Consensus size: 131
74913834 ATTCCAGAGA
* * * * *
74913844 GATATTCGATTATTTTG-GACAAACGGGAGATTGCAGCCCAGCACGATAGGGCACTATT-CTCAA
1 GATATTCGATTATTTTGAG-CAAACGAGAAATTGCAACCCAGCACGATAGGGCACTATTCCGCGA
* * * * * * * *** *
74913907 ATCGCCAAATATTGAACATC--CTTTGTATTGAAAGGTTTTTAATAA-ACATGTGTGAAAACCTA
65 ATTGCCAAATATCGAATATCGTCTTCGT-TTTAAAGATTTTTAA-AAGACATGAGTGAAATTTTG
74913969 AAGG
128 AAGG
* * * * **
74913973 AATATTCGATTGTTTTGAGCAGACGAGGAATTATAACCCAGCACGATAGGGCA-TGATTCC-CGA
1 GATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACGATAGGGCACT-ATTCCGCGA
* *** * *** * * * *
74914036 ATTGTCAAACGCCAAATATTACCTTCATTTTAAATGATTTTTAGAAGATATGCGTGAAATTTTGA
65 ATTGCCAAATATCGAATATCGTCTTCGTTTTAAA-GATTTTTAAAAGACATGAGTGAAATTTTGA
74914101 AGG
129 AGG
* * *
74914104 GATATTTGATTATTTTAAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACTATTCCGCGAA
1 GATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACGATAGGGCACTATTCCGCGAA
*
74914169 TTGCCAAATATCGAATATCGTCTTCGTTTTAAAGAATTTTTAAAAGGCATGAGTGAAATTTTGAA
66 TTGCCAAATATCGAATATCGTCTTCGTTTTAAAG-ATTTTTAAAAGACATGAGTGAAATTTTGAA
74914234 GG
130 GG
* * *
74914236 GATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACTATTCTGCGAA
1 GATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACGATAGGGCACTATTCCGCGAA
* * *
74914301 ATGCCAAATATCGAGTCTCGTCTTCGTTTTAAAGAATTTTTAA
66 TTGCCAAATATCGAATATCGTCTTCGTTTTAAAG-ATTTTTAA
74914344 TAATTGTGAA
Statistics
Matches: 302, Mismatches: 59, Indels: 17
0.80 0.16 0.04
Matches are distributed among these distances:
128 1 0.00
129 58 0.19
130 9 0.03
131 76 0.25
132 158 0.52
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (131 bp):
GATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACGATAGGGCACTATTCCGCGAA
TTGCCAAATATCGAATATCGTCTTCGTTTTAAAGATTTTTAAAAGACATGAGTGAAATTTTGAAG
G
Found at i:74916042 original size:3 final size:3
Alignment explanation
Indices: 74916034--74916068 Score: 52
Period size: 3 Copynumber: 11.0 Consensus size: 3
74916024 AAAAAGTAAC
74916034 AAT AAT AAT AAT AAT AAT AAT AAAT CAAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT -AAT -AAT AAT AAT
74916069 GATGATGATG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
3 24 0.80
4 6 0.20
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:74918147 original size:89 final size:89
Alignment explanation
Indices: 74917996--74918207 Score: 289
Period size: 89 Copynumber: 2.4 Consensus size: 89
74917986 TTGTCTTCAG
* * * ** * * * *
74917996 TCTGCTGCACTGCAATTTCAGGGAGATAAGACTAGTGATTTTCAGCCTATTACCCTATTGCTTAG
1 TCTGCTTCACTGCAACTTCAGGAAGGCAAGATTTGTAATTTTCAGCCTATTACCCTACTGCTTAG
* *
74918061 GGGGTTAAGGCTTAGTGGCTTGAT
66 GGGATTAAGGCTTAGTGGCTTGAA
74918085 TCTGCTTCACTGCAACTTCAGGAAGGCAAGATTTGTAATTTTCAGCCTATTACCCTACTGCTTAG
1 TCTGCTTCACTGCAACTTCAGGAAGGCAAGATTTGTAATTTTCAGCCTATTACCCTACTGCTTAG
*
74918150 GGGATTAAGGCTTGGTGGCTTGAA
66 GGGATTAAGGCTTAGTGGCTTGAA
* * *
74918174 TCTGCTTCATTGTAACTTCAAGAAGGCAAGATTT
1 TCTGCTTCACTGCAACTTCAGGAAGGCAAGATTT
74918208 ACCGTCTTCG
Statistics
Matches: 108, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
89 108 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (89 bp):
TCTGCTTCACTGCAACTTCAGGAAGGCAAGATTTGTAATTTTCAGCCTATTACCCTACTGCTTAG
GGGATTAAGGCTTAGTGGCTTGAA
Found at i:74918443 original size:138 final size:137
Alignment explanation
Indices: 74918261--74918792 Score: 452
Period size: 138 Copynumber: 3.9 Consensus size: 137
74918251 CTATTTTGAT
* * *
74918261 CTGCTCTACTTCAACTTCAAAGAGATAAGGTCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
1 CTGCTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
* * * * * * *
74918326 TCAGAGAAGTAAGATTTGTTATCTTCAGTCTACTCCACTACAACTTTAAGGAGATAAGA-CTTGT
66 TCAGGGAAATAAGATTTGTTATCTT-AATCTGCTCCACTACAACTTCAGGGAGACAAGATC-TGT
74918390 AACTTCGAC
129 AACTTCGAC
* * *
74918399 CTGCTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATTTGCTCCACTGCATCT
1 CTGCTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
* * * *
74918464 TCAGGGAAATATGATTTGCTATAT-TTGATCTGCTCCACTACAA-TCTCAGGGAAACAAGATCTA
66 TCAGGGAAATAAGATTTG-T-TATCTTAATCTGCTCCACTACAACT-TCAGGGAGACAAGATCTG
*
74918527 CAATCTTC-AGC
128 TAA-CTTCGA-C
* * * * * * * * *
74918538 CTACTCCACTACAACTTTAGGGAGTTAGGA--TG----GTGGCTTAAATCTGCTT-CACTGCAAC
1 CTGCTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTG-TTCCACTGCAAC
** *** * * *
74918596 TTCA-GGAAGGCAAGATTTACCATCTTAAATCTGTTCCACTGCAACTTCGGGGAGACAAGATCTG
65 TTCAGGGAA-ATAAGATTTGTTATCTT-AATCTGCTCCACTACAACTTCAGGGAGACAAGATCTG
* *
74918660 T---TTTGAT
128 TAACTTCGAC
*
74918667 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTT-GCTTCAATCTGTTCCACTGCAACT
1 CTGCTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
* * *
74918731 TCAGGGAAATAAGATTTGCTATAT-TTGATCTGCTCCACTGCAA-TCTCAGGGAAACAAGATCT
66 TCAGGGAAATAAGATTTG-T-TATCTTAATCTGCTCCACTACAACT-TCAGGGAGACAAGATCT
74918793 ACAATCTTCA
Statistics
Matches: 308, Mismatches: 63, Indels: 50
0.73 0.15 0.12
Matches are distributed among these distances:
129 25 0.08
130 1 0.00
131 4 0.01
132 6 0.02
133 60 0.19
134 62 0.20
135 7 0.02
136 2 0.01
137 3 0.01
138 102 0.33
139 33 0.11
140 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (137 bp):
CTGCTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
TCAGGGAAATAAGATTTGTTATCTTAATCTGCTCCACTACAACTTCAGGGAGACAAGATCTGTAA
CTTCGAC
Found at i:74918681 original size:41 final size:41
Alignment explanation
Indices: 74918624--74918792 Score: 115
Period size: 41 Copynumber: 3.9 Consensus size: 41
74918614 ACCATCTTAA
* * *
74918624 ATCTGTTCCACTGCAACTTCGGGGAGACAAGATCTGTTTTG
1 ATCTGCTCCACTGCAACTTCAGAGAGACAAGATCTGTTTTG
* *
74918665 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTG
1 ATCTGCTCCACTGCAACTTCAGAGAGACAAGATCTGT--TTTG
* * * * *
74918708 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATATTTG
1 -----ATCTGCTCCACTGCAACTTCAGAGAGACAAGA--T-CTGT-TTTG
* *
74918758 ATCTGCTCCACTGCAA-TCTCAGGGAAACAAGATCT
1 ATCTGCTCCACTGCAACT-TCAGAGAGACAAGATCT
74918793 ACAATCTTCA
Statistics
Matches: 105, Mismatches: 12, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
41 32 0.30
42 2 0.02
43 5 0.05
44 1 0.01
45 28 0.27
48 28 0.27
50 6 0.06
51 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (41 bp):
ATCTGCTCCACTGCAACTTCAGAGAGACAAGATCTGTTTTG
Found at i:74930725 original size:131 final size:132
Alignment explanation
Indices: 74930525--74930891 Score: 366
Period size: 132 Copynumber: 2.8 Consensus size: 132
74930515 TATTGAAAGG
** * * * * * *
74930525 TTTTTAATAA-ACATGCGTGAAAACCTAAAGGAATATTCGATTGTTTTGAGCAGACGAGGAATTA
1 TTTTTAA-AAGACATGCGTGAAAATTTGAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTG
* * * * * * * *
74930589 TAACCCAGCACGATAGGG-AATGATTCC-CGAATTGTCAAACGCCAAATTTTACCTTCGTTTTAA
65 CAACCCAGCACGTTAGGGCAAT-ATTCCGCAAATTGCCAAACACCAAATATCACCTTCATTTTAA
74930652 ATG-A
129 A-GAA
* * * *
74930656 TTTTTAGAAGATATGCGTGAAAATTTGAAGGGATATTTGATTATTTTAAGCAAACGAGAAATTGC
1 TTTTTAAAAGACATGCGTGAAAATTTGAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGC
* * * * **
74930721 AACCCAGCACGTTAGGGCACTATTCCGCAAATTGCCAAATATCGAATATCGTCTTCATTTTAAAG
66 AACCCAGCACGTTAGGGCAATATTCCGCAAATTGCCAAACACCAAATATCACCTTCATTTTAAAG
74930786 AA
131 AA
* * * *
74930788 TTTTTAAAAGGCATGAGTGAAATTTTGAAGGGATATTCGATTATTTTGAGCAAACGAGAATTTGC
1 TTTTTAAAAGACATGCGTGAAAATTTGAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGC
* * *
74930853 AACCCAACACGTTAGGGCACTATTCTGCGAAA-TGCCAAA
66 AACCCAGCACGTTAGGGCAATATTCCGC-AAATTGCCAAA
74930892 TATCGAGTCT
Statistics
Matches: 195, Mismatches: 36, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
130 2 0.01
131 71 0.36
132 119 0.61
133 3 0.02
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (132 bp):
TTTTTAAAAGACATGCGTGAAAATTTGAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGC
AACCCAGCACGTTAGGGCAATATTCCGCAAATTGCCAAACACCAAATATCACCTTCATTTTAAAG
AA
Found at i:74930822 original size:132 final size:132
Alignment explanation
Indices: 74930641--74930926 Score: 423
Period size: 132 Copynumber: 2.2 Consensus size: 132
74930631 CAAATTTTAC
* * * *
74930641 CTTCGTTTTAAATG-ATTTTTAGAAGATATGCGTGAAAATTTGAAGGGATATTTGATTATTTTAA
1 CTTCGTTTTAAA-GAATTTTTAAAAGACATGAGTGAAAATTTGAAGGGATATTCGATTATTTTAA
*
74930705 GCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACTATTCCGC-AAATTGCCAAATATCGAATA
65 GCAAACGAGAAATTGCAACCCAACACGTTAGGGCACTATTCCGCGAAA-TGCCAAATATCGAATA
74930769 TCGT
129 TCGT
* * * *
74930773 CTTCATTTTAAAGAATTTTTAAAAGGCATGAGTGAAATTTTGAAGGGATATTCGATTATTTTGAG
1 CTTCGTTTTAAAGAATTTTTAAAAGACATGAGTGAAAATTTGAAGGGATATTCGATTATTTTAAG
* * * *
74930838 CAAACGAGAATTTGCAACCCAACACGTTAGGGCACTATTCTGCGAAATGCCAAATATCGAGTCTC
66 CAAACGAGAAATTGCAACCCAACACGTTAGGGCACTATTCCGCGAAATGCCAAATATCGAATATC
74930903 GT
131 GT
74930905 CTTCGTTTTAAAGAATTTTTAA
1 CTTCGTTTTAAAGAATTTTTAA
74930927 TAATTGTGAA
Statistics
Matches: 138, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
131 1 0.01
132 134 0.97
133 3 0.02
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.33
Consensus pattern (132 bp):
CTTCGTTTTAAAGAATTTTTAAAAGACATGAGTGAAAATTTGAAGGGATATTCGATTATTTTAAG
CAAACGAGAAATTGCAACCCAACACGTTAGGGCACTATTCCGCGAAATGCCAAATATCGAATATC
GT
Found at i:74932625 original size:3 final size:3
Alignment explanation
Indices: 74932617--74932654 Score: 58
Period size: 3 Copynumber: 12.0 Consensus size: 3
74932607 AAAAAGTAAC
74932617 AAT AAT AAT AAT AAT AAT AAT AAT AAAT CAAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT -AAT AAT AAT
74932655 GATGATGATG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
3 27 0.82
4 6 0.18
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:74934699 original size:13 final size:13
Alignment explanation
Indices: 74934681--74934708 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
74934671 CTCAAAGAAT
74934681 TTCTTCATGAAAC
1 TTCTTCATGAAAC
74934694 TTCTTCATGAAAC
1 TTCTTCATGAAAC
74934707 TT
1 TT
74934709 TAACACATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (13 bp):
TTCTTCATGAAAC
Found at i:74934734 original size:14 final size:14
Alignment explanation
Indices: 74934715--74934744 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
74934705 ACTTTAACAC
74934715 ATGCATATTCTCAT
1 ATGCATATTCTCAT
74934729 ATGCATATTCTCAT
1 ATGCATATTCTCAT
74934743 AT
1 AT
74934745 TCTAAACCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (14 bp):
ATGCATATTCTCAT
Found at i:74942760 original size:55 final size:55
Alignment explanation
Indices: 74942677--74942785 Score: 218
Period size: 55 Copynumber: 2.0 Consensus size: 55
74942667 AAACTTACCC
74942677 TTTTTTTTAAACTGTGCACAGGTAATCTCCAGACTTGACGGATAGGTGCAGCGGT
1 TTTTTTTTAAACTGTGCACAGGTAATCTCCAGACTTGACGGATAGGTGCAGCGGT
74942732 TTTTTTTTAAACTGTGCACAGGTAATCTCCAGACTTGACGGATAGGTGCAGCGG
1 TTTTTTTTAAACTGTGCACAGGTAATCTCCAGACTTGACGGATAGGTGCAGCGG
74942786 AGGACTCGAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (55 bp):
TTTTTTTTAAACTGTGCACAGGTAATCTCCAGACTTGACGGATAGGTGCAGCGGT
Found at i:74951046 original size:42 final size:42
Alignment explanation
Indices: 74950994--74951078 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
74950984 ATCAGCAACC
*
74950994 AACACCCTCCAAGCCCCTAACCTCAAATATTATCCAGAATTT
1 AACAACCTCCAAGCCCCTAACCTCAAATATTATCCAGAATTT
*
74951036 AACAACCTCCAAGCCCCTAACCTCAAATATTTTCCAGAATTT
1 AACAACCTCCAAGCCCCTAACCTCAAATATTATCCAGAATTT
74951078 A
1 A
74951079 GTCGTTTTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.36, C:0.34, G:0.05, T:0.25
Consensus pattern (42 bp):
AACAACCTCCAAGCCCCTAACCTCAAATATTATCCAGAATTT
Found at i:74954100 original size:17 final size:17
Alignment explanation
Indices: 74954080--74954117 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
74954070 GCTTACTTAT
*
74954080 TTTTCTTTATTTATTTC
1 TTTTCATTATTTATTTC
*
74954097 TTTTCATTATTTATTTG
1 TTTTCATTATTTATTTC
74954114 TTTT
1 TTTT
74954118 TATTCCCTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.13, C:0.08, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTCATTATTTATTTC
Found at i:74958030 original size:27 final size:26
Alignment explanation
Indices: 74958000--74958053 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
74957990 AACAAATTAG
74958000 TATACAAAACAATTCGAAATGAAATAA
1 TATACAAAACAATTCGAAAT-AAATAA
* * **
74958027 TATATAAAGCAATTTTAAATAAATAA
1 TATACAAAACAATTCGAAATAAATAA
74958053 T
1 T
74958054 TTATGAAGTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.57, C:0.07, G:0.06, T:0.30
Consensus pattern (26 bp):
TATACAAAACAATTCGAAATAAATAA
Found at i:74959510 original size:35 final size:35
Alignment explanation
Indices: 74959432--74959546 Score: 146
Period size: 34 Copynumber: 3.3 Consensus size: 35
74959422 GAATTTGGGC
*
74959432 TTTA-GGGTTTTTTATTTTGGGTTTTAAGTTTGGG
1 TTTATGGGTTTTTTATTTTGGGTTTTAAGTTTAGG
* * *
74959466 CTGAT-GGTTTTTTATTTTGGGTTTTAAGTTTAGA
1 TTTATGGGTTTTTTATTTTGGGTTTTAAGTTTAGG
**
74959500 TTTATGGGTTTTGAATTTTGGGTTTTTAA-TTTAGG
1 TTTATGGGTTTTTTATTTTGGG-TTTTAAGTTTAGG
74959535 TTTATGGGTTTT
1 TTTATGGGTTTT
74959547 GAATTTTGTA
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
34 32 0.46
35 31 0.45
36 6 0.09
ACGTcount: A:0.15, C:0.01, G:0.26, T:0.58
Consensus pattern (35 bp):
TTTATGGGTTTTTTATTTTGGGTTTTAAGTTTAGG
Found at i:74959521 original size:14 final size:15
Alignment explanation
Indices: 74959499--74959532 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
74959489 TTAAGTTTAG
74959499 ATTTATGGGTTTTGA
1 ATTTATGGGTTTTGA
*
74959514 ATTT-TGGGTTTTTA
1 ATTTATGGGTTTTGA
74959528 ATTTA
1 ATTTA
74959533 GGTTTATGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.59
Consensus pattern (15 bp):
ATTTATGGGTTTTGA
Found at i:74959547 original size:35 final size:35
Alignment explanation
Indices: 74959432--74959554 Score: 144
Period size: 35 Copynumber: 3.6 Consensus size: 35
74959422 GAATTTGGGC
** *
74959432 TTTA-GGGTTTTTTATTTTGGGTTTTAAGTTTGGG
1 TTTATGGGTTTTGAATTTTGGGTTTTAAGTTTAGG
* * ** *
74959466 CTGAT-GGTTTTTTATTTTGGGTTTTAAGTTTAGA
1 TTTATGGGTTTTGAATTTTGGGTTTTAAGTTTAGG
74959500 TTTATGGGTTTTGAATTTTGGGTTTTTAA-TTTAGG
1 TTTATGGGTTTTGAATTTTGGG-TTTTAAGTTTAGG
74959535 TTTATGGGTTTTGAATTTTG
1 TTTATGGGTTTTGAATTTTG
74959555 TAACTGGACT
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
34 32 0.42
35 39 0.51
36 6 0.08
ACGTcount: A:0.15, C:0.01, G:0.26, T:0.58
Consensus pattern (35 bp):
TTTATGGGTTTTGAATTTTGGGTTTTAAGTTTAGG
Found at i:74960428 original size:44 final size:45
Alignment explanation
Indices: 74960339--74960444 Score: 124
Period size: 44 Copynumber: 2.4 Consensus size: 45
74960329 GCTCTACTCT
* * * ** * *
74960339 AACTTCAGAGAGATAAGATTTGCTATCTTCAGTCTGCTTCGCTGC
1 AACTTCAGGGAGATAAGACTTGCTAACTTCAACCTGCTCCACTGC
*
74960384 AACTTCAGGGAGATATGACTTG-TAACTTCAACCTGCTCCACTGC
1 AACTTCAGGGAGATAAGACTTGCTAACTTCAACCTGCTCCACTGC
*
74960428 AACTTTAGGGAGATAAG
1 AACTTCAGGGAGATAAG
74960445 GTTAGTGGCT
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
44 32 0.63
45 19 0.37
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (45 bp):
AACTTCAGGGAGATAAGACTTGCTAACTTCAACCTGCTCCACTGC
Found at i:74960650 original size:44 final size:44
Alignment explanation
Indices: 74960531--74960636 Score: 167
Period size: 44 Copynumber: 2.4 Consensus size: 44
74960521 TTAGGGAAAC
* *
74960531 AAGATCTACAATCTTCAGTCTGCTTCCTTGCTATATCAGGAAGAT
1 AAGA-CTACAATCTTCAGTCTGCTTCCTTGCTACATCAAGAAGAT
* *
74960576 AAGATTACAATCTTCAGTCTGCTTCCTTGCTACATCAAGTAGAT
1 AAGACTACAATCTTCAGTCTGCTTCCTTGCTACATCAAGAAGAT
74960620 AAGACTACAATCTTCAG
1 AAGACTACAATCTTCAG
74960637 CCTGTACCCT
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
44 52 0.93
45 4 0.07
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (44 bp):
AAGACTACAATCTTCAGTCTGCTTCCTTGCTACATCAAGAAGAT
Found at i:74960780 original size:44 final size:43
Alignment explanation
Indices: 74960732--74961130 Score: 292
Period size: 44 Copynumber: 9.2 Consensus size: 43
74960722 CGATCTGTTT
* *
74960732 CACTACTGCTTAGGGAGATAAGATCTATAATCTTCAGCCTACTC
1 CACTACTGCTTAGGGAGATAAGAT-TGTAATCTTCAGTCTACTC
* * ** * * *
74960776 CACTACTGCTTAGGGAGATAGGATGGT-GGCTTAAATCTGCTC
1 CACTACTGCTTAGGGAGATAAGATTGTAATCTTCAGTCTACTC
* * * *
74960818 CACTACTGCTTAGGGAGACAAGATT-CACCGTCTTC-GATCTGCTC
1 CACTACTGCTTAGGGAGATAAGATTGTA--ATCTTCAG-TCTACTC
* * * *
74960862 CACTACTACTTAAGGAGATGAGATCTGTAATCTTCAGCCTACTC
1 CACTACTGCTTAGGGAGATAAGAT-TGTAATCTTCAGTCTACTC
* * * ** * * *
74960906 CACTAATGCTTAGGGAGATAGGATGGT-GGCTTAAATCTGCTC
1 CACTACTGCTTAGGGAGATAAGATTGTAATCTTCAGTCTACTC
* * *
74960948 CAC-ACTGCTTAGGGAGACAAGATT-CACCATCTTC-GATCTGCTC
1 CACTACTGCTTAGGGAGATAAGATTGTA--ATCTTCAG-TCTACTC
* * *
74960991 CACTATTGCTTAGGGAGATAAGATCCGTAATCTTCAGCCTACTC
1 CACTACTGCTTAGGGAGATAAGAT-TGTAATCTTCAGTCTACTC
* * ** * *
74961035 CACTACTGCTTAGGGAGATAGGATGGT-GGCTTAAATCTACTC
1 CACTACTGCTTAGGGAGATAAGATTGTAATCTTCAGTCTACTC
* *
74961077 CACTACTGCTTAGGGAGACAAGATCTGTAATCTTCAGCCTACTC
1 CACTACTGCTTAGGGAGATAAGAT-TGTAATCTTCAGTCTACTC
*
74961121 CACTGCTGCT
1 CACTACTGCT
74961131 CAAGGAGACA
Statistics
Matches: 270, Mismatches: 68, Indels: 34
0.73 0.18 0.09
Matches are distributed among these distances:
41 17 0.06
42 75 0.28
43 20 0.07
44 153 0.57
45 3 0.01
46 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (43 bp):
CACTACTGCTTAGGGAGATAAGATTGTAATCTTCAGTCTACTC
Found at i:74960857 original size:130 final size:130
Alignment explanation
Indices: 74960699--74961100 Score: 689
Period size: 130 Copynumber: 3.1 Consensus size: 130
74960689 TCGCTACCTC
* * * *
74960699 AGGGGGACAAGATTCACCGTCTTCGATCTGTTTCACTACTGCTTAGGGAGATAAGATCTATAATC
1 AGGGAGACAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
74960764 TTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTT
66 TTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTT
* * *
74960829 AGGGAGACAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAAGGAGATGAGATCTGTAATC
1 AGGGAGACAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
*
74960894 TTCAGCCTACTCCACTAATGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCAC-ACTGCTT
66 TTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTT
* * *
74960958 AGGGAGACAAGATTCACCATCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCCGTAATC
1 AGGGAGACAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
*
74961023 TTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTT
66 TTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTT
74961088 AGGGAGACAAGAT
1 AGGGAGACAAGAT
74961101 CTGTAATCTT
Statistics
Matches: 255, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
129 121 0.47
130 134 0.53
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.28
Consensus pattern (130 bp):
AGGGAGACAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
TTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTT
Found at i:74962481 original size:3 final size:3
Alignment explanation
Indices: 74962473--74962552 Score: 160
Period size: 3 Copynumber: 26.7 Consensus size: 3
74962463 TCTCTTATTT
74962473 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
74962521 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
74962553 TTGGCATCAT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 77 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:74967890 original size:27 final size:26
Alignment explanation
Indices: 74967860--74967913 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
74967850 AACAAATTAG
74967860 TATACAAAACAATTTGAAATGAAATAA
1 TATACAAAACAATTTGAAAT-AAATAA
* * *
74967887 TATATAAAGCAATTTTAAATAAATAA
1 TATACAAAACAATTTGAAATAAATAA
74967913 T
1 T
74967914 TCATGAAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (26 bp):
TATACAAAACAATTTGAAATAAATAA
Found at i:74969344 original size:34 final size:35
Alignment explanation
Indices: 74969293--74969364 Score: 119
Period size: 34 Copynumber: 2.1 Consensus size: 35
74969283 GGCCATAGAA
*
74969293 TTTGGGCTTTATGGTTTTTTATTTTGGGTTTTAAG
1 TTTGGGCTTGATGGTTTTTTATTTTGGGTTTTAAG
*
74969328 TTTGGGC-TGATGGTTTTTTGTTTTGGGTTTTAAG
1 TTTGGGCTTGATGGTTTTTTATTTTGGGTTTTAAG
74969362 TTT
1 TTT
74969365 ATGTTTATGG
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
34 28 0.80
35 7 0.20
ACGTcount: A:0.10, C:0.03, G:0.28, T:0.60
Consensus pattern (35 bp):
TTTGGGCTTGATGGTTTTTTATTTTGGGTTTTAAG
Found at i:74969802 original size:156 final size:155
Alignment explanation
Indices: 74969551--74969851 Score: 435
Period size: 156 Copynumber: 1.9 Consensus size: 155
74969541 TTTTTTTTAT
* *** * *
74969551 AAAAAAGAGAAAGTTTAGATTTTTATTTTAAAAATCTATTTTTTAGTCATATTAAAGGAAAAGTT
1 AAAAAAGAGAAAGTCTAGATTTTTAAACTAAAAATATATTTTTTAGTCATATTAAAGGAAAACTT
* *
74969616 TAAATTCTTAAAATAAAGTTCTGATCTTTTTTAACTATTTCGATATAAAATTTTGATTTTTAAGA
66 TAAATTCTTAAAATAAAGTTCTGATCTTTTTCAACTATTTCGAAATAAAATTTTGATTTTTAAGA
*
74969681 AAAATAGTGATTTTTTTAAATAAAA
131 AAAATAGTAATTTTTTTAAATAAAA
* *
74969706 AAAAAAGAGAAAGTCTAGATTTTTTAAACTAAAAATATGTTTTTTAGTCATTTTAAA-GAAAATC
1 AAAAAAGAGAAAGTCTAGA-TTTTTAAACTAAAAATATATTTTTTAGTCATATTAAAGGAAAA-C
* *
74969770 TTTAAATTTTTGAAAATAAAGTTTTGAT-TTTTTCAACTATTTCGAAATAAAATTTTGATTTTTA
64 TTTAAATTCTT-AAAATAAAGTTCTGATCTTTTTCAACTATTTCGAAATAAAATTTTGATTTTTA
*
74969834 AGAAAAGTAGTAATTTTT
128 AGAAAAATAGTAATTTTT
74969852 AAAAAAAAAT
Statistics
Matches: 129, Mismatches: 14, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
155 23 0.18
156 91 0.71
157 15 0.12
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.43
Consensus pattern (155 bp):
AAAAAAGAGAAAGTCTAGATTTTTAAACTAAAAATATATTTTTTAGTCATATTAAAGGAAAACTT
TAAATTCTTAAAATAAAGTTCTGATCTTTTTCAACTATTTCGAAATAAAATTTTGATTTTTAAGA
AAAATAGTAATTTTTTTAAATAAAA
Found at i:74973921 original size:16 final size:16
Alignment explanation
Indices: 74973900--74973933 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
74973890 CCCCTCTTGG
*
74973900 TTCTACTAACCCGATT
1 TTCTACTAACCCAATT
74973916 TTCTACTAACCCAATT
1 TTCTACTAACCCAATT
74973932 TT
1 TT
74973934 TGGGATGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.29, G:0.03, T:0.41
Consensus pattern (16 bp):
TTCTACTAACCCAATT
Found at i:74978500 original size:7 final size:8
Alignment explanation
Indices: 74978480--74978507 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
74978470 CTTTCTATTT
74978480 ATTTTTGA
1 ATTTTTGA
74978488 ATTTTTGA
1 ATTTTTGA
74978496 ATTTTTGA
1 ATTTTTGA
74978504 ATTT
1 ATTT
74978508 AAAATTACGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.11, T:0.64
Consensus pattern (8 bp):
ATTTTTGA
Found at i:74978584 original size:21 final size:21
Alignment explanation
Indices: 74978558--74978598 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
74978548 TATATTATAA
74978558 AAATAAAATTTTTA-TATTTTC
1 AAAT-AAATTTTTATTATTTTC
*
74978579 AAATAATTTTTTATTATTTT
1 AAATAAATTTTTATTATTTT
74978599 TAAAATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (21 bp):
AAATAAATTTTTATTATTTTC
Found at i:74978604 original size:22 final size:22
Alignment explanation
Indices: 74978543--74978610 Score: 59
Period size: 22 Copynumber: 3.1 Consensus size: 22
74978533 ATATTTTATA
* * *
74978543 TTTTATATATTATAAAAATAAAAT
1 TTTTAT-TATTTTTAAAAT-AATT
*
74978567 TTTTA-TA-TTTTCAAATAATT
1 TTTTATTATTTTTAAAATAATT
*
74978587 TTTTATTATTTTTAAAATTATT
1 TTTTATTATTTTTAAAATAATT
74978609 TT
1 TT
74978611 ACTTAAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
20 8 0.22
21 8 0.22
22 15 0.42
24 5 0.14
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (22 bp):
TTTTATTATTTTTAAAATAATT
Found at i:74981651 original size:12 final size:12
Alignment explanation
Indices: 74981634--74981658 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
74981624 ACCCAAAACC
74981634 CTTAGCCCAAAA
1 CTTAGCCCAAAA
74981646 CTTAGCCCAAAA
1 CTTAGCCCAAAA
74981658 C
1 C
74981659 ACTAACCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.36, G:0.08, T:0.16
Consensus pattern (12 bp):
CTTAGCCCAAAA
Found at i:74982383 original size:3 final size:3
Alignment explanation
Indices: 74982375--74982416 Score: 75
Period size: 3 Copynumber: 13.7 Consensus size: 3
74982365 TGCATTTTAA
74982375 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA
74982417 GTGTATATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:74982659 original size:16 final size:15
Alignment explanation
Indices: 74982628--74982670 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
74982618 CCTTCATTCC
*
74982628 ATTATTATTATTACT
1 ATTATTATTTTTACT
74982643 ATTATTATATTTTACT
1 ATTATTAT-TTTTACT
*
74982659 ATCATTATTTTT
1 ATTATTATTTTT
74982671 CATACGTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTACT
Found at i:74982814 original size:3 final size:3
Alignment explanation
Indices: 74982806--74983032 Score: 78
Period size: 3 Copynumber: 76.3 Consensus size: 3
74982796 TTCTCATCAC
* * *
74982806 TAT TAT TAT AATT TAT TAT TGT TACT TAT TAT T-T TAC TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
74982852 CTAA T-T TAT CAT CAT TAT CAT TAT T-T TCAT TAT AACT TAA TA- GAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TA-T TAT TAT TAT
* * * *
74982897 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAG CAC TACT T-T TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT
* * * ** * * *
74982942 TAT TAT T-T AAT ATAT TAT TTT TAC TAT TAT CGT CA- TAT TGT TAC
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
74982986 TAT TAC TAT TA- TAT TAT TA- TGT TAT TA- TAT CTTT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
74983029 TAT T
1 TAT T
74983033 GTTGTATTTT
Statistics
Matches: 160, Mismatches: 46, Indels: 36
0.66 0.19 0.15
Matches are distributed among these distances:
2 15 0.09
3 129 0.81
4 16 0.10
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:74982848 original size:11 final size:13
Alignment explanation
Indices: 74982818--74982849 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
74982808 TTATTATAAT
74982818 TTATTATTGTTAC
1 TTATTATTGTTAC
74982831 TTATTATT-TTAC
1 TTATTATTGTTAC
74982843 -TATTATT
1 TTATTATT
74982850 ATCTAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.37
12 4 0.21
13 8 0.42
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.66
Consensus pattern (13 bp):
TTATTATTGTTAC
Found at i:74983047 original size:22 final size:22
Alignment explanation
Indices: 74983017--74983077 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
74983007 TTATTATATC
*
74983017 TTTTACTATTATTATTGTTGTA
1 TTTTACTATTATTATTGTTATA
* * *
74983039 TTTTTCTATTATTGTTATTATA
1 TTTTACTATTATTATTGTTATA
* *
74983061 TTTTCCT-TTATTTTTGT
1 TTTTACTATTATTATTGT
74983078 ATTTACTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.18, C:0.07, G:0.07, T:0.69
Consensus pattern (22 bp):
TTTTACTATTATTATTGTTATA
Found at i:74983051 original size:3 final size:3
Alignment explanation
Indices: 74982511--74982549 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
74982501 TGTATTTCTA
74982511 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
74982550 ATGGTAGTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:74983592 original size:54 final size:54
Alignment explanation
Indices: 74983510--74983617 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
74983500 AACCTAAATA
74983510 ACGGCATATTCTTTTAAATCATAATACAAGTGTTAAATAAAATACTTACTCTCT
1 ACGGCATATTCTTTTAAATCATAATACAAGTGTTAAATAAAATACTTACTCTCT
74983564 ACGGCATATTCTTTTAAATCATAATACAAGTGTTAAATAAAATACTTACTCTCT
1 ACGGCATATTCTTTTAAATCATAATACAAGTGTTAAATAAAATACTTACTCTCT
74983618 GATATTTGAG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.37
Consensus pattern (54 bp):
ACGGCATATTCTTTTAAATCATAATACAAGTGTTAAATAAAATACTTACTCTCT
Found at i:75000319 original size:23 final size:22
Alignment explanation
Indices: 75000293--75000358 Score: 54
Period size: 23 Copynumber: 3.2 Consensus size: 22
75000283 ATGTTTTTTT
75000293 AATATTTTATCACACCTTTATAG
1 AATATTTTATCACA-CTTTATAG
**
75000316 AATAACTTATCA-A--TT-T--
1 AATATTTTATCACACTTTATAG
75000332 AATATTTTATCACATCTTTATAG
1 AATATTTTATCACA-CTTTATAG
75000355 AATA
1 AATA
75000359 ACTTATCAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 14
0.64 0.08 0.28
Matches are distributed among these distances:
16 10 0.31
17 1 0.03
18 1 0.03
19 2 0.06
20 2 0.06
21 1 0.03
22 1 0.03
23 14 0.44
ACGTcount: A:0.39, C:0.14, G:0.03, T:0.44
Consensus pattern (22 bp):
AATATTTTATCACACTTTATAG
Found at i:75000379 original size:39 final size:39
Alignment explanation
Indices: 75000290--75000368 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
75000280 ATAATGTTTT
75000290 TTTAATATTTTATCACACCTTTATAGAATAACTTATCAA
1 TTTAATATTTTATCACACCTTTATAGAATAACTTATCAA
*
75000329 TTTAATATTTTATCACATCTTTATAGAATAACTTATCAA
1 TTTAATATTTTATCACACCTTTATAGAATAACTTATCAA
75000368 T
1 T
75000369 CCTTAATTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.38, C:0.14, G:0.03, T:0.46
Consensus pattern (39 bp):
TTTAATATTTTATCACACCTTTATAGAATAACTTATCAA
Found at i:75008084 original size:49 final size:49
Alignment explanation
Indices: 75008029--75008124 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
75008019 GAAACATCCC
*
75008029 TTAGTTCATATCTTTGATGTTGAGGAAAAGAAAATATATTTCTTAAAGT
1 TTAGTTCATATCTTTGATGTTCAGGAAAAGAAAATATATTTCTTAAAGT
75008078 TTAGTTCATATCTTTGATGTTCAGGAAAAGAAAATATATTTCTTAAA
1 TTAGTTCATATCTTTGATGTTCAGGAAAAGAAAATATATTTCTTAAA
75008125 ACTTGAGCAC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.38, C:0.07, G:0.15, T:0.41
Consensus pattern (49 bp):
TTAGTTCATATCTTTGATGTTCAGGAAAAGAAAATATATTTCTTAAAGT
Found at i:75022076 original size:21 final size:21
Alignment explanation
Indices: 75022050--75022090 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
75022040 ATCTGCTCAA
* *
75022050 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
75022071 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
75022091 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:75025162 original size:3 final size:3
Alignment explanation
Indices: 75025154--75025185 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
75025144 ACTAATCTCA
75025154 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
75025186 ACCCCTTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:75032601 original size:26 final size:26
Alignment explanation
Indices: 75032572--75032679 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
75032562 TGATATAAAT
75032572 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
75032598 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75032624 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
75032650 TGATAATGGGTTAGGTAGATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75032676 TGAT
1 TGAT
75032680 GGGAATTTCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.30, C:0.06, G:0.28, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:75034314 original size:27 final size:26
Alignment explanation
Indices: 75034274--75034414 Score: 126
Period size: 27 Copynumber: 5.2 Consensus size: 26
75034264 AGGAAGCGTC
75034274 CTGGTGGC-CATGCCATAATTATCTGAT
1 CTGGTGGCTC-TGCCA-AATTATCTGAT
* *
75034301 TTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTCTGCCAAAT-TATCTGAT
*
75034327 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCA-AATTATCTGAT
** *
75034355 CTGGTGGCTCTGCCACGTATATCTGTT
1 CTGGTGGCTCTGCCAAAT-TATCTGAT
*
75034382 CTGGTGGCTCTACCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCA-AATTATCTG-AT
75034409 CTGGTG
1 CTGGTG
75034415 ACTTCGTCAC
Statistics
Matches: 93, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
26 10 0.11
27 79 0.85
28 4 0.04
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCAAATTATCTGAT
Found at i:75034353 original size:54 final size:54
Alignment explanation
Indices: 75034271--75034414 Score: 209
Period size: 54 Copynumber: 2.7 Consensus size: 54
75034261 TGGAGGAAGC
* * *
75034271 GTCCTGGTGGCCATGCCATAATTATCTGATTTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
75034325 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACGTATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
75034379 GTTCTGGTGGCTCTACCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
75034415 ACTTCGTCAC
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 6 0.07
54 76 0.93
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:75035732 original size:49 final size:48
Alignment explanation
Indices: 75035526--75035722 Score: 290
Period size: 48 Copynumber: 4.1 Consensus size: 48
75035516 TTATGTAATC
**
75035526 CAATGTACCTAATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTG
1 CAATGTATTTAATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTG
* *
75035574 TAATGTATTTAATTTATATTATAAAGTTTGTTCCAAGTTTTAATGTTG
1 CAATGTATTTAATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTG
*
75035622 TC-ATGTATTTAATTTATATTACAAATTTTGTTCCAAGTTTTAATGTTG
1 -CAATGTATTTAATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTG
**
75035670 CAAT-TAATTTAATTTATGACCACAAAGTTTGTTCCAAGTTTTAATGTTG
1 CAATGT-ATTTAATTTAT-ATTACAAAGTTTGTTCCAAGTTTTAATGTTG
75035719 CAAT
1 CAAT
75035723 TAATCTAATT
Statistics
Matches: 135, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
47 2 0.01
48 101 0.75
49 32 0.24
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.47
Consensus pattern (48 bp):
CAATGTATTTAATTTATATTACAAAGTTTGTTCCAAGTTTTAATGTTG
Found at i:75038177 original size:16 final size:16
Alignment explanation
Indices: 75038158--75038230 Score: 53
Period size: 16 Copynumber: 4.4 Consensus size: 16
75038148 ATAACACGCC
75038158 AAATAAATTACATAAA
1 AAATAAATTACATAAA
75038174 AAATAAATCTA-ATAAA
1 AAATAAAT-TACATAAA
* * *
75038190 CCTAAA-ACA-CACATAAC
1 ---AAATAAATTACATAAA
75038207 AAATAAATTACATAAAA
1 AAATAAATTACAT-AAA
75038224 AAATAAA
1 AAATAAA
75038231 ACATTCTTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 15
0.67 0.09 0.23
Matches are distributed among these distances:
14 3 0.07
15 2 0.05
16 18 0.42
17 15 0.35
18 2 0.05
19 3 0.07
ACGTcount: A:0.67, C:0.12, G:0.00, T:0.21
Consensus pattern (16 bp):
AAATAAATTACATAAA
Found at i:75038562 original size:12 final size:12
Alignment explanation
Indices: 75038547--75038590 Score: 56
Period size: 12 Copynumber: 3.7 Consensus size: 12
75038537 TCTATTTATT
75038547 TTTTTCCTTCTC
1 TTTTTCCTTCTC
75038559 TTTTTCCTTCCCTC
1 TTTTTCCTT--CTC
75038573 TTTTT-CTT-TC
1 TTTTTCCTTCTC
75038583 TTTTTCCT
1 TTTTTCCT
75038591 CTTCCCGCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 7 0.24
11 2 0.07
12 9 0.31
13 3 0.10
14 8 0.28
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTTTCCTTCTC
Found at i:75042635 original size:32 final size:32
Alignment explanation
Indices: 75042598--75042660 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
75042588 ATTTAAACGT
75042598 TAATGTCTAAATTAAAAATTTTAAAAATTGAA
1 TAATGTCTAAATTAAAAATTTTAAAAATTGAA
*
75042630 TAATGTCTAAATTGAAAATTTTAAAAATTGA
1 TAATGTCTAAATTAAAAATTTTAAAAATTGA
75042661 GTTACCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (32 bp):
TAATGTCTAAATTAAAAATTTTAAAAATTGAA
Found at i:75042657 original size:16 final size:16
Alignment explanation
Indices: 75042606--75042660 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
75042596 GTTAATGTCT
*
75042606 AAATTAAAAATTTTAA
1 AAATTGAAAATTTTAA
*
75042622 AAATTGAATAATGTCT--
1 AAATTGAA-AAT-TTTAA
75042638 AAATTGAAAATTTTAA
1 AAATTGAAAATTTTAA
75042654 AAATTGA
1 AAATTGA
75042661 GTTACCAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
14 2 0.06
15 3 0.09
16 22 0.69
17 3 0.09
18 2 0.06
ACGTcount: A:0.55, C:0.02, G:0.07, T:0.36
Consensus pattern (16 bp):
AAATTGAAAATTTTAA
Found at i:75055720 original size:27 final size:27
Alignment explanation
Indices: 75055683--75055845 Score: 206
Period size: 27 Copynumber: 6.0 Consensus size: 27
75055673 AGCATGGCTG
* *
75055683 CCAGAACAGATA-ATGTGACAGAGTCA
1 CCAGAACAGATATATGTGGCAGAGCCA
75055709 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGA-ACAGATATAT-GTGGCAGAGCCA
*
75055737 CCAGAAAAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* * *
75055764 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
75055791 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* *
75055818 CCAGATCAGATA-ATTGTGGCATAGCCA
1 CCAGAACAGATATA-TGTGGCAGAGCCA
75055845 C
1 C
75055846 TAGGACGCTT
Statistics
Matches: 121, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
26 6 0.05
27 98 0.81
28 17 0.14
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:75055742 original size:54 final size:54
Alignment explanation
Indices: 75055683--75055845 Score: 256
Period size: 54 Copynumber: 3.0 Consensus size: 54
75055673 AGCATGGCTG
* * * *
75055683 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
* *
75055737 CCAGAAAAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
75055791 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
75055845 C
1 C
75055846 TAGGACGCTT
Statistics
Matches: 100, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
54 82 0.82
55 18 0.18
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
Found at i:75057504 original size:26 final size:26
Alignment explanation
Indices: 75057468--75057577 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
75057458 CATGAAATTC
75057468 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
75057494 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
75057520 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
75057546 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
75057572 TTATCA
1 TTATCA
75057578 ATTTGTACCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:75064336 original size:21 final size:20
Alignment explanation
Indices: 75064282--75064336 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
75064272 GATAGCAGAA
75064282 GAGAAGAAAAAAG--AGAGG
1 GAGAAGAAAAAAGAAAGAGG
*
75064300 GAGGAA-AAAGAAAGAAAGAATG
1 GA-GAAGAAA-AAAGAAAG-AGG
75064322 GAGAAGAAAAAAGAA
1 GAGAAGAAAAAAGAA
75064337 GGATTATGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
18 5 0.17
19 7 0.23
21 11 0.37
22 7 0.23
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (20 bp):
GAGAAGAAAAAAGAAAGAGG
Found at i:75064417 original size:10 final size:11
Alignment explanation
Indices: 75064389--75064428 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
75064379 TTGTTTATTG
75064389 TTATTTTT-AT
1 TTATTTTTAAT
*
75064399 GTTGTTTTTAAT
1 -TTATTTTTAAT
75064411 TTATTTTTAAT
1 TTATTTTTAAT
75064422 TTATTTT
1 TTATTTT
75064429 GTTAGTAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
11 24 0.92
12 2 0.08
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.75
Consensus pattern (11 bp):
TTATTTTTAAT
Found at i:75064578 original size:113 final size:114
Alignment explanation
Indices: 75064445--75064655 Score: 264
Period size: 113 Copynumber: 1.9 Consensus size: 114
75064435 AACTATTATA
* * * * *
75064445 AATTGCTTGTTTAGTTTAATGTCGATGAAGATTTGTTAGGTTATGAGTGTAAAGTTTT-ATGA-A
1 AATTGCTTGTTTAGTCTAATGTCGATGAAGATCTATTAGGTTATAAATGTAAAGTTTTAAT-ATA
75064508 TTATTAATTTATTTTAAAGTAATTTTGTTAGTAATTTTTGTGATTAGGTT
65 TTATTAATTTATTTTAAAGTAATTTTGTTAGTAATTTTTGTGATTAGGTT
* * ** ** * *
75064558 AATTGTTTGTTTGGTCTAATGTTTATGGTGATCTATTAGGTTATAAATGTAATGTTTTAATATTT
1 AATTGCTTGTTTAGTCTAATGTCGATGAAGATCTATTAGGTTATAAATGTAAAGTTTTAATATAT
* *
75064623 TTTTAATTTATTTTAAAGTTATTTTGTTAGTAA
66 TATTAATTTATTTTAAAGTAATTTTGTTAGTAA
75064656 CTATTATAAA
Statistics
Matches: 81, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
113 47 0.58
114 34 0.42
ACGTcount: A:0.28, C:0.02, G:0.18, T:0.53
Consensus pattern (114 bp):
AATTGCTTGTTTAGTCTAATGTCGATGAAGATCTATTAGGTTATAAATGTAAAGTTTTAATATAT
TATTAATTTATTTTAAAGTAATTTTGTTAGTAATTTTTGTGATTAGGTT
Found at i:75065519 original size:16 final size:17
Alignment explanation
Indices: 75065498--75065537 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
75065488 TACAATGTTG
* *
75065498 ATTTTTT-TTTCATTAA
1 ATTTTTTATTTAAGTAA
75065514 ATTTTTTATTTAAGTAA
1 ATTTTTTATTTAAGTAA
75065531 ATTTTTT
1 ATTTTTT
75065538 GCTGTTCGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTTTTATTTAAGTAA
Found at i:75074555 original size:36 final size:35
Alignment explanation
Indices: 75074515--75074626 Score: 118
Period size: 36 Copynumber: 3.1 Consensus size: 35
75074505 TAAATAAAAG
* *
75074515 TACTGAATGACTGACTGTTATTGAATAATTGATCGT
1 TACTGAATAACTGATTGTTATTGAATAATTGAT-GT
** *
75074551 TACTGAATAACTGATTGCTT-TTGAGCAAATGATTGT
1 TACTGAATAACTGATTG-TTATTGAATAATTGA-TGT
* *
75074587 TACTGAATAACTAATTGCTATTGAATAATTGAATGT
1 TACTGAATAACTGATTGTTATTGAATAATTG-ATGT
75074623 TACT
1 TACT
75074627 AAATGAAACT
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
35 1 0.02
36 57 0.92
37 4 0.06
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (35 bp):
TACTGAATAACTGATTGTTATTGAATAATTGATGT
Found at i:75074603 original size:18 final size:18
Alignment explanation
Indices: 75074515--75074626 Score: 82
Period size: 18 Copynumber: 6.2 Consensus size: 18
75074505 TAAATAAAAG
* *
75074515 TACTGAATGACTGACTGT
1 TACTGAATAACTGATTGT
* * *
75074533 TATTGAATAATTGATCGT
1 TACTGAATAACTGATTGT
75074551 TACTGAATAACTGATTGCT
1 TACTGAATAACTGATTG-T
* ** *
75074570 T-TTGAGCAAATGATTGT
1 TACTGAATAACTGATTGT
* *
75074587 TACTGAATAACTAATTGC
1 TACTGAATAACTGATTGT
* * *
75074605 TATTGAATAATTGAATGT
1 TACTGAATAACTGATTGT
75074623 TACT
1 TACT
75074627 AAATGAAACT
Statistics
Matches: 68, Mismatches: 24, Indels: 4
0.71 0.25 0.04
Matches are distributed among these distances:
17 2 0.03
18 64 0.94
19 2 0.03
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (18 bp):
TACTGAATAACTGATTGT
Found at i:75076499 original size:22 final size:22
Alignment explanation
Indices: 75076471--75076514 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
75076461 TCATGGAAGA
75076471 ATTGGAAAAAGATATATTTTAT
1 ATTGGAAAAAGATATATTTTAT
75076493 ATTGGAAAAAGATATATTTTAT
1 ATTGGAAAAAGATATATTTTAT
75076515 CTCCTAGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (22 bp):
ATTGGAAAAAGATATATTTTAT
Found at i:75077355 original size:33 final size:33
Alignment explanation
Indices: 75077313--75077376 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
75077303 GATGAACTTG
*
75077313 AGCTGGGAGGAGTGGAGTACTGCGATGGATATA
1 AGCTGGGAGGAGTGGAGTACTGCAATGGATATA
75077346 AGCTGGGAGGAGTGGAGTACTGCAATGGATA
1 AGCTGGGAGGAGTGGAGTACTGCAATGGATA
75077377 CGTGCCGGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.28, C:0.09, G:0.42, T:0.20
Consensus pattern (33 bp):
AGCTGGGAGGAGTGGAGTACTGCAATGGATATA
Found at i:75077392 original size:33 final size:33
Alignment explanation
Indices: 75077317--75077399 Score: 103
Period size: 33 Copynumber: 2.5 Consensus size: 33
75077307 AACTTGAGCT
* * *
75077317 GGGAGGAGTGGAGTACTGCGATGGATATAAGCT
1 GGGAGGAGTGGAGTACTGCAATGGATACAAGCC
**
75077350 GGGAGGAGTGGAGTACTGCAATGGATACGTGCC
1 GGGAGGAGTGGAGTACTGCAATGGATACAAGCC
* *
75077383 GGGAAGAGTGAAGTACT
1 GGGAGGAGTGGAGTACT
75077400 ATAGTGGATA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.28, C:0.11, G:0.42, T:0.19
Consensus pattern (33 bp):
GGGAGGAGTGGAGTACTGCAATGGATACAAGCC
Found at i:75080550 original size:43 final size:43
Alignment explanation
Indices: 75080500--75080650 Score: 171
Period size: 43 Copynumber: 3.5 Consensus size: 43
75080490 TATCCCAGAT
* * *
75080500 ATGGTCTTACATGTTATCACATATCGATGCCACTGTCCTAAAC
1 ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCTAGAC
* * ** *
75080543 AGGGTCTTACATGAAATCGTATAACGATGCCAATGTCCTAGAC
1 ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCTAGAC
** *
75080586 ATGGTCTTACACATAATCACA-ATACAATGCCAATGT-CTCAGAC
1 ATGGTCTTACATGTAATCACATAT-CGATGCCAATGTCCT-AGAC
75080629 ATGGTCTTACATGTAATCACAT
1 ATGGTCTTACATGTAATCACAT
75080651 CTTGGAAATC
Statistics
Matches: 87, Mismatches: 18, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
42 3 0.03
43 84 0.97
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCTAGAC
Found at i:75081207 original size:19 final size:18
Alignment explanation
Indices: 75081183--75081229 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
75081173 CACATAATTT
75081183 CAAAATTCACAATTTAGT-C
1 CAAAATTCAC-ATTT-GTAC
* *
75081202 CAAAATTGACATTTTTAC
1 CAAAATTCACATTTGTAC
75081220 CAAAATTCAC
1 CAAAATTCAC
75081230 TTTACAAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 1 0.04
18 14 0.58
19 9 0.38
ACGTcount: A:0.43, C:0.21, G:0.04, T:0.32
Consensus pattern (18 bp):
CAAAATTCACATTTGTAC
Found at i:75083133 original size:23 final size:24
Alignment explanation
Indices: 75083098--75083142 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
75083088 TTCCCATTCT
75083098 CTTTTCCTTTCCT-TTCTTCTTTC
1 CTTTTCCTTTCCTATTCTTCTTTC
*
75083121 CTTTT-CTTCTCCTATTTTTCTT
1 CTTTTCCTT-TCCTATTCTTCTT
75083143 CTTCTCATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 3 0.16
23 9 0.47
24 7 0.37
ACGTcount: A:0.02, C:0.31, G:0.00, T:0.67
Consensus pattern (24 bp):
CTTTTCCTTTCCTATTCTTCTTTC
Found at i:75084942 original size:29 final size:29
Alignment explanation
Indices: 75084859--75084942 Score: 82
Period size: 29 Copynumber: 2.9 Consensus size: 29
75084849 GAGGGTTTGA
* *
75084859 AAAAAATAA-TTTGTACAAGATGGGTTCTG
1 AAAAAATAATTTTG-ACGAGATGGATTCTG
* * * *
75084888 AAAAAATAGTTTTGAGGGGATAGATTCT-
1 AAAAAATAATTTTGACGAGATGGATTCTG
75084916 AACAAAATAATTTTGACGAGATGGATT
1 AA-AAAATAATTTTGACGAGATGGATT
75084943 GAGTTTTGTA
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
28 2 0.05
29 37 0.86
30 4 0.09
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.31
Consensus pattern (29 bp):
AAAAAATAATTTTGACGAGATGGATTCTG
Found at i:75089923 original size:28 final size:28
Alignment explanation
Indices: 75089849--75089923 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
75089839 TCAAATATGG
* *
75089849 CACTTAGTGTGCAAAATATTGAGAACGG
1 CACTTAGTGTGCGAAATATTGAGAACGA
* *
75089877 CACTTAGTGTGCGAGATATTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAACGA
* *
75089905 CATTTAGTGTGTGAAATAT
1 CACTTAGTGTGCGAAATAT
75089924 CGAATGGTTC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (28 bp):
CACTTAGTGTGCGAAATATTGAGAACGA
Found at i:75096649 original size:28 final size:28
Alignment explanation
Indices: 75096618--75096698 Score: 117
Period size: 28 Copynumber: 2.9 Consensus size: 28
75096608 CATCAAATAT
*
75096618 GGCACTTAGTGTGCGAAATATTGAGAAC
1 GGCACTTAGTGTGCGAAATATTGAAAAC
* * *
75096646 GGCATTTAGTGTGCGAGATATTGAAAAT
1 GGCACTTAGTGTGCGAAATATTGAAAAC
*
75096674 GGCACTTAGTGTGTGAAATATTGAA
1 GGCACTTAGTGTGCGAAATATTGAA
75096699 TGGTTCAGCG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.32, C:0.10, G:0.28, T:0.30
Consensus pattern (28 bp):
GGCACTTAGTGTGCGAAATATTGAAAAC
Found at i:75096677 original size:56 final size:56
Alignment explanation
Indices: 75096591--75096697 Score: 162
Period size: 56 Copynumber: 1.9 Consensus size: 56
75096581 GCTATATCTA
75096591 GCATTTAGTGTGCAAGACATCAAATATGGCACTTAGTGTGCGAAATATTGAGAACG
1 GCATTTAGTGTGCAAGACATCAAATATGGCACTTAGTGTGCGAAATATTGAGAACG
* * * *
75096647 GCATTTAGTGTGCGAGATATTGAAA-ATGGCACTTAGTGTGTGAAATATTGA
1 GCATTTAGTGTGCAAGACA-TCAAATATGGCACTTAGTGTGCGAAATATTGA
75096698 ATGGTTCAGC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
56 42 0.91
57 4 0.09
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (56 bp):
GCATTTAGTGTGCAAGACATCAAATATGGCACTTAGTGTGCGAAATATTGAGAACG
Found at i:75096961 original size:37 final size:37
Alignment explanation
Indices: 75096911--75096984 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
75096901 ATGTTATGTG
75096911 AGATATGAACTATAGTTGCTTTAACTAAATATACATA
1 AGATATGAACTATAGTTGCTTTAACTAAATATACATA
75096948 AGATATGAACTATAGTTGCTTTAACTAAATATACATA
1 AGATATGAACTATAGTTGCTTTAACTAAATATACATA
75096985 TGGCAATTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (37 bp):
AGATATGAACTATAGTTGCTTTAACTAAATATACATA
Found at i:75102741 original size:35 final size:33
Alignment explanation
Indices: 75102664--75102743 Score: 88
Period size: 35 Copynumber: 2.3 Consensus size: 33
75102654 GGCATTACGG
*
75102664 AGTGGCATCATGGCAATAGTCTACTGGCTCTAT
1 AGTGGCATCATGGCAATAGTCTACTAGCTCTAT
* * *
75102697 AGATCGGCATCATGGTAATGGTTTACTAGCTCTAT
1 AG-T-GGCATCATGGCAATAGTCTACTAGCTCTAT
75102732 GAAGTGGCATCA
1 --AGTGGCATCA
75102744 CGAAGATGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
33 2 0.05
34 1 0.03
35 33 0.85
36 1 0.03
37 2 0.05
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (33 bp):
AGTGGCATCATGGCAATAGTCTACTAGCTCTAT
Found at i:75103270 original size:28 final size:28
Alignment explanation
Indices: 75103226--75103302 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
75103216 AGAGAAAGAG
75103226 ATGTCCACCAA-AGACTATCTTATGCGGGA
1 ATGTCCACCAAGA-ACTATCTTATG-GGGA
* *
75103255 A-GTCCTCCAAGAACTATCTTATGTGGA
1 ATGTCCACCAAGAACTATCTTATGGGGA
*
75103282 ATGTCCACCAAGGACTATCTT
1 ATGTCCACCAAGAACTATCTT
75103303 GAAGACGAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
27 4 0.10
28 36 0.86
29 2 0.05
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (28 bp):
ATGTCCACCAAGAACTATCTTATGGGGA
Found at i:75112016 original size:165 final size:165
Alignment explanation
Indices: 75111744--75112074 Score: 644
Period size: 165 Copynumber: 2.0 Consensus size: 165
75111734 TCAGCATATC
75111744 TTTTCGCTGAAAGCTGCTAGTTGAAACAATACTTTGTCCTTCAATGGACCCCTCTGTTGGTTAAG
1 TTTTCGCTGAAAGCTGCTAGTTGAAACAATACTTTGTCCTTCAATGGACCCCTCTGTTGGTTAAG
*
75111809 CATTCTAGTTTTTCTGTCGTATTGGTGTATCATTTCCTATGGGAATTAAACTGATGAAGTGATCT
66 CATTCTAGTTTTTCTGTCGTATTGGTGTATCATTTCCTATGGGAATTAAACTGATGAAGCGATCT
*
75111874 CGAATGATCATCTGAAGTGAGACTTGGCTTCTGAA
131 CAAATGATCATCTGAAGTGAGACTTGGCTTCTGAA
75111909 TTTTCGCTGAAAGCTGCTAGTTGAAACAATACTTTGTCCTTCAATGGACCCCTCTGTTGGTTAAG
1 TTTTCGCTGAAAGCTGCTAGTTGAAACAATACTTTGTCCTTCAATGGACCCCTCTGTTGGTTAAG
75111974 CATTCTAGTTTTTCTGTCGTATTGGTGTATCATTTCCTATGGGAATTAAACTGATGAAGCGATCT
66 CATTCTAGTTTTTCTGTCGTATTGGTGTATCATTTCCTATGGGAATTAAACTGATGAAGCGATCT
75112039 CAAATGATCATCTGAAGTGAGACTTGGCTTCTGAA
131 CAAATGATCATCTGAAGTGAGACTTGGCTTCTGAA
75112074 T
1 T
75112075 ATTTTACGTC
Statistics
Matches: 164, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
165 164 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (165 bp):
TTTTCGCTGAAAGCTGCTAGTTGAAACAATACTTTGTCCTTCAATGGACCCCTCTGTTGGTTAAG
CATTCTAGTTTTTCTGTCGTATTGGTGTATCATTTCCTATGGGAATTAAACTGATGAAGCGATCT
CAAATGATCATCTGAAGTGAGACTTGGCTTCTGAA
Found at i:75124161 original size:22 final size:23
Alignment explanation
Indices: 75124119--75124161 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
75124109 TTTATTTTAT
*
75124119 TTTATTTTAATATAATTATTGGG
1 TTTATTTTAATATAATAATTGGG
*
75124142 TTTATTTT-ATTTAATAATTG
1 TTTATTTTAATATAATAATTG
75124162 AATGATGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.60
Consensus pattern (23 bp):
TTTATTTTAATATAATAATTGGG
Found at i:75132106 original size:29 final size:29
Alignment explanation
Indices: 75132043--75132108 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
75132033 TTATACTCTT
*
75132043 TTAA-TAA-TTTTTAATTTTTTAAAATAA
1 TTAATTAATTTTTTAAATTTTTAAAATAA
* *
75132070 ATATTTAATTTTTTAAAATTTTTAAAA-AA
1 TTAATTAATTTTTT-AAATTTTTAAAATAA
75132099 TTAATTAATT
1 TTAATTAATT
75132109 GTGACATGAC
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
27 2 0.06
28 3 0.10
29 15 0.48
30 11 0.35
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (29 bp):
TTAATTAATTTTTTAAATTTTTAAAATAA
Found at i:75139063 original size:8 final size:8
Alignment explanation
Indices: 75139050--75139079 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
75139040 ATATAATATA
75139050 AAAAATTC
1 AAAAATTC
75139058 AAAAATTC
1 AAAAATTC
75139066 AAAAATTC
1 AAAAATTC
75139074 AAAAAT
1 AAAAAT
75139080 GAGATACCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAAATTC
Found at i:75149444 original size:21 final size:20
Alignment explanation
Indices: 75149416--75149455 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
75149406 AAAAAGATAA
75149416 AATCAAGTT-TATAAGACTTG
1 AATCAAGTTCT-TAAGACTTG
75149436 AATCTAAGTTCTTAAGACTT
1 AATC-AAGTTCTTAAGACTT
75149456 CCTATTAGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 13 0.72
22 1 0.06
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (20 bp):
AATCAAGTTCTTAAGACTTG
Found at i:75150668 original size:29 final size:28
Alignment explanation
Indices: 75150619--75150700 Score: 85
Period size: 29 Copynumber: 2.9 Consensus size: 28
75150609 TTAAAAATAT
* * **
75150619 AAAAAAACTAAAACTAATTAAAATTCCCA
1 AAAAAAACTAAAAAT-TTTAAAAAACCCA
75150648 AAAAATAA-TAAAAAATTTTAAAAAACCCA
1 AAAAA-AACT-AAAAATTTTAAAAAACCCA
*
75150677 AAAAAAACTTAAAATTTTAAAAAA
1 AAAAAAACTAAAAATTTTAAAAAA
75150701 AAACTAATCT
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
28 16 0.36
29 22 0.49
30 7 0.16
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (28 bp):
AAAAAAACTAAAAATTTTAAAAAACCCA
Found at i:75152604 original size:13 final size:13
Alignment explanation
Indices: 75152574--75152612 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
75152564 TTTACTCTTG
* *
75152574 ATTTTACAAAAAG
1 ATTTTACTAAAAT
*
75152587 GTTTTACTAAAAT
1 ATTTTACTAAAAT
75152600 ATTTTACTAAAAT
1 ATTTTACTAAAAT
75152613 TATGATTTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (13 bp):
ATTTTACTAAAAT
Found at i:75154719 original size:90 final size:90
Alignment explanation
Indices: 75154559--75154831 Score: 282
Period size: 90 Copynumber: 3.0 Consensus size: 90
75154549 AATTAATAAT
** * * * **
75154559 CTGCAAC-TCTGGTGGTTCATCCACAAATTATCTGGTAGCTTTTATATGCAAAAATGTTGTGCAT
1 CTGCAACAT-TGGTGGTTCATCCACCCATTTTTTGGCAGCTTTTATATGCAATTATGTTGTGCAT
** *
75154623 TTACAACCATCTGGTAGCGTATTGAC
65 CCACAACCATCTGGCAGCGTATTGAC
* *
75154649 CTGCAACATTGGTGGTTCATCCACCCATTTTTTGGCAGCTTTTATTTGCAATTATGTTGTGTATC
1 CTGCAACATTGGTGGTTCATCCACCCATTTTTTGGCAGCTTTTATATGCAATTATGTTGTGCATC
* * *
75154714 CACAACCATCTGGCAACATATTAAC
66 CACAACCATCTGGCAGCGTATTGAC
* * ** * * *
75154739 TTGCAACAATGGTGGTTCATCCACCCACATTTTGGTC-GCTCTCATCTGCAATTATGTTGTGCA-
1 CTGCAACATTGGTGGTTCATCCACCCATTTTTTGG-CAGCTTTTATATGCAATTATGTTGTGCAT
* *
75154802 CTCACAACCATTTGCCAGCGTATTGAC
65 C-CACAACCATCTGGCAGCGTATTGAC
75154829 CTG
1 CTG
75154832 TAACTTTTGT
Statistics
Matches: 151, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
89 1 0.01
90 148 0.98
91 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (90 bp):
CTGCAACATTGGTGGTTCATCCACCCATTTTTTGGCAGCTTTTATATGCAATTATGTTGTGCATC
CACAACCATCTGGCAGCGTATTGAC
Found at i:75155582 original size:21 final size:23
Alignment explanation
Indices: 75155538--75155582 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
75155528 CATGAGTTGT
* *
75155538 TTTTTTTCTAAAATTAGAATAAA
1 TTTTCTTCTAAAATTAGAACAAA
75155561 TTTTCTTCTAAAA-TA-AACAAA
1 TTTTCTTCTAAAATTAGAACAAA
75155582 T
1 T
75155583 GTTTTAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 2 0.10
23 12 0.60
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.44
Consensus pattern (23 bp):
TTTTCTTCTAAAATTAGAACAAA
Found at i:75156098 original size:15 final size:15
Alignment explanation
Indices: 75156076--75156113 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
75156066 GTATATATTA
*
75156076 TTATATTAATTAATAT
1 TTATATTAA-AAATAT
75156092 TTA-ATTAAAAATAT
1 TTATATTAAAAATAT
75156106 TTATATTA
1 TTATATTA
75156114 TTATCACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 8 0.40
15 9 0.45
16 3 0.15
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TTATATTAAAAATAT
Found at i:75156355 original size:21 final size:20
Alignment explanation
Indices: 75156304--75156355 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
75156294 AAATCCAAAT
*
75156304 TAAAATACTAAAATTCAGGA
1 TAAAATACTGAAATTCAGGA
*
75156324 TAAAATCCTGAAATTCAGGA
1 TAAAATACTGAAATTCAGGA
75156344 TAAAAATACTGA
1 T-AAAATACTGA
75156356 TGTGGCATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 19 0.68
21 9 0.32
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.25
Consensus pattern (20 bp):
TAAAATACTGAAATTCAGGA
Found at i:75164597 original size:24 final size:26
Alignment explanation
Indices: 75164568--75164621 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 26
75164558 TAAGCATTAT
* *
75164568 ATAAAAAGT-TAAAATAGAT-AAT-A
1 ATAAAAAATGTAAAATAAATAAATAA
75164591 ATAAAAAATGTAAAATAAATAAATAA
1 ATAAAAAATGTAAAATAAATAAATAA
75164617 ATAAA
1 ATAAA
75164622 TAGAATGTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 8 0.31
24 9 0.35
25 3 0.12
26 6 0.23
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (26 bp):
ATAAAAAATGTAAAATAAATAAATAA
Found at i:75164729 original size:23 final size:25
Alignment explanation
Indices: 75164671--75164759 Score: 82
Period size: 29 Copynumber: 3.6 Consensus size: 25
75164661 AAATAGTAAT
*
75164671 GAAA-ATAATATTAGTATATAAATA
1 GAAATATAATAATAGTATATAAATA
75164695 GAAATA-AA-AATA-TA-ATAAATA
1 GAAATATAATAATAGTATATAAATA
75164716 GAAATATAATAATAGTAGAAATATAAATA
1 GAAATATAATAATAGT----ATATAAATA
75164745 GATAA-ATAATAATAG
1 GA-AATATAATAATAG
75164760 CATTAGAATA
Statistics
Matches: 54, Mismatches: 1, Indels: 15
0.77 0.01 0.21
Matches are distributed among these distances:
21 13 0.24
22 4 0.07
23 7 0.13
24 7 0.13
25 1 0.02
28 1 0.02
29 19 0.35
30 2 0.04
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (25 bp):
GAAATATAATAATAGTATATAAATA
Found at i:75164736 original size:17 final size:15
Alignment explanation
Indices: 75164696--75164741 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
75164686 ATATAAATAG
*
75164696 AAATAAAAATATAAT
1 AAATAGAAATATAAT
75164711 AAATAGAAATATAAT
1 AAATAGAAATATAAT
75164726 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
75164742 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:75164756 original size:15 final size:14
Alignment explanation
Indices: 75164696--75164756 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 14
75164686 ATATAAATAG
*
75164696 AAATAAAAATATAAT
1 AAATAGAAA-ATAAT
75164711 AAATAGAAATATAAT
1 AAATAGAAA-ATAAT
75164726 -AATAGTAGAAAT-AT
1 AAATAG-A-AAATAAT
75164740 AAATAGATAAATAAT
1 AAATAGA-AAATAAT
75164755 AA
1 AA
75164757 TAGCATTAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
14 12 0.30
15 26 0.65
16 2 0.05
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (14 bp):
AAATAGAAAATAAT
Found at i:75165342 original size:11 final size:11
Alignment explanation
Indices: 75165320--75165352 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
75165310 ATTTAATAAT
75165320 AAAATCAAATC
1 AAAATCAAATC
75165331 -AAATCAAAATC
1 AAAATC-AAATC
75165342 AAAATCAAATC
1 AAAATCAAATC
75165353 TTTCTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 5 0.25
11 10 0.50
12 5 0.25
ACGTcount: A:0.64, C:0.18, G:0.00, T:0.18
Consensus pattern (11 bp):
AAAATCAAATC
Found at i:75170271 original size:30 final size:29
Alignment explanation
Indices: 75170235--75170295 Score: 113
Period size: 30 Copynumber: 2.1 Consensus size: 29
75170225 GAAAGGAAGT
75170235 TTTAGCACTAAGTGTGCGATTTAAACTAGC
1 TTTAGCACTAAGTGTGCGATTT-AACTAGC
75170265 TTTAGCACTAAGTGTGCGATTTAACTAGC
1 TTTAGCACTAAGTGTGCGATTTAACTAGC
75170294 TT
1 TT
75170296 CGGCTACTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.29
30 22 0.71
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (29 bp):
TTTAGCACTAAGTGTGCGATTTAACTAGC
Found at i:75192628 original size:22 final size:22
Alignment explanation
Indices: 75192603--75192650 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
75192593 TTTTTTGTTG
*
75192603 TTTT-CTACCTATTTTGCTACCA
1 TTTTACTA-CTATGTTGCTACCA
* *
75192625 TTTTACTATTATGTTGCTACTA
1 TTTTACTACTATGTTGCTACCA
75192647 TTTT
1 TTTT
75192651 GTTGTTATTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 19 0.86
23 3 0.14
ACGTcount: A:0.19, C:0.19, G:0.06, T:0.56
Consensus pattern (22 bp):
TTTTACTACTATGTTGCTACCA
Found at i:75192722 original size:30 final size:30
Alignment explanation
Indices: 75192688--75192750 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
75192678 ACTTATTTTA
*
75192688 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTAGTTTAAAGACAT
*
75192718 TTGTTAATTTTGTTATTAGTTTAGAGACAT
1 TTGTTAATTTTGTTATTAGTTTAAAGACAT
75192748 TTG
1 TTG
75192751 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.03, G:0.14, T:0.56
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTAGTTTAAAGACAT
Found at i:75192854 original size:18 final size:18
Alignment explanation
Indices: 75192833--75192872 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
75192823 GAAATATTTA
*
75192833 TTTTGATGT-TTTTAGTAT
1 TTTTGATGTATTATA-TAT
75192851 TTTTGATGTATTATATAT
1 TTTTGATGTATTATATAT
75192869 TTTT
1 TTTT
75192873 TAAAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (18 bp):
TTTTGATGTATTATATAT
Found at i:75192904 original size:12 final size:12
Alignment explanation
Indices: 75192874--75192906 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
75192864 TATATTTTTT
75192874 AAAATT-ATATA
1 AAAATTAATATA
75192885 AAAA-TAATATA
1 AAAATTAATATA
75192896 AAAATTAATAT
1 AAAATTAATAT
75192907 GGGTGGGCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:75199560 original size:15 final size:15
Alignment explanation
Indices: 75199523--75199564 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
75199513 TTAGACTTTT
75199523 TTAAAATTTATAAAAA
1 TTAAAA-TTATAAAAA
*
75199539 TTTAAATTAGTAAAAA
1 TTAAAATTA-TAAAAA
75199555 -TAAAATTATA
1 TTAAAATTATA
75199565 CTTTAGCCCC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 2 0.09
15 10 0.43
16 11 0.48
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (15 bp):
TTAAAATTATAAAAA
Found at i:75201218 original size:16 final size:15
Alignment explanation
Indices: 75201199--75201248 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 15
75201189 TACTTATATT
75201199 GATTGATAATTATAAA
1 GATT-ATAATTATAAA
*
75201215 GATTAT-ATGATAAA
1 GATTATAATTATAAA
*
75201229 -A-AATAATTATAAA
1 GATTATAATTATAAA
75201242 GATTATA
1 GATTATA
75201249 TATCCAAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 7
0.71 0.11 0.18
Matches are distributed among these distances:
12 2 0.07
13 8 0.30
14 8 0.30
15 5 0.19
16 4 0.15
ACGTcount: A:0.54, C:0.00, G:0.10, T:0.36
Consensus pattern (15 bp):
GATTATAATTATAAA
Found at i:75201731 original size:15 final size:15
Alignment explanation
Indices: 75201710--75201750 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
75201700 TTTTTTCTAA
75201710 TTTGATTTCTAATTTG
1 TTTGATTT-TAATTTG
75201726 -TTGA--TTAATTTG
1 TTTGATTTTAATTTG
75201738 TTTGATTTTAATT
1 TTTGATTTTAATT
75201751 ATTATTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 7
0.76 0.00 0.24
Matches are distributed among these distances:
12 7 0.32
13 5 0.23
15 10 0.45
ACGTcount: A:0.22, C:0.02, G:0.12, T:0.63
Consensus pattern (15 bp):
TTTGATTTTAATTTG
Found at i:75204405 original size:13 final size:13
Alignment explanation
Indices: 75204387--75204414 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
75204377 CCAAAATAAT
75204387 ATATAAATTTTAC
1 ATATAAATTTTAC
75204400 ATATAAATTTTAC
1 ATATAAATTTTAC
75204413 AT
1 AT
75204415 TCATAAGTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.46
Consensus pattern (13 bp):
ATATAAATTTTAC
Found at i:75205893 original size:14 final size:14
Alignment explanation
Indices: 75205874--75205900 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
75205864 AGATTTAAAA
75205874 ATTAAAAATAAATT
1 ATTAAAAATAAATT
75205888 ATTAAAAATAAAT
1 ATTAAAAATAAAT
75205901 ATAACACATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
ATTAAAAATAAATT
Found at i:75209209 original size:46 final size:46
Alignment explanation
Indices: 75209156--75209374 Score: 246
Period size: 46 Copynumber: 4.7 Consensus size: 46
75209146 ATTGTTGGTT
*
75209156 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-GATGAGAGCC
* *
75209202 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGAGATGAGAGCC
* * *
75209250 AGTGTAAGACATGTCTGAGACATGCATCGGCCTCGAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATG-AGAGCC
* * * * *
75209296 AGTTTAAGACATGTCTGGGACATACATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGCC
*
75209342 AGTGTAAGACCATGTCTCGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
75209375 ATCGGCATCT
Statistics
Matches: 146, Mismatches: 18, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
45 1 0.01
46 69 0.47
47 44 0.30
48 31 0.21
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGCC
Found at i:75209371 original size:94 final size:93
Alignment explanation
Indices: 75209155--75209374 Score: 254
Period size: 94 Copynumber: 2.3 Consensus size: 93
75209145 TATTGTTGGT
* *
75209155 TAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTG
1 TAGTGTAAGACATGTCT-GGACATGCATCGGCCACATGACGAGAGCCAGTGTAAGACCATGTCTG
* *
75209220 GGACATGGCATCGGCATTGAGATGAGAGC
65 GGACATGACATCGGCATCGAGATGAGAGC
* *
75209249 TAGTGTAAGACATGTCTGAGACATGCATCGGCCTCGA-GACGTA-AGCCAGTTTAAGA-CATGTC
1 TAGTGTAAGACATGTCTG-GACATGCATCGGCCAC-ATGACG-AGAGCCAGTGTAAGACCATGTC
*
75209311 TGGGACAT-ACATCGGC-TACGAGATGATAG-
63 TGGGACATGACATCGGCAT-CGAGATGAGAGC
75209340 TCAGTGTAAGACCATGTCTCGGACATGGCATCGGC
1 T-AGTGTAAGA-CATGTCT-GGACAT-GCATCGGC
75209375 ATCGGCATCT
Statistics
Matches: 111, Mismatches: 7, Indels: 16
0.83 0.05 0.12
Matches are distributed among these distances:
91 2 0.02
92 25 0.23
93 27 0.24
94 55 0.50
95 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (93 bp):
TAGTGTAAGACATGTCTGGACATGCATCGGCCACATGACGAGAGCCAGTGTAAGACCATGTCTGG
GACATGACATCGGCATCGAGATGAGAGC
Found at i:75219249 original size:7 final size:7
Alignment explanation
Indices: 75219237--75219285 Score: 64
Period size: 7 Copynumber: 7.0 Consensus size: 7
75219227 ACCAAATGGT
75219237 CCCTAAA
1 CCCTAAA
75219244 CCCTAAA
1 CCCTAAA
*
75219251 CTCTTAAA
1 C-CCTAAA
75219259 -CCTAAA
1 CCCTAAA
*
75219265 CTCTAAA
1 CCCTAAA
75219272 CCCTAAA
1 CCCTAAA
75219279 CCCTAAA
1 CCCTAAA
75219286 AAAGAGTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
6 5 0.14
7 26 0.72
8 5 0.14
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (7 bp):
CCCTAAA
Found at i:75221966 original size:21 final size:21
Alignment explanation
Indices: 75221952--75222002 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
75221942 AAATTTCATA
75221952 ATTTTAACATGAAATTTTACT
1 ATTTTAACATGAAATTTTACT
75221973 ATTTTAACATGAAATTTTACT
1 ATTTTAACATGAAATTTTACT
75221994 ATTTTAACA
1 ATTTTAACA
75222003 AATAAATCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (21 bp):
ATTTTAACATGAAATTTTACT
Found at i:75226013 original size:23 final size:23
Alignment explanation
Indices: 75225987--75226038 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
75225977 AAAACCTTAA
*
75225987 TTCTCTCTTTTTCTTTTCTTT-CT
1 TTCTCTCTTTTTC-CTTCTTTCCT
*
75226010 TTCTTTCTTTTTCCTTCTTTCCT
1 TTCTCTCTTTTTCCTTCTTTCCT
75226033 TTCTCT
1 TTCTCT
75226039 GTTTCGTTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 6 0.24
23 19 0.76
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (23 bp):
TTCTCTCTTTTTCCTTCTTTCCT
Found at i:75226268 original size:20 final size:22
Alignment explanation
Indices: 75226233--75226272 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
75226223 TTTATTTTAC
75226233 ATAATATAATATAATATATTTT
1 ATAATATAATATAATATATTTT
75226255 ATAAT-TAA-ATAATATATT
1 ATAATATAATATAATATATT
75226273 AATATATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
21 3 0.17
22 5 0.28
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAATATAATATAATATATTTT
Found at i:75226291 original size:28 final size:30
Alignment explanation
Indices: 75226233--75226291 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 30
75226223 TTTATTTTAC
* *
75226233 ATAATATAATATAATATATTTTATAATTAA
1 ATAATATAATATAATATATTTTAAAAATAA
75226263 ATAATAT-AT-TAATATA-TTTAAAACATAA
1 ATAATATAATATAATATATTTTAAAA-ATAA
75226291 A
1 A
75226292 AATCTAAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
27 6 0.23
28 11 0.42
29 2 0.08
30 7 0.27
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (30 bp):
ATAATATAATATAATATATTTTAAAAATAA
Found at i:75232424 original size:27 final size:26
Alignment explanation
Indices: 75232376--75232507 Score: 158
Period size: 27 Copynumber: 4.9 Consensus size: 26
75232366 GCGAGACTGC
* *
75232376 CAGATATTGTGAC-GAAGTCACCAGAT
1 CAGATATTGTGGCAG-AGCCACCAGAT
75232402 ACAGATATTGTGGCAGAGCCACCAGAT
1 -CAGATATTGTGGCAGAGCCACCAGAT
* * *
75232429 CAGATAATCGTGGCATAGCCACCAGAA
1 CAGAT-ATTGTGGCAGAGCCACCAGAT
75232456 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
*
75232483 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
75232508 GACGCTTCCT
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
26 7 0.08
27 82 0.89
28 3 0.03
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAT
Found at i:75232470 original size:54 final size:54
Alignment explanation
Indices: 75232394--75232507 Score: 203
Period size: 54 Copynumber: 2.1 Consensus size: 54
75232384 GTGACGAAGT
75232394 CACCAGATACAGATATTGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGC
1 CACCAGATACAGATATTGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGC
*
75232448 CACCAGA-ACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGC
1 CACCAGATACAGATAT-TGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGC
75232502 CACCAG
1 CACCAG
75232508 GACGCTTCCT
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
53 8 0.14
54 50 0.86
ACGTcount: A:0.34, C:0.25, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATACAGATATTGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGC
Found at i:75234127 original size:26 final size:26
Alignment explanation
Indices: 75234096--75234203 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
75234086 TGAAATGCCC
*
75234096 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
75234122 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
75234148 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
75234174 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
75234200 ATCA
1 ATCA
75234204 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:75239520 original size:27 final size:27
Alignment explanation
Indices: 75239472--75239630 Score: 193
Period size: 27 Copynumber: 5.9 Consensus size: 27
75239462 GCGAGGCTGC
* *
75239472 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
75239499 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
75239525 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
75239552 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
75239579 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
75239606 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
75239631 GACACTTCCT
Statistics
Matches: 117, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
26 10 0.09
27 102 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:75239565 original size:54 final size:54
Alignment explanation
Indices: 75239490--75239630 Score: 248
Period size: 54 Copynumber: 2.6 Consensus size: 54
75239480 GTGACGAAGT
*
75239490 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
75239544 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
75239598 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
75239631 GACACTTCCT
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 78 0.94
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:75241250 original size:26 final size:26
Alignment explanation
Indices: 75241219--75241326 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
75241209 TGAAATGCCC
*
75241219 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
75241245 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
75241271 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
75241297 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
75241323 ATCA
1 ATCA
75241327 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:75246667 original size:27 final size:27
Alignment explanation
Indices: 75246625--75246757 Score: 182
Period size: 27 Copynumber: 5.0 Consensus size: 27
75246615 GTCACTAGAT
75246625 ACAGATAT-TGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
75246651 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* *
75246678 TCAGATA-ATCGTGGCATAGCCACCAGA
1 ACAGATATAT-GTGGCAGAGCCACCAGA
*
75246705 ACAAATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* *
75246732 TCAGATA-ATTGTGGCATAGCCACCAG
1 ACAGATATA-TGTGGCAGAGCCACCAG
75246758 GACGCTTCCT
Statistics
Matches: 95, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
26 11 0.12
27 82 0.86
28 2 0.02
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.17
Consensus pattern (27 bp):
ACAGATATATGTGGCAGAGCCACCAGA
Found at i:75246701 original size:54 final size:54
Alignment explanation
Indices: 75246621--75246757 Score: 231
Period size: 54 Copynumber: 2.5 Consensus size: 54
75246611 CGAAGTCACT
* *
75246621 AGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACC
1 AGAT-CAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGCCACC
*
75246675 AGATCAGATAATCGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGCCACC
75246729 AGATCAGATAATTGTGGCATAGCCACCAG
1 AGATCAGATAATTGTGGCATAGCCACCAG
75246758 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 73 0.94
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
AGATCAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGCCACC
Found at i:75248402 original size:26 final size:26
Alignment explanation
Indices: 75248371--75248478 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
75248361 TGAAATGCCC
* *
75248371 ATCATGGAATATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
75248397 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
75248423 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
75248449 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
75248475 ATCA
1 ATCA
75248479 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:75248428 original size:52 final size:52
Alignment explanation
Indices: 75248371--75248478 Score: 207
Period size: 52 Copynumber: 2.1 Consensus size: 52
75248361 TGAAATGCCC
75248371 ATCATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
*
75248423 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
75248475 ATCA
1 ATCA
75248479 ATTTGTACCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 55 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (52 bp):
ATCATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:75263002 original size:3 final size:3
Alignment explanation
Indices: 75262994--75263036 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
75262984 TCATGTTACA
75262994 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
75263037 CTATTATTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:75264848 original size:10 final size:10
Alignment explanation
Indices: 75264833--75264883 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
75264823 AAATTTTAGG
75264833 ATTTATTTTT
1 ATTTATTTTT
*
75264843 ATTTATCTTT
1 ATTTATTTTT
*
75264853 ATTTATCTTT
1 ATTTATTTTT
* *
75264863 AATTATTTGT
1 ATTTATTTTT
75264873 ATTTATCTTTT
1 ATTTAT-TTTT
75264884 GGAATTTAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
10 31 0.91
11 3 0.09
ACGTcount: A:0.22, C:0.06, G:0.02, T:0.71
Consensus pattern (10 bp):
ATTTATTTTT
Done.