Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 23 of 344
Found at i:7935458 original size:15 final size:15
Alignment explanation
Indices: 7935438--7935466 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7935428 CCTTTCACCA
7935438 TTGTCTTCTACCTCT
1 TTGTCTTCTACCTCT
7935453 TTGTCTTCTACCTC
1 TTGTCTTCTACCTC
7935467 ACTTATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.34, G:0.07, T:0.52
Consensus pattern (15 bp):
TTGTCTTCTACCTCT
Found at i:7936540 original size:18 final size:18
Alignment explanation
Indices: 7936519--7936553 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7936509 TGGCATGGTG
*
7936519 GAAGGAGTTGGTCGTGTT
1 GAAGGAGCTGGTCGTGTT
*
7936537 GAAGGAGCTGGTGGTGT
1 GAAGGAGCTGGTCGTGT
7936554 CTGTAATAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.06, G:0.49, T:0.29
Consensus pattern (18 bp):
GAAGGAGCTGGTCGTGTT
Found at i:7937841 original size:30 final size:31
Alignment explanation
Indices: 7937792--7937855 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 31
7937782 ACTTATTTTA
*
7937792 TTGTTAATTTTTTTTATTATTTTAAAGACAT
1 TTGTTAATTTTTGTTATTATTTTAAAGACAT
* *
7937823 TTGTTAA-TTTTGTTATTATTTTAGAGACTT
1 TTGTTAATTTTTGTTATTATTTTAAAGACAT
7937853 TTG
1 TTG
7937856 CTTATTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 23 0.77
31 7 0.23
ACGTcount: A:0.25, C:0.03, G:0.11, T:0.61
Consensus pattern (31 bp):
TTGTTAATTTTTGTTATTATTTTAAAGACAT
Found at i:7938009 original size:12 final size:12
Alignment explanation
Indices: 7937979--7938011 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
7937969 TATATATTTT
7937979 AAAATT-ATATA
1 AAAATTAATATA
7937990 AAAA-TAATATA
1 AAAATTAATATA
7938001 AAAATTAATAT
1 AAAATTAATAT
7938012 GGGCGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:7939222 original size:3 final size:3
Alignment explanation
Indices: 7939214--7939238 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7939204 ATTAACATGT
7939214 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
7939239 AAGAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:7942362 original size:18 final size:18
Alignment explanation
Indices: 7942341--7942400 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
7942331 AATCGATTAA
*
7942341 TCAGTAATATTCATTTAT
1 TCAGTAATAGTCATTTAT
*
7942359 TCAGT-ATCAGTCGTTTAT
1 TCAGTAAT-AGTCATTTAT
* * *
7942377 TCTGTAAAAGTCAATTAT
1 TCAGTAATAGTCATTTAT
7942395 TCAGTA
1 TCAGTA
7942401 GCAGACAGTC
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
17 2 0.06
18 30 0.91
19 1 0.03
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.43
Consensus pattern (18 bp):
TCAGTAATAGTCATTTAT
Found at i:7946738 original size:3 final size:3
Alignment explanation
Indices: 7946730--7946755 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7946720 TAAAATAATG
7946730 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
7946756 TTTACACAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7953667 original size:19 final size:20
Alignment explanation
Indices: 7953643--7953681 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
7953633 TCTTATTTTT
7953643 TATTTGTTTTT-TGTTTTAA
1 TATTTGTTTTTATGTTTTAA
7953662 TATTTGTTTTTATGTTTTAA
1 TATTTGTTTTTATGTTTTAA
7953682 ATGTATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.18, C:0.00, G:0.10, T:0.72
Consensus pattern (20 bp):
TATTTGTTTTTATGTTTTAA
Found at i:7953699 original size:25 final size:23
Alignment explanation
Indices: 7953643--7953707 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 23
7953633 TCTTATTTTT
*
7953643 TATTTGTTTTT-TGTTTT-AA--
1 TATTTGTTTTTATATTTTAAATG
*
7953662 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
7953685 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
7953708 GTTTTTTATT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 11 0.28
20 6 0.15
21 2 0.05
23 6 0.15
24 3 0.08
25 11 0.28
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:7953957 original size:46 final size:47
Alignment explanation
Indices: 7953887--7954042 Score: 144
Period size: 46 Copynumber: 3.4 Consensus size: 47
7953877 TGCACACTTC
* *
7953887 TAGGTTAAACCTACACCAAT--TGGATAATAGTGCCTGGTCACCCGT
1 TAGGTTGAACCTACACAAATCATGGATAATAGTGCCTGGTCACCCGT
* ** * ** *
7953932 TAAGGTTGAATCTACATGAA-C-TGGATAATAGTGTCTAATCACCCAT
1 T-AGGTTGAACCTACACAAATCATGGATAATAGTGCCTGGTCACCCGT
*
7953978 TAGAGTTGAACCTACACAAATCAT--ATAATAATGCCTGGTCACCCGT
1 TAG-GTTGAACCTACACAAATCATGGATAATAGTGCCTGGTCACCCGT
*
7954024 TGGGGTTGAACCTACACAA
1 T-AGGTTGAACCTACACAA
7954043 CAAATAGCCT
Statistics
Matches: 88, Mismatches: 17, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
45 3 0.03
46 82 0.93
47 2 0.02
48 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (47 bp):
TAGGTTGAACCTACACAAATCATGGATAATAGTGCCTGGTCACCCGT
Found at i:7969446 original size:31 final size:31
Alignment explanation
Indices: 7969403--7969464 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
7969393 ACATTCTTGA
7969403 GGTTATTTCAGATTATTGATCACCAAAACTT
1 GGTTATTTCAGATTATTGATCACCAAAACTT
* * *
7969434 GGTTCTTTCAGATTCTTGATCATCAAAACTT
1 GGTTATTTCAGATTATTGATCACCAAAACTT
7969465 TTGTTATGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (31 bp):
GGTTATTTCAGATTATTGATCACCAAAACTT
Found at i:7970903 original size:27 final size:27
Alignment explanation
Indices: 7970873--7970932 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
7970863 CCAGGAAAGA
* * *
7970873 AAACATGGGGTAATTCGCCGAGACAGT
1 AAACACGGGGTAATTCGCCGAAACAAT
*
7970900 AAACACGGGGTAGTTCGCCGAAACAAT
1 AAACACGGGGTAATTCGCCGAAACAAT
7970927 AAACAC
1 AAACAC
7970933 AGGAGGTGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.22, G:0.25, T:0.15
Consensus pattern (27 bp):
AAACACGGGGTAATTCGCCGAAACAAT
Found at i:7973192 original size:16 final size:16
Alignment explanation
Indices: 7973173--7973208 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7973163 TATATAAATT
* *
7973173 AAACTGAAGATAATAA
1 AAACTGAAAACAATAA
7973189 AAACTGAAAACAATAA
1 AAACTGAAAACAATAA
7973205 AAAC
1 AAAC
7973209 ACTCGTCGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.67, C:0.11, G:0.08, T:0.14
Consensus pattern (16 bp):
AAACTGAAAACAATAA
Found at i:7974012 original size:30 final size:28
Alignment explanation
Indices: 7973967--7974029 Score: 81
Period size: 30 Copynumber: 2.2 Consensus size: 28
7973957 GAAAAAATAA
*
7973967 AAAAAATTATTAAATTATGAAGAAAATTTT
1 AAAAAATTATAAAATTAT--AGAAAATTTT
* *
7973997 AAAAAGTTATAAAATTATATAAAATTTT
1 AAAAAATTATAAAATTATAGAAAATTTT
7974025 AAAAA
1 AAAAA
7974030 TTCAAAAGGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 14 0.47
30 16 0.53
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (28 bp):
AAAAAATTATAAAATTATAGAAAATTTT
Found at i:7975592 original size:17 final size:19
Alignment explanation
Indices: 7975558--7975592 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7975548 GTTATTGTTA
7975558 TATATAAATAAGAGAAAAT
1 TATATAAATAAGAGAAAAT
7975577 TATATAAA-AAGA-AAAA
1 TATATAAATAAGAGAAAA
7975593 GAGATAAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 4 0.25
19 8 0.50
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.23
Consensus pattern (19 bp):
TATATAAATAAGAGAAAAT
Found at i:7978332 original size:43 final size:44
Alignment explanation
Indices: 7978245--7978333 Score: 128
Period size: 44 Copynumber: 2.0 Consensus size: 44
7978235 TATTCCATCA
**
7978245 AACCAAATACAAGAATATTATTATAATTCTATTTTATTCAATTC
1 AACCAAATACAAGAATATTATTATAATTCTATTCCATTCAATTC
*
7978289 AACCAAATACAAGAATATT-TTATAACTT-TATTCCATTCTATTC
1 AACCAAATACAAGAATATTATTATAA-TTCTATTCCATTCAATTC
7978332 AA
1 AA
7978334 TTAAACAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
43 20 0.49
44 21 0.51
ACGTcount: A:0.43, C:0.16, G:0.02, T:0.39
Consensus pattern (44 bp):
AACCAAATACAAGAATATTATTATAATTCTATTCCATTCAATTC
Found at i:7978374 original size:16 final size:16
Alignment explanation
Indices: 7978353--7978403 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
7978343 TAAATTACTG
*
7978353 ATTACAGTTTTATTCT
1 ATTACAATTTTATTCT
*
7978369 ATTACAATTTTATTCC
1 ATTACAATTTTATTCT
* **
7978385 ATTTCAATCATATTCT
1 ATTACAATTTTATTCT
7978401 ATT
1 ATT
7978404 CCAGTAAACC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.29, C:0.16, G:0.02, T:0.53
Consensus pattern (16 bp):
ATTACAATTTTATTCT
Found at i:7991113 original size:31 final size:31
Alignment explanation
Indices: 7991078--7991158 Score: 96
Period size: 31 Copynumber: 2.6 Consensus size: 31
7991068 ATGATGCTAG
*
7991078 AGATATTTTGA-TATTTTATAAT-TATTTAATT
1 AGATATTTT-ATTATTTTATAATAT-TTTAATA
*
7991109 AGATA-ATTATTATTTTATTAATATTTTAATA
1 AGATATTTTATTATTTTA-TAATATTTTAATA
7991140 AGATATTTTATTATTTTAT
1 AGATATTTTATTATTTTAT
7991159 TAGTATACAA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
29 1 0.02
30 9 0.21
31 21 0.49
32 12 0.28
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (31 bp):
AGATATTTTATTATTTTATAATATTTTAATA
Found at i:7993059 original size:46 final size:46
Alignment explanation
Indices: 7993002--7993250 Score: 331
Period size: 46 Copynumber: 5.4 Consensus size: 46
7992992 ATGAAATATG
*
7993002 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAATAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
* * * *
7993048 TAAGACCATGGTTGAGAGATACCATGGCAACATGAC-GGTAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG-AAAAGAA
* * * * * **
7993094 TAAGATCATGGTTGAAAGATACCATGGTAGCGTGATATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
7993140 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
* *
7993186 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAA-GAA
*
7993232 TAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGA
7993251 CATTATGGCA
Statistics
Matches: 176, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
45 6 0.03
46 169 0.96
47 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.25, T:0.20
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
Found at i:7993246 original size:138 final size:138
Alignment explanation
Indices: 7992992--7993250 Score: 446
Period size: 138 Copynumber: 1.9 Consensus size: 138
7992982 GCTCTCTGAA
*
7992992 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAATAGAATAAGACCAT
1 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCAT
* * * * *
7993057 GGTTGAGAGATACCATGGCAACATGACGGTAAATGAATAAGATCATGGTTGAAAGATACCATGGT
66 GGTTGAAAGATACCATGGCAACATGACAGAAAATGAATAAGACCATAGTTGAAAGATACCATGGT
7993122 AGCGTGAT
131 AGCGTGAT
*
7993130 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCAT
1 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCAT
*
7993195 GGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGA
66 GGTTGAAAGATACCATGGCAACATGACAGAAAATGAATAAGACCATAGTTGAAAGA
7993251 CATTATGGCA
Statistics
Matches: 113, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
138 113 1.00
ACGTcount: A:0.41, C:0.13, G:0.25, T:0.21
Consensus pattern (138 bp):
ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCAT
GGTTGAAAGATACCATGGCAACATGACAGAAAATGAATAAGACCATAGTTGAAAGATACCATGGT
AGCGTGAT
Found at i:7997393 original size:20 final size:20
Alignment explanation
Indices: 7997368--7997474 Score: 103
Period size: 20 Copynumber: 5.3 Consensus size: 20
7997358 TTCTTTAGAT
7997368 TTTTTGGTATTCCCTCATAA
1 TTTTTGGTATTCCCTCATAA
* **
7997388 TTTTTGGTATTTCCTCATGT
1 TTTTTGGTATTCCCTCATAA
* *
7997408 TTTTTAGTATATCCTTCGAT--
1 TTTTTGGTAT-TCCCTC-ATAA
*
7997428 TTTTTGGTATTCTCC-AATATA
1 TTTTTGGTATTC-CCTCATA-A
7997449 TTTTTGGTATTCCCTCATAA
1 TTTTTGGTATTCCCTCATAA
7997469 TTTTTG
1 TTTTTG
7997475 ATGCATTCTC
Statistics
Matches: 70, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
18 2 0.03
19 2 0.03
20 45 0.64
21 19 0.27
22 2 0.03
ACGTcount: A:0.18, C:0.16, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTTTGGTATTCCCTCATAA
Found at i:7997485 original size:20 final size:20
Alignment explanation
Indices: 7997462--7997538 Score: 75
Period size: 25 Copynumber: 3.6 Consensus size: 20
7997452 TTGGTATTCC
7997462 CTCATAATTTTTGATGCATT
1 CTCATAATTTTTGATGCATT
7997482 CTCATAATTTTATTTTTGATGCATT
1 CTCAT-A----ATTTTTGATGCATT
* *
7997507 CTCATAATTTTTTG-TACTTT
1 CTCATAA-TTTTTGATGCATT
7997527 CTCATAATTTTT
1 CTCATAATTTTT
7997539 TTATTCTCTC
Statistics
Matches: 49, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
19 5 0.10
20 17 0.35
21 7 0.14
24 1 0.02
25 19 0.39
ACGTcount: A:0.23, C:0.14, G:0.06, T:0.56
Consensus pattern (20 bp):
CTCATAATTTTTGATGCATT
Found at i:7997496 original size:25 final size:25
Alignment explanation
Indices: 7997468--7997517 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
7997458 TTCCCTCATA
7997468 ATTTTTGATGCATTCTCATAATTTT
1 ATTTTTGATGCATTCTCATAATTTT
7997493 ATTTTTGATGCATTCTCATAATTTT
1 ATTTTTGATGCATTCTCATAATTTT
7997518 TTGTACTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.12, G:0.08, T:0.56
Consensus pattern (25 bp):
ATTTTTGATGCATTCTCATAATTTT
Found at i:7997548 original size:19 final size:20
Alignment explanation
Indices: 7997505--7997581 Score: 79
Period size: 20 Copynumber: 3.9 Consensus size: 20
7997495 TTTTGATGCA
7997505 TTCTCATAATTTTTTGTACT
1 TTCTCATAATTTTTTGTACT
7997525 TTCTCATAATTTTTT-TA-T
1 TTCTCATAATTTTTTGTACT
* *
7997543 TCTCTCGT-AGTTTTTGATACT
1 T-TCTCATAATTTTTTG-TACT
* *
7997564 TCCTCATAATTATTTGTA
1 TTCTCATAATTTTTTGTA
7997582 TTGTTTCGAA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
18 8 0.17
19 7 0.15
20 23 0.50
21 8 0.17
ACGTcount: A:0.21, C:0.16, G:0.06, T:0.57
Consensus pattern (20 bp):
TTCTCATAATTTTTTGTACT
Found at i:7997691 original size:20 final size:21
Alignment explanation
Indices: 7997666--7997706 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
7997656 TTGGTACACC
7997666 CTCATAA-TTTTCTGTATGGT
1 CTCATAATTTTTCTGTATGGT
*
7997686 CTCATAATTTTTTTGTATGGT
1 CTCATAATTTTTCTGTATGGT
7997707 TTTGAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.20, C:0.12, G:0.15, T:0.54
Consensus pattern (21 bp):
CTCATAATTTTTCTGTATGGT
Found at i:7998134 original size:19 final size:20
Alignment explanation
Indices: 7998093--7998135 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
7998083 GCTAAAACTT
*
7998093 AATTTTGAAAGCATATCAAA
1 AATTCTGAAAGCATATCAAA
7998113 AATTCTGAAAGCATAT-AAA
1 AATTCTGAAAGCATATCAAA
7998132 AATT
1 AATT
7998136 ATGTGAGAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.30
Consensus pattern (20 bp):
AATTCTGAAAGCATATCAAA
Found at i:7998195 original size:20 final size:20
Alignment explanation
Indices: 7998172--7998233 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
7998162 GATTGTGAAT
7998172 AATTATAAAGGAATACCAAA
1 AATTATAAAGGAATACCAAA
*
7998192 AATTAT-TAGAGAATACCAAA
1 AATTATAAAG-GAATACCAAA
* * *
7998212 AATAATAAAGGAGTACTAAA
1 AATTATAAAGGAATACCAAA
7998232 AA
1 AA
7998234 CATGGGGTAC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 2 0.06
20 31 0.89
21 2 0.06
ACGTcount: A:0.60, C:0.08, G:0.11, T:0.21
Consensus pattern (20 bp):
AATTATAAAGGAATACCAAA
Found at i:8001997 original size:33 final size:33
Alignment explanation
Indices: 8001960--8002088 Score: 125
Period size: 33 Copynumber: 3.9 Consensus size: 33
8001950 ATAAATACAA
*
8001960 AATAGAGATAGTCCACTAGGACTGTAAACATAG
1 AATAGAGATAGTCCACTAGGACAGTAAACATAG
* ** * * * *
8001993 AATAGAGAAAGTCCGTTGGGACAGTAAAAACAA
1 AATAGAGATAGTCCACTAGGACAGTAAACATAG
* *
8002026 AATAGAGATAGCCCGCTAGGACAGTAAACATAG
1 AATAGAGATAGTCCACTAGGACAGTAAACATAG
* * *
8002059 -ATAAGAGATAGTCCATTGGGACAATAAACA
1 AAT-AGAGATAGTCCACTAGGACAGTAAACA
8002089 CAAATAAAGT
Statistics
Matches: 75, Mismatches: 20, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
32 2 0.03
33 73 0.97
ACGTcount: A:0.45, C:0.15, G:0.22, T:0.18
Consensus pattern (33 bp):
AATAGAGATAGTCCACTAGGACAGTAAACATAG
Found at i:8002028 original size:66 final size:65
Alignment explanation
Indices: 8001928--8002092 Score: 204
Period size: 66 Copynumber: 2.5 Consensus size: 65
8001918 TATGATATCC
* * * * * * *
8001928 ATAGAGAAATTTCGCTGGAACAATAAATACAAAATAGAGATAGTCCACTAGGACTGTAAACATAG
1 ATAGAGAAAGTCCGTTGGGACAATAAAAACAAAATAGAGATAGCCCACTAGGACAGTAAACATAG
* *
8001993 AATAGAGAAAGTCCGTTGGGACAGTAAAAACAAAATAGAGATAGCCCGCTAGGACAGTAAACATA
1 -ATAGAGAAAGTCCGTTGGGACAATAAAAACAAAATAGAGATAGCCCACTAGGACAGTAAACATA
8002058 G
65 G
* * *
8002059 ATAAGAGATAGTCCATTGGGACAATAAACACAAA
1 AT-AGAGAAAGTCCGTTGGGACAATAAAAACAAA
8002093 TAAAGTTCAT
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
65 2 0.02
66 83 0.98
ACGTcount: A:0.47, C:0.15, G:0.21, T:0.18
Consensus pattern (65 bp):
ATAGAGAAAGTCCGTTGGGACAATAAAAACAAAATAGAGATAGCCCACTAGGACAGTAAACATAG
Found at i:8002119 original size:28 final size:28
Alignment explanation
Indices: 8002077--8002145 Score: 75
Period size: 28 Copynumber: 2.5 Consensus size: 28
8002067 TAGTCCATTG
* * *
8002077 GGACAATAAACACAAATAAAGTTCATCA
1 GGACAGTAAACACAAATAAAGCTCACCA
* * *
8002105 GGACAGTAAATACAAGTTAAGCTCACCA
1 GGACAGTAAACACAAATAAAGCTCACCA
*
8002133 GGAAAGTAAACAC
1 GGACAGTAAACAC
8002146 GAGGTAAGTT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.49, C:0.19, G:0.16, T:0.16
Consensus pattern (28 bp):
GGACAGTAAACACAAATAAAGCTCACCA
Found at i:8004464 original size:43 final size:43
Alignment explanation
Indices: 8004400--8004521 Score: 201
Period size: 43 Copynumber: 2.9 Consensus size: 43
8004390 TCTAAATTCA
* *
8004400 TTCACCGGGATT-TCGCCTGCTAGGCTCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
**
8004442 TTCACCGGCATTATAGCCTGCTAGGCTCGGGGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
8004485 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGA
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGA
8004522 ATGGTACCAT
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 11 0.15
43 62 0.85
ACGTcount: A:0.20, C:0.30, G:0.25, T:0.26
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
Found at i:8007874 original size:22 final size:21
Alignment explanation
Indices: 8007839--8007883 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
8007829 AGATTGAATG
*
8007839 TGAAATCAATGGTTATATTTA
1 TGAAATCAATGGTTATATGTA
* *
8007860 TGAAATGCTATGGTTTTATGTA
1 TGAAAT-CAATGGTTATATGTA
8007882 TG
1 TG
8007884 CTTGGATGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.31, C:0.04, G:0.20, T:0.44
Consensus pattern (21 bp):
TGAAATCAATGGTTATATGTA
Found at i:8009688 original size:29 final size:26
Alignment explanation
Indices: 8009625--8009692 Score: 75
Period size: 25 Copynumber: 2.5 Consensus size: 26
8009615 TATCCAATGT
*
8009625 AACATCATTTACTTTAGATATTGAAA
1 AACATAATTTACTTTAGATATTGAAA
* *
8009651 AA-AAAATTTACTTTGGATATTAAAGAAA
1 AACATAATTTACTTTAGATATT---GAAA
8009679 AACATAATTTACTT
1 AACATAATTTACTT
8009693 GAATATAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
25 16 0.47
26 2 0.06
28 6 0.18
29 10 0.29
ACGTcount: A:0.47, C:0.09, G:0.07, T:0.37
Consensus pattern (26 bp):
AACATAATTTACTTTAGATATTGAAA
Found at i:8010812 original size:5 final size:5
Alignment explanation
Indices: 8010802--8010830 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
8010792 AAAAGTAGAT
8010802 TTAAA TTAAA TTAAA TTAAA TTAAA TTAA
1 TTAAA TTAAA TTAAA TTAAA TTAAA TTAA
8010831 TTGGAAATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TTAAA
Found at i:8018155 original size:27 final size:29
Alignment explanation
Indices: 8018125--8018180 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
8018115 TGTTTATTAT
8018125 TTTGGGTTAT-GGGTTTA-TGTTTTAGAG
1 TTTGGGTTATGGGGTTTATTGTTTTAGAG
*
8018152 TTTGGGTTTTGGGGTTTATTGTTTTAGAG
1 TTTGGGTTATGGGGTTTATTGTTTTAGAG
8018181 ATTAGGGTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 9 0.35
28 7 0.27
29 10 0.38
ACGTcount: A:0.12, C:0.00, G:0.34, T:0.54
Consensus pattern (29 bp):
TTTGGGTTATGGGGTTTATTGTTTTAGAG
Found at i:8018717 original size:14 final size:14
Alignment explanation
Indices: 8018677--8018721 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
8018667 GGTGTTTTGT
8018677 GGTTTAAGGTTTAG
1 GGTTTAAGGTTTAG
** * *
8018691 AATTCAAGATTTAG
1 GGTTTAAGGTTTAG
8018705 GGTTTAAGGTTTAG
1 GGTTTAAGGTTTAG
8018719 GGT
1 GGT
8018722 ATAATTTTGG
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.27, C:0.02, G:0.31, T:0.40
Consensus pattern (14 bp):
GGTTTAAGGTTTAG
Found at i:8024125 original size:9 final size:9
Alignment explanation
Indices: 8024111--8024189 Score: 75
Period size: 9 Copynumber: 9.7 Consensus size: 9
8024101 CCAGCAACTC
8024111 ACATAATTT
1 ACATAATTT
8024120 ACATAATTT
1 ACATAATTT
8024129 ACATAA--T
1 ACATAATTT
*
8024136 ACATAACTT
1 ACATAATTT
*
8024145 ATATAATTT
1 ACATAATTT
8024154 A-AT-A-TT
1 ACATAATTT
8024160 -CA-AATTT
1 ACATAATTT
*
8024167 -CATAACTT
1 ACATAATTT
8024175 ACATAATTT
1 ACATAATTT
8024184 ACATAA
1 ACATAA
8024190 ATATATATCA
Statistics
Matches: 59, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
6 4 0.07
7 12 0.20
8 6 0.10
9 37 0.63
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.41
Consensus pattern (9 bp):
ACATAATTT
Found at i:8025957 original size:12 final size:12
Alignment explanation
Indices: 8025940--8025965 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8025930 AAGATCGAGG
8025940 GATGAATCTGAT
1 GATGAATCTGAT
8025952 GATGAATCTGAT
1 GATGAATCTGAT
8025964 GA
1 GA
8025966 AGAGGATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:8027493 original size:21 final size:21
Alignment explanation
Indices: 8027469--8027511 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
8027459 AAATTGTGGA
8027469 ATAGTTGTTAATTCTTCAATT
1 ATAGTTGTTAATTCTTCAATT
8027490 ATAGTTGTTAATTCTTCAATT
1 ATAGTTGTTAATTCTTCAATT
8027511 A
1 A
8027512 CAAGTTATGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.51
Consensus pattern (21 bp):
ATAGTTGTTAATTCTTCAATT
Found at i:8029762 original size:33 final size:33
Alignment explanation
Indices: 8029720--8029800 Score: 103
Period size: 31 Copynumber: 2.5 Consensus size: 33
8029710 TTAGATTTAA
* * *
8029720 TGTTTTTGGTTGTATTTTTTATGCTACATTTGC
1 TGTTTTTGGTTGCATTTTTCATGCCACATTTGC
* *
8029753 TGTTTTTGGTTGGA--TTTCATGCCATATTTGC
1 TGTTTTTGGTTGCATTTTTCATGCCACATTTGC
8029784 TGTTTTTGGTTGCATTT
1 TGTTTTTGGTTGCATTT
8029801 AATGCAGGAA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
31 27 0.66
33 14 0.34
ACGTcount: A:0.11, C:0.10, G:0.21, T:0.58
Consensus pattern (33 bp):
TGTTTTTGGTTGCATTTTTCATGCCACATTTGC
Found at i:8029999 original size:43 final size:42
Alignment explanation
Indices: 8029922--8030021 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 42
8029912 TAAAAGCACT
* *
8029922 GCTAAAAGCCACGACTTTTAGCGAAGCTTCTCCCACAAACGTC
1 GCTAAAAGCCATGACTTTTAGCGAA-CTTCTCCCACAAACGCC
* *
8029965 GCTAAAAGCCATGACTTTTAGCAGCAA-TTTTCCCATAAACGCC
1 GCTAAAAGCCATGACTTTTAGC-G-AACTTCTCCCACAAACGCC
*
8030008 GCTAAAAGTCATGA
1 GCTAAAAGCCATGA
8030022 TCATTTGCGG
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
43 47 0.94
44 1 0.02
45 2 0.04
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (42 bp):
GCTAAAAGCCATGACTTTTAGCGAACTTCTCCCACAAACGCC
Found at i:8037031 original size:27 final size:27
Alignment explanation
Indices: 8037001--8037054 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
8036991 GGAATGATGG
*
8037001 GTTCATCATAGATCTATTTAAAGTTAA
1 GTTCATCACAGATCTATTTAAAGTTAA
8037028 GTTCATCACAGATCTATTTAAAGTTAA
1 GTTCATCACAGATCTATTTAAAGTTAA
8037055 CATATCATAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (27 bp):
GTTCATCACAGATCTATTTAAAGTTAA
Found at i:8041135 original size:2 final size:2
Alignment explanation
Indices: 8041128--8041153 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8041118 ATGTCCTTCT
8041128 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
8041154 GGTTAACAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8046614 original size:5 final size:5
Alignment explanation
Indices: 8046606--8046632 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
8046596 AAAATAATAT
8046606 TATTA TATTA TATTA TATTA TATTA TA
1 TATTA TATTA TATTA TATTA TATTA TA
8046633 ATAGCTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:8046657 original size:9 final size:9
Alignment explanation
Indices: 8046643--8046675 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
8046633 ATAGCTTAAT
8046643 AATAAAATA
1 AATAAAATA
*
8046652 AATAAAAGA
1 AATAAAATA
8046661 AATAAAAT-
1 AATAAAATA
8046669 AATAAAA
1 AATAAAA
8046676 AAACATAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (9 bp):
AATAAAATA
Found at i:8046683 original size:18 final size:18
Alignment explanation
Indices: 8046643--8046683 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
8046633 ATAGCTTAAT
*
8046643 AATAAAATAAATAAAAGA
1 AATAAAATAAATAAAAAA
8046661 AATAAAAT-AATAAAAAA
1 AATAAAATAAATAAAAAA
8046678 ACATAA
1 A-ATAA
8046684 GTAGAAAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.17
Consensus pattern (18 bp):
AATAAAATAAATAAAAAA
Found at i:8047960 original size:16 final size:17
Alignment explanation
Indices: 8047941--8047975 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
8047931 ATGATTTTTG
*
8047941 TTATAAATGTT-TAAAA
1 TTATAAATATTGTAAAA
8047957 TTATAAATATTGTAAAA
1 TTATAAATATTGTAAAA
8047974 TT
1 TT
8047976 CTTGTTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (17 bp):
TTATAAATATTGTAAAA
Found at i:8054870 original size:15 final size:15
Alignment explanation
Indices: 8054850--8054883 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
8054840 GAGTATTGGT
8054850 ATTAAATTGAATTGA
1 ATTAAATTGAATTGA
8054865 ATTAAATTGAATTGA
1 ATTAAATTGAATTGA
8054880 ATTA
1 ATTA
8054884 TGAGTATATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (15 bp):
ATTAAATTGAATTGA
Found at i:8055476 original size:16 final size:17
Alignment explanation
Indices: 8055457--8055491 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
8055447 ATGATTTTTG
*
8055457 TTATAAATGTT-TAAAA
1 TTATAAATATTGTAAAA
8055473 TTATAAATATTGTAAAA
1 TTATAAATATTGTAAAA
8055490 TT
1 TT
8055492 CTTGTTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (17 bp):
TTATAAATATTGTAAAA
Found at i:8057565 original size:34 final size:34
Alignment explanation
Indices: 8057522--8057591 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
8057512 GCATGACTGC
8057522 TACTAATACTGTGATGGGCTAAGGCCCTAATGCA
1 TACTAATACTGTGATGGGCTAAGGCCCTAATGCA
*
8057556 TACTAATACTGTGATGGGCTAAGGCCCTACTGCA
1 TACTAATACTGTGATGGGCTAAGGCCCTAATGCA
8057590 TA
1 TA
8057592 TTTGATACTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (34 bp):
TACTAATACTGTGATGGGCTAAGGCCCTAATGCA
Found at i:8059008 original size:32 final size:32
Alignment explanation
Indices: 8058967--8059028 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
8058957 GAGTCGAAGA
8058967 GTTGTAGAATTAATATTGAGTCAATCGACAGG
1 GTTGTAGAATTAATATTGAGTCAATCGACAGG
8058999 GTTGTAGAATTAATATTGAGTCAATCGACA
1 GTTGTAGAATTAATATTGAGTCAATCGACA
8059029 TTTAATTATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.32
Consensus pattern (32 bp):
GTTGTAGAATTAATATTGAGTCAATCGACAGG
Found at i:8061337 original size:14 final size:14
Alignment explanation
Indices: 8061320--8061346 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8061310 ACTACCATTT
8061320 TACTATTATGTTGC
1 TACTATTATGTTGC
8061334 TACTATTATGTTG
1 TACTATTATGTTG
8061347 TTATTGTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.11, G:0.15, T:0.52
Consensus pattern (14 bp):
TACTATTATGTTGC
Found at i:8062616 original size:22 final size:23
Alignment explanation
Indices: 8062565--8062619 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
8062555 AAAATATAAT
*
8062565 TTTAAATACTTTGTACATAATTAA
1 TTTAAATA-TTTGTACAGAATTAA
* *
8062589 TATAAATATTTGTA-AGACTTAA
1 TTTAAATATTTGTACAGAATTAA
8062611 TTTAAATAT
1 TTTAAATAT
8062620 ACAAATCATA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 14 0.52
23 6 0.22
24 7 0.26
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.45
Consensus pattern (23 bp):
TTTAAATATTTGTACAGAATTAA
Found at i:8081628 original size:13 final size:13
Alignment explanation
Indices: 8081594--8081620 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8081584 ACATTTATCC
8081594 TAGTCCATCACAA
1 TAGTCCATCACAA
8081607 TAGTCCATCACAA
1 TAGTCCATCACAA
8081620 T
1 T
8081621 GGATCATCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.30, G:0.07, T:0.26
Consensus pattern (13 bp):
TAGTCCATCACAA
Found at i:8084943 original size:105 final size:104
Alignment explanation
Indices: 8084781--8085092 Score: 455
Period size: 105 Copynumber: 3.0 Consensus size: 104
8084771 AAAATTCTTT
* * * *
8084781 ATTACTAATT-TTTTTTGTTTCTTTGAAAAGGAGATGCTGTAAGCTTTCTTTTATTTGAACGTGA
1 ATTATTAATTCTTTTTTGTTTCTCTGAAAATGAGATGTTGTAAGCTTTCTTTTATTTGAA-GTGA
* *
8084845 TAGTATCACTGTTAATTAACAAAATAAAAATATAATTTAA
65 TAGTATTACTGTTAATTAACAAAATAAAATTATAATTTAA
* * * *
8084885 ATTATTAATTCTTTTTTGTTTCTGTGAAAATAAGATATTGTAAACTTTCTTTTATTTGAAGATGA
1 ATTATTAATTCTTTTTTGTTTCTCTGAAAATGAGATGTTGTAAGCTTTCTTTTATTTGAAG-TGA
*
8084950 TAGTATTACTGTTAATTAATAAAATAAAATTATAATTTAA
65 TAGTATTACTGTTAATTAACAAAATAAAATTATAATTTAA
* * *
8084990 ATCATTAATTCGTTTTTGTTTCTCTGGAAATGAGATGTTGTAAGCTTTCTTTTATTTGAAGGTGA
1 ATTATTAATTCTTTTTTGTTTCTCTGAAAATGAGATGTTGTAAGCTTTCTTTTATTTGAA-GTGA
8085055 TAGTATTACTGTTAATTAACAAAATAAAATTATTAATT
65 TAGTATTACTGTTAATTAACAAAATAAAATTA-TAATT
8085093 CTTTTTTATT
Statistics
Matches: 186, Mismatches: 18, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
104 10 0.05
105 170 0.91
106 6 0.03
ACGTcount: A:0.35, C:0.07, G:0.12, T:0.46
Consensus pattern (104 bp):
ATTATTAATTCTTTTTTGTTTCTCTGAAAATGAGATGTTGTAAGCTTTCTTTTATTTGAAGTGAT
AGTATTACTGTTAATTAACAAAATAAAATTATAATTTAA
Found at i:8087151 original size:16 final size:16
Alignment explanation
Indices: 8087132--8087183 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
8087122 AACAGGCCTG
*
8087132 TAATTGAATAGAGTTT
1 TAATTGAATAGAGTTA
* *
8087148 TAATTGAATAGAGCTG
1 TAATTGAATAGAGTTA
* *
8087164 TAATGGAATAAAGTTA
1 TAATTGAATAGAGTTA
8087180 TAAT
1 TAAT
8087184 CAGTAATTCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.42, C:0.02, G:0.19, T:0.37
Consensus pattern (16 bp):
TAATTGAATAGAGTTA
Found at i:8087441 original size:58 final size:54
Alignment explanation
Indices: 8087362--8087484 Score: 149
Period size: 58 Copynumber: 2.2 Consensus size: 54
8087352 TTTTAATAAG
* *
8087362 ATTATTATTGAAAATAATTTAATAAAAATAATAAATAATTTAATCATATT-TTAACATA
1 ATTATTATT-AAAATAATTTAAT-AAAA-AAT--ATAATTTAATAACATTCTTAACATA
**
8087420 ATTATTATTAAATATAATTTAATAAAAAATATAATTTAATAACATTCTTAATGTA
1 ATTATTATTAAA-ATAATTTAATAAAAAATATAATTTAATAACATTCTTAACATA
8087475 ATTATTATTA
1 ATTATTATTA
8087485 TATGAATTAA
Statistics
Matches: 59, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
54 14 0.24
55 16 0.27
56 3 0.05
57 7 0.12
58 19 0.32
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (54 bp):
ATTATTATTAAAATAATTTAATAAAAAATATAATTTAATAACATTCTTAACATA
Found at i:8087451 original size:17 final size:17
Alignment explanation
Indices: 8087429--8087461 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
8087419 AATTATTATT
8087429 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
8087446 AAATATAATTTAATAA
1 AAATATAATTTAATAA
8087462 CATTCTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:8092088 original size:31 final size:31
Alignment explanation
Indices: 8092053--8092170 Score: 200
Period size: 31 Copynumber: 3.8 Consensus size: 31
8092043 CTTGTCACTT
*
8092053 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
* *
8092084 GTAGCCGAAGCTACCATTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
*
8092115 GTAGCCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
8092146 GTAGCCAAAGCTACCACTTTTCACT
1 GTAGCCAAAGCTACCACTTTTCACT
8092171 TGTCATTTGT
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 82 1.00
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (31 bp):
GTAGCCAAAGCTACCACTTTTCACTGATCAG
Found at i:8092249 original size:50 final size:51
Alignment explanation
Indices: 8092146--8092274 Score: 179
Period size: 50 Copynumber: 2.5 Consensus size: 51
8092136 CACTGATCAG
* * * *
8092146 GTAGCCAAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAAATAAGT
* * *
8092197 GTAGTCGAAGCTATCACTTATCACTT-TCACTTGTTCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAAATAAGT
*
8092247 GTAGCCGGAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
8092275 TGCCATGGTC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 45 0.66
51 23 0.34
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAAATAAGT
Found at i:8094397 original size:17 final size:17
Alignment explanation
Indices: 8094371--8094514 Score: 130
Period size: 17 Copynumber: 8.4 Consensus size: 17
8094361 CGATATTTTT
8094371 TTTTTGAAAACACGAAAA
1 TTTTT-AAAACACGAAAA
*
8094389 TTTTCAAAACACCG-AAA
1 TTTTTAAAACA-CGAAAA
* **
8094406 TTTTTGAAAACAAGAGGA
1 TTTTT-AAAACACGAAAA
* *
8094424 TTTTTGAAATACGAAAAA
1 TTTTTAAAACACG-AAAA
*
8094442 TTTTGAAAACACGAAAA
1 TTTTTAAAACACGAAAA
* *
8094459 TTTTTGAAACACGGAAA
1 TTTTTAAAACACGAAAA
*
8094476 TTTTTGAAA-ACGAAAA
1 TTTTTAAAACACGAAAA
* *
8094492 TTTTTGAAACACAAAAA
1 TTTTTAAAACACGAAAA
8094509 TTTTTA
1 TTTTTA
8094515 GAAGACACTA
Statistics
Matches: 102, Mismatches: 19, Indels: 11
0.77 0.14 0.08
Matches are distributed among these distances:
16 15 0.15
17 57 0.56
18 30 0.29
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.31
Consensus pattern (17 bp):
TTTTTAAAACACGAAAA
Found at i:8094399 original size:39 final size:38
Alignment explanation
Indices: 8094281--8094410 Score: 108
Period size: 39 Copynumber: 3.4 Consensus size: 38
8094271 GATCCGATTG
* *
8094281 AAACACGAGAATTTCTTGTTTTGAAAACACGAGAATTTTA
1 AAACACGA-AATTT-TTTTTTTGAAAACACGAAAATTTTA
* * * *
8094321 AGACA-TAATATTTGTTTTTT--AAAC-C-AAAATTTATG
1 AAACACGAA-ATTTTTTTTTTGAAAACACGAAAATTT-TA
*
8094356 AAACACGATATTTTTTTTTTGAAAACACGAAAATTTTCA
1 AAACACGAAATTTTTTTTTTGAAAACACGAAAATTTT-A
8094395 AAACACCGAAATTTTT
1 AAACA-CGAAATTTTT
8094411 GAAAACAAGA
Statistics
Matches: 69, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
34 6 0.09
35 16 0.23
36 5 0.07
37 4 0.06
38 8 0.12
39 17 0.25
40 13 0.19
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37
Consensus pattern (38 bp):
AAACACGAAATTTTTTTTTTGAAAACACGAAAATTTTA
Found at i:8094417 original size:35 final size:35
Alignment explanation
Indices: 8094371--8094527 Score: 167
Period size: 35 Copynumber: 4.5 Consensus size: 35
8094361 CGATATTTTT
**
8094371 TTTTTGAAAACACGAAAATTTTCAAAACACCGAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
* ** *
8094406 TTTTTGAAAACAAGAGGATTTTTGAAATA-CGAAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCG-AAA
* *
8094441 ATTTTGAAAACACGAAAATTTTTGAAACACGGAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
**
8094476 TTTTTG-AAA-ACGAAAATTTTTGAAACACAAAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
* *
8094509 TTTTTAGAAGACACTAAAA
1 TTTTT-GAAAACACGAAAA
8094528 ATTTAGGAAA
Statistics
Matches: 100, Mismatches: 17, Indels: 9
0.79 0.13 0.07
Matches are distributed among these distances:
33 27 0.27
34 6 0.06
35 60 0.60
36 7 0.07
ACGTcount: A:0.48, C:0.11, G:0.12, T:0.29
Consensus pattern (35 bp):
TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
Found at i:8095140 original size:7 final size:7
Alignment explanation
Indices: 8095128--8095171 Score: 70
Period size: 7 Copynumber: 6.0 Consensus size: 7
8095118 CTTTTTCTTC
8095128 CTTTTTT
1 CTTTTTT
8095135 CTTTTTT
1 CTTTTTT
8095142 CCTTTTTT
1 -CTTTTTT
8095150 CTTTTTT
1 CTTTTTT
8095157 CTTTTTT
1 CTTTTTT
8095164 CTTCTTTT
1 CTT-TTTT
8095172 TCTTCCTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
7 24 0.69
8 11 0.31
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (7 bp):
CTTTTTT
Found at i:8095145 original size:15 final size:15
Alignment explanation
Indices: 8095120--8095171 Score: 79
Period size: 15 Copynumber: 3.4 Consensus size: 15
8095110 TGAACCCCCT
8095120 TTTTCTTCCTTTTTTC
1 TTTT-TTCCTTTTTTC
8095136 TTTTTTCCTTTTTTC
1 TTTTTTCCTTTTTTC
8095151 TTTTTT-CTTTTTTC
1 TTTTTTCCTTTTTTC
8095165 TTCTTTT
1 TT-TTTT
8095172 TCTTCCTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
14 10 0.29
15 21 0.60
16 4 0.11
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTTTCCTTTTTTC
Found at i:8095156 original size:22 final size:23
Alignment explanation
Indices: 8095128--8095175 Score: 80
Period size: 22 Copynumber: 2.1 Consensus size: 23
8095118 CTTTTTCTTC
8095128 CTTTTTTCTTTTTTCCT-TTTTT
1 CTTTTTTCTTTTTTCCTCTTTTT
*
8095150 CTTTTTTCTTTTTTCTTCTTTTT
1 CTTTTTTCTTTTTTCCTCTTTTT
8095173 CTT
1 CTT
8095176 CCTTTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 16 0.67
23 8 0.33
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (23 bp):
CTTTTTTCTTTTTTCCTCTTTTT
Found at i:8095173 original size:23 final size:22
Alignment explanation
Indices: 8095118--8095188 Score: 81
Period size: 23 Copynumber: 3.1 Consensus size: 22
8095108 ATTGAACCCC
8095118 CTTTTTCTTCCTTTTTTCTTTTTT
1 CTTTTT-TT-CTTTTTTCTTTTTT
*
8095142 CCTTTTTTCTTTTTTCTTTTTT
1 CTTTTTTTCTTTTTTCTTTTTT
*
8095164 CTTCTTTTTCTTCCTTT-TTTTTT
1 CTT-TTTTTCTT-TTTTCTTTTTT
8095187 CT
1 CT
8095189 GCTGGGCTGC
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
22 16 0.38
23 18 0.43
24 8 0.19
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (22 bp):
CTTTTTTTCTTTTTTCTTTTTT
Found at i:8095186 original size:15 final size:14
Alignment explanation
Indices: 8095119--8095187 Score: 59
Period size: 15 Copynumber: 4.6 Consensus size: 14
8095109 TTGAACCCCC
*
8095119 TTTTTCTTCCTTTT
1 TTTTTTTTCCTTTT
8095133 TTCTTTTTTCCTTTT
1 TT-TTTTTTCCTTTT
8095148 TTCTTTTTT-CTTTT
1 TT-TTTTTTCCTTTT
* *
8095162 TTCTTCTTTTTCTTCCT
1 TT-TT-TTTTCCTT-TT
8095179 TTTTTTTTC
1 TTTTTTTTC
8095188 TGCTGGGCTG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
14 12 0.25
15 28 0.58
16 5 0.10
17 3 0.06
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTTTTTCCTTTT
Found at i:8095469 original size:3 final size:3
Alignment explanation
Indices: 8095463--8095521 Score: 73
Period size: 3 Copynumber: 18.0 Consensus size: 3
8095453 TTTCTTTTTT
8095463 TTC TTC TTTC TTC TTC TCTC TTTC TTTC TTC TTC TTC TTC TTCC TTC
1 TTC TTC -TTC TTC TTC T-TC -TTC -TTC TTC TTC TTC TTC TT-C TTC
8095510 TTC TTC TTC TTC
1 TTC TTC TTC TTC
8095522 AAAACCGAGC
Statistics
Matches: 52, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
3 37 0.71
4 14 0.27
5 1 0.02
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TTC
Found at i:8095474 original size:16 final size:16
Alignment explanation
Indices: 8095453--8095520 Score: 91
Period size: 16 Copynumber: 4.1 Consensus size: 16
8095443 TAAAATTTTT
* *
8095453 TTTCTTTTTTTTCTTC
1 TTTCTTCTTCTTCTTC
8095469 TTTCTTCTTCTCTCTTTC
1 TTTCTTCTTCT-TC-TTC
8095487 TTTCTTCTTCTTCTTC
1 TTTCTTCTTCTTCTTC
*
8095503 TTCCTTCTTCTTCTTC
1 TTTCTTCTTCTTCTTC
8095519 TT
1 TT
8095521 CAAAACCGAG
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
16 29 0.62
17 4 0.09
18 14 0.30
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTCTTCTTCTTCTTC
Found at i:8095501 original size:34 final size:33
Alignment explanation
Indices: 8095453--8095517 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 33
8095443 TAAAATTTTT
* * *
8095453 TTTCTTTTTTTTCTTCTTTCTTCTTCTCTCTTTC
1 TTTCTTCTTCTTCTTCTTCCTTCTTCT-TCTTTC
8095487 TTTCTTCTTCTTCTTCTTCCTTCTTCTTCTT
1 TTTCTTCTTCTTCTTCTTCCTTCTTCTTCTT
8095518 CTTCAAAACC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 4 0.14
34 24 0.86
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (33 bp):
TTTCTTCTTCTTCTTCTTCCTTCTTCTTCTTTC
Found at i:8095929 original size:30 final size:31
Alignment explanation
Indices: 8095874--8095990 Score: 129
Period size: 30 Copynumber: 3.9 Consensus size: 31
8095864 TGTAATTTTT
*
8095874 AGAAAATTTA-GGGT-TAAAATGAAATTTAA
1 AGAAAGTTTAGGGGTCTAAAATGAAATTTAA
* *
8095903 TGAAAGTTTAGGGGTCT-AAGTGAAATTTAA
1 AGAAAGTTTAGGGGTCTAAAATGAAATTTAA
*
8095933 AGAAAGTTTAAGGGT-TAAAATGAAATTT-A
1 AGAAAGTTTAGGGGTCTAAAATGAAATTTAA
* *
8095962 GGAAAAGTTTAGGGGTC-AAAATGCAATTT
1 AG-AAAGTTTAGGGGTCTAAAATGAAATTT
8095991 TTATTTTTTA
Statistics
Matches: 74, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
29 11 0.15
30 62 0.84
31 1 0.01
ACGTcount: A:0.44, C:0.03, G:0.23, T:0.31
Consensus pattern (31 bp):
AGAAAGTTTAGGGGTCTAAAATGAAATTTAA
Found at i:8095990 original size:60 final size:59
Alignment explanation
Indices: 8095874--8095990 Score: 164
Period size: 60 Copynumber: 2.0 Consensus size: 59
8095864 TGTAATTTTT
* * *
8095874 AGAAAATTTAGGGTTAAAATGAAATTTAATGAAAGTTTAGGGGTCTAAGTGAAATTTAA
1 AGAAAATTTAGGGTTAAAATGAAATTTAAGGAAAGTTTAGGGGTCAAAATGAAATTTAA
* *
8095933 AGAAAGTTTAAGGGTTAAAATGAAATTT-AGGAAAAGTTTAGGGGTCAAAATGCAATTT
1 AGAAAATTT-AGGGTTAAAATGAAATTTAAGG-AAAGTTTAGGGGTCAAAATGAAATTT
8095991 TTATTTTTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
59 10 0.20
60 41 0.80
ACGTcount: A:0.44, C:0.03, G:0.23, T:0.31
Consensus pattern (59 bp):
AGAAAATTTAGGGTTAAAATGAAATTTAAGGAAAGTTTAGGGGTCAAAATGAAATTTAA
Found at i:8096339 original size:54 final size:53
Alignment explanation
Indices: 8096261--8096477 Score: 280
Period size: 54 Copynumber: 4.1 Consensus size: 53
8096251 CACGTGAGCC
* *
8096261 AAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTGAAAACAGAATTTGCCA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAA-TTG-AA
*** *
8096315 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA-A-AATAGAAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTG-AA
* *
8096367 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAATAGAAATT-AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACAG-AATTGAA
8096421 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAG-AATTGAA
8096475 AAG
1 AAG
8096478 TAGAAATTGA
Statistics
Matches: 143, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
52 40 0.28
53 15 0.10
54 79 0.55
55 6 0.04
56 3 0.02
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (53 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTGAA
Found at i:8096446 original size:106 final size:105
Alignment explanation
Indices: 8096261--8096458 Score: 317
Period size: 106 Copynumber: 1.9 Consensus size: 105
8096251 CACGTGAGCC
* * *
8096261 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAGAATTTGCCAAAGGCTCAACT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAAATT-CAAAAGGCTCAACT
8096326 CACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAA
65 CACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAA
* *
8096367 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAATAGAAATT-AAAAGGCTCAAC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTT-GATTTTG-AAAACAGAAATTCAAAAGGCTCAAC
8096431 TCACCTCTCGCAATATGAGTTGATTTTT
64 TCACCTCTCGCAATATGAGTTGATTTTT
8096459 GAAAACAGAA
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
106 69 0.81
107 6 0.07
108 10 0.12
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (105 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTCAAAAGGCTCAACTC
ACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAA
Found at i:8096475 original size:13 final size:14
Alignment explanation
Indices: 8096457--8096490 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
8096447 GAGTTGATTT
8096457 TTGAAAA-CAGAAA
1 TTGAAAAGCAGAAA
*
8096470 TTGAAAAGTAGAAA
1 TTGAAAAGCAGAAA
8096484 TTGAAAA
1 TTGAAAA
8096491 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.59, C:0.03, G:0.18, T:0.21
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:8096769 original size:15 final size:16
Alignment explanation
Indices: 8096736--8096769 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8096726 GTTGATTTTG
* *
8096736 AAAAGCATAGATTGAA
1 AAAAACATAAATTGAA
8096752 AAAAACATAAATTGAA
1 AAAAACATAAATTGAA
8096768 AA
1 AA
8096770 TACCTCAGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.18
Consensus pattern (16 bp):
AAAAACATAAATTGAA
Found at i:8096838 original size:88 final size:87
Alignment explanation
Indices: 8096577--8096840 Score: 311
Period size: 88 Copynumber: 3.0 Consensus size: 87
8096567 AACAAAAATT
* * * * *
8096577 AAAAACAGAATTTGAAAAGACCTCAGCATGTGGCCTGAGACTCAACTCACCTCTTGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCATGT--CTTGAGGCTCAACTCACCTCTCGCAATATGAG
*
8096642 TTGA-TTT-AAAA-AGTAGAATT-AG
64 TTGATTTTGAAAACAG-A-AATTGAA
* * * *
8096664 TAAAACAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATAAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
8096729 GATTTTGAAAAGCATAGATTGAA
66 GATTTTGAAAA-CAGAAATTGAA
* **
8096752 AAAAACATAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
8096817 GAATTTTGAAAACAGAAATTGAA
66 G-ATTTTGAAAACAGAAATTGAA
8096840 A
1 A
8096841 TTACCTCAAC
Statistics
Matches: 150, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
85 32 0.21
86 3 0.02
87 33 0.22
88 71 0.47
89 11 0.07
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (87 bp):
AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTGAAAACAGAAATTGAA
Found at i:8096870 original size:72 final size:72
Alignment explanation
Indices: 8096752--8096912 Score: 254
Period size: 72 Copynumber: 2.2 Consensus size: 72
8096742 ATAGATTGAA
* *
8096752 AAAAACATAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAAAACAAAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
8096817 GAATTTTG
66 G-ATTTTG
* * *
8096825 -AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAAAACAAAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
8096889 GATTTTG
66 GATTTTG
8096896 AAAAACAAAAATT-AAAA
1 AAAAACAAAAATTGAAAA
8096913 GGCTTAACTC
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 9 0.11
72 72 0.89
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (72 bp):
AAAAACAAAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
GATTTTG
Found at i:8097007 original size:122 final size:126
Alignment explanation
Indices: 8096787--8097021 Score: 352
Period size: 122 Copynumber: 1.9 Consensus size: 126
8096777 GCATGTCTTG
** * * * *
8096787 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAATTTTGAAAACAGAAACTAAAAATACCTCAACG
*
8096852 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTTGAAAAACAAAAATTAAA
66 TGTCTTAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAAAAATTAAA
* * *
8096912 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT-AAAACATAAACTAAAAATACCTCAATG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAATTTTGAAAACAGAAACTAAAAATACCTCAACG
8096974 TGTCTTAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAA
66 TGTCTTAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAA
8097022 CAGAAATTGA
Statistics
Matches: 99, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
122 59 0.60
123 12 0.12
124 3 0.03
125 25 0.25
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (126 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTCAATTTTGAAAACAGAAACTAAAAATACCTCAACG
TGTCTTAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAAAAATTAAA
Found at i:8097212 original size:72 final size:72
Alignment explanation
Indices: 8096912--8097893 Score: 1667
Period size: 72 Copynumber: 13.7 Consensus size: 72
8096902 AAAAATTAAA
* ** * * * * * *
8096912 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT-AAAACATAAACTAAAAATACCTCAATG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
*
8096974 TGTCTTA
66 TGTCTTG
8096981 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
8097045 TGTCTTG
66 TGTCTTG
* *
8097052 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAAATTGAAAATACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA-AAACAGAAATTGAAATTACCTCAAC
8097117 GTGTCTTG
65 GTGTCTTG
8097125 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
8097190 TGTCTTG
66 TGTCTTG
8097197 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
8097262 TGTCTTG
66 TGTCTTG
8097269 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACA-AAGATTGAAATTACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAA-ATTGAAATTACCTCAAC
8097333 GTGTCTTG
65 GTGTCTTG
8097341 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
*
8097406 TGTCTTA
66 TGTCTTG
*
8097413 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
8097478 TGTCTTG
66 TGTCTTG
*
8097485 AGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTGAAAACA-AAGATTGAAATTACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAA-ATTGAAATTACCTCAAC
*
8097549 ATGTCTTG
65 GTGTCTTG
*
8097557 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAGAAGCAGAAATTGAAA-TACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA-AAACAGAAATTGAAATTACCTCAAC
8097621 GTGTCTTG
65 GTGTCTTG
*
8097629 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
8097694 TGTCTTG
66 TGTCTTG
*
8097701 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGACATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
8097766 TGTCTTG
66 TGTCTTG
*
8097773 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACA-AAGATTGAAATTGCCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAA-ATTGAAATTACCTCAAC
8097837 GTGTCTTG
65 GTGTCTTG
8097845 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTG-AAACAGAAAT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAA-TTTTGAAAACAGAAAT
8097894 AAAAGCATCA
Statistics
Matches: 870, Mismatches: 29, Indels: 25
0.94 0.03 0.03
Matches are distributed among these distances:
69 25 0.03
70 3 0.00
71 86 0.10
72 664 0.76
73 90 0.10
74 2 0.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (72 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
TGTCTTG
Found at i:8100117 original size:15 final size:15
Alignment explanation
Indices: 8100089--8100133 Score: 67
Period size: 14 Copynumber: 3.1 Consensus size: 15
8100079 TTTTTTTTTG
*
8100089 TTTTTTC-TTGTCTT
1 TTTTTTCTTTTTCTT
8100103 TTTTTTCTTTTTC-T
1 TTTTTTCTTTTTCTT
8100117 TTTTTTCTTTTTCTT
1 TTTTTTCTTTTTCTT
8100132 TT
1 TT
8100134 CATGACTGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 21 0.75
15 7 0.25
ACGTcount: A:0.00, C:0.13, G:0.02, T:0.84
Consensus pattern (15 bp):
TTTTTTCTTTTTCTT
Found at i:8100127 original size:20 final size:19
Alignment explanation
Indices: 8100078--8100133 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 19
8100068 TGGCATTTGA
*
8100078 TTTTTTTTTTGT-TTTTTC
1 TTTTTTTTTTTTCTTTTTC
*
8100096 TTGTCTTTTTTTTCTTTTTC
1 TT-TTTTTTTTTTCTTTTTC
8100116 TTTTTTTCTTTTTCTTTT
1 TTTTTTT-TTTTTCTTTT
8100134 CATGACTGTC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 2 0.06
19 12 0.38
20 18 0.56
ACGTcount: A:0.00, C:0.11, G:0.04, T:0.86
Consensus pattern (19 bp):
TTTTTTTTTTTTCTTTTTC
Found at i:8103868 original size:18 final size:17
Alignment explanation
Indices: 8103836--8103973 Score: 126
Period size: 17 Copynumber: 8.2 Consensus size: 17
8103826 AGATATTTTT
8103836 TTTTGAAAACACGAAAA
1 TTTTGAAAACACGAAAA
* *
8103853 TTTTCAAAACACCGAAAT
1 TTTTGAAAACA-CGAAAA
* * *
8103871 TTTTGAAAACAAGAGGAT
1 TTTTGAAAACACGA-AAA
*
8103889 TTTTG-AAATACGAAAA
1 TTTTGAAAACACGAAAA
*
8103905 ATTTGAAAACACGAAAA
1 TTTTGAAAACACGAAAA
*
8103922 TTTTTG-AAACACGGAAA
1 -TTTTGAAAACACGAAAA
8103939 TTTTG-AAA-ACGAAAA
1 TTTTGAAAACACGAAAA
8103954 TTTTTG-AAACAC-AAAA
1 -TTTTGAAAACACGAAAA
8103970 TTTT
1 TTTT
8103974 TAGAAGACAC
Statistics
Matches: 101, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
15 10 0.10
16 25 0.25
17 40 0.40
18 26 0.26
ACGTcount: A:0.48, C:0.11, G:0.12, T:0.29
Consensus pattern (17 bp):
TTTTGAAAACACGAAAA
Found at i:8104209 original size:20 final size:19
Alignment explanation
Indices: 8104171--8104217 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
8104161 AATATATATT
8104171 TTTTTGAAACACGAGAAAAA
1 TTTTTGAAACACG-GAAAAA
*
8104191 TTTTTGAAGGCAC-GAAAAA
1 TTTTTGAA-ACACGGAAAAA
8104210 -TTTTGAAA
1 TTTTTGAAA
8104218 AATAGAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 7 0.29
19 6 0.25
20 8 0.33
21 3 0.12
ACGTcount: A:0.45, C:0.09, G:0.17, T:0.30
Consensus pattern (19 bp):
TTTTTGAAACACGGAAAAA
Found at i:8104592 original size:7 final size:7
Alignment explanation
Indices: 8104580--8104622 Score: 59
Period size: 7 Copynumber: 5.9 Consensus size: 7
8104570 TTTTTCTTCA
8104580 TTTTTTC
1 TTTTTTC
8104587 TTTTTTC
1 TTTTTTC
*
8104594 CTTTTTC
1 TTTTTTC
8104601 TTTTTTTC
1 -TTTTTTC
8104609 TTTTTTC
1 TTTTTTC
8104616 TTCTTTT
1 TT-TTTT
8104623 TCTTCCTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
7 22 0.69
8 10 0.31
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTTC
Found at i:8104602 original size:25 final size:24
Alignment explanation
Indices: 8104568--8104634 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 24
8104558 AATTGAACCC
8104568 CCTTTTTCTTCATTTTTTCTTTTTT
1 CCTTTTTCTTC-TTTTTTCTTTTTT
8104593 CCTTTTTC-T-TTTTTTCTTTTTT
1 CCTTTTTCTTCTTTTTTCTTTTTT
8104615 CTTCTTTTTCTTCCTTTTTT
1 C--CTTTTTCTT-CTTTTTT
8104635 TTTCTGCTGG
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
22 14 0.38
24 8 0.22
25 9 0.24
27 6 0.16
ACGTcount: A:0.01, C:0.21, G:0.00, T:0.78
Consensus pattern (24 bp):
CCTTTTTCTTCTTTTTTCTTTTTT
Found at i:8104637 original size:15 final size:15
Alignment explanation
Indices: 8104581--8104624 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
8104571 TTTTCTTCAT
8104581 TTTTTC-TTTTTTCC
1 TTTTTCTTTTTTTCC
*
8104595 TTTTTCTTTTTTTCT
1 TTTTTCTTTTTTTCC
8104610 TTTTTCTTCTTTTTC
1 TTTTTCTT-TTTTTC
8104625 TTCCTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 6 0.22
15 15 0.56
16 6 0.22
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTCTTTTTTTCC
Found at i:8104637 original size:25 final size:23
Alignment explanation
Indices: 8104568--8104637 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 23
8104558 AATTGAACCC
8104568 CCTTTTTCTTCATTTTTTCTTTTTT
1 CCTTTTTCTTC-TTTTTT-TTTTTT
8104593 CCTTTTTCTT-TTTTTCTTTTTTCT
1 CCTTTTTCTTCTTTTT-TTTTTT-T
* *
8104617 TCTTTTTCTTCCTTTTTTTTT
1 CCTTTTTCTTCTTTTTTTTTT
8104638 CTGCTGGGCT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
23 10 0.25
24 16 0.40
25 14 0.35
ACGTcount: A:0.01, C:0.20, G:0.00, T:0.79
Consensus pattern (23 bp):
CCTTTTTCTTCTTTTTTTTTTTT
Found at i:8104929 original size:3 final size:3
Alignment explanation
Indices: 8104923--8104971 Score: 53
Period size: 3 Copynumber: 15.0 Consensus size: 3
8104913 TTTCTTTTTT
*
8104923 TTC TTC TTTC TTTC TTTC TTC TTC TTC TTC TTCC TTC TTC TTC CTC TTC
1 TTC TTC -TTC -TTC -TTC TTC TTC TTC TTC TT-C TTC TTC TTC TTC TTC
8104972 AAAACCGAGC
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
3 28 0.67
4 14 0.33
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:8104953 original size:16 final size:16
Alignment explanation
Indices: 8104914--8104970 Score: 62
Period size: 16 Copynumber: 3.5 Consensus size: 16
8104904 ATTTTTTTTT
*
8104914 TTCTT-TTTTTTCTTC
1 TTCTTCTTTCTTCTTC
8104929 TTTCTTTCTTTCTTCTTC
1 -TTC-TTCTTTCTTCTTC
*
8104947 TTCTTCTTCCTTCTTC
1 TTCTTCTTTCTTCTTC
*
8104963 TTCCTCTT
1 TTCTTCTT
8104971 CAAAACCGAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
16 22 0.61
17 5 0.14
18 9 0.25
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (16 bp):
TTCTTCTTTCTTCTTC
Found at i:8105378 original size:30 final size:30
Alignment explanation
Indices: 8105323--8105439 Score: 132
Period size: 30 Copynumber: 3.9 Consensus size: 30
8105313 TGTAATTTTT
8105323 AGAAAATTTA-GGGTTAAAATGAAATTTAA
1 AGAAAATTTAGGGGTTAAAATGAAATTTAA
* *
8105352 TGAAAATTTAGGGGTCT-AAGTGAAATTTAA
1 AGAAAATTTAGGGGT-TAAAATGAAATTTAA
* *
8105382 AGAAAGTTTAAGGGTTAAAATGAAATTT-A
1 AGAAAATTTAGGGGTTAAAATGAAATTTAA
* * *
8105411 GGAAAAGTTTAGGGGTCAAAATGCAATTT
1 AGAAAA-TTTAGGGGTTAAAATGAAATTT
8105440 TTATTTTTTA
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
29 15 0.21
30 57 0.78
31 1 0.01
ACGTcount: A:0.44, C:0.03, G:0.22, T:0.31
Consensus pattern (30 bp):
AGAAAATTTAGGGGTTAAAATGAAATTTAA
Found at i:8105439 original size:60 final size:59
Alignment explanation
Indices: 8105323--8105439 Score: 164
Period size: 60 Copynumber: 2.0 Consensus size: 59
8105313 TGTAATTTTT
* * *
8105323 AGAAAATTTAGGGTTAAAATGAAATTTAATGAAAATTTAGGGGTCTAAGTGAAATTTAA
1 AGAAAATTTAGGGTTAAAATGAAATTTAAGGAAAATTTAGGGGTCAAAATGAAATTTAA
* *
8105382 AGAAAGTTTAAGGGTTAAAATGAAATTT-AGGAAAAGTTTAGGGGTCAAAATGCAATTT
1 AGAAAATTT-AGGGTTAAAATGAAATTTAAGGAAAA-TTTAGGGGTCAAAATGAAATTT
8105440 TTATTTTTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
59 14 0.27
60 37 0.73
ACGTcount: A:0.44, C:0.03, G:0.22, T:0.31
Consensus pattern (59 bp):
AGAAAATTTAGGGTTAAAATGAAATTTAAGGAAAATTTAGGGGTCAAAATGAAATTTAA
Found at i:8105460 original size:14 final size:15
Alignment explanation
Indices: 8105435--8105469 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
8105425 GTCAAAATGC
*
8105435 AATTTTTATTTTTTA
1 AATTTTTATTTTTGA
8105450 AATTTTT-TTTTTGA
1 AATTTTTATTTTTGA
8105464 AATTTT
1 AATTTT
8105470 GAAAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
AATTTTTATTTTTGA
Found at i:8106620 original size:19 final size:19
Alignment explanation
Indices: 8106593--8106632 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
8106583 GTCTAAGTGT
*
8106593 ATAACTAGTATTACACCAC
1 ATAACTAGTACTACACCAC
*
8106612 ATAATTAGTACTACACCAC
1 ATAACTAGTACTACACCAC
8106631 AT
1 AT
8106633 TAAAGCATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.25, G:0.05, T:0.28
Consensus pattern (19 bp):
ATAACTAGTACTACACCAC
Found at i:8108146 original size:35 final size:35
Alignment explanation
Indices: 8107986--8108148 Score: 179
Period size: 35 Copynumber: 4.6 Consensus size: 35
8107976 TCCTCATTGA
** *
8107986 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
8108021 AATGCCATACCTACATTTCTTAACTCAGTATGGATTT
1 AATACCATACCTACATTTCACAACTCAGTATGGA--T
* * *
8108058 GATA--ATATCATACATTTCACAGCTCAGTATGGAT
1 AATACCATA-CCTACATTTCACAACTCAGTATGGAT
8108092 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
8108127 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
8108149 CTTTGCCATG
Statistics
Matches: 108, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
34 7 0.06
35 75 0.69
36 24 0.22
37 2 0.02
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:8114290 original size:31 final size:31
Alignment explanation
Indices: 8114254--8114315 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
8114244 GCTACAAAAC
8114254 TACTACAAGC-CTTCAACAAAACACAAAAATT
1 TACTACAA-CACTTCAACAAAACACAAAAATT
* * *
8114285 TACTACAACACTTCAATAAGACACACAAATT
1 TACTACAACACTTCAACAAAACACAAAAATT
8114316 GCCACAATCG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 1 0.04
31 26 0.96
ACGTcount: A:0.50, C:0.26, G:0.03, T:0.21
Consensus pattern (31 bp):
TACTACAACACTTCAACAAAACACAAAAATT
Found at i:8115903 original size:21 final size:21
Alignment explanation
Indices: 8115878--8115919 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8115868 TTAAGTTTAA
8115878 TAAACAATAAATGA-TAATTTT
1 TAAACAATAAAT-ATTAATTTT
*
8115899 TAAACCATAAATATTAATTTT
1 TAAACAATAAATATTAATTTT
8115920 ATTCTAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.40
Consensus pattern (21 bp):
TAAACAATAAATATTAATTTT
Found at i:8119818 original size:24 final size:24
Alignment explanation
Indices: 8119789--8119840 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
8119779 GATTACATAA
* *
8119789 ATTTTTAGATTTAA-AATGTTATTT
1 ATTTTTA-ATTAAATAATGTGATTT
8119813 ATTTTTAATTAAATAATGTGATTT
1 ATTTTTAATTAAATAATGTGATTT
8119837 ATTT
1 ATTT
8119841 GTGATATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.20
24 20 0.80
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (24 bp):
ATTTTTAATTAAATAATGTGATTT
Found at i:8127363 original size:11 final size:11
Alignment explanation
Indices: 8127343--8127372 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8127333 TTATATAAAG
8127343 CTTCCCTTTCC
1 CTTCCCTTTCC
*
8127354 CTTCCTTTTCC
1 CTTCCCTTTCC
8127365 CTTCCCTT
1 CTTCCCTT
8127373 GCTCTGCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (11 bp):
CTTCCCTTTCC
Found at i:8128828 original size:24 final size:23
Alignment explanation
Indices: 8128771--8128828 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 23
8128761 CAAGATTCAT
*
8128771 AATT-AATATAAATTATTTATAA
1 AATTAAATATAAAGTATTTATAA
*
8128793 AATTAACA-ATAAAGTATTTTTAA
1 AATTAA-ATATAAAGTATTTATAA
*
8128816 AGCTTAAATATAA
1 A-ATTAAATATAA
8128829 TAATAAAATC
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
22 4 0.14
23 16 0.55
24 9 0.31
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (23 bp):
AATTAAATATAAAGTATTTATAA
Found at i:8129345 original size:21 final size:20
Alignment explanation
Indices: 8129307--8129346 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
8129297 AAATAATATA
*
8129307 TAATATATTTTTTATATTAG
1 TAATATATTTTTAATATTAG
*
8129327 TAATGTATTTTTAACTATTA
1 TAATATATTTTTAA-TATTA
8129347 TTCTTTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (20 bp):
TAATATATTTTTAATATTAG
Found at i:8130579 original size:169 final size:168
Alignment explanation
Indices: 8130292--8130618 Score: 505
Period size: 169 Copynumber: 1.9 Consensus size: 168
8130282 AAATATTTAA
*
8130292 TTATAAAGTAAAATGCAAAAGATTATAGCAATTTAAACATGAAATAAGTAATAAGTGTCGATTGA
1 TTATAAAGTAAAATGCAAAAGATTATAGCAATTTAAACAAGAAATAAGTAATAAGTGTCGATTGA
* *
8130357 ATCTTAGTTTAATTGGTATAACTATTATTGTCAATATAGGAGGATGTATGTTTGAGTGCATTGAA
66 ATCTTAGTTTAATTGGTATAACTATTATTATCAATATAGGAGGACGTATGTTTGAGTGCATTGAA
*
8130422 TTACATTATCTTCCTATTTATGAATTAGAGCGGAACTAT
131 ATACATT-TCTTCCTATTTATGAATTAGAGCGGAACTAT
*
8130461 TTATGAAA-TAAAATGCAAAAGATTATAGCTATTTAAACAAGAAATAAGTAATAAGTGTCGATTG
1 TTAT-AAAGTAAAATGCAAAAGATTATAGCAATTTAAACAAGAAATAAGTAATAAGTGTCGATTG
* * * *
8130525 AGTCTT-GATTTAATTGGTTTGACTATTATTATTAATATAGGAGGACGTATGTTTGAGTGCATTG
65 AATCTTAG-TTTAATTGGTATAACTATTATTATCAATATAGGAGGACGTATGTTTGAGTGCATTG
* * *
8130589 AAATATATTTTTTTCTATTTATGAATTAGA
129 AAATACATTTCTTCCTATTTATGAATTAGA
8130619 AAGGAAGTAT
Statistics
Matches: 144, Mismatches: 12, Indels: 5
0.89 0.07 0.03
Matches are distributed among these distances:
168 20 0.14
169 121 0.84
170 3 0.02
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.38
Consensus pattern (168 bp):
TTATAAAGTAAAATGCAAAAGATTATAGCAATTTAAACAAGAAATAAGTAATAAGTGTCGATTGA
ATCTTAGTTTAATTGGTATAACTATTATTATCAATATAGGAGGACGTATGTTTGAGTGCATTGAA
ATACATTTCTTCCTATTTATGAATTAGAGCGGAACTAT
Found at i:8132489 original size:18 final size:18
Alignment explanation
Indices: 8132466--8132508 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
8132456 GATCAAGGTG
8132466 TAATTAATTTAAAATT-TT
1 TAATTAA-TTAAAATTATT
*
8132484 TAATTAATTAAATTTATT
1 TAATTAATTAAAATTATT
8132502 TAATTAA
1 TAATTAA
8132509 AAATATATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATTAATTAAAATTATT
Found at i:8135653 original size:16 final size:16
Alignment explanation
Indices: 8135620--8135652 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
8135610 ATTAAATAAT
8135620 AATTATATATATTTAA
1 AATTATATATATTTAA
*
8135636 AATTAT-TATTTTTAA
1 AATTATATATATTTAA
8135651 AA
1 AA
8135653 AATAAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
AATTATATATATTTAA
Found at i:8137728 original size:23 final size:25
Alignment explanation
Indices: 8137686--8137745 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 25
8137676 ATAATAATAC
8137686 TAATATAATAAATGTAATAGTGAT-AA
1 TAATATAATAAATG-AATAGT-ATGAA
8137712 TAATATAAT-AATG-ATAGTATGAA
1 TAATATAATAAATGAATAGTATGAA
8137735 TAATAT-ATAAA
1 TAATATAATAAA
8137746 AAATAATAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
22 4 0.12
23 15 0.47
25 4 0.12
26 9 0.28
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35
Consensus pattern (25 bp):
TAATATAATAAATGAATAGTATGAA
Found at i:8137737 original size:26 final size:26
Alignment explanation
Indices: 8137681--8137770 Score: 78
Period size: 26 Copynumber: 3.4 Consensus size: 26
8137671 TAGCAATAAT
* *
8137681 AATACTAATATAATAAATG-TAATAGTG
1 AATAATAATATAAT-AATGATAGTA-TG
8137708 -ATAATAATATAATAATGATAGTATG
1 AATAATAATATAATAATGATAGTATG
* *
8137733 AATAAT-ATATAAAAAATAATAGTAATG
1 AATAATAATAT-AATAATGATAGT-ATG
8137760 ATATAATAATA
1 A-ATAATAATA
8137771 ACAATATTAA
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
25 10 0.19
26 31 0.58
27 4 0.08
28 5 0.09
29 3 0.06
ACGTcount: A:0.57, C:0.01, G:0.09, T:0.33
Consensus pattern (26 bp):
AATAATAATATAATAATGATAGTATG
Found at i:8137776 original size:23 final size:20
Alignment explanation
Indices: 8137735--8137789 Score: 56
Period size: 23 Copynumber: 2.6 Consensus size: 20
8137725 ATAGTATGAA
*
8137735 TAATATATAAAAAATAATAG
1 TAATATATAAAAAACAATAG
*
8137755 TAATGATATAATAATAACAATAT
1 TAAT-ATATAA-AA-AACAATAG
*
8137778 TAAAATATAAAA
1 TAATATATAAAA
8137790 GCCACTATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 4 0.14
21 8 0.28
22 8 0.28
23 9 0.31
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.31
Consensus pattern (20 bp):
TAATATATAAAAAACAATAG
Found at i:8137878 original size:3 final size:3
Alignment explanation
Indices: 8137870--8137921 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
8137860 ATACACTAAC
* * ** *
8137870 ATA ATA ATA ATT ATA ATA ATA CTA GCA ATA ATA ATA ATTA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA
8137916 ATA ATA
1 ATA ATA
8137922 TATACACAAC
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
3 37 0.95
4 2 0.05
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:8137917 original size:16 final size:16
Alignment explanation
Indices: 8137882--8137921 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
8137872 AATAATAATT
8137882 ATAATAAT-ACTAGCA
1 ATAATAATAACTAGCA
* *
8137897 ATAATAATAATTAGTA
1 ATAATAATAACTAGCA
8137913 ATAATAATA
1 ATAATAATA
8137922 TATACACAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (16 bp):
ATAATAATAACTAGCA
Found at i:8137984 original size:33 final size:34
Alignment explanation
Indices: 8137935--8137999 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
8137925 ACACAACATG
*
8137935 GTATTTAAAAAAATAAAAATAATAT-ATATAATA
1 GTATTTAAAAAAATAAAAATAAGATGATATAATA
* * *
8137968 GTATTTAAGAATATAAACATAAGATGATATAA
1 GTATTTAAAAAAATAAAAATAAGATGATATAA
8138000 AATACATACA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
33 21 0.78
34 6 0.22
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (34 bp):
GTATTTAAAAAAATAAAAATAAGATGATATAATA
Found at i:8138070 original size:23 final size:23
Alignment explanation
Indices: 8137947--8138088 Score: 82
Period size: 23 Copynumber: 6.1 Consensus size: 23
8137937 ATTTAAAAAA
*
8137947 ATAAAAATAATATATATAATAGTAT
1 ATAAAAAT-ATATACATAATA-TAT
* * * *
8137972 TTAAGAATATAAACATAAGATGAT
1 ATAAAAATATATACATAATAT-AT
*
8137996 AT-AAAATACATACATGGAATA-AT
1 ATAAAAATATATACAT--AATATAT
**
8138019 ATAAGAAATATATA-ACTAATGGCAT
1 ATAA-AAATATATACA-TAAT-ATAT
8138044 -TAAAAATATATACATAATATAT
1 ATAAAAATATATACATAATATAT
*
8138066 AT-AAAATACAT--ATAATATAT
1 ATAAAAATATATACATAATATAT
8138086 ATA
1 ATA
8138089 CGTATTAGAA
Statistics
Matches: 91, Mismatches: 15, Indels: 26
0.69 0.11 0.20
Matches are distributed among these distances:
20 11 0.12
22 10 0.11
23 32 0.35
24 18 0.20
25 20 0.22
ACGTcount: A:0.57, C:0.05, G:0.06, T:0.32
Consensus pattern (23 bp):
ATAAAAATATATACATAATATAT
Found at i:8138073 original size:11 final size:11
Alignment explanation
Indices: 8138046--8138088 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
8138036 AATGGCATTA
*
8138046 AAAATATATAC
1 AAAATATATAT
*
8138057 ATAATATATAT
1 AAAATATATAT
*
8138068 AAAATACATAT
1 AAAATATATAT
*
8138079 AATATATATA
1 AAAATATATA
8138089 CGTATTAGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (11 bp):
AAAATATATAT
Found at i:8140659 original size:19 final size:19
Alignment explanation
Indices: 8140631--8140667 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8140621 TGTTCATCAA
8140631 AATTTCTTCAAAGATTTTC
1 AATTTCTTCAAAGATTTTC
*
8140650 AATTTGTTCAAAGATTTT
1 AATTTCTTCAAAGATTTT
8140668 TTTGAGATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.49
Consensus pattern (19 bp):
AATTTCTTCAAAGATTTTC
Found at i:8141465 original size:15 final size:15
Alignment explanation
Indices: 8141445--8141481 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
8141435 GTTCAATTTT
8141445 TAGTGGTGTCAAAAA
1 TAGTGGTGTCAAAAA
*
8141460 TAGTGGTGTCGAAAA
1 TAGTGGTGTCAAAAA
8141475 TAGTGGT
1 TAGTGGT
8141482 TCGAGGTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.32, C:0.05, G:0.32, T:0.30
Consensus pattern (15 bp):
TAGTGGTGTCAAAAA
Found at i:8143072 original size:21 final size:21
Alignment explanation
Indices: 8143048--8143244 Score: 145
Period size: 21 Copynumber: 9.6 Consensus size: 21
8143038 GTGTTTTACT
8143048 TTCTGTTTAGCTCTTACGAGC
1 TTCTGTTTAGCTCTTACGAGC
* * *
8143069 TTCTGTTTAACTCTTATGAGT
1 TTCTGTTTAGCTCTTACGAGC
* *
8143090 TTTTGTTCAGCTCTTACGAGC
1 TTCTGTTTAGCTCTTACGAGC
* *
8143111 TTCTGTTCTA-CTCTTAAGAGT
1 TTCTGTT-TAGCTCTTACGAGC
* * *
8143132 TTCTGTTAAGTTCTCACGAGC
1 TTCTGTTTAGCTCTTACGAGC
* *
8143153 TTCTGTTCAGAT-TT-CGAGC
1 TTCTGTTTAGCTCTTACGAGC
*
8143172 TTCTTTTTAGCT-TT-CGAGC
1 TTCTGTTTAGCTCTTACGAGC
* * * * * *
8143191 TTTTGTTCAAC-CATTATGGGT
1 TTCTGTTTAGCTC-TTACGAGC
*
8143212 TTCTGTTTAGCTCTCACGAGC
1 TTCTGTTTAGCTCTTACGAGC
*
8143233 TTCTGTTCAGCT
1 TTCTGTTTAGCT
8143245 TTCTGGCTTT
Statistics
Matches: 132, Mismatches: 38, Indels: 12
0.73 0.21 0.07
Matches are distributed among these distances:
19 28 0.21
20 4 0.03
21 98 0.74
22 2 0.02
ACGTcount: A:0.16, C:0.21, G:0.18, T:0.45
Consensus pattern (21 bp):
TTCTGTTTAGCTCTTACGAGC
Found at i:8143172 original size:19 final size:19
Alignment explanation
Indices: 8143148--8143199 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
8143138 TAAGTTCTCA
8143148 CGAGCTTCTGTTCAGATTT
1 CGAGCTTCTGTTCAGATTT
* * *
8143167 CGAGCTTCTTTTTAGCTTT
1 CGAGCTTCTGTTCAGATTT
*
8143186 CGAGCTTTTGTTCA
1 CGAGCTTCTGTTCA
8143200 ACCATTATGG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.13, C:0.21, G:0.19, T:0.46
Consensus pattern (19 bp):
CGAGCTTCTGTTCAGATTT
Found at i:8143241 original size:42 final size:42
Alignment explanation
Indices: 8143047--8143241 Score: 195
Period size: 42 Copynumber: 4.7 Consensus size: 42
8143037 CGTGTTTTAC
* *
8143047 TTTCTGTTTAGCTCTTACGAGCTTCTGTTTAACTCTTATGAG
1 TTTCTGTTTAGCTCTCACGAGCTTCTGTTCAACTCTTATGAG
* * * * *
8143089 TTTTTGTTCAGCTCTTACGAGCTTCTGTTCTACTCTTAAGAG
1 TTTCTGTTTAGCTCTCACGAGCTTCTGTTCAACTCTTATGAG
* * *
8143131 TTTCTGTTAAGTTCTCACGAGCTTCTGTTCAGA-T-TT-CGAG
1 TTTCTGTTTAGCTCTCACGAGCTTCTGTTCA-ACTCTTATGAG
* * * * *
8143171 CTTCTTTTTAGCT-T-TCGAGCTTTTGTTCAAC-CATTATGGG
1 TTTCTGTTTAGCTCTCACGAGCTTCTGTTCAACTC-TTATGAG
8143211 TTTCTGTTTAGCTCTCACGAGCTTCTGTTCA
1 TTTCTGTTTAGCTCTCACGAGCTTCTGTTCA
8143242 GCTTTCTGGC
Statistics
Matches: 123, Mismatches: 23, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
37 1 0.01
38 13 0.11
39 3 0.02
40 25 0.20
41 3 0.02
42 77 0.63
43 1 0.01
ACGTcount: A:0.16, C:0.21, G:0.17, T:0.46
Consensus pattern (42 bp):
TTTCTGTTTAGCTCTCACGAGCTTCTGTTCAACTCTTATGAG
Found at i:8149763 original size:41 final size:40
Alignment explanation
Indices: 8149713--8149791 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 40
8149703 TATGGGATAT
**
8149713 TGAATATTGTTTTGAATACTGAATTGAACTGTGAAAATTAC
1 TGAATATTGTTACGAATACTGAATTGAACTGT-AAAATTAC
* *
8149754 TGAATATTGTTACGTATACTGCATTGAACTGTAAAATT
1 TGAATATTGTTACGAATACTGAATTGAACTGTAAAATT
8149792 TTTGATGAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
40 6 0.18
41 28 0.82
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.39
Consensus pattern (40 bp):
TGAATATTGTTACGAATACTGAATTGAACTGTAAAATTAC
Found at i:8150054 original size:45 final size:46
Alignment explanation
Indices: 8150004--8150114 Score: 172
Period size: 45 Copynumber: 2.5 Consensus size: 46
8149994 CGACTACTGT
*
8150004 TACTGTTACCGTTACTGTTACCA-ATTCGACACTTTGTGTGTCGAA
1 TACTGTTACCGTTACTGTTACCAGATTCAACACTTTGTGTGTCGAA
* *
8150049 TACTGTTACCGTTACTGTTA-TAGATTCAACACTTTGTGTGTTGAA
1 TACTGTTACCGTTACTGTTACCAGATTCAACACTTTGTGTGTCGAA
*
8150094 TACTGTTACTGTTACTGTTAC
1 TACTGTTACCGTTACTGTTAC
8150115 TGCTACTGTT
Statistics
Matches: 60, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
44 1 0.02
45 59 0.98
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.41
Consensus pattern (46 bp):
TACTGTTACCGTTACTGTTACCAGATTCAACACTTTGTGTGTCGAA
Done.