Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 228 of 344
Found at i:75578366 original size:46 final size:46
Alignment explanation
Indices: 75578316--75578491 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
75578306 TGTTTGGGCA
*
75578316 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
75578362 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
75578407 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75578455 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75578492 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75578471 original size:93 final size:93
Alignment explanation
Indices: 75578312--75578484 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
75578302 AGGATGTTTG
* * * *
75578312 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
*
75578377 TTGAGTCTGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
75578405 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
75578470 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
75578485 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:75588683 original size:12 final size:11
Alignment explanation
Indices: 75588639--75588692 Score: 54
Period size: 12 Copynumber: 4.6 Consensus size: 11
75588629 TATCTAATAT
75588639 TTGAAATGGAAA
1 TTGAAAT-GAAA
* *
75588651 ATGATATGAAA
1 TTGAAATGAAA
*
75588662 TTGAAGTGAAA
1 TTGAAATGAAA
75588673 TGTGAAATGAAA
1 T-TGAAATGAAA
75588685 TATGAAAT
1 T-TGAAAT
75588693 TGTGGAATGA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
11 13 0.38
12 21 0.62
ACGTcount: A:0.50, C:0.00, G:0.22, T:0.28
Consensus pattern (11 bp):
TTGAAATGAAA
Found at i:75589054 original size:21 final size:22
Alignment explanation
Indices: 75589029--75589080 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
75589019 TGAATGATAA
75589029 TGAAATGTTGAA-TAAGTGAAT
1 TGAAATGTTGAATTAAGTGAAT
75589050 TGAAATGTTGAATTAAGTGAAT
1 TGAAATGTTGAATTAAGTGAAT
75589072 TGAAATGTT
1 TGAAATGTT
75589081 ATATGATTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 12 0.40
22 18 0.60
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.37
Consensus pattern (22 bp):
TGAAATGTTGAATTAAGTGAAT
Found at i:75590982 original size:45 final size:45
Alignment explanation
Indices: 75590917--75591003 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
75590907 ATCCGTCAAT
*
75590917 TCATATACGGGGGTGCCCATTAGGGCACATAACCGGGAAGCAAAA
1 TCATATACGGGGGTGACCATTAGGGCACATAACCGGGAAGCAAAA
*
75590962 TCATATACGGGGGTGACCATTGGGGCACATAACCGGGAAGCA
1 TCATATACGGGGGTGACCATTAGGGCACATAACCGGGAAGCA
75591004 TACTCTCGAG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.31, C:0.22, G:0.31, T:0.16
Consensus pattern (45 bp):
TCATATACGGGGGTGACCATTAGGGCACATAACCGGGAAGCAAAA
Found at i:75591198 original size:49 final size:48
Alignment explanation
Indices: 75591090--75591199 Score: 109
Period size: 47 Copynumber: 2.3 Consensus size: 48
75591080 TCTGGGGTAT
* **
75591090 ATAATGGGAAGCTTATAAGAGCCATAATTGGGAAGTTCACAAAGAACC
1 ATAACGGGAAGCTTATAAGAGCCATAATCAGGAAGTTCACAAAGAACC
* * *
75591138 ATATCGAGAAGCTTATGAAGAGCC-T-ATCAGGAAGCTT-ACAAAGAGCC
1 ATAACGGGAAGCTTAT-AAGAGCCATAATCAGGAAG-TTCACAAAGAACC
75591185 ATGTAACGGGAAGCT
1 A--TAACGGGAAGCT
75591200 CTAGATAGCC
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
47 17 0.34
48 16 0.32
49 17 0.34
ACGTcount: A:0.39, C:0.16, G:0.25, T:0.20
Consensus pattern (48 bp):
ATAACGGGAAGCTTATAAGAGCCATAATCAGGAAGTTCACAAAGAACC
Found at i:75593114 original size:22 final size:22
Alignment explanation
Indices: 75593089--75593157 Score: 74
Period size: 22 Copynumber: 3.3 Consensus size: 22
75593079 TGGTTGTATG
75593089 TTTGTATGGATTGAATAAGTTC
1 TTTGTATGGATTGAATAAGTTC
* * *
75593111 TTTGTA--G-TTTAAT-TGTGTG
1 TTTGTATGGATTGAATAAGT-TC
75593130 TTTGTATGGATTGAATAAGTTC
1 TTTGTATGGATTGAATAAGTTC
75593152 TTTGTA
1 TTTGTA
75593158 GTTTAATTGT
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
18 2 0.06
19 12 0.33
20 1 0.03
21 1 0.03
22 18 0.50
23 2 0.06
ACGTcount: A:0.23, C:0.03, G:0.23, T:0.51
Consensus pattern (22 bp):
TTTGTATGGATTGAATAAGTTC
Found at i:75593144 original size:41 final size:41
Alignment explanation
Indices: 75593082--75593169 Score: 167
Period size: 41 Copynumber: 2.1 Consensus size: 41
75593072 GGCATATTGG
*
75593082 TTGTATGTTTGTATGGATTGAATAAGTTCTTTGTAGTTTAA
1 TTGTGTGTTTGTATGGATTGAATAAGTTCTTTGTAGTTTAA
75593123 TTGTGTGTTTGTATGGATTGAATAAGTTCTTTGTAGTTTAA
1 TTGTGTGTTTGTATGGATTGAATAAGTTCTTTGTAGTTTAA
75593164 TTGTGT
1 TTGTGT
75593170 ACCTATATGT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.22, C:0.02, G:0.24, T:0.52
Consensus pattern (41 bp):
TTGTGTGTTTGTATGGATTGAATAAGTTCTTTGTAGTTTAA
Found at i:75593357 original size:18 final size:18
Alignment explanation
Indices: 75593331--75593366 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
75593321 GCCAAAACAG
* *
75593331 TATCCATACTTACTATAA
1 TATCAATACTTACCATAA
75593349 TATCAATACTTACCATAA
1 TATCAATACTTACCATAA
75593367 AAGTATCAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.22, G:0.00, T:0.36
Consensus pattern (18 bp):
TATCAATACTTACCATAA
Found at i:75595058 original size:25 final size:25
Alignment explanation
Indices: 75594998--75595085 Score: 117
Period size: 25 Copynumber: 3.6 Consensus size: 25
75594988 CAAAACTCTT
*
75594998 ATGAGCTTCTCGTTATAT-AGCTCGC
1 ATGAGCTTCCCGTTAT-TCAGCTCGC
*
75595023 A-GAGCTTCCCGTTATTCAGCTCAC
1 ATGAGCTTCCCGTTATTCAGCTCGC
*
75595047 ATGAGCTTCCCGTTATTCAGCTCGG
1 ATGAGCTTCCCGTTATTCAGCTCGC
*
75595072 AGGAGCTTCCCGTT
1 ATGAGCTTCCCGTT
75595086 TGTAGCTCGT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
23 1 0.02
24 20 0.36
25 35 0.62
ACGTcount: A:0.18, C:0.28, G:0.22, T:0.32
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATTCAGCTCGC
Found at i:75596527 original size:40 final size:40
Alignment explanation
Indices: 75596483--75596700 Score: 264
Period size: 40 Copynumber: 5.5 Consensus size: 40
75596473 GCTCCTCGTT
* *
75596483 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
75596523 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
75596563 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
75596603 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
75596642 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
75596683 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
75596701 GCCTGGACAT
Statistics
Matches: 157, Mismatches: 16, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
38 2 0.01
39 31 0.20
40 109 0.69
41 15 0.10
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:75596667 original size:79 final size:80
Alignment explanation
Indices: 75596483--75596703 Score: 252
Period size: 79 Copynumber: 2.8 Consensus size: 80
75596473 GCTCCTCGTT
* * * * *
75596483 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATACCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCG
*
75596547 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
*
75596563 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGG
*
75596627 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
** * * * * *
75596642 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCC
1 CAAATACCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACCAATGCCTTCGGGACTTAGCC
75596704 TGGACATCAT
Statistics
Matches: 123, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
78 3 0.02
79 59 0.48
80 57 0.46
81 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:75596667 original size:119 final size:120
Alignment explanation
Indices: 75596485--75596700 Score: 287
Period size: 119 Copynumber: 1.8 Consensus size: 120
75596475 TCCTCGTTCA
* *
75596485 AATGCCTTCGGGACATAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
* *
75596550 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
75596605 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATACCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCC-GAATATAGTAACTCGCACAAATACCTTCGGGA-CTTAACCCGG
* *
75596667 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
75596701 GCCTGGACAT
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 3 0.04
119 57 0.69
120 23 0.28
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:75604578 original size:40 final size:40
Alignment explanation
Indices: 75604532--75604752 Score: 247
Period size: 40 Copynumber: 5.5 Consensus size: 40
75604522 GCTCCTCGTT
*
75604532 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
75604572 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
*
75604612 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
75604652 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * * *
75604691 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
75604732 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
75604753 TGGACATCAT
Statistics
Matches: 157, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 29 0.18
40 112 0.71
41 14 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:75604636 original size:80 final size:80
Alignment explanation
Indices: 75604532--75604749 Score: 273
Period size: 80 Copynumber: 2.7 Consensus size: 80
75604522 GCTCCTCGTT
*
75604532 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
75604597 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* * *
75604612 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
75604675 GAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
* * * * * *
75604691 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTA
75604750 GCCTGGACAT
Statistics
Matches: 119, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
78 4 0.03
79 54 0.45
80 59 0.50
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCA
Found at i:75604716 original size:119 final size:120
Alignment explanation
Indices: 75604534--75604749 Score: 287
Period size: 119 Copynumber: 1.8 Consensus size: 120
75604524 TCCTCGTTCA
* *
75604534 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
* *
75604599 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
75604654 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATACCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATACCTTCGGGA-CTTAACCCGG
* *
75604716 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
75604750 GCCTGGACAT
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.05
119 59 0.71
120 20 0.24
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:75610271 original size:8 final size:8
Alignment explanation
Indices: 75610258--75610282 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
75610248 CAAGTGGTTA
75610258 GTTAGTGG
1 GTTAGTGG
75610266 GTTAGTGG
1 GTTAGTGG
75610274 GTTAGTGG
1 GTTAGTGG
75610282 G
1 G
75610283 AGTTAGGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.52, T:0.36
Consensus pattern (8 bp):
GTTAGTGG
Found at i:75633142 original size:26 final size:24
Alignment explanation
Indices: 75633099--75633157 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 24
75633089 ACATATAACC
*
75633099 TCAATTCAATCAAATTTCTCACATTT
1 TCAATTCAATCAAATTTC-CAC-CTT
**
75633125 TCAATTCAATCATTTTTCCACCTT
1 TCAATTCAATCAAATTTCCACCTT
75633149 TCAA-TCAAT
1 TCAATTCAAT
75633158 ATTCAATCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.17
24 6 0.20
25 3 0.10
26 16 0.53
ACGTcount: A:0.32, C:0.25, G:0.00, T:0.42
Consensus pattern (24 bp):
TCAATTCAATCAAATTTCCACCTT
Found at i:75634096 original size:5 final size:5
Alignment explanation
Indices: 75634088--75634134 Score: 58
Period size: 5 Copynumber: 9.2 Consensus size: 5
75634078 TTTTATTTTA
* * *
75634088 ATAAT ATAAT ATAAA ATAAT ATAAT ATAAA ATAAT AATAAT CTAAT A
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT ATAAT A
75634135 ATATATTTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
5 30 0.86
6 5 0.14
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (5 bp):
ATAAT
Found at i:75634107 original size:15 final size:15
Alignment explanation
Indices: 75634087--75634128 Score: 75
Period size: 15 Copynumber: 2.7 Consensus size: 15
75634077 ATTTTATTTT
75634087 AATAATATAATATAA
1 AATAATATAATATAA
75634102 AATAATATAATATAA
1 AATAATATAATATAA
75634117 AATAATAATAAT
1 AATAAT-ATAAT
75634129 CTAATAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 21 0.81
16 5 0.19
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AATAATATAATATAA
Found at i:75640867 original size:17 final size:17
Alignment explanation
Indices: 75640845--75640879 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
75640835 TTTTGAGAAG
75640845 TTAAAGACATTGTTAAC
1 TTAAAGACATTGTTAAC
75640862 TTAAAGACATTGTTAAC
1 TTAAAGACATTGTTAAC
75640879 T
1 T
75640880 GAAGCTCCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.37
Consensus pattern (17 bp):
TTAAAGACATTGTTAAC
Found at i:75645378 original size:55 final size:55
Alignment explanation
Indices: 75645281--75645389 Score: 139
Period size: 55 Copynumber: 2.0 Consensus size: 55
75645271 CGAGCCTACC
* * *
75645281 AAAACAACACGGGCGTGCAACACGCCAGTGTGGAAGAACCGTGGGCAAACCTGTT
1 AAAACAACACGAGCGTGCAACACGCCAGTGTCGAACAACCGTGGGCAAACCTGTT
* * * *
75645336 AAAACAGCACGAGCGTGCAACACGTCC-GTGTCTAACACCCGTGGTCAAACCTGT
1 AAAACAACACGAGCGTGCAACACG-CCAGTGTCGAACAACCGTGGGCAAACCTGT
75645390 CAAATTAACA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
55 44 0.96
56 2 0.04
ACGTcount: A:0.31, C:0.28, G:0.26, T:0.15
Consensus pattern (55 bp):
AAAACAACACGAGCGTGCAACACGCCAGTGTCGAACAACCGTGGGCAAACCTGTT
Found at i:75652260 original size:40 final size:40
Alignment explanation
Indices: 75652205--75652346 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
75652195 TATTCGAATG
*
75652205 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
75652245 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
75652285 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
75652325 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
75652347 TACTTGGGTT
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 13 0.14
40 79 0.84
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:75659838 original size:25 final size:25
Alignment explanation
Indices: 75659781--75659873 Score: 107
Period size: 25 Copynumber: 3.7 Consensus size: 25
75659771 AGACTCACCA
* *
75659781 CAGCTTGTATGAGCTTACCGATT-TCT
1 CAGCTCGTAAGAGCTTACC-ATTAT-T
*
75659807 CAGCTCGTAAGAGCTTACTATTATT
1 CAGCTCGTAAGAGCTTACCATTATT
* *
75659832 CAGCTCGGAGGAGCTTACCATTATT
1 CAGCTCGTAAGAGCTTACCATTATT
*
75659857 CAGCTCGTATGAGCTTA
1 CAGCTCGTAAGAGCTTA
75659874 TTGTTTATCG
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
25 41 0.71
26 17 0.29
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (25 bp):
CAGCTCGTAAGAGCTTACCATTATT
Found at i:75666860 original size:40 final size:40
Alignment explanation
Indices: 75666776--75666959 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
75666766 TTGAATGCTG
* * * *
75666776 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
75666815 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * * *
75666856 TCCGGGTTAAGTCCCGAAGGCCTTTGTACGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
75666896 TCTGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
75666936 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
75666960 GTATGAGTTA
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 2 0.02
40 109 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:75674619 original size:40 final size:40
Alignment explanation
Indices: 75674535--75674718 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
75674525 TTGAATGCTG
* * * *
75674535 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
75674574 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * * *
75674615 TCCGGGTTATGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
75674655 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
75674695 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
75674719 GTATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:75678339 original size:68 final size:68
Alignment explanation
Indices: 75678257--75678383 Score: 170
Period size: 68 Copynumber: 1.9 Consensus size: 68
75678247 CATTTATCTC
* * *
75678257 TCTCGTAGCTCTCTTGT-CTACATG-GGATACA-TCCCGTATCATACATGTGACCTAGCTACTAC
1 TCTCGTAGCTCTCTTGTAC-ACATGAGG-TACACT-CAGCACCATACATGTGACCTAGCTACTAC
75678319 ATAGTA
63 ATAGTA
*
75678325 TCTCGTAGCTCTCTTGTACACATGATGTACACTCAGCACCATACATGTGACCTAGCTAC
1 TCTCGTAGCTCTCTTGTACACATGAGGTACACTCAGCACCATACATGTGACCTAGCTAC
75678384 GCTCTATCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
68 49 0.94
69 3 0.06
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTACACATGAGGTACACTCAGCACCATACATGTGACCTAGCTACTACATA
GTA
Found at i:75679318 original size:34 final size:34
Alignment explanation
Indices: 75679275--75679342 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
75679265 ATTCCATCCA
75679275 TGTCCAAATTTTTGTCCATATAAAGTATAATGGT
1 TGTCCAAATTTTTGTCCATATAAAGTATAATGGT
75679309 TGTCCAAATTTTTGTCCATATAAAGTATAATGGT
1 TGTCCAAATTTTTGTCCATATAAAGTATAATGGT
75679343 CTAATTACCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (34 bp):
TGTCCAAATTTTTGTCCATATAAAGTATAATGGT
Found at i:75681801 original size:18 final size:19
Alignment explanation
Indices: 75681778--75681816 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
75681768 ATATATTCAC
75681778 ACATTTTCA-CAATTCAAT
1 ACATTTTCATCAATTCAAT
75681796 ACATTTTCATTCAATTCAAT
1 ACATTTTCA-TCAATTCAAT
75681816 A
1 A
75681817 TCAATACTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (19 bp):
ACATTTTCATCAATTCAAT
Found at i:75682487 original size:18 final size:18
Alignment explanation
Indices: 75682456--75682494 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
75682446 AAATTCCTAA
* * *
75682456 TTTCCTTTTTTTTCTTTC
1 TTTCCCTTTCTTTCCTTC
75682474 TTTCCCTTTCTTTCCTTC
1 TTTCCCTTTCTTTCCTTC
75682492 TTT
1 TTT
75682495 TCTTCTCTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTCCCTTTCTTTCCTTC
Found at i:75698287 original size:24 final size:24
Alignment explanation
Indices: 75698241--75698300 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 24
75698231 TTTATATTAT
75698241 ATTATTTTAGTATTTAATAATTTTATAC
1 ATTATTTTA-TA--TAATAATTTTA-AC
*
75698269 ATT-TTTTATATAATCATTTTAAC
1 ATTATTTTATATAATAATTTTAAC
75698292 ATTATTTTA
1 ATTATTTTA
75698301 ATGTTTACAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
23 5 0.17
24 15 0.50
26 2 0.07
27 5 0.17
28 3 0.10
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (24 bp):
ATTATTTTATATAATAATTTTAAC
Found at i:75702337 original size:37 final size:37
Alignment explanation
Indices: 75702275--75702383 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
75702265 AGCTCAGACG
* * *
75702275 AAATCTCCACACGAAGTTATTGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
75702312 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
75702349 TAATCTCTACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
75702384 ATAAATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:75702608 original size:58 final size:55
Alignment explanation
Indices: 75702529--75702721 Score: 218
Period size: 48 Copynumber: 3.7 Consensus size: 55
75702519 GCACATCACC
*
75702529 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATA-ATATA
* *
75702587 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTC-------A
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATAATATA
75702635 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-------A
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAATATA
75702683 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
75702722 TGCATGTTCA
Statistics
Matches: 128, Mismatches: 5, Indels: 14
0.87 0.03 0.10
Matches are distributed among these distances:
48 84 0.66
49 1 0.01
57 1 0.01
58 42 0.33
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (55 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAATATA
Found at i:75702643 original size:48 final size:48
Alignment explanation
Indices: 75702590--75702721 Score: 239
Period size: 48 Copynumber: 2.8 Consensus size: 48
75702580 ATATATATAT
*
75702590 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATAC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATAC
75702638 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
75702686 ATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATA
75702722 TGCATGTTCA
Statistics
Matches: 82, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
48 81 0.99
49 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.36
Consensus pattern (48 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
Found at i:75702770 original size:47 final size:47
Alignment explanation
Indices: 75702691--75702931 Score: 374
Period size: 47 Copynumber: 5.1 Consensus size: 47
75702681 CATACATATT
* * * *
75702691 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
75702738 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
75702785 TCACATTGGCCATTCGGCCTTATCATATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
75702832 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
75702879 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
75702926 TCACAT
1 TCACAT
75702932 AAAATCCTAA
Statistics
Matches: 178, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 178 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:75702856 original size:22 final size:22
Alignment explanation
Indices: 75702831--75702902 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
75702821 GTTCACATTC
75702831 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
75702853 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
75702877 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
75702900 ATC
1 ATC
75702903 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:75705995 original size:8 final size:8
Alignment explanation
Indices: 75705982--75708358 Score: 2683
Period size: 8 Copynumber: 297.0 Consensus size: 8
75705972 CTAGTACTAA
75705982 TATGTATG
1 TATGTATG
75705990 TATGTATG
1 TATGTATG
75705998 TATGTATG
1 TATGTATG
*
75706006 CATGTATG
1 TATGTATG
*
75706014 TATGCATG
1 TATGTATG
*
75706022 CATGTATG
1 TATGTATG
75706030 TATGTATG
1 TATGTATG
*
75706038 CATGTATG
1 TATGTATG
75706046 TATGTATG
1 TATGTATG
*
75706054 CATGTATG
1 TATGTATG
75706062 TATGTATG
1 TATGTATG
*
75706070 CATGTATG
1 TATGTATG
*
75706078 TATGCATG
1 TATGTATG
75706086 TATGTATG
1 TATGTATG
*
75706094 TATGTACG
1 TATGTATG
*
75706102 CATGTATG
1 TATGTATG
75706110 TATGTATG
1 TATGTATG
75706118 TATGTATG
1 TATGTATG
*
75706126 CATGTATG
1 TATGTATG
75706134 TATGTATG
1 TATGTATG
*
75706142 TACGTATG
1 TATGTATG
75706150 TATGTATG
1 TATGTATG
*
75706158 TATGTACG
1 TATGTATG
75706166 TATGTATG
1 TATGTATG
*
75706174 CATGTATG
1 TATGTATG
75706182 TATGTATG
1 TATGTATG
*
75706190 CATGTATG
1 TATGTATG
75706198 TATGTATG
1 TATGTATG
*
75706206 TATGTACG
1 TATGTATG
75706214 TATGTATG
1 TATGTATG
*
75706222 CATGTATG
1 TATGTATG
75706230 TATGTATG
1 TATGTATG
*
75706238 CATGTATG
1 TATGTATG
75706246 TATGTATG
1 TATGTATG
*
75706254 CATGTATG
1 TATGTATG
75706262 TATGTATG
1 TATGTATG
75706270 TATGTATG
1 TATGTATG
*
75706278 CATGTATG
1 TATGTATG
*
75706286 CATGTATG
1 TATGTATG
*
75706294 TACGTATG
1 TATGTATG
75706302 TATGTATG
1 TATGTATG
*
75706310 TACGTATG
1 TATGTATG
*
75706318 TATGCATG
1 TATGTATG
*
75706326 TACGTATG
1 TATGTATG
*
75706334 TATGCATG
1 TATGTATG
* *
75706342 CATGCATG
1 TATGTATG
*
75706350 TATGCATG
1 TATGTATG
* *
75706358 CACGTATG
1 TATGTATG
* * *
75706366 CATGCACG
1 TATGTATG
* *
75706374 CATGCATG
1 TATGTATG
** *
75706382 CGTGCATG
1 TATGTATG
* **
75706390 CATGCGTG
1 TATGTATG
*
75706398 CATGTATG
1 TATGTATG
*
75706406 TATGTACG
1 TATGTATG
*
75706414 CATGTATG
1 TATGTATG
*
75706422 TATGCATG
1 TATGTATG
75706430 TATGTATG
1 TATGTATG
*
75706438 CATGTATG
1 TATGTATG
*
75706446 TATGCATG
1 TATGTATG
75706454 TATGTATG
1 TATGTATG
*
75706462 GATGTATG
1 TATGTATG
75706470 TATGTATG
1 TATGTATG
*
75706478 CATGTATG
1 TATGTATG
75706486 TATGTATG
1 TATGTATG
*
75706494 CATGTATG
1 TATGTATG
75706502 TACATGTATG
1 T--ATGTATG
* *
75706512 CATGCATG
1 TATGTATG
*
75706520 TATGCATG
1 TATGTATG
* *
75706528 CACGTATG
1 TATGTATG
* *
75706536 CATGCATG
1 TATGTATG
*
75706544 TATGCATG
1 TATGTATG
* *
75706552 CACGTATG
1 TATGTATG
* *
75706560 CATGCATG
1 TATGTATG
*
75706568 TATGCATG
1 TATGTATG
*
75706576 CATGTATG
1 TATGTATG
75706584 TATGTATG
1 TATGTATG
*
75706592 CATGTA--
1 TATGTATG
*
75706598 TATGCATG
1 TATGTATG
75706606 TATGTATG
1 TATGTATG
*
75706614 CATGTATG
1 TATGTATG
* *
75706622 CATGCATG
1 TATGTATG
*
75706630 CATGTATG
1 TATGTATG
75706638 TATGTATG
1 TATGTATG
75706646 TATGTATG
1 TATGTATG
*
75706654 CATGTATG
1 TATGTATG
*
75706662 TATGCATG
1 TATGTATG
75706670 TATGTATG
1 TATGTATG
*
75706678 CATGTATG
1 TATGTATG
*
75706686 TATGGATG
1 TATGTATG
75706694 TATGTATG
1 TATGTATG
*
75706702 TATGCATG
1 TATGTATG
75706710 TATGTATG
1 TATGTATG
*
75706718 TATGCATG
1 TATGTATG
75706726 TATGTATG
1 TATGTATG
*
75706734 CATGTATG
1 TATGTATG
*
75706742 CATGTATG
1 TATGTATG
75706750 TATGTATG
1 TATGTATG
*
75706758 CATGTATG
1 TATGTATG
* *
75706766 AATGCATG
1 TATGTATG
*
75706774 CATGTATG
1 TATGTATG
* *
75706782 CATGCATG
1 TATGTATG
75706790 TATGTATG
1 TATGTATG
*
75706798 CATGTATG
1 TATGTATG
75706806 TATGTATG
1 TATGTATG
* *
75706814 CATGCATG
1 TATGTATG
* *
75706822 CATGCATG
1 TATGTATG
*
75706830 CATGTATG
1 TATGTATG
75706838 TATGTATG
1 TATGTATG
*
75706846 TATGCATG
1 TATGTATG
* *
75706854 CATGCATG
1 TATGTATG
*
75706862 CATGTATG
1 TATGTATG
*
75706870 CATGTATG
1 TATGTATG
75706878 TATGTATG
1 TATGTATG
*
75706886 CATGTATG
1 TATGTATG
* *
75706894 CATGCATG
1 TATGTATG
*
75706902 TATGCATG
1 TATGTATG
*
75706910 TATGCATG
1 TATGTATG
75706918 TATGTATG
1 TATGTATG
*
75706926 TATGCATG
1 TATGTATG
75706934 TATGTATG
1 TATGTATG
75706942 TATGTATG
1 TATGTATG
*
75706950 CATGTATG
1 TATGTATG
*
75706958 CATGTATG
1 TATGTATG
*
75706966 TATGCATG
1 TATGTATG
*
75706974 TATGCATG
1 TATGTATG
*
75706982 TATGCATG
1 TATGTATG
*
75706990 TATGCATG
1 TATGTATG
75706998 TATGTATG
1 TATGTATG
75707006 TATGTATG
1 TATGTATG
*
75707014 CATGTATG
1 TATGTATG
* *
75707022 CATATATG
1 TATGTATG
75707030 TATGTATG
1 TATGTATG
*
75707038 CATGTATG
1 TATGTATG
75707046 TATGTATG
1 TATGTATG
*
75707054 CATGTATG
1 TATGTATG
75707062 TATGTATG
1 TATGTATG
*
75707070 TATGCATG
1 TATGTATG
*
75707078 TATGCATG
1 TATGTATG
*
75707086 TATGCATG
1 TATGTATG
75707094 TATGTATG
1 TATGTATG
75707102 TATGTATG
1 TATGTATG
*
75707110 TATGCATG
1 TATGTATG
*
75707118 TATGCATG
1 TATGTATG
*
75707126 TATGTATA
1 TATGTATG
*
75707134 TATGCATG
1 TATGTATG
*
75707142 TATGCATG
1 TATGTATG
75707150 TATGTATG
1 TATGTATG
75707158 TATGTATG
1 TATGTATG
75707166 TATGTATG
1 TATGTATG
*
75707174 TATGCATG
1 TATGTATG
75707182 TATGTATG
1 TATGTATG
*
75707190 CATGTATG
1 TATGTATG
*
75707198 TACGTATG
1 TATGTATG
*
75707206 CATGTATG
1 TATGTATG
*
75707214 TATGCATG
1 TATGTATG
*
75707222 TATGTACG
1 TATGTATG
*
75707230 TATGCATG
1 TATGTATG
*
75707238 TATGCATG
1 TATGTATG
75707246 TATGTATG
1 TATGTATG
*
75707254 TATGCATG
1 TATGTATG
75707262 TATGTATG
1 TATGTATG
*
75707270 CATGTATG
1 TATGTATG
75707278 TATGTATG
1 TATGTATG
* *
75707286 TACGTACG
1 TATGTATG
*
75707294 TATGCATG
1 TATGTATG
75707302 TATGTATG
1 TATGTATG
*
75707310 TACGTATG
1 TATGTATG
75707318 TATGTATG
1 TATGTATG
75707326 TATGTATG
1 TATGTATG
* *
75707334 TACGTACG
1 TATGTATG
*
75707342 TACGTATG
1 TATGTATG
*
75707350 CATGTATG
1 TATGTATG
75707358 TATGTATG
1 TATGTATG
*
75707366 TATATATG
1 TATGTATG
*
75707374 TACGTATG
1 TATGTATG
75707382 TATGTATG
1 TATGTATG
75707390 TATGTATG
1 TATGTATG
*
75707398 TACGTATG
1 TATGTATG
* *
75707406 TATATACG
1 TATGTATG
*
75707414 TATGTATA
1 TATGTATG
75707422 TATGTATG
1 TATGTATG
75707430 TATGTATG
1 TATGTATG
*
75707438 TATGTACG
1 TATGTATG
*
75707446 TATGTACG
1 TATGTATG
75707454 TATGTATG
1 TATGTATG
*
75707462 TACGTATG
1 TATGTATG
*
75707470 TATGTACG
1 TATGTATG
75707478 TATGTATG
1 TATGTATG
*
75707486 TATGTACG
1 TATGTATG
** *
75707494 TATGGGGTT
1 TAT-GTATG
*
75707503 TAGGGT-T-
1 TA-TGTATG
* *
75707510 TAGGGCATG
1 TA-TGTATG
75707519 TATGTATG
1 TATGTATG
*
75707527 TATGCATG
1 TATGTATG
75707535 TATGTATG
1 TATGTATG
75707543 TATGTATG
1 TATGTATG
*
75707551 CATGTATG
1 TATGTATG
*
75707559 CATGTATG
1 TATGTATG
*
75707567 CATGTATG
1 TATGTATG
75707575 TATGTATG
1 TATGTATG
75707583 TATGTATG
1 TATGTATG
*
75707591 CATGTATG
1 TATGTATG
*
75707599 CATGTATG
1 TATGTATG
75707607 TATGTATG
1 TATGTATG
*
75707615 CATGTATG
1 TATGTATG
*
75707623 CATGTATG
1 TATGTATG
75707631 TATGTATG
1 TATGTATG
75707639 TATGTATG
1 TATGTATG
75707647 TATGTATG
1 TATGTATG
75707655 TATGTATG
1 TATGTATG
* *
75707663 CATGTATA
1 TATGTATG
*
75707671 TATGCATG
1 TATGTATG
*
75707679 TATGCATG
1 TATGTATG
75707687 TATGTATG
1 TATGTATG
*
75707695 TATGCATG
1 TATGTATG
*
75707703 TATGCATG
1 TATGTATG
75707711 TATGTATG
1 TATGTATG
75707719 TATGTATG
1 TATGTATG
75707727 TATGTATG
1 TATGTATG
75707735 TATGTATG
1 TATGTATG
75707743 TATGTATG
1 TATGTATG
*
75707751 CATGTATG
1 TATGTATG
*
75707759 TATGCATG
1 TATGTATG
75707767 TATGTATG
1 TATGTATG
* *
75707775 TACGTACG
1 TATGTATG
*
75707783 TATGCATG
1 TATGTATG
75707791 TATGTATG
1 TATGTATG
*
75707799 TACGTATG
1 TATGTATG
75707807 TATGTATG
1 TATGTATG
75707815 TATGTATG
1 TATGTATG
*
75707823 TATGTACG
1 TATGTATG
* *
75707831 TACGTACG
1 TATGTATG
*
75707839 TATGCATG
1 TATGTATG
75707847 TATGTATG
1 TATGTATG
75707855 TATGTATG
1 TATGTATG
75707863 TATGTATG
1 TATGTATG
*
75707871 TACGTATG
1 TATGTATG
75707879 TATGTATG
1 TATGTATG
*
75707887 TATGTACG
1 TATGTATG
*
75707895 TATGTATA
1 TATGTATG
* *
75707903 TACGTACG
1 TATGTATG
75707911 TATGTATG
1 TATGTATG
75707919 TATGTATG
1 TATGTATG
*
75707927 TTTGTATG
1 TATGTATG
*
75707935 TATGTACG
1 TATGTATG
*
75707943 CATGTATG
1 TATGTATG
*
75707951 TACGTATG
1 TATGTATG
* *
75707959 CATGTACG
1 TATGTATG
75707967 TATGTATG
1 TATGTATG
* *
75707975 TACGTACG
1 TATGTATG
75707983 TATGTATG
1 TATGTATG
*
75707991 TATGCATG
1 TATGTATG
*
75707999 TATGTACG
1 TATGTATG
*
75708007 TATGCATG
1 TATGTATG
*
75708015 TACGTATG
1 TATGTATG
*
75708023 TATGTACG
1 TATGTATG
*
75708031 TACGTATG
1 TATGTATG
75708039 TATGTATG
1 TATGTATG
* *
75708047 CACGTATG
1 TATGTATG
* *
75708055 CATGCATG
1 TATGTATG
*
75708063 CATGTATG
1 TATGTATG
* *
75708071 CATGCATG
1 TATGTATG
*
75708079 CATGTATG
1 TATGTATG
* *
75708087 CATGCATG
1 TATGTATG
*
75708095 CATGTATG
1 TATGTATG
* *
75708103 CATGCATG
1 TATGTATG
*
75708111 CATGTATG
1 TATGTATG
*
75708119 CATGTATG
1 TATGTATG
75708127 TATGTATG
1 TATGTATG
75708135 TATGTATG
1 TATGTATG
75708143 TATGTATG
1 TATGTATG
75708151 TATGTATG
1 TATGTATG
75708159 TATGTATG
1 TATGTATG
*
75708167 TATGGATG
1 TATGTATG
75708175 TATGTATG
1 TATGTATG
*
75708183 CATGTATG
1 TATGTATG
75708191 TATGTATG
1 TATGTATG
75708199 TATGTATG
1 TATGTATG
*
75708207 TATGGATG
1 TATGTATG
75708215 TATGTATG
1 TATGTATG
*
75708223 CATGTATG
1 TATGTATG
*
75708231 TATGCATG
1 TATGTATG
*
75708239 TATGGATG
1 TATGTATG
75708247 TATGTATG
1 TATGTATG
75708255 TATGTATG
1 TATGTATG
*
75708263 CATGTATG
1 TATGTATG
*
75708271 TATGCATG
1 TATGTATG
75708279 TATGTATG
1 TATGTATG
75708287 TATGTATG
1 TATGTATG
75708295 TATGTATG
1 TATGTATG
75708303 TATGTATG
1 TATGTATG
75708311 TATGTATG
1 TATGTATG
75708319 TATGTATG
1 TATGTATG
*
75708327 TATGCATG
1 TATGTATG
75708335 TATGTATG
1 TATGTATG
75708343 TATGTATG
1 TATGTATG
75708351 TATGTATG
1 TATGTATG
75708359 AATCAAGTAT
Statistics
Matches: 2038, Mismatches: 323, Indels: 16
0.86 0.14 0.01
Matches are distributed among these distances:
6 4 0.00
7 5 0.00
8 2016 0.99
9 6 0.00
10 7 0.00
ACGTcount: A:0.25, C:0.08, G:0.25, T:0.41
Consensus pattern (8 bp):
TATGTATG
Found at i:75705999 original size:12 final size:12
Alignment explanation
Indices: 75705982--75708358 Score: 2683
Period size: 12 Copynumber: 198.0 Consensus size: 12
75705972 CTAGTACTAA
75705982 TATGTATGTATG
1 TATGTATGTATG
75705994 TATGTATGTATG
1 TATGTATGTATG
*
75706006 CATGTATGTATG
1 TATGTATGTATG
* *
75706018 CATGCATGTATG
1 TATGTATGTATG
*
75706030 TATGTATGCATG
1 TATGTATGTATG
75706042 TATGTATGTATG
1 TATGTATGTATG
*
75706054 CATGTATGTATG
1 TATGTATGTATG
*
75706066 TATGCATGTATG
1 TATGTATGTATG
*
75706078 TATGCATGTATG
1 TATGTATGTATG
*
75706090 TATGTATGTACG
1 TATGTATGTATG
*
75706102 CATGTATGTATG
1 TATGTATGTATG
75706114 TATGTATGTATG
1 TATGTATGTATG
*
75706126 CATGTATGTATG
1 TATGTATGTATG
*
75706138 TATGTACGTATG
1 TATGTATGTATG
75706150 TATGTATGTATG
1 TATGTATGTATG
*
75706162 TACGTATGTATG
1 TATGTATGTATG
*
75706174 CATGTATGTATG
1 TATGTATGTATG
*
75706186 TATGCATGTATG
1 TATGTATGTATG
75706198 TATGTATGTATG
1 TATGTATGTATG
*
75706210 TACGTATGTATG
1 TATGTATGTATG
*
75706222 CATGTATGTATG
1 TATGTATGTATG
*
75706234 TATGCATGTATG
1 TATGTATGTATG
*
75706246 TATGTATGCATG
1 TATGTATGTATG
75706258 TATGTATGTATG
1 TATGTATGTATG
*
75706270 TATGTATGCATG
1 TATGTATGTATG
*
75706282 TATGCATGTATG
1 TATGTATGTATG
*
75706294 TACGTATGTATG
1 TATGTATGTATG
*
75706306 TATGTACGTATG
1 TATGTATGTATG
* *
75706318 TATGCATGTACG
1 TATGTATGTATG
*
75706330 TATGTATGCATG
1 TATGTATGTATG
* *
75706342 CATGCATGTATG
1 TATGTATGTATG
* * *
75706354 CATGCACGTATG
1 TATGTATGTATG
* * * *
75706366 CATGCACGCATG
1 TATGTATGTATG
* ** *
75706378 CATGCGTGCATG
1 TATGTATGTATG
* ** *
75706390 CATGCGTGCATG
1 TATGTATGTATG
*
75706402 TATGTATGTACG
1 TATGTATGTATG
*
75706414 CATGTATGTATG
1 TATGTATGTATG
*
75706426 CATGTATGTATG
1 TATGTATGTATG
*
75706438 CATGTATGTATG
1 TATGTATGTATG
*
75706450 CATGTATGTATG
1 TATGTATGTATG
*
75706462 GATGTATGTATG
1 TATGTATGTATG
*
75706474 TATGCATGTATG
1 TATGTATGTATG
*
75706486 TATGTATGCATG
1 TATGTATGTATG
75706498 TATGTACATGTATG
1 TATGT--ATGTATG
* *
75706512 CATGCATGTATG
1 TATGTATGTATG
* * *
75706524 CATGCACGTATG
1 TATGTATGTATG
* *
75706536 CATGCATGTATG
1 TATGTATGTATG
* * *
75706548 CATGCACGTATG
1 TATGTATGTATG
* *
75706560 CATGCATGTATG
1 TATGTATGTATG
* *
75706572 CATGCATGTATG
1 TATGTATGTATG
*
75706584 TATGTATGCATG
1 TATGTATGTATG
*
75706596 TA--TATGCATG
1 TATGTATGTATG
*
75706606 TATGTATGCATG
1 TATGTATGTATG
* *
75706618 TATGCATGCATG
1 TATGTATGTATG
*
75706630 CATGTATGTATG
1 TATGTATGTATG
75706642 TATGTATGTATG
1 TATGTATGTATG
*
75706654 CATGTATGTATG
1 TATGTATGTATG
*
75706666 CATGTATGTATG
1 TATGTATGTATG
*
75706678 CATGTATGTATG
1 TATGTATGTATG
*
75706690 GATGTATGTATG
1 TATGTATGTATG
*
75706702 TATGCATGTATG
1 TATGTATGTATG
*
75706714 TATGTATGCATG
1 TATGTATGTATG
*
75706726 TATGTATGCATG
1 TATGTATGTATG
*
75706738 TATGCATGTATG
1 TATGTATGTATG
*
75706750 TATGTATGCATG
1 TATGTATGTATG
* *
75706762 TATGAATGCATG
1 TATGTATGTATG
* *
75706774 CATGTATGCATG
1 TATGTATGTATG
*
75706786 CATGTATGTATG
1 TATGTATGTATG
*
75706798 CATGTATGTATG
1 TATGTATGTATG
* *
75706810 TATGCATGCATG
1 TATGTATGTATG
* * *
75706822 CATGCATGCATG
1 TATGTATGTATG
75706834 TATGTATGTATG
1 TATGTATGTATG
* *
75706846 TATGCATGCATG
1 TATGTATGTATG
* *
75706858 CATGCATGTATG
1 TATGTATGTATG
*
75706870 CATGTATGTATG
1 TATGTATGTATG
*
75706882 TATGCATGTATG
1 TATGTATGTATG
* *
75706894 CATGCATGTATG
1 TATGTATGTATG
* *
75706906 CATGTATGCATG
1 TATGTATGTATG
75706918 TATGTATGTATG
1 TATGTATGTATG
*
75706930 CATGTATGTATG
1 TATGTATGTATG
*
75706942 TATGTATGCATG
1 TATGTATGTATG
*
75706954 TATGCATGTATG
1 TATGTATGTATG
*
75706966 TATGCATGTATG
1 TATGTATGTATG
* *
75706978 CATGTATGCATG
1 TATGTATGTATG
*
75706990 TATGCATGTATG
1 TATGTATGTATG
75707002 TATGTATGTATG
1 TATGTATGTATG
* * *
75707014 CATGTATGCATA
1 TATGTATGTATG
75707026 TATGTATGTATG
1 TATGTATGTATG
*
75707038 CATGTATGTATG
1 TATGTATGTATG
*
75707050 TATGCATGTATG
1 TATGTATGTATG
75707062 TATGTATGTATG
1 TATGTATGTATG
* *
75707074 CATGTATGCATG
1 TATGTATGTATG
*
75707086 TATGCATGTATG
1 TATGTATGTATG
75707098 TATGTATGTATG
1 TATGTATGTATG
*
75707110 TATGCATGTATG
1 TATGTATGTATG
* *
75707122 CATGTATGTATA
1 TATGTATGTATG
*
75707134 TATGCATGTATG
1 TATGTATGTATG
*
75707146 CATGTATGTATG
1 TATGTATGTATG
75707158 TATGTATGTATG
1 TATGTATGTATG
*
75707170 TATGTATGCATG
1 TATGTATGTATG
*
75707182 TATGTATGCATG
1 TATGTATGTATG
*
75707194 TATGTACGTATG
1 TATGTATGTATG
*
75707206 CATGTATGTATG
1 TATGTATGTATG
* *
75707218 CATGTATGTACG
1 TATGTATGTATG
*
75707230 TATGCATGTATG
1 TATGTATGTATG
*
75707242 CATGTATGTATG
1 TATGTATGTATG
*
75707254 TATGCATGTATG
1 TATGTATGTATG
*
75707266 TATGCATGTATG
1 TATGTATGTATG
*
75707278 TATGTATGTACG
1 TATGTATGTATG
* *
75707290 TACGTATGCATG
1 TATGTATGTATG
*
75707302 TATGTATGTACG
1 TATGTATGTATG
75707314 TATGTATGTATG
1 TATGTATGTATG
*
75707326 TATGTATGTACG
1 TATGTATGTATG
* *
75707338 TACGTACGTATG
1 TATGTATGTATG
*
75707350 CATGTATGTATG
1 TATGTATGTATG
*
75707362 TATGTATATATG
1 TATGTATGTATG
*
75707374 TACGTATGTATG
1 TATGTATGTATG
75707386 TATGTATGTATG
1 TATGTATGTATG
* *
75707398 TACGTATGTATA
1 TATGTATGTATG
* *
75707410 TACGTATGTATA
1 TATGTATGTATG
75707422 TATGTATGTATG
1 TATGTATGTATG
*
75707434 TATGTATGTACG
1 TATGTATGTATG
*
75707446 TATGTACGTATG
1 TATGTATGTATG
*
75707458 TATGTACGTATG
1 TATGTATGTATG
*
75707470 TATGTACGTATG
1 TATGTATGTATG
*
75707482 TATGTATGTACG
1 TATGTATGTATG
** * *
75707494 TATGGGGTTTAGGG
1 TAT-GTATGTA-TG
* *
75707508 T-T-TAGGGCATG
1 TATGTA-TGTATG
75707519 TATGTATGTATG
1 TATGTATGTATG
*
75707531 CATGTATGTATG
1 TATGTATGTATG
*
75707543 TATGTATGCATG
1 TATGTATGTATG
*
75707555 TATGCATGTATG
1 TATGTATGTATG
*
75707567 CATGTATGTATG
1 TATGTATGTATG
75707579 TATGTATGTATG
1 TATGTATGTATG
* *
75707591 CATGTATGCATG
1 TATGTATGTATG
75707603 TATGTATGTATG
1 TATGTATGTATG
* *
75707615 CATGTATGCATG
1 TATGTATGTATG
75707627 TATGTATGTATG
1 TATGTATGTATG
75707639 TATGTATGTATG
1 TATGTATGTATG
75707651 TATGTATGTATG
1 TATGTATGTATG
* *
75707663 CATGTATATATG
1 TATGTATGTATG
* *
75707675 CATGTATGCATG
1 TATGTATGTATG
75707687 TATGTATGTATG
1 TATGTATGTATG
* *
75707699 CATGTATGCATG
1 TATGTATGTATG
75707711 TATGTATGTATG
1 TATGTATGTATG
75707723 TATGTATGTATG
1 TATGTATGTATG
75707735 TATGTATGTATG
1 TATGTATGTATG
*
75707747 TATGCATGTATG
1 TATGTATGTATG
*
75707759 TATGCATGTATG
1 TATGTATGTATG
* *
75707771 TATGTACGTACG
1 TATGTATGTATG
*
75707783 TATGCATGTATG
1 TATGTATGTATG
*
75707795 TATGTACGTATG
1 TATGTATGTATG
75707807 TATGTATGTATG
1 TATGTATGTATG
*
75707819 TATGTATGTACG
1 TATGTATGTATG
* *
75707831 TACGTACGTATG
1 TATGTATGTATG
*
75707843 CATGTATGTATG
1 TATGTATGTATG
75707855 TATGTATGTATG
1 TATGTATGTATG
*
75707867 TATGTACGTATG
1 TATGTATGTATG
75707879 TATGTATGTATG
1 TATGTATGTATG
* *
75707891 TACGTATGTATA
1 TATGTATGTATG
* *
75707903 TACGTACGTATG
1 TATGTATGTATG
75707915 TATGTATGTATG
1 TATGTATGTATG
*
75707927 TTTGTATGTATG
1 TATGTATGTATG
* *
75707939 TACGCATGTATG
1 TATGTATGTATG
* *
75707951 TACGTATGCATG
1 TATGTATGTATG
*
75707963 TACGTATGTATG
1 TATGTATGTATG
* *
75707975 TACGTACGTATG
1 TATGTATGTATG
*
75707987 TATGTATGCATG
1 TATGTATGTATG
*
75707999 TATGTACGTATG
1 TATGTATGTATG
* *
75708011 CATGTACGTATG
1 TATGTATGTATG
* *
75708023 TATGTACGTACG
1 TATGTATGTATG
75708035 TATGTATGTATG
1 TATGTATGTATG
* * *
75708047 CACGTATGCATG
1 TATGTATGTATG
* *
75708059 CATGCATGTATG
1 TATGTATGTATG
* * *
75708071 CATGCATGCATG
1 TATGTATGTATG
* *
75708083 TATGCATGCATG
1 TATGTATGTATG
* *
75708095 CATGTATGCATG
1 TATGTATGTATG
* *
75708107 CATGCATGTATG
1 TATGTATGTATG
*
75708119 CATGTATGTATG
1 TATGTATGTATG
75708131 TATGTATGTATG
1 TATGTATGTATG
75708143 TATGTATGTATG
1 TATGTATGTATG
75708155 TATGTATGTATG
1 TATGTATGTATG
*
75708167 TATGGATGTATG
1 TATGTATGTATG
*
75708179 TATGCATGTATG
1 TATGTATGTATG
75708191 TATGTATGTATG
1 TATGTATGTATG
*
75708203 TATGTATGGATG
1 TATGTATGTATG
*
75708215 TATGTATGCATG
1 TATGTATGTATG
*
75708227 TATGTATGCATG
1 TATGTATGTATG
*
75708239 TATGGATGTATG
1 TATGTATGTATG
75708251 TATGTATGTATG
1 TATGTATGTATG
*
75708263 CATGTATGTATG
1 TATGTATGTATG
*
75708275 CATGTATGTATG
1 TATGTATGTATG
75708287 TATGTATGTATG
1 TATGTATGTATG
75708299 TATGTATGTATG
1 TATGTATGTATG
75708311 TATGTATGTATG
1 TATGTATGTATG
*
75708323 TATGTATGCATG
1 TATGTATGTATG
75708335 TATGTATGTATG
1 TATGTATGTATG
75708347 TATGTATGTATG
1 TATGTATGTATG
75708359 AATCAAGTAT
Statistics
Matches: 2055, Mismatches: 301, Indels: 18
0.87 0.13 0.01
Matches are distributed among these distances:
10 10 0.00
11 2 0.00
12 2025 0.99
13 7 0.00
14 11 0.01
ACGTcount: A:0.25, C:0.08, G:0.25, T:0.41
Consensus pattern (12 bp):
TATGTATGTATG
Found at i:75717176 original size:47 final size:47
Alignment explanation
Indices: 75717107--75717202 Score: 167
Period size: 47 Copynumber: 2.0 Consensus size: 47
75717097 AGTGGAAGGC
75717107 TTGTTAATTAGGAACTTTTAATG-GTTTTTAAAGGGTAAAATAATAAA
1 TTGTTAATTAGGAACTTTTAATGAG-TTTTAAAGGGTAAAATAATAAA
*
75717154 TTGTTAATTAGGAGCTTTTAATGAGTTTTAAAGGGTAAAATAATAAA
1 TTGTTAATTAGGAACTTTTAATGAGTTTTAAAGGGTAAAATAATAAA
75717201 TT
1 TT
75717203 AATAATTAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
47 46 0.98
48 1 0.02
ACGTcount: A:0.40, C:0.02, G:0.18, T:0.41
Consensus pattern (47 bp):
TTGTTAATTAGGAACTTTTAATGAGTTTTAAAGGGTAAAATAATAAA
Found at i:75718377 original size:6 final size:6
Alignment explanation
Indices: 75718314--75718375 Score: 81
Period size: 6 Copynumber: 10.3 Consensus size: 6
75718304 TGTGTGCATA
* *
75718314 TACAGT TACAGT TACAGT TACAGT TACTA-T TATAGT TACAGT TACTGT
1 TACAGT TACAGT TACAGT TACAGT TAC-AGT TACAGT TACAGT TACAGT
*
75718362 TACAGT TATAGT TA
1 TACAGT TACAGT TA
75718376 TATGCACACT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
5 1 0.02
6 47 0.96
7 1 0.02
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.40
Consensus pattern (6 bp):
TACAGT
Found at i:75719706 original size:46 final size:48
Alignment explanation
Indices: 75719617--75719706 Score: 139
Period size: 46 Copynumber: 1.9 Consensus size: 48
75719607 ATTTGTATGA
* *
75719617 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACAAGT
1 GCTAGTGTAAGACCAAGTCTGGGACATGGCATCGGCATCGAGACAAGT
*
75719665 GCTAGTGTAAGA-CAAGTCTGGGACAT-GCATCGGCCTCGAGAC
1 GCTAGTGTAAGACCAAGTCTGGGACATGGCATCGGCATCGAGAC
75719707 GTAAGCCAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
46 14 0.36
47 13 0.33
48 12 0.31
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (48 bp):
GCTAGTGTAAGACCAAGTCTGGGACATGGCATCGGCATCGAGACAAGT
Found at i:75719723 original size:46 final size:45
Alignment explanation
Indices: 75719633--75719738 Score: 115
Period size: 46 Copynumber: 2.3 Consensus size: 45
75719623 GTAAGACCAT
* * *
75719633 GTCTGGGACATGGCATCGGCATTGAGACAAGTGCTAGTGTAAGACAA
1 GTCTGGGACAT-GCATCGGCATCGAGACAAG-GCCAGTGCAAGACAA
* *
75719680 GTCTGGGACATGCATCGGCCTCGAGACGTAA-GCCAGTGCAAGACAT
1 GTCTGGGACATGCATCGGCATCGAGAC--AAGGCCAGTGCAAGACAA
*
75719726 GTTTGGGACATGC
1 GTCTGGGACATGC
75719739 GTTGGCTACG
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
46 38 0.75
47 11 0.22
48 2 0.04
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (45 bp):
GTCTGGGACATGCATCGGCATCGAGACAAGGCCAGTGCAAGACAA
Found at i:75742429 original size:79 final size:81
Alignment explanation
Indices: 75742318--75742499 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 81
75742308 GCTACTCGTT
* *
75742318 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
75742382 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
75742398 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
75742461 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
75742478 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
75742500 AGACATCATT
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
78 4 0.04
79 55 0.62
80 30 0.34
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:75742435 original size:39 final size:40
Alignment explanation
Indices: 75742318--75742499 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
75742308 GCTACTCGTT
*
75742318 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
75742358 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
75742398 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
75742437 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
75742478 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
75742500 AGACATCATT
Statistics
Matches: 124, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 76 0.61
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:75744428 original size:28 final size:28
Alignment explanation
Indices: 75744388--75744452 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
75744378 ATGTACTAGA
*
75744388 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
75744416 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
75744444 ATACCCCTA
1 ATACCCCTA
75744453 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:75744599 original size:28 final size:27
Alignment explanation
Indices: 75744558--75744647 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 27
75744548 AGGAAGCGTC
75744558 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
75744586 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
75744613 CTGGTGGCACTACCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
75744642 CTGGTG
1 CTGGTG
75744648 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 22 0.42
28 23 0.44
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:75744616 original size:27 final size:28
Alignment explanation
Indices: 75744570--75744647 Score: 95
Period size: 27 Copynumber: 2.8 Consensus size: 28
75744560 GGTGGCTATG
* * *
75744570 CCACAAATTATCTGTTCTGGTGGCCCTG
1 CCACAAAATATCTGTTCTGGTGGCACTA
**
75744598 CCAC-GTATATCTGTTCTGGTGGCACTA
1 CCACAAAATATCTGTTCTGGTGGCACTA
75744625 CCACAAAATATCTGTATCTGGTG
1 CCACAAAATATCTGT-TCTGGTG
75744648 ACTCTGTCAC
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
27 22 0.54
28 12 0.29
29 7 0.17
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
CCACAAAATATCTGTTCTGGTGGCACTA
Found at i:75745135 original size:19 final size:19
Alignment explanation
Indices: 75745111--75745149 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
75745101 TTTTAATTAT
* *
75745111 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
75745130 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
75745149 T
1 T
75745150 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:75752377 original size:18 final size:19
Alignment explanation
Indices: 75752356--75752397 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
75752346 AAGTAATTTC
* *
75752356 AAAATATAAATAAAGA-TA
1 AAAATATAAAAAAAAAGTA
75752374 AAAAT-TAAAAAAAAAGTA
1 AAAATATAAAAAAAAAGTA
75752392 AAAATA
1 AAAATA
75752398 AATAATAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (19 bp):
AAAATATAAAAAAAAAGTA
Found at i:75752382 original size:17 final size:18
Alignment explanation
Indices: 75752356--75752402 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
75752346 AAGTAATTTC
*
75752356 AAAATATAAATAAAGA-TA
1 AAAAT-TAAATAAAAAGTA
*
75752374 AAAATTAAAAAAAAAGTA
1 AAAATTAAATAAAAAGTA
75752392 AAAA-TAAATAA
1 AAAATTAAATAA
75752403 TAGGTGTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (18 bp):
AAAATTAAATAAAAAGTA
Found at i:75758464 original size:40 final size:40
Alignment explanation
Indices: 75758366--75758535 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
75758356 TCCTCGTTCA
* * * ** *
75758366 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* *
75758405 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGTACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
75758445 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* ** * *
75758485 AATGCCTTCGAGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
75758525 AAGGCCTTCGG
1 AATGCCTTCGG
75758536 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 33 0.29
40 82 0.71
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:75758467 original size:79 final size:80
Alignment explanation
Indices: 75758366--75758512 Score: 224
Period size: 79 Copynumber: 1.9 Consensus size: 80
75758356 TCCTCGTTCA
* * * *
75758366 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACGAATGCCTTCGAGACATAACCCGGAT
75758430 TTAACAACTCGTACG
66 TTAACAACTCGTACG
* * *
75758445 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGAGACTTAACCCGGAT
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACGAATGCCTTCGAGACATAACCCGGAT
75758510 TTA
66 TTA
75758513 GTATCTCGCA
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
79 34 0.57
80 26 0.43
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACGAATGCCTTCGAGACATAACCCGGAT
TTAACAACTCGTACG
Found at i:75758532 original size:80 final size:79
Alignment explanation
Indices: 75758364--75758535 Score: 218
Period size: 80 Copynumber: 2.2 Consensus size: 79
75758354 GCTCCTCGTT
* * * *
75758364 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCACACAATGCCTTCGAGACATAACCCGGA
*
75758429 TTTAACAACTCGTA
66 TTTAACAACTCGCA
* * * *
75758443 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGAGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCACAC-AATGCCTTCGAGACATAACCCGG
** *
75758508 ATTTAGTATCTCGCA
65 ATTTAACAACTCGCA
*
75758523 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
75758536 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
79 35 0.45
80 43 0.55
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCACACAATGCCTTCGAGACATAACCCGGA
TTTAACAACTCGCA
Found at i:75758548 original size:40 final size:40
Alignment explanation
Indices: 75758364--75758588 Score: 168
Period size: 40 Copynumber: 5.7 Consensus size: 40
75758354 GCTCCTCGTT
* * * * * * *
75758364 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAAGGCCTTCGAGACTTAACCCGGATTTAATAACTCGCA
* * * * *
75758404 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGTA
1 CAAAGGCCTTCGAGACTTAACCCGGATTTAATAACTCGCA
* * *
75758443 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAAGGCCTTCGAGACTTAACCCGGATTTAATAACTCGCA
* * * *
75758483 CGAATGCCTTCGAGACTTAACCCGGATTTAGTATCTCGCA
1 CAAAGGCCTTCGAGACTTAACCCGGATTTAATAACTCGCA
** * * * *
75758523 CAAAGGCCTTCG-GATCTTAGTCCGGATATATTCACTTAGCA
1 CAAAGGCCTTCGAGA-CTTAACCCGGATTTAATAAC-TCGCA
* *
75758564 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAAGGCCTTCGAGACTTAACCCGGA
75758589 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
39 35 0.22
40 114 0.72
41 10 0.06
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAAGGCCTTCGAGACTTAACCCGGATTTAATAACTCGCA
Found at i:75758597 original size:41 final size:41
Alignment explanation
Indices: 75758520--75758597 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
75758510 TTAGTATCTC
* * *
75758520 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
75758561 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
75758598 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:75770181 original size:6 final size:6
Alignment explanation
Indices: 75770163--75770237 Score: 55
Period size: 6 Copynumber: 12.3 Consensus size: 6
75770153 AAGAAACATT
* * * * *
75770163 ATCAGA A-CTAGA ATGAGA ATCAGA AACAGA ATTAGA ATCAAA ATCAGT
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
*
75770211 ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA AT
75770238 GTGAATGCAA
Statistics
Matches: 52, Mismatches: 12, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
5 3 0.06
6 45 0.87
7 3 0.06
8 1 0.02
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:75771324 original size:27 final size:27
Alignment explanation
Indices: 75771233--75771315 Score: 123
Period size: 27 Copynumber: 3.1 Consensus size: 27
75771223 GGGCATATTC
* *
75771233 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
75771260 GTCACTTTACCCTACAGGGGCTTTACA
1 GTCACTTTACCCTACAGGGGCTTTACG
75771287 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
75771314 GT
1 GT
75771316 TTTTTTACCT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 50 0.98
28 1 0.02
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:75771408 original size:27 final size:27
Alignment explanation
Indices: 75771378--75771475 Score: 83
Period size: 27 Copynumber: 3.6 Consensus size: 27
75771368 GTAAATCTAC
*
75771378 AAACTAATGGTATTTC-AGTAATTTTGT
1 AAACCAATGGTATTTCTA-TAATTTTGT
75771405 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAATGGTATTTCTATAATTTTGT
* * * *
75771431 AGAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAA-CCAATGGTATTTCTATAATTTTGT
* *
75771461 AAATCAGTGGTATTT
1 AAACCAATGGTATTT
75771476 TGGTAATTCT
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
26 1 0.02
27 32 0.54
28 7 0.12
29 18 0.31
30 1 0.02
ACGTcount: A:0.33, C:0.07, G:0.16, T:0.44
Consensus pattern (27 bp):
AAACCAATGGTATTTCTATAATTTTGT
Found at i:75771551 original size:27 final size:27
Alignment explanation
Indices: 75771515--75771659 Score: 188
Period size: 27 Copynumber: 5.4 Consensus size: 27
75771505 GTAATTTCAC
*
75771515 AATCGAGGGTAAAATGATAATTTTGTA
1 AATCGAGGGTAAAATGATAATTCTGTA
*
75771542 AATCTAGGGTAAAATGATAATTCTGTA
1 AATCGAGGGTAAAATGATAATTCTGTA
* * *
75771569 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGATAATTCTGTA
75771596 AATCGAGGGTAAAAT-AGTAATTCTGTA
1 AATCGAGGGTAAAATGA-TAATTCTGTA
* *
75771623 AATC-AGGGGTAAAACGATAATTCTGTC
1 AATCGA-GGGTAAAATGATAATTCTGTA
75771650 AATCG-GGGTA
1 AATCGAGGGTA
75771660 CTTTGGTAAT
Statistics
Matches: 103, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
26 6 0.06
27 96 0.93
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGATAATTCTGTA
Found at i:75775098 original size:50 final size:48
Alignment explanation
Indices: 75774991--75775173 Score: 213
Period size: 50 Copynumber: 3.7 Consensus size: 48
75774981 TTGGTACGCA
* * * *
75774991 TAGTAGCCTGTACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTAT-CGATACACG
* **
75775040 TAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATC-GATACACG
* * *
75775090 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCGA-TACACG
*
75775141 TAGTAGCCTGCACTTAGTACTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
75775174 TCACAATAGA
Statistics
Matches: 114, Mismatches: 15, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
49 30 0.26
50 46 0.40
51 38 0.33
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGATACACG
Found at i:75780227 original size:49 final size:49
Alignment explanation
Indices: 75780163--75780346 Score: 217
Period size: 49 Copynumber: 3.7 Consensus size: 49
75780153 TAGCCAAAGC
* * * * *
75780163 TATCTAGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACCAAT
1 TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
*
75780212 TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * *
75780262 CAT-CTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCCAG-TACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* *
75780313 TATCGAGTACGCATAGTAGCCTGCACTTAGTACT
1 TATCCAGTACACATAGTAGCCTGCACTTAGTACT
75780347 TAATATGTGA
Statistics
Matches: 114, Mismatches: 16, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
49 43 0.38
50 42 0.37
51 28 0.25
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:75780289 original size:50 final size:49
Alignment explanation
Indices: 75780163--75780346 Score: 226
Period size: 50 Copynumber: 3.7 Consensus size: 49
75780153 TAGCCAAAGC
* * * * *
75780163 TATCTAGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACCAAT
1 TATCGAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
75780212 TATCCAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCGAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * *
75780262 CATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATC-GAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
*
75780313 TATCGAGTACGCATAGTAGCCTGCACTTAGTACT
1 TATCGAGTACACATAGTAGCCTGCACTTAGTACT
75780347 TAATATGTGA
Statistics
Matches: 116, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
49 41 0.35
50 45 0.39
51 30 0.26
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
TATCGAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:75787442 original size:37 final size:37
Alignment explanation
Indices: 75787401--75787503 Score: 143
Period size: 37 Copynumber: 2.8 Consensus size: 37
75787391 TTATGATGAC
* *
75787401 CCGCTAGACTTATCCTTATGTTCCAAGTTAAGACAGT
1 CCGCTGGACTTGTCCTTATGTTCCAAGTTAAGACAGT
* * *
75787438 CCGCTGGACTTGTCCTTATATTCCAAATTAAGATAGT
1 CCGCTGGACTTGTCCTTATGTTCCAAGTTAAGACAGT
* *
75787475 CCGCTGGACTTGTCCTCATGTACCAAGTT
1 CCGCTGGACTTGTCCTTATGTTCCAAGTT
75787504 TTGACGGTCC
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.33
Consensus pattern (37 bp):
CCGCTGGACTTGTCCTTATGTTCCAAGTTAAGACAGT
Found at i:75787514 original size:37 final size:37
Alignment explanation
Indices: 75787401--75787532 Score: 138
Period size: 37 Copynumber: 3.6 Consensus size: 37
75787391 TTATGATGAC
* * *
75787401 CCGCTAGACTTATCCTTATGTTCCAAGTTAAGACAGT
1 CCGCTGGACTTGTCCTCATGTTCCAAGTTAAGACAGT
* * * *
75787438 CCGCTGGACTTGTCCTTATATTCCAAATTAAGATAGT
1 CCGCTGGACTTGTCCTCATGTTCCAAGTTAAGACAGT
* ** *
75787475 CCGCTGGACTTGTCCTCATGTACCAAGTTTTGACGGT
1 CCGCTGGACTTGTCCTCATGTTCCAAGTTAAGACAGT
* * *
75787512 CCGTTGGATTTTTCCTCATGT
1 CCGCTGGACTTGTCCTCATGT
75787533 CTCAAGTCAT
Statistics
Matches: 79, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 79 1.00
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (37 bp):
CCGCTGGACTTGTCCTCATGTTCCAAGTTAAGACAGT
Found at i:75794236 original size:40 final size:40
Alignment explanation
Indices: 75794192--75794300 Score: 200
Period size: 40 Copynumber: 2.7 Consensus size: 40
75794182 GCTACTTGCT
75794192 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
75794232 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
75794272 CAAATGCCTTCGGGACTTAGCCAGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
75794301 CATCCGAATA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:75802266 original size:40 final size:41
Alignment explanation
Indices: 75802222--75802370 Score: 234
Period size: 40 Copynumber: 3.7 Consensus size: 41
75802212 GCTACTTGCT
75802222 CAAATGCCTTCGGGACTTAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
75802262 CAAATGCCTTCGGGACTTAGCCCGGA-TATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
* * *
75802302 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
*
75802342 CAAATGCCTTCAGGACTTAGCCCGG-TTAT
1 CAAATGCCTTCGGGACTTAGCCCGGATTAT
75802371 CATCCGAATA
Statistics
Matches: 102, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
39 1 0.01
40 98 0.96
41 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
Found at i:75802321 original size:80 final size:80
Alignment explanation
Indices: 75802199--75802366 Score: 243
Period size: 80 Copynumber: 2.1 Consensus size: 80
75802189 CCTTCGCAAT
* * * *
75802199 TTAG-CCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCC-GATTATAGTAACTCGCA
1 TTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTAGCA
*
75802262 CAAATGCCTTCGGGAC
65 CAAATGCCTTCAGGAC
*
75802278 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
1 TTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCA
75802342 CAAATGCCTTCAGGAC
65 CAAATGCCTTCAGGAC
75802358 TTAGCCCGG
1 TTAGCCCGG
75802367 TTATCATCCG
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
79 5 0.06
80 72 0.90
81 3 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCAC
AAATGCCTTCAGGAC
Found at i:75806259 original size:33 final size:33
Alignment explanation
Indices: 75806212--75806283 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
75806202 GCCTTATTAC
75806212 ATAAATTAAAACCCAAAACGAAATCTAATAGCA
1 ATAAATTAAAACCCAAAACGAAATCTAATAGCA
* *
75806245 ATAAGTTAAAACCCAAAATGAAATCTAATAGCAA
1 ATAAATTAAAACCCAAAACGAAATCTAATAGC-A
75806279 ATAAA
1 ATAAA
75806284 AGAAACAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
33 30 0.86
34 5 0.14
ACGTcount: A:0.58, C:0.15, G:0.07, T:0.19
Consensus pattern (33 bp):
ATAAATTAAAACCCAAAACGAAATCTAATAGCA
Found at i:75807259 original size:8 final size:8
Alignment explanation
Indices: 75807243--75807285 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
75807233 AAGGCCGCTC
75807243 TTTCGGCT
1 TTTCGGCT
*
75807251 TTTCAGCT
1 TTTCGGCT
75807259 TTTCGGCT
1 TTTCGGCT
*
75807267 TTTTGGCT
1 TTTCGGCT
*
75807275 TTTCAGCT
1 TTTCGGCT
75807283 TTT
1 TTT
75807286 GTCGTTCTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.05, C:0.21, G:0.19, T:0.56
Consensus pattern (8 bp):
TTTCGGCT
Found at i:75810481 original size:46 final size:46
Alignment explanation
Indices: 75810417--75810505 Score: 151
Period size: 46 Copynumber: 1.9 Consensus size: 46
75810407 TGACATTGGG
* * *
75810417 TGATATGCGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT
1 TGATATGAGAGCTAGTGTAAGACATATCTGGGACATGCATCGGCAT
75810463 TGATATGAGAGCTAGTGTAAGACATATCTGGGACATGCATCGG
1 TGATATGAGAGCTAGTGTAAGACATATCTGGGACATGCATCGG
75810506 TCTCTAGATA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (46 bp):
TGATATGAGAGCTAGTGTAAGACATATCTGGGACATGCATCGGCAT
Found at i:75810545 original size:48 final size:46
Alignment explanation
Indices: 75810427--75810552 Score: 148
Period size: 46 Copynumber: 2.7 Consensus size: 46
75810417 TGATATGCGT
*
75810427 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGATATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGATATGAAA
*
75810473 GCTAGTGTAAGACATATCTGGGACATGCATCGGTC-TCTAGATAT-ACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CAT-T-GATATGA-AA
* * *
75810521 GCTAGTGTAATACCTGTCTAGGACATGGCATC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATC
75810553 AGCTTGTTAT
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
46 33 0.48
47 3 0.04
48 28 0.41
49 5 0.07
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGATATGAAA
Found at i:75812430 original size:26 final size:26
Alignment explanation
Indices: 75812362--75812421 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
75812352 TCTCATCAAA
*
75812362 ATTTTA-CTCTAATAAAATTTTGACG
1 ATTTTACCCCTAATAAAATTTTGACG
*
75812387 ATTTTACCCCTAATAAAATTTTGATG
1 ATTTTACCCCTAATAAAATTTTGACG
75812413 ATTTTACCC
1 ATTTTACCC
75812422 TCGGTAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 6 0.19
26 26 0.81
ACGTcount: A:0.33, C:0.17, G:0.07, T:0.43
Consensus pattern (26 bp):
ATTTTACCCCTAATAAAATTTTGACG
Found at i:75817398 original size:70 final size:70
Alignment explanation
Indices: 75817311--75817450 Score: 280
Period size: 70 Copynumber: 2.0 Consensus size: 70
75817301 AATCCTAGAT
75817311 ATTTAACCATCTTTTCTTAATTAGACTTAGTATTTTGCTTCTTTTCAAATCCTATTAGAATTTTA
1 ATTTAACCATCTTTTCTTAATTAGACTTAGTATTTTGCTTCTTTTCAAATCCTATTAGAATTTTA
75817376 CCTTC
66 CCTTC
75817381 ATTTAACCATCTTTTCTTAATTAGACTTAGTATTTTGCTTCTTTTCAAATCCTATTAGAATTTTA
1 ATTTAACCATCTTTTCTTAATTAGACTTAGTATTTTGCTTCTTTTCAAATCCTATTAGAATTTTA
75817446 CCTTC
66 CCTTC
75817451 TTCTCCTTAT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.50
Consensus pattern (70 bp):
ATTTAACCATCTTTTCTTAATTAGACTTAGTATTTTGCTTCTTTTCAAATCCTATTAGAATTTTA
CCTTC
Found at i:75819515 original size:26 final size:26
Alignment explanation
Indices: 75819486--75819567 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
75819476 TGGTACAAAT
75819486 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
75819512 TGATAATGGATTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
75819538 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75819564 TGAT
1 TGAT
75819568 GGGCATTTCA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:75825951 original size:46 final size:46
Alignment explanation
Indices: 75825777--75825958 Score: 249
Period size: 46 Copynumber: 4.0 Consensus size: 46
75825767 TTTGACGTGA
* * * * *
75825777 TGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * *
75825823 TGCCACGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
75825869 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
75825915 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
75825959 AGAGCACACT
Statistics
Matches: 123, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.03
46 119 0.97
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:75828048 original size:11 final size:11
Alignment explanation
Indices: 75828032--75828079 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
75828022 CTTTATATAC
75828032 TAATAAAATAA
1 TAATAAAATAA
*
75828043 TAATAAAATATTT
1 TAATAAAATA--A
* *
75828056 TATTAAAATAT
1 TAATAAAATAA
75828067 TAATAAAATAA
1 TAATAAAATAA
75828078 TA
1 TA
75828080 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:75828945 original size:126 final size:127
Alignment explanation
Indices: 75828706--75828968 Score: 330
Period size: 126 Copynumber: 2.1 Consensus size: 127
75828696 ACTTTTGGGC
* *
75828706 CGACACTTTTCCTAAGTGTTGGGATAGACTTGTTGATATACACTTTGGCCAACCCTTTATATAAG
1 CGACACTTTTCCTAAGTGTTGGGATAGACTTGTCGACATACACTTTGGCCAACCCTTTATATAAG
** * * *
75828771 AGTTGGGATATACATACCTAAAACAACGTTTATATAAGAGTCATCTTTGTTCAACACTATGT
66 AGTTGGGATATACATACCTAAAACAACACTTAAATAAGAGTCAGCTTTGTCCAACACTATGT
* * ** * *
75828833 CGACACTTTT-CTAAGTGTTGGGGTAGACTTGTCGGCATACGTTTTGGCCAACTCTTTGTATAAG
1 CGACACTTTTCCTAAGTGTTGGGATAGACTTGTCGACATACACTTTGGCCAACCCTTTATATAAG
* ** * * * * *
75828897 AGTTGGTATATGTATGCCTAAGACAATACTTAAATAAGAGTCGGCTTTGTCCAATACTATGT
66 AGTTGGGATATACATACCTAAAACAACACTTAAATAAGAGTCAGCTTTGTCCAACACTATGT
75828959 CGACACTTTT
1 CGACACTTTT
75828969 ACGCTAACAC
Statistics
Matches: 115, Mismatches: 21, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
126 105 0.91
127 10 0.09
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (127 bp):
CGACACTTTTCCTAAGTGTTGGGATAGACTTGTCGACATACACTTTGGCCAACCCTTTATATAAG
AGTTGGGATATACATACCTAAAACAACACTTAAATAAGAGTCAGCTTTGTCCAACACTATGT
Found at i:75829087 original size:140 final size:140
Alignment explanation
Indices: 75828835--75829097 Score: 357
Period size: 140 Copynumber: 1.9 Consensus size: 140
75828825 CACTATGTCG
* * * * *
75828835 ACACTTTTCTAAGTGTTGGGGTAGACTTGTCGGCATACGTTTTGGCCAACTCTTTGTATAAGAGT
1 ACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATACGCTTTGGCCAACTCTTTGTATAAGAGT
* * * * * * *
75828900 TGGTATATGTATGCCTAAGACAATACTTAAATAAGAGTCGGCTTTGTCCAATACTATGTCGACAC
66 CGGGATATGCATGCCTAAGACAACACTAAAATAAGAGTCAGCTTTGTCCAACACTATGTCGACAC
75828965 TTTTACGCTA
131 TTTTACGCTA
* *
75828975 ACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATATGCTTTGGCCAACTTTTTGTATAAG-GA
1 ACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATACGCTTTGGCCAACTCTTTGTATAAGAG-
* * *
75829039 TCGGGATATGCATGCCTAAGGCAACGCTAAAATAAGAGTCAGTTTTGTCCAACACTATG
65 TCGGGATATGCATGCCTAAGACAACACTAAAATAAGAGTCAGCTTTGTCCAACACTATG
75829098 CCAACTTGTG
Statistics
Matches: 105, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
139 1 0.01
140 104 0.99
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (140 bp):
ACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATACGCTTTGGCCAACTCTTTGTATAAGAGT
CGGGATATGCATGCCTAAGACAACACTAAAATAAGAGTCAGCTTTGTCCAACACTATGTCGACAC
TTTTACGCTA
Found at i:75830056 original size:14 final size:14
Alignment explanation
Indices: 75830039--75830087 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
75830029 ATCTAAATAA
75830039 TTTAGTGTTTAAGG
1 TTTAGTGTTTAAGG
75830053 TTTA-TGATTTAAGG
1 TTTAGTG-TTTAAGG
* * *
75830067 TTTATTGTTTATGA
1 TTTAGTGTTTAAGG
75830081 TTTAGTG
1 TTTAGTG
75830088 ATTATGATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
13 2 0.07
14 26 0.87
15 2 0.07
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.55
Consensus pattern (14 bp):
TTTAGTGTTTAAGG
Found at i:75830092 original size:21 final size:21
Alignment explanation
Indices: 75830038--75830099 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
75830028 TATCTAAATA
*
75830038 ATTTAGTGTTTAAGGTTTATG
1 ATTTAGTGTTTATGGTTTATG
*
75830059 ATTTAAG-GTTTATTGTTTATG
1 ATTT-AGTGTTTATGGTTTATG
* *
75830080 ATTTAGTGATTATGATTTAT
1 ATTTAGTGTTTATGGTTTAT
75830100 AGTTTAGGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 2 0.06
21 30 0.88
22 2 0.06
ACGTcount: A:0.26, C:0.00, G:0.19, T:0.55
Consensus pattern (21 bp):
ATTTAGTGTTTATGGTTTATG
Found at i:75831647 original size:15 final size:15
Alignment explanation
Indices: 75831627--75831655 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
75831617 GTGATTAAAA
75831627 TGTAAGTATTTATGC
1 TGTAAGTATTTATGC
75831642 TGTAAGTATTTATG
1 TGTAAGTATTTATG
75831656 TTCGCTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.48
Consensus pattern (15 bp):
TGTAAGTATTTATGC
Found at i:75834003 original size:16 final size:16
Alignment explanation
Indices: 75833984--75834014 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75833974 AAACAGAGTA
*
75833984 TTTTTTTAACAGTTTG
1 TTTTTATAACAGTTTG
75834000 TTTTTATAACAGTTT
1 TTTTTATAACAGTTT
75834015 ATTGATTTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.06, G:0.10, T:0.61
Consensus pattern (16 bp):
TTTTTATAACAGTTTG
Found at i:75834935 original size:36 final size:36
Alignment explanation
Indices: 75834854--75835007 Score: 125
Period size: 36 Copynumber: 4.2 Consensus size: 36
75834844 AAAAGTATAT
* * * * **
75834854 AACCTTTTTAAGGGTTGCCTTAGACAAGGTCTATCTT
1 AACCTTTTTTAGAGTTGTCTTAGAC-GGGTCTATCCC
* *
75834891 AGCC-TTTTTAGAGTTGTTTTAGACGGGTCTATCCC
1 AACCTTTTTTAGAGTTGTCTTAGACGGGTCTATCCC
* ** *
75834926 AACCTTTTTTAAGGGTTGTCTTAGACAAAGTTTATCCC
1 AACCTTTTTT-AGAGTTGTCTTAGAC-GGGTCTATCCC
* *
75834964 AA-CTTTTTTA-AGATTGTCTTAAACGGATCTATCCC
1 AACCTTTTTTAGAG-TTGTCTTAGACGGGTCTATCCC
75834999 AACCTTTTT
1 AACCTTTTT
75835008 CAAAATCACA
Statistics
Matches: 92, Mismatches: 20, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
35 21 0.23
36 38 0.41
37 23 0.25
38 10 0.11
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.40
Consensus pattern (36 bp):
AACCTTTTTTAGAGTTGTCTTAGACGGGTCTATCCC
Found at i:75834949 original size:73 final size:73
Alignment explanation
Indices: 75834854--75835007 Score: 195
Period size: 73 Copynumber: 2.1 Consensus size: 73
75834844 AAAAGTATAT
* ** * * *
75834854 AACC-TTTTTAAGGGTTGCCTTAGACAAGGTCTATCTTAGCCTTTTT-AGAGTTGTTTTAGACGG
1 AACCTTTTTTAAGGGTTGCCTTAGACAAAGTCTATCCCAACCTTTTTAAGA-TTGTCTTAAACGG
*
75834917 GTCTATCCC
65 ATCTATCCC
* * *
75834926 AACCTTTTTTAAGGGTTGTCTTAGACAAAGTTTATCCCAACTTTTTTAAGATTGTCTTAAACGGA
1 AACCTTTTTTAAGGGTTGCCTTAGACAAAGTCTATCCCAACCTTTTTAAGATTGTCTTAAACGGA
75834991 TCTATCCC
66 TCTATCCC
75834999 AACCTTTTT
1 AACCTTTTT
75835008 CAAAATCACA
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
72 4 0.06
73 63 0.90
74 3 0.04
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.40
Consensus pattern (73 bp):
AACCTTTTTTAAGGGTTGCCTTAGACAAAGTCTATCCCAACCTTTTTAAGATTGTCTTAAACGGA
TCTATCCC
Found at i:75834970 original size:37 final size:37
Alignment explanation
Indices: 75834814--75835007 Score: 132
Period size: 37 Copynumber: 5.4 Consensus size: 37
75834804 TGGACGGGTT
* * * * *
75834814 TATCCTAACTTTTTTAAAGGTTGTTTTAGAAAAAGTA
1 TATCCCAACTTTTTTAAGGGTTGTCTTAGACAAAGTC
* * *
75834851 TAT---AACCTTTTTAAGGGTTGCCTTAGACAAGGTC
1 TATCCCAACTTTTTTAAGGGTTGTCTTAGACAAAGTC
** * * * * **
75834885 TATCTTAGCCTTTTT-AGAGTTGTTTTAGAC-GGGTC
1 TATCCCAACTTTTTTAAGGGTTGTCTTAGACAAAGTC
*
75834920 TATCCCAACCTTTTTTAAGGGTTGTCTTAGACAAAGTT
1 TATCCCAA-CTTTTTTAAGGGTTGTCTTAGACAAAGTC
* * **
75834958 TATCCCAACTTTTTTAA-GATTGTCTTAAACGGA-TC
1 TATCCCAACTTTTTTAAGGGTTGTCTTAGACAAAGTC
*
75834993 TATCCCAACCTTTTT
1 TATCCCAACTTTTTT
75835008 CAAAATCACA
Statistics
Matches: 124, Mismatches: 27, Indels: 14
0.75 0.16 0.08
Matches are distributed among these distances:
34 27 0.22
35 24 0.19
36 30 0.24
37 33 0.27
38 10 0.08
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.41
Consensus pattern (37 bp):
TATCCCAACTTTTTTAAGGGTTGTCTTAGACAAAGTC
Found at i:75835096 original size:38 final size:38
Alignment explanation
Indices: 75835012--75835084 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 38
75835002 CTTTTTCAAA
* * * *
75835012 ATCACAACCTTTTTCAAAGGTTGGCCTTGATTAGGTCT
1 ATCACAACCTTTTTCAAAGGTCGGCATTGACTAAGTCT
*
75835050 ATCACAACCTTTTTTAAAGGTCGGCATTGACTAAG
1 ATCACAACCTTTTTCAAAGGTCGGCATTGACTAAG
75835085 CATTTCACAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 30 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (38 bp):
ATCACAACCTTTTTCAAAGGTCGGCATTGACTAAGTCT
Found at i:75835380 original size:29 final size:29
Alignment explanation
Indices: 75835357--75835426 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 29
75835347 AAAAAAGTAT
75835357 TAAGAATTATTTAAACATTTAAAAAGATTA
1 TAAGAATTATTTAAA-ATTTAAAAAGATTA
* *
75835387 TAATAATTATTTAAATTTTAAAAATGA-TA
1 TAAGAATTATTTAAAATTTAAAAA-GATTA
*
75835416 -AAAAATTATTT
1 TAAGAATTATTT
75835427 TTTTAATTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 10 0.28
29 10 0.28
30 16 0.44
ACGTcount: A:0.53, C:0.01, G:0.04, T:0.41
Consensus pattern (29 bp):
TAAGAATTATTTAAAATTTAAAAAGATTA
Found at i:75835381 original size:30 final size:29
Alignment explanation
Indices: 75835332--75835426 Score: 79
Period size: 30 Copynumber: 3.3 Consensus size: 29
75835322 TAATTAATTA
** *
75835332 AATT-TTTAAAAAATAAAAAAAGTATTAAG
1 AATTATTTAAAATTTAAAAAGAGTA-TAAG
* *
75835361 AATTATTTAAACATTTAAAAAGATTATAAT
1 AATTATTTAAA-ATTTAAAAAGAGTATAAG
* *
75835391 AATTATTTAAATTTTAAAAATGA-TA-AAA
1 AATTATTTAAAATTTAAAAA-GAGTATAAG
75835419 AATTATTT
1 AATTATTT
75835427 TTTTAATTTA
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
28 10 0.18
29 14 0.25
30 22 0.39
31 10 0.18
ACGTcount: A:0.56, C:0.01, G:0.04, T:0.39
Consensus pattern (29 bp):
AATTATTTAAAATTTAAAAAGAGTATAAG
Found at i:75838389 original size:16 final size:17
Alignment explanation
Indices: 75838370--75838405 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
75838360 TGAATGAAAT
75838370 AAAATA-TTTTATGTTA
1 AAAATATTTTTATGTTA
*
75838386 AAAATATTTTTATTTTA
1 AAAATATTTTTATGTTA
75838403 AAA
1 AAA
75838406 TTTATTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
AAAATATTTTTATGTTA
Found at i:75838406 original size:16 final size:16
Alignment explanation
Indices: 75838369--75838406 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
75838359 ATGAATGAAA
75838369 TAAAATATTTTATGTT
1 TAAAATATTTTATGTT
*
75838385 AAAAATATTTTTAT-TT
1 TAAAATA-TTTTATGTT
75838401 TAAAAT
1 TAAAAT
75838407 TTATTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TAAAATATTTTATGTT
Found at i:75838786 original size:20 final size:19
Alignment explanation
Indices: 75838749--75838788 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
75838739 AAAATTTTTA
* *
75838749 AAAATTTTTAATTTAATTT
1 AAAATTTTTAAATAAATTT
75838768 AAAATTTTTAAAATAAATTT
1 AAAATTTTT-AAATAAATTT
75838788 A
1 A
75838789 CTATAATAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
AAAATTTTTAAATAAATTT
Found at i:75842220 original size:5 final size:5
Alignment explanation
Indices: 75842210--75842239 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
75842200 TGAGTTAAAG
75842210 TATGT TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT TATGT
75842240 GATAAATTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (5 bp):
TATGT
Found at i:75845815 original size:43 final size:41
Alignment explanation
Indices: 75845767--75845863 Score: 113
Period size: 43 Copynumber: 2.3 Consensus size: 41
75845757 TCCCGGATAT
*
75845767 GGTCTTACATGCTATCACATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACATGCTATCAC-T-TCGATGCCAATGTCCCAGACAG
** * *
75845810 GGTCTTACACATTTTCTCACTTCGATGCCAATGTCCCAGACAT
1 GGTCTT--ACATGCTATCACTTCGATGCCAATGTCCCAGACAG
75845853 GGTCTTACATG
1 GGTCTTACATG
75845864 AATCACACAT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
41 4 0.09
43 32 0.70
44 1 0.02
45 9 0.20
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.30
Consensus pattern (41 bp):
GGTCTTACATGCTATCACTTCGATGCCAATGTCCCAGACAG
Found at i:75859256 original size:21 final size:21
Alignment explanation
Indices: 75859215--75859270 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
75859205 GCATATTTTG
*
75859215 TCATTATTATTATTCTTTTTA
1 TCATTATTATTATTCTCTTTA
75859236 TCATTATTATTA-TCTACTTTA
1 TCATTATTATTATTCT-CTTTA
*
75859257 TTATTTATT-TTATT
1 TCA-TTATTATTATT
75859271 TTTCTTTCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
20 3 0.10
21 21 0.70
22 6 0.20
ACGTcount: A:0.25, C:0.09, G:0.00, T:0.66
Consensus pattern (21 bp):
TCATTATTATTATTCTCTTTA
Found at i:75860936 original size:30 final size:30
Alignment explanation
Indices: 75860900--75860960 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
75860890 GAAAATTAAG
75860900 CTGACTTAGGCAAATATAAAGCAAACCAAT
1 CTGACTTAGGCAAATATAAAGCAAACCAAT
75860930 CTGACTTAGGCAAATATAAAGCAAACCAAT
1 CTGACTTAGGCAAATATAAAGCAAACCAAT
75860960 C
1 C
75860961 ACCCAAGGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.46, C:0.21, G:0.13, T:0.20
Consensus pattern (30 bp):
CTGACTTAGGCAAATATAAAGCAAACCAAT
Found at i:75867279 original size:26 final size:26
Alignment explanation
Indices: 75867242--75867292 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
75867232 ACTTTATGAT
* * *
75867242 TTCATGCGTGTATAAATATAAACCAC
1 TTCATGCATGTAAAAAGATAAACCAC
75867268 TTCATGCATGTAAAAAGATAAACCA
1 TTCATGCATGTAAAAAGATAAACCA
75867293 AACTTCAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (26 bp):
TTCATGCATGTAAAAAGATAAACCAC
Found at i:75869115 original size:6 final size:6
Alignment explanation
Indices: 75869106--75869133 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
75869096 TGGTTTCAAC
75869106 AAAATA AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAA
75869134 AACTCAACGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:75869730 original size:13 final size:12
Alignment explanation
Indices: 75869700--75869743 Score: 56
Period size: 13 Copynumber: 3.8 Consensus size: 12
75869690 TATTCCTAGA
75869700 AAAATA-ATTAT
1 AAAATATATTAT
75869711 AAAATATATCTAT
1 AAAATATAT-TAT
*
75869724 AATATATATTAT
1 AAAATATATTAT
75869736 AAAA-ATAT
1 AAAATATAT
75869744 GAGTTTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 10 0.34
12 8 0.28
13 11 0.38
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (12 bp):
AAAATATATTAT
Found at i:75870130 original size:15 final size:15
Alignment explanation
Indices: 75870110--75870139 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
75870100 ACGTGGAAGA
75870110 TATAAATTAATAAAT
1 TATAAATTAATAAAT
75870125 TATAAATTAATAAAT
1 TATAAATTAATAAAT
75870140 ATTTTTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
TATAAATTAATAAAT
Found at i:75870131 original size:7 final size:8
Alignment explanation
Indices: 75870111--75870139 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
75870101 CGTGGAAGAT
75870111 ATAAATTA
1 ATAAATTA
75870119 ATAAATT-
1 ATAAATTA
75870126 ATAAATTA
1 ATAAATTA
75870134 ATAAAT
1 ATAAAT
75870140 ATTTTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATAAATTA
Found at i:75873248 original size:15 final size:15
Alignment explanation
Indices: 75873208--75873250 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
75873198 TATTATTGCT
**
75873208 ATTATTATCATTATC
1 ATTATTATTTTTATC
75873223 ATTATTATTTTTATC
1 ATTATTATTTTTATC
*
75873238 ATTATTCTTTTTA
1 ATTATTATTTTTA
75873251 ACTGTTTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTATC
Found at i:75873394 original size:21 final size:21
Alignment explanation
Indices: 75873324--75873402 Score: 61
Period size: 22 Copynumber: 3.5 Consensus size: 21
75873314 CTCTTTTAGT
75873324 TTTTATTTGTTTATTTAT-TTA
1 TTTTATTT-TTTATTTATCTTA
** *
75873345 TTATTGCTTTTTATTTAATTGGCTCA
1 TT-TTATTTTTTATTT-A-T--CTTA
75873371 TTTTATTTTTTATTTATCTTA
1 TTTTATTTTTTATTTATCTTA
75873392 TTTTTATTTTT
1 -TTTTATTTTT
75873403 GCCCTTATCA
Statistics
Matches: 45, Mismatches: 6, Indels: 13
0.70 0.09 0.20
Matches are distributed among these distances:
21 12 0.27
22 15 0.33
23 2 0.04
24 1 0.02
25 11 0.24
26 4 0.09
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.72
Consensus pattern (21 bp):
TTTTATTTTTTATTTATCTTA
Found at i:75877652 original size:22 final size:22
Alignment explanation
Indices: 75877624--75877746 Score: 124
Period size: 22 Copynumber: 5.5 Consensus size: 22
75877614 GAGTTATGGT
75877624 CAGTAAGCTC-ATTCGAGCTGAA
1 CAGTAAGCTCTATT-GAGCTGAA
75877646 CAGTAAGCTCTATTGAGCTGAA
1 CAGTAAGCTCTATTGAGCTGAA
* * *
75877668 -ATGGTAAGCCCTAATGAGCTTAA
1 CA--GTAAGCTCTATTGAGCTGAA
*
75877691 CAGTATGCTCTATTGAGCTGAA
1 CAGTAAGCTCTATTGAGCTGAA
* * * *
75877713 CGGTAAGCTCTAATAAGCTACAA
1 CAGTAAGCTCTATTGAGCT-GAA
75877736 CAGTAAGCTCT
1 CAGTAAGCTCT
75877747 TACGAGCTAT
Statistics
Matches: 83, Mismatches: 13, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
21 1 0.01
22 49 0.59
23 32 0.39
24 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (22 bp):
CAGTAAGCTCTATTGAGCTGAA
Found at i:75877754 original size:45 final size:45
Alignment explanation
Indices: 75877639--75877746 Score: 146
Period size: 45 Copynumber: 2.4 Consensus size: 45
75877629 AGCTCATTCG
* * *
75877639 AGCTGAACAGTAAGCTCTATTGAGCTGAAATGGTAAGCCCTAATG
1 AGCTCAACAGTAAGCTCTATTGAGCTGAAACGGTAAGCCCTAATA
* * *
75877684 AGCTTAACAGTATGCTCTATTGAGCTG-AACGGTAAGCTCTAATA
1 AGCTCAACAGTAAGCTCTATTGAGCTGAAACGGTAAGCCCTAATA
75877728 AGCTACAACAGTAAGCTCT
1 AGCT-CAACAGTAAGCTCT
75877747 TACGAGCTAT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 18 0.33
45 37 0.67
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.26
Consensus pattern (45 bp):
AGCTCAACAGTAAGCTCTATTGAGCTGAAACGGTAAGCCCTAATA
Found at i:75877754 original size:67 final size:67
Alignment explanation
Indices: 75877624--75877754 Score: 149
Period size: 67 Copynumber: 2.0 Consensus size: 67
75877614 GAGTTATGGT
* * ** *
75877624 CAGTAAGCTCATTCGAGCTGAACAGTAAGCTCTATTGAGCTGAAATGGTAAGCCCTAATGAGCTT
1 CAGTAAGCTCATTCGAGCTGAACAGTAAGCTCTAATAAGCTGAAACAGTAAGCCCTAACGAGCTT
75877689 AA
66 AA
* * * *
75877691 CAGTATGCTCTATT-GAGCTGAACGGTAAGCTCTAATAAGCT-ACAACAGTAAGCTCTTACGAGC
1 CAGTAAGCTC-ATTCGAGCTGAACAGTAAGCTCTAATAAGCTGA-AACAGTAAGCCCTAACGAGC
75877754 T
64 T
75877755 ATGGTGAGTC
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
66 1 0.02
67 49 0.92
68 3 0.06
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (67 bp):
CAGTAAGCTCATTCGAGCTGAACAGTAAGCTCTAATAAGCTGAAACAGTAAGCCCTAACGAGCTT
AA
Found at i:75887302 original size:25 final size:26
Alignment explanation
Indices: 75887263--75887312 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
75887253 TCTTTTTCTT
75887263 TTTATTTATTCTTATTCTTATTTTTA
1 TTTATTTATTCTTATTCTTATTTTTA
75887289 TTTATTTATT-TTATTCTTATTTTT
1 TTTATTTATTCTTATTCTTATTTTT
75887313 CTTTTGATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (26 bp):
TTTATTTATTCTTATTCTTATTTTTA
Found at i:75894479 original size:22 final size:22
Alignment explanation
Indices: 75894454--75894547 Score: 89
Period size: 22 Copynumber: 4.2 Consensus size: 22
75894444 CTCATTCAAA
* * *
75894454 CTGAATAGTAAGCACTATTGAG
1 CTGAACAGTAAGCTCTAATGAG
* *
75894476 CTGAAACGGTATGCTCTAATGAG
1 CTG-AACAGTAAGCTCTAATGAG
* * *
75894499 CTGAACGGTAAGCTCTATTAAG
1 CTGAACAGTAAGCTCTAATGAG
* *
75894521 CTGAACGGTAAGCTCCAATGAG
1 CTGAACAGTAAGCTCTAATGAG
75894543 CTGAA
1 CTGAA
75894548 ATAGTAAGTT
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
22 43 0.72
23 17 0.28
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.24
Consensus pattern (22 bp):
CTGAACAGTAAGCTCTAATGAG
Found at i:75894543 original size:44 final size:45
Alignment explanation
Indices: 75894461--75894547 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 45
75894451 AAACTGAATA
* * *
75894461 GTAAGCACTATTGAGCTGAAACGGTATGCTCTAATGAGCTGAACG
1 GTAAGCACTATTAAGCTGAAACGGTAAGCTCCAATGAGCTGAACG
*
75894506 GTAAGCTCTATTAAGCTG-AACGGTAAGCTCCAATGAGCTGAA
1 GTAAGCACTATTAAGCTGAAACGGTAAGCTCCAATGAGCTGAA
75894548 ATAGTAAGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
44 22 0.58
45 16 0.42
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.24
Consensus pattern (45 bp):
GTAAGCACTATTAAGCTGAAACGGTAAGCTCCAATGAGCTGAACG
Found at i:75894555 original size:45 final size:45
Alignment explanation
Indices: 75894454--75894555 Score: 134
Period size: 45 Copynumber: 2.3 Consensus size: 45
75894444 CTCATTCAAA
* * *
75894454 CTGAATAGTAAGCACTATTGAGCTGAAACGGTATGCTCTAATGAG
1 CTGAATAGTAAGCACTATTAAGCTGAAACGGTAAGCTCCAATGAG
** *
75894499 CTGAACGGTAAGCTCTATTAAGCTG-AACGGTAAGCTCCAATGAG
1 CTGAATAGTAAGCACTATTAAGCTGAAACGGTAAGCTCCAATGAG
75894543 CTGAAATAGTAAG
1 CTG-AATAGTAAG
75894556 TTCTTACAAG
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 20 0.42
45 28 0.58
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (45 bp):
CTGAATAGTAAGCACTATTAAGCTGAAACGGTAAGCTCCAATGAG
Found at i:75903557 original size:96 final size:96
Alignment explanation
Indices: 75903282--75903558 Score: 261
Period size: 96 Copynumber: 2.8 Consensus size: 96
75903272 GTTGCAAGTG
* * * * *
75903282 TTATCTCCCTGAAGTTGCAGTGGAGTAGATAGAAGATAGCAAATTTTATCTCTCTAAAGTTGTAG
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGATAAC-AATCTTATCTCCCTAAAGTTGCAG
* * *
75903347 TAAAAAGCAAATTGAAGCTACAAGATAGCAAGTC
65 T--AGAGCAAATTAAAGCTACAAGATAGCAAATC
* * **** * * *
75903381 TTATCTCCTTGAAGTTGCAGTGGAGCAGA-CTGAAGATTGTGGATCTTATTTTCCTAAAATTGCA
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATC-GAAGA-TAACAATCTTATCTCCCTAAAGTTGCA
* * * * * *
75903445 GTGGAACAAATCAAAGCTACGAGTTA-TAAATC
64 GTAGAGCAAATTAAAGCTACAAGATAGCAAATC
*
75903477 TTATCTCCCTGAAGTTGTAGTGGAGTAGATCGAAGATAACAACTCTTATCTCCCTAAAGTTGCAG
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGATAACAA-TCTTATCTCCCTAAAGTTGCAG
*
75903542 TAGAGCAGATTAAAGCT
65 TAGAGCAAATTAAAGCT
75903559 TTAAACCTTA
Statistics
Matches: 138, Mismatches: 36, Indels: 11
0.75 0.19 0.06
Matches are distributed among these distances:
95 2 0.01
96 67 0.49
97 18 0.13
99 50 0.36
100 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.30
Consensus pattern (96 bp):
TTATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGATAACAATCTTATCTCCCTAAAGTTGCAGT
AGAGCAAATTAAAGCTACAAGATAGCAAATC
Found at i:75903613 original size:44 final size:44
Alignment explanation
Indices: 75903472--75903626 Score: 127
Period size: 44 Copynumber: 3.5 Consensus size: 44
75903462 TACGAGTTAT
* ** * * *
75903472 AAATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATCGAAGA-TAAC
1 AAATCTTATCTCCCTGAAGTTGCAGTAAAGCAGAT-TAA-ACTTAC
* * * *
75903517 AACTCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCTT-T
1 AAATCTTATCTCCCTGAAGTTGCAGTAAAGCAGATTAAA-CTTAC
* * *
75903561 AAACCTTATCTCTCTGAAGTTGCAGTAAAGCAGCTT-AACATTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTAAAGCAGATTAAAC-TTAC
*
75903605 AAATCTTATTTCCCTGAAGTTG
1 AAATCTTATCTCCCTGAAGTTG
75903627 TAGTTGAGCA
Statistics
Matches: 88, Mismatches: 18, Indels: 9
0.77 0.16 0.08
Matches are distributed among these distances:
42 1 0.01
43 5 0.06
44 51 0.58
45 31 0.35
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (44 bp):
AAATCTTATCTCCCTGAAGTTGCAGTAAAGCAGATTAAACTTAC
Found at i:75903883 original size:44 final size:44
Alignment explanation
Indices: 75903819--75903948 Score: 143
Period size: 44 Copynumber: 3.0 Consensus size: 44
75903809 GCTACAAACC
* * * * * *
75903819 ACAAATCTTATCTTCCTAAAGTTGCAGTAAAGAAGATTGAAGAT
1 ACAAGTCTCATCTCCCTAAAGTTGCAGTGAAGCAGATCGAAGAT
* * * **
75903863 ACGAGTCTCATCTCCCTAAAGTTGCAGGGAAGCAGATGGAATCT
1 ACAAGTCTCATCTCCCTAAAGTTGCAGTGAAGCAGATCGAAGAT
* *
75903907 ACAAGTCTTATCTCTCTAAAGTTGCAGTGAAGCAGATCGAAG
1 ACAAGTCTCATCTCCCTAAAGTTGCAGTGAAGCAGATCGAAG
75903949 CAACAATTCC
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
44 70 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (44 bp):
ACAAGTCTCATCTCCCTAAAGTTGCAGTGAAGCAGATCGAAGAT
Found at i:75905419 original size:21 final size:21
Alignment explanation
Indices: 75905390--75905430 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
75905380 TTATAATATT
75905390 ATTACTATTATTATCATTATC
1 ATTACTATTATTATCATTATC
* *
75905411 ATTATTATTTTTATCATTAT
1 ATTACTATTATTATCATTAT
75905431 TCTTTTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTACTATTATTATCATTATC
Found at i:75905436 original size:15 final size:15
Alignment explanation
Indices: 75905396--75905438 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
75905386 TATTATTACT
**
75905396 ATTATTATCATTATC
1 ATTATTATTTTTATC
75905411 ATTATTATTTTTATC
1 ATTATTATTTTTATC
*
75905426 ATTATTCTTTTTA
1 ATTATTATTTTTA
75905439 ATTGTTTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTATC
Found at i:75907333 original size:8 final size:9
Alignment explanation
Indices: 75907320--75907363 Score: 51
Period size: 8 Copynumber: 5.3 Consensus size: 9
75907310 TTATTAGCTC
75907320 TTATTATT-
1 TTATTATTA
75907328 TTATTATTA
1 TTATTATTA
75907337 TT-TTATTA
1 TTATTATTA
75907345 TTATT-TT-
1 TTATTATTA
*
75907352 TTATAATTA
1 TTATTATTA
75907361 TTA
1 TTA
75907364 AGTATTTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
7 4 0.13
8 20 0.65
9 7 0.23
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (9 bp):
TTATTATTA
Found at i:75907334 original size:3 final size:3
Alignment explanation
Indices: 75907320--75907363 Score: 51
Period size: 3 Copynumber: 16.0 Consensus size: 3
75907310 TTATTAGCTC
*
75907320 TTA TTA TT- TTA TTA TTA TT- TTA TTA TTA TT- TT- TTA TAA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
75907364 AGTATTTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
2 8 0.22
3 28 0.78
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:75907336 original size:11 final size:11
Alignment explanation
Indices: 75907320--75907355 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
75907310 TTATTAGCTC
75907320 TTATTATTTTA
1 TTATTATTTTA
75907331 TTATTATTTTA
1 TTATTATTTTA
75907342 TTATTATTTT-
1 TTATTATTTTA
75907352 TTAT
1 TTAT
75907356 AATTATTAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 4 0.16
11 21 0.84
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:75907361 original size:19 final size:22
Alignment explanation
Indices: 75907320--75907372 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
75907310 TTATTAGCTC
*
75907320 TTATTATTTTATTATTATTTTA
1 TTATTATTTTATTATTATATTA
75907342 TTATTATTTT-TTA-TA-ATTA
1 TTATTATTTTATTATTATATTA
*
75907361 TTAAGTATTTTA
1 TT-ATTATTTTA
75907373 AGCTATTTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 5 0.19
20 9 0.33
21 3 0.11
22 10 0.37
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (22 bp):
TTATTATTTTATTATTATATTA
Found at i:75907578 original size:26 final size:26
Alignment explanation
Indices: 75907551--75907601 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 26
75907541 AGTTAATAAA
75907551 TTCTCTTTGAGTTTTCTTTT-GAAGAAT
1 TTCTC-TTGAG-TTTCTTTTAGAAGAAT
75907578 TTCTCTTGAGTTTCTTTTAGAAGA
1 TTCTCTTGAGTTTCTTTTAGAAGA
75907602 GTTTTAACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 8 0.35
26 10 0.43
27 5 0.22
ACGTcount: A:0.20, C:0.12, G:0.16, T:0.53
Consensus pattern (26 bp):
TTCTCTTGAGTTTCTTTTAGAAGAAT
Found at i:75908214 original size:10 final size:10
Alignment explanation
Indices: 75908189--75908233 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
75908179 TATTTCCCAC
75908189 AAAAAAATTG
1 AAAAAAATTG
75908199 ATAAAAAATTG
1 A-AAAAAATTG
*
75908210 AAAAAAATAG
1 AAAAAAATTG
*
75908220 AAAAACA-TG
1 AAAAAAATTG
75908229 AAAAA
1 AAAAA
75908234 TAAAAAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 6 0.19
10 15 0.48
11 10 0.32
ACGTcount: A:0.73, C:0.02, G:0.09, T:0.16
Consensus pattern (10 bp):
AAAAAAATTG
Done.