Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 230 of 344
Found at i:76256923 original size:42 final size:43
Alignment explanation
Indices: 76256823--76256979 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 43
76256813 ATGGAGTACA
* *
76256823 ATGCCTACGTCCCAGAC-GTGGTCTTACATGTAATTC-AATATCG
1 ATGCCTATGTCCCAGACAG-GGTCTTACATGTAAATCAAATA-CG
* *
76256866 ATGGCTCTGTCCCAGACAGGGTCTTACATG-AAATCAAATACG
1 ATGCCTATGTCCCAGACAGGGTCTTACATGTAAATCAAATACG
* * *
76256908 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CG
1 ATGCCTATGTCCCAGACAGGGTCTTACATGTAAA--TCAAATACG
* * * *
76256952 AGGCCTGTGTTCCAGACATGGTCTTACA
1 ATGCCTATGTCCCAGACAGGGTCTTACA
76256980 CGATATTTCA
Statistics
Matches: 96, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
42 31 0.32
43 32 0.33
44 27 0.28
45 6 0.06
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (43 bp):
ATGCCTATGTCCCAGACAGGGTCTTACATGTAAATCAAATACG
Found at i:76256971 original size:44 final size:43
Alignment explanation
Indices: 76256825--76256981 Score: 160
Period size: 42 Copynumber: 3.7 Consensus size: 43
76256815 GGAGTACAAT
* * *
76256825 GCCTACGTCCCAGACGTGGTCTTACATGT-AATTCAATATCGATG
1 GCCTATGTCCCAGACATGGTCTTACACGTAAATTCAA-ATCGA-G
* * * *
76256869 G-CTCTGTCCCAGACAGGGTCTTACATG-AAA-TCAAATACGAT
1 GCCTATGTCCCAGACATGGTCTTACACGTAAATTCAAAT-CGAG
*
76256910 GCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAATCGAG
1 GCCTATGTCCCAGACATGGTCTTACACGTAAAT-TCAAATCGAG
* *
76256954 GCCTGTGTTCCAGACATGGTCTTACACG
1 GCCTATGTCCCAGACATGGTCTTACACG
76256982 ATATTTCAGC
Statistics
Matches: 94, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
41 3 0.03
42 29 0.31
43 27 0.29
44 29 0.31
45 6 0.06
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (43 bp):
GCCTATGTCCCAGACATGGTCTTACACGTAAATTCAAATCGAG
Found at i:76259202 original size:22 final size:24
Alignment explanation
Indices: 76259160--76259211 Score: 81
Period size: 22 Copynumber: 2.2 Consensus size: 24
76259150 AAAAGCTTTC
*
76259160 GTAACAAACTCGGTTTTAAAGTTA
1 GTAATAAACTCGGTTTTAAAGTTA
76259184 GTAATAAACT-GG-TTTAAAGTTA
1 GTAATAAACTCGGTTTTAAAGTTA
76259206 GTAATA
1 GTAATA
76259212 TTTTACCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 16 0.59
23 2 0.07
24 9 0.33
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.35
Consensus pattern (24 bp):
GTAATAAACTCGGTTTTAAAGTTA
Found at i:76266895 original size:43 final size:43
Alignment explanation
Indices: 76266847--76266949 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
76266837 TTGGTTTTCA
76266847 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
76266890 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
76266933 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
76266950 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:76266966 original size:29 final size:29
Alignment explanation
Indices: 76266931--76267004 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
76266921 GTTGTGAGAT
* *
76266931 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
76266960 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
76266989 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76267005 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:76267399 original size:40 final size:39
Alignment explanation
Indices: 76267354--76267458 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
76267344 AAGTGACCAT
* *
76267354 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGGCTAAG-TCCGAAGGCATTGGTGCGAGATACTAA
* *
76267394 TTCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCC-GAAGGCATTGGTGCGAGATACTAA
*
76267433 ATCTGGGCTAAGTCCCGAAGAGCATT
1 ATCCGGGCTAAGT-CCGAAG-GCATT
76267459 CATGCTAGTG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
38 2 0.04
39 32 0.58
40 14 0.25
41 7 0.13
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCGAAGGCATTGGTGCGAGATACTAA
Found at i:76267423 original size:39 final size:40
Alignment explanation
Indices: 76267320--76267532 Score: 127
Period size: 40 Copynumber: 5.3 Consensus size: 40
76267310 TGATGTTCGA
* * * *
76267320 GCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGG
1 GCTAAGTCCCGAAGGCATTGGTGCGAGA-T-ACTAAATCCGG
* * *
76267360 ACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCGG
1 GCTAAG-TCCCGAAGGCATTGGTGCGAGATACTAAATCCGG
* * *
76267400 GCTAAG-CCTGAAGGCATTGGTGCGAGTTACTAAATCTGG
1 GCTAAGTCCCGAAGGCATTGGTGCGAGATACTAAATCCGG
** * **
76267439 GCTAAGTCCCGAAGAGCATTCATGCTAG-TGA-TGTATCCGG
1 GCTAAGTCCCGAAG-GCATTGGTGCGAGAT-ACTAAATCCGG
** * *
76267479 GCTAAGTCCCGAAGAGCATTCATGCTAG-TGA-TATATCCGG
1 GCTAAGTCCCGAAG-GCATTGGTGCGAGAT-ACTAAATCCGG
*
76267519 GCTAGGTCCCGAAG
1 GCTAAGTCCCGAAG
76267533 AGCAATCATG
Statistics
Matches: 146, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
39 33 0.23
40 91 0.62
41 21 0.14
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTGGTGCGAGATACTAAATCCGG
Found at i:76267478 original size:79 final size:80
Alignment explanation
Indices: 76267395--76267549 Score: 197
Period size: 80 Copynumber: 1.9 Consensus size: 80
76267385 AGATACTAAT
* ** * * *
76267395 TCCGGGCTAAG-CCTGAAG-GCATTGGTGCGAGTTACTAAATCTGGGCTAAGTCCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCGAGTGA-TAAATCCGGGCTAAGTCCCGAAGAGCAA
76267458 TCATGCTAGTGATGTA
65 TCATGCTAGTGATGTA
* * *
76267474 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAGGTCCCGAAGAGCAAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCGAGTGATAAATCCGGGCTAAGTCCCGAAGAGCAAT
*
76267539 CATGCTGGTGA
66 CATGCTAGTGA
76267550 CGTGTATTCG
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
79 11 0.17
80 41 0.64
81 12 0.19
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCGAGTGATAAATCCGGGCTAAGTCCCGAAGAGCAAT
CATGCTAGTGATGTA
Found at i:76267483 original size:40 final size:40
Alignment explanation
Indices: 76267437--76267549 Score: 190
Period size: 40 Copynumber: 2.8 Consensus size: 40
76267427 TACTAAATCT
*
76267437 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCC
76267477 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCC
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCC
* * *
76267517 GGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
76267550 CGTGTATTCG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 69 1.00
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCC
Found at i:76270980 original size:47 final size:47
Alignment explanation
Indices: 76270914--76271585 Score: 1074
Period size: 47 Copynumber: 14.1 Consensus size: 47
76270904 GAAATGATAG
*
76270914 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76270961 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
76271010 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
76271059 TAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
76271106 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76271153 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
76271202 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
76271249 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
76271296 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76271343 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
76271392 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
76271441 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
76271488 TAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
76271535 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76271582 TAAG
1 TAAG
76271586 TCCCGAAGGG
Statistics
Matches: 588, Mismatches: 31, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
47 352 0.60
49 236 0.40
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:76271099 original size:96 final size:96
Alignment explanation
Indices: 76270914--76271585 Score: 1058
Period size: 96 Copynumber: 7.0 Consensus size: 96
76270904 GAAATGATAG
*
76270914 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
76270977 ATGTGATGAATGTGAAAGTGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTG--TATATATGTGA
76271010 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
76271075 ATGTGATAAATGTGAAAGTGTATATACGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
*
76271106 TAAGGCCTAATGGCCGATGTGATGAACGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
76271169 ATGTGATGAATGTGAAAGTGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTG--TATATATGTGA
*
76271202 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
76271265 ATGTGATGAATGTGAAAGTGTATATATGAGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
*
76271296 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
76271359 ATGTGATGAATGTGAAAGTGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
76271392 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
76271457 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * *
76271488 TAAGGCCTAATGGCCGATGTAATGAATGTGAAA--GTATATATATGTGACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * *
76271551 ACGTGATGGATGTGAAAGTGTATAAATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
76271582 TAAG
1 TAAG
76271586 TCCCGAAGGG
Statistics
Matches: 544, Mismatches: 22, Indels: 22
0.93 0.04 0.04
Matches are distributed among these distances:
94 200 0.37
96 252 0.46
98 92 0.17
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:76271210 original size:143 final size:141
Alignment explanation
Indices: 76270914--76271585 Score: 1065
Period size: 143 Copynumber: 4.7 Consensus size: 141
76270904 GAAATGATAG
*
76270914 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
76270979 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
76271044 TGTATATATATGTGA
129 TG--TATATATGTGA
* *
76271059 TAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
76271124 GTGATGAACGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
76271189 TATATATATGTGA
131 --TATATATGTGA
*
76271202 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* *
76271267 GTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
76271332 TATATACGTGA
131 TATATATGTGA
*
76271343 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
76271408 ATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAA
64 ATGTGATGAATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
76271473 AGTGTATATATGTGA
127 AGTGTATATATGTGA
* * * * * * * *
76271488 TAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTATATATATGTGACAGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * *
76271553 GTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 GTGATGAATGTGAAAGTATATATATGTGATAAG
76271586 TCCCGAAGGG
Statistics
Matches: 497, Mismatches: 26, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
141 61 0.12
143 269 0.54
145 167 0.34
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (141 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGA
Found at i:76271760 original size:37 final size:37
Alignment explanation
Indices: 76271704--76271782 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
76271694 CCGAGCTCTA
* * *
76271704 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
76271741 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
76271778 AAGAC
1 AAGAC
76271783 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:76273986 original size:5 final size:5
Alignment explanation
Indices: 76273976--76274000 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
76273966 AAATAATAAA
76273976 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
76274001 GTAAGGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:76280779 original size:27 final size:27
Alignment explanation
Indices: 76280741--76280868 Score: 152
Period size: 27 Copynumber: 4.7 Consensus size: 27
76280731 TTAGCTTACC
*
76280741 AAATTACTAAAATA-CCCTCGATTAGCA
1 AAATTACCAAAATACCCCT-GATTAGCA
76280768 AAATTACCAAAATA-CCCTCGATTAGCA
1 AAATTACCAAAATACCCCT-GATTAGCA
* * *
76280795 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTAGCA
* * *
76280822 AAATTACCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCCTGATTAGCA
*
76280849 AAATTACCGAAATACCCCTG
1 AAATTACCAAAATACCCCTG
76280869 TAAGGTAGAA
Statistics
Matches: 92, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 88 0.96
28 4 0.04
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTAGCA
Found at i:76280880 original size:27 final size:27
Alignment explanation
Indices: 76280850--76281215 Score: 405
Period size: 27 Copynumber: 13.6 Consensus size: 27
76280840 TAATTTGTAA
76280850 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
76280877 AATTATCGAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAAGGTAG
** * *
76280904 AATTACTAAAATACTCCTGTAAGATAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
76280931 AATTACCGAAATACCCTTGT-AGCGTAG
1 AATTACCGAAATACCCCTGTAAG-GTAG
** *
76280958 AATTAGTGAAATACTCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
76280985 AATTACTGAAATACCCCTGT-AGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* ** *
76281011 AATGACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
76281038 AATTACCGAAATACCCCTGTAGGGCAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
76281065 AATTACTGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
76281092 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
** *
76281119 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
76281146 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * * *
76281173 AAATACTGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAAGGTAG
76281200 AATTACC-AAGATACCC
1 AATTACCGAA-ATACCC
76281216 TGTTGGGGTA
Statistics
Matches: 287, Mismatches: 48, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
26 27 0.09
27 258 0.90
28 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAAGGTAG
Found at i:76280881 original size:54 final size:54
Alignment explanation
Indices: 76280850--76281232 Score: 493
Period size: 54 Copynumber: 7.1 Consensus size: 54
76280840 TAATTTGTAA
* * *
76280850 AATTACCGAAATACCCCTGTAAGGTAGAATTATCGAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * *
76280904 AATTACTAAAATACTCCTGTAAGATAGAATTACCGAAATACCCTTGTAGCGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
76280958 AATTAGTGAAATACTCCTGTAAGGTAGAATTACTGAAATACCCCTGTA-GGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
76281011 AATGACTAAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGCAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
76281065 AATTACTGAAATACCCCTATAAGGTAGAATTATCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
76281119 AATTATTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * *
76281173 AAATACTGAAATACCCCTGTAGGGTAAAATTACC-AAGATA-CCCTGTTGGGGTAA
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAA-ATACCCCTG-TAGGGTAG
76281227 AATTAC
1 AATTAC
76281233 CGTTTTACCC
Statistics
Matches: 289, Mismatches: 37, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
53 52 0.18
54 237 0.82
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:76281827 original size:27 final size:26
Alignment explanation
Indices: 76281797--76281933 Score: 139
Period size: 27 Copynumber: 5.1 Consensus size: 26
76281787 ATTCTGTTAA
* *
76281797 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
* *
76281824 GTGGCTCTGTCACAATATTCTATTTCTG
1 GTGGCTCTGCCACAATA-TCT-GTTCTG
* * *
76281852 GTGGCTATGCTACAAATATCTGTTTTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
76281879 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* * *
76281906 GTGACTCTGTCACAATATTTGTTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
76281932 GT
1 GT
76281934 AGCCATGCTG
Statistics
Matches: 91, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
26 15 0.16
27 51 0.56
28 21 0.23
29 4 0.04
ACGTcount: A:0.18, C:0.20, G:0.21, T:0.40
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:76281890 original size:82 final size:79
Alignment explanation
Indices: 76281797--76281953 Score: 208
Period size: 82 Copynumber: 1.9 Consensus size: 79
76281787 ATTCTGTTAA
* * * * * *
76281797 GTGGCTTTGCCACATTATCTG-ATTCTGGTGGCTCTGTCACAATATTCTATTTCTGGTGGCTATG
1 GTGGCTCTGCCACAATATCTGTA-TCTGGTGACTCTGTCACAATATT-T-GTTCTGGTAGCCATG
76281861 CTACAAATATCTGTTTTG
63 CTACAAAT-TCTGTTTTG
*
76281879 GTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATTTGTTCTGGTAGCCATGCTG
1 GTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATTTGTTCTGGTAGCCATGCTA
76281944 CAAATTCTGT
66 CAAATTCTGT
76281954 GGTGTGTAGC
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
79 5 0.07
80 19 0.28
81 1 0.01
82 41 0.61
83 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (79 bp):
GTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATTTGTTCTGGTAGCCATGCTA
CAAATTCTGTTTTG
Found at i:76282128 original size:6 final size:6
Alignment explanation
Indices: 76282119--76282193 Score: 55
Period size: 6 Copynumber: 12.3 Consensus size: 6
76282109 CTGTCACCTA
* * * *
76282119 ATTCTG ATTCTA ATTTTG ATTATG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
76282168 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
76282194 AATGTTTCTT
Statistics
Matches: 53, Mismatches: 11, Indels: 10
0.72 0.15 0.14
Matches are distributed among these distances:
5 2 0.04
6 46 0.87
7 4 0.08
8 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.13, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:76282129 original size:25 final size:25
Alignment explanation
Indices: 76282050--76282111 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
76282040 TTGCATTCAC
* * *
76282050 ATTCTGATTTTGATCCTGTTACCTG
1 ATTCTGATTCTGATCCTGTCACCTA
* *
76282075 ATACTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATCCTGTCACCTA
76282100 ATTCTGATTCTG
1 ATTCTGATTCTG
76282112 TCACCTAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.45
Consensus pattern (25 bp):
ATTCTGATTCTGATCCTGTCACCTA
Found at i:76282151 original size:37 final size:37
Alignment explanation
Indices: 76282104--76282184 Score: 117
Period size: 37 Copynumber: 2.2 Consensus size: 37
76282094 CACCTAATTC
* *
76282104 TGATTCTGTCACCTAATTCTGATTCTAATTTTGATTA
1 TGATTCTGTCACCTAATTCTGATTCTAATTCTCATTA
* * *
76282141 TGATTCTGTCACCTGATTCTGATTCTGATTCTCATTT
1 TGATTCTGTCACCTAATTCTGATTCTAATTCTCATTA
76282178 TGATTCT
1 TGATTCT
76282185 AGTTCTGATA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.49
Consensus pattern (37 bp):
TGATTCTGTCACCTAATTCTGATTCTAATTCTCATTA
Found at i:76282163 original size:19 final size:19
Alignment explanation
Indices: 76282078--76282167 Score: 103
Period size: 19 Copynumber: 4.8 Consensus size: 19
76282068 TTACCTGATA
76282078 CTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
*
76282097 CTAATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
* * *
76282116 CTAATTCTGATTC--TAATT
1 CTGATTCTGATTCTGTCA-C
* *
76282134 TTGATTATGATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
76282153 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
76282168 ATTCTCATTT
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
17 2 0.03
18 10 0.17
19 44 0.76
20 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.13, T:0.46
Consensus pattern (19 bp):
CTGATTCTGATTCTGTCAC
Found at i:76284302 original size:27 final size:27
Alignment explanation
Indices: 76284205--76284359 Score: 136
Period size: 27 Copynumber: 5.7 Consensus size: 27
76284195 TTAGTTTACC
* * * *
76284205 AAATTACTAAAATA-GCCTCGATTAGCA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * *
76284232 AAATTACCAAAATA-CCTTCGATTAGAA
1 AAATTACCAAAATACCCCT-GATTTGTA
*
76284259 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
76284286 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* *** *
76284313 AAACTATTGAAATACCCCTG-TATGGTA
1 AAATTACCAAAATACCCCTGAT-TTGTA
*
76284340 GAATTACCAAAATACCCCTG
1 AAATTACCAAAATACCCCTG
76284360 TAGGGTGGAA
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 103 0.96
28 3 0.03
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.27
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:76284360 original size:27 final size:27
Alignment explanation
Indices: 76284321--76284698 Score: 407
Period size: 27 Copynumber: 14.0 Consensus size: 27
76284311 TAAAACTATT
*
76284321 GAAATACCCCTGTATGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
76284348 AAAATACCCCTGTAGGGTGGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
76284375 GAAATACTCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
76284402 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * **
76284429 GAAATACTCCTATAAAGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * * *
76284456 AAAATACCCCTATAAGGTAGAATGACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
76284483 GAAATACCCCTATAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
76284510 AAAATACCCCTTTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
76284537 GAAATACCCCTGTAAGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
76284564 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
76284591 AAAATACCCATGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
76284618 GAAATACCCTTGTAGGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* **
76284645 GAAATACCCCTATAGAATAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
76284672 GAGATA-CCCTCGTCGGGTAAAATTACC
1 GAAATACCCCT-GTAGGGTAGAATTACC
76284699 ATTTTGCCCT
Statistics
Matches: 290, Mismatches: 60, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 4 0.01
27 286 0.99
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:76284372 original size:81 final size:81
Alignment explanation
Indices: 76284260--76284698 Score: 443
Period size: 81 Copynumber: 5.4 Consensus size: 81
76284250 CGATTAGAAA
** * * ** * * **
76284260 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTG-ATTTGTAAAACTATTGA
1 AATTACCAAAATACCCCT-GTAGGGTAGAATTACCGAAATACCCCTGTA-AGGTAGAATTACCGA
* *
76284323 AATACCCCTGTATGGTAG
64 AATACCCCTATAGGGTAG
* * *
76284341 AATTACCAAAATACCCCTGTAGGGTGGAATTACTGAAATACTCCTGTAAGGTAGAATTACCGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAA
* *
76284406 TACCCTTGTAGGGTAG
66 TACCCCTATAGGGTAG
** * * ** * * * *
76284422 AATTACTGAAATACTCCTATAAAGTAGAATTACCAAAATACCCCTATAAGGTAGAATGACTGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAA
*
76284487 TACCCCTATAAGGTAG
66 TACCCCTATAGGGTAG
* * *
76284503 AATTACCAAAATACCCCTTTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTATCGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAA
76284568 TACCCCTATAGGGTAG
66 TACCCCTATAGGGTAG
* * * * * *
76284584 AATTACTAAAATACCCATGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAA
**
76284649 TACCCCTATAGAATAG
66 TACCCCTATAGGGTAG
* * * *
76284665 AATTACCGAGATA-CCCTCGTCGGGTAAAATTACC
1 AATTACCAAAATACCCCT-GTAGGGTAGAATTACC
76284699 ATTTTGCCCT
Statistics
Matches: 294, Mismatches: 61, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
80 5 0.02
81 288 0.98
82 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAA
TACCCCTATAGGGTAG
Found at i:76284378 original size:54 final size:54
Alignment explanation
Indices: 76284287--76284655 Score: 479
Period size: 54 Copynumber: 6.8 Consensus size: 54
76284277 TGGTTTGTAA
** * * * *
76284287 AATTACCAAAATACCCCTG-ATTTGTAAAACTATTGAAATACCCCTGTATGGTAG
1 AATTACCAAAATACCCCTGTA-GGGTAGAATTACTGAAATACCCCTGTAAGGTAG
* *
76284341 AATTACCAAAATACCCCTGTAGGGTGGAATTACTGAAATACTCCTGTAAGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
* * * * *
76284395 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACTCCTATAAAGTAG
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
* * * *
76284449 AATTACCAAAATACCCCTATAAGGTAGAATGACTGAAATACCCCTATAAGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
*
76284503 AATTACCAAAATACCCCTTTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
* * * * * *
76284557 AATTATCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCATGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
* * *
76284611 AATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCT
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCT
76284656 ATAGAATAGA
Statistics
Matches: 278, Mismatches: 36, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
54 277 1.00
55 1 0.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
Found at i:76285315 original size:28 final size:28
Alignment explanation
Indices: 76285279--76285398 Score: 99
Period size: 27 Copynumber: 4.4 Consensus size: 28
76285269 TACTACATTA
*
76285279 TCTGATTCTGGTGGCTCTGTCACAATAT
1 TCTGATTCTGGTGGCTCTGCCACAATAT
* *
76285307 TCTGTTTCTGGTGGCTATGCCACAA-AT
1 TCTGATTCTGGTGGCTCTGCCACAATAT
* * *
76285334 ATAT-ATTCTGGTGGCTTTGCCACAGTA-
1 -TCTGATTCTGGTGGCTCTGCCACAATAT
* **
76285361 TCTG-TATCTGGTGACTCTATCACAATAT
1 TCTGAT-TCTGGTGGCTCTGCCACAATAT
76285389 T-TG-TTCTGGT
1 TCTGATTCTGGT
76285399 AGCCATGCTG
Statistics
Matches: 74, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
26 9 0.12
27 39 0.53
28 26 0.35
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (28 bp):
TCTGATTCTGGTGGCTCTGCCACAATAT
Found at i:76285370 original size:27 final size:27
Alignment explanation
Indices: 76285262--76285373 Score: 95
Period size: 27 Copynumber: 4.1 Consensus size: 27
76285252 ATTCTATTAA
* *
76285262 GTGGCTTTACTACATTATCTG-ATTCTG
1 GTGGCTTTGCCACA-TATCTGTATTCTG
* *
76285289 GTGGCTCTGTCACAATATTCTGT-TTCTG
1 GTGGCTTTGCCAC-ATA-TCTGTATTCTG
* * * *
76285317 GTGGCTATGCCACAAATATATATTCTG
1 GTGGCTTTGCCACATATCTGTATTCTG
76285344 GTGGCTTTGCCACAGTATCTGTA-TCTG
1 GTGGCTTTGCCACA-TATCTGTATTCTG
76285371 GTG
1 GTG
76285374 ACTCTATCAC
Statistics
Matches: 67, Mismatches: 13, Indels: 10
0.74 0.14 0.11
Matches are distributed among these distances:
26 3 0.04
27 38 0.57
28 26 0.39
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (27 bp):
GTGGCTTTGCCACATATCTGTATTCTG
Found at i:76285546 original size:25 final size:25
Alignment explanation
Indices: 76285518--76285579 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
76285508 CATTCACATT
* *
76285518 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTTTGATTCTGTCACCTAATA
*
76285543 CTGATTTTGATTCTGTCACCTAATT
1 CTGATTTTGATTCTGTCACCTAATA
*
76285568 CTGATTCTGATT
1 CTGATTTTGATT
76285580 TTGATTATGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (25 bp):
CTGATTTTGATTCTGTCACCTAATA
Found at i:76285576 original size:6 final size:6
Alignment explanation
Indices: 76285515--76285630 Score: 67
Period size: 6 Copynumber: 18.8 Consensus size: 6
76285505 TTGCATTCAC
* * * * *
76285515 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTTTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
76285565 ATTCTG ATTCTG ATTTTG ATTATG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
76285614 ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCT
76285631 AGTTATGATA
Statistics
Matches: 82, Mismatches: 19, Indels: 18
0.69 0.16 0.15
Matches are distributed among these distances:
5 4 0.05
6 67 0.82
7 8 0.10
8 3 0.04
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:76285578 original size:37 final size:37
Alignment explanation
Indices: 76285537--76285630 Score: 143
Period size: 37 Copynumber: 2.5 Consensus size: 37
76285527 ATTCTGTTAC
*
76285537 CTGATACTGATTTTGATTCTGTCACCTAATTCTGATT
1 CTGATTCTGATTTTGATTCTGTCACCTAATTCTGATT
* * *
76285574 CTGATTTTGATTATGATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTTTGATTCTGTCACCTAATTCTGATT
*
76285611 CTGATTCTCATTTTGATTCT
1 CTGATTCTGATTTTGATTCT
76285631 AGTTATGATA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTTTGATTCTGTCACCTAATTCTGATT
Found at i:76296396 original size:54 final size:54
Alignment explanation
Indices: 76296338--76296467 Score: 172
Period size: 54 Copynumber: 2.4 Consensus size: 54
76296328 ATTACCAAAG
* *
76296338 TACCCTCAATTTATAGAATTACCGTTTTAACC-TCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTTTAACCAT-GATCTACAGAATTACCGTTT
* * * *
76296392 TACCCTCGATTTATAGAACTACTGTTTTACCCATGATCTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTTTAACCATGATCTACAGAATTACCGTTT
* *
76296446 TACCCTTGATTTATAAAATTAC
1 TACCCTCGATTTATAGAATTAC
76296468 TAAAATACCC
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
54 65 0.98
55 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACCGTTTTAACCATGATCTACAGAATTACCGTTT
Found at i:76296468 original size:27 final size:27
Alignment explanation
Indices: 76296338--76296468 Score: 156
Period size: 27 Copynumber: 4.9 Consensus size: 27
76296328 ATTACCAAAG
* *
76296338 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* * *
76296365 TAACCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
76296392 TACCCTCGATTTATAGAACTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
76296419 TACCCAT-GATCTACAGAATTACTGTTT
1 TACCC-TCGATTTATAGAATTACTGTTT
* *
76296446 TACCCTTGATTTATAAAATTACT
1 TACCCTCGATTTATAGAATTACT
76296469 AAAATACCCT
Statistics
Matches: 89, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 87 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:76296476 original size:27 final size:27
Alignment explanation
Indices: 76296446--76296699 Score: 235
Period size: 27 Copynumber: 9.4 Consensus size: 27
76296436 ATTACTGTTT
* *
76296446 TACCCTTGATTTATAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* **
76296473 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* **
76296500 TACCCTCGATCAGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* * ***
76296527 TACCCTAG-TCTGTAAAATTGTTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* * * *
76296553 TACCCCTGGTTTGTAAAATTACCGAAG
1 TACCCTTGATTTGTAAAATTACCAAAA
**
76296580 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
*
76296607 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTGTAAAATTACCAAAA
* * *
76296634 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGATTTGTAAAATTACCAAAA
**
76296661 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
*
76296688 TACCCCTGATTT
1 TACCCTTGATTT
76296700 ACAACTTTGA
Statistics
Matches: 181, Mismatches: 41, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
26 22 0.12
27 158 0.87
28 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTTGATTTGTAAAATTACCAAAA
Found at i:76296493 original size:54 final size:54
Alignment explanation
Indices: 76296372--76296495 Score: 140
Period size: 54 Copynumber: 2.3 Consensus size: 54
76296362 TTTTAACCTC
* ****
76296372 GATTTACAGAATTACCGTTTTACCCTCGATTTATAGAACTACTGTTTTACCCAT
1 GATTTACAGAATTACCGTTTTACCCTCGATTTATAAAACTACTAAAATACCCAT
* * * * *
76296426 GATCTACAGAATTACTGTTTTACCCTTGATTTATAAAATTACTAAAATACCCTT
1 GATTTACAGAATTACCGTTTTACCCTCGATTTATAAAACTACTAAAATACCCAT
* *
76296480 GGTTTACAAAATTACC
1 GATTTACAGAATTACC
76296496 AAAATACCCT
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (54 bp):
GATTTACAGAATTACCGTTTTACCCTCGATTTATAAAACTACTAAAATACCCAT
Found at i:76296531 original size:81 final size:80
Alignment explanation
Indices: 76296446--76296700 Score: 309
Period size: 81 Copynumber: 3.2 Consensus size: 80
76296436 ATTACTGTTT
* ** * * *
76296446 TACCCTTGATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATC
1 TACCCCTGATTTATAAAATTACTAAAATACCC-TGGTTTGTAAAATTACCGAAATACCCTCAATT
*
76296511 AGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* * ** *
76296527 TA-CCCT-AGTCTGTAAAATTGTTAAAATACCCCTGGTTTGTAAAATTACCGAAGTACCCTCAAT
1 TACCCCTGA-TTTATAAAATTACTAAAATA-CCCTGGTTTGTAAAATTACCGAAATACCCTCAAT
76296590 TTGTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
* * *
76296607 TACCCCT-AGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAAT
1 TACCCCTGA-TTTATAAAATTACTAAAATACC-CTGGTTTGTAAAATTACCGAAATACCCTCAAT
76296671 TTGTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
76296688 TACCCCTGATTTA
1 TACCCCTGATTTA
76296701 CAACTTTGAC
Statistics
Matches: 150, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
79 1 0.01
80 64 0.43
81 84 0.56
82 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (80 bp):
TACCCCTGATTTATAAAATTACTAAAATACCCTGGTTTGTAAAATTACCGAAATACCCTCAATTT
GTAAAATTACCAAAA
Found at i:76296756 original size:27 final size:27
Alignment explanation
Indices: 76296717--76296768 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
76296707 TGACTTTCTA
76296717 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
*
76296744 AAAATTACT-GAAATACCTTTGGTTT
1 AAAATTA-TGGAAATACCATTGGTTT
76296769 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:76296845 original size:27 final size:27
Alignment explanation
Indices: 76296813--76296891 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
76296803 GACTAAAATA
76296813 CCCCTATTA-GGTAAAAAGACCGTAAAG
1 CCCCTA-TAGGGTAAAAAGACCGTAAAG
** *
76296840 CCCCTATAGGGTAAAGTGATCGTAAAG
1 CCCCTATAGGGTAAAAAGACCGTAAAG
* **
76296867 CCCCTGTAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
76296892 TACCCTTGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 2 0.04
27 44 0.96
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:76296901 original size:27 final size:27
Alignment explanation
Indices: 76296830--76296913 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 27
76296820 TAGGTAAAAA
*
76296830 GACCGTAAAGCCCCTATAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
*
76296857 GATCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
* * *
76296884 GACCGTAATA-CCCTTGTATGGTAAAAT
1 GACCGTAA-AGCCCCTGTAGGGTAAAGT
76296911 GAC
1 GAC
76296914 GAATATGCCC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
27 49 0.98
28 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGGTAAAGT
Found at i:76297818 original size:25 final size:26
Alignment explanation
Indices: 76297716--76297851 Score: 188
Period size: 26 Copynumber: 5.2 Consensus size: 26
76297706 GAGGAAATGC
76297716 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
76297742 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
76297768 AAAAGGGCTTACGCCCCAGCAGTTTATTG
1 AAAAGGGCTTATG-CCC--CAGTTTATTG
**
76297797 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
76297822 AAAAGGGCTT-TGCCCCAG-TTATTA
1 AAAAGGGCTTATGCCCCAGTTTATTG
76297846 AAAAGG
1 AAAAGG
76297852 CTAGGCCTCC
Statistics
Matches: 100, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
24 9 0.09
25 26 0.26
26 38 0.38
27 6 0.06
28 1 0.01
29 20 0.20
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:76297828 original size:54 final size:55
Alignment explanation
Indices: 76297716--76297839 Score: 186
Period size: 54 Copynumber: 2.3 Consensus size: 55
76297706 GAGGAAATGC
**
76297716 AAAAGGGCTTATG-CCC--CAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
76297768 AAAAGGGCTTACGCCCCAGCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
76297822 AAAAGGGCTT-TGCCCCAG
1 AAAAGGGCTTATGCCCCAG
76297840 TTATTAAAAA
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
52 12 0.18
53 10 0.15
54 23 0.35
55 20 0.31
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (55 bp):
AAAAGGGCTTATGCCCCAGCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:76298008 original size:42 final size:42
Alignment explanation
Indices: 76297949--76298040 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
76297939 TAGTCTCCCC
* ** *
76297949 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
76297991 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
76298033 AAATGGGC
1 AAATGGGC
76298041 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:76300402 original size:27 final size:27
Alignment explanation
Indices: 76300369--76300769 Score: 196
Period size: 27 Copynumber: 14.8 Consensus size: 27
76300359 CCTCAAATTG
*
76300369 TAAAATTACCAAAGTACCCTTGATTTA
1 TAAAATTACCAAAATACCCTTGATTTA
* **** *
76300396 TAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTTGATTTA
* **** *
76300423 TAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTTGATTTA
* ***
76300450 TAAAATTACTATCTTACCCTTGATTTA
1 TAAAATTACCAAAATACCCTTGATTTA
* * * *** *
76300477 CAGAATTACTATTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTTGATTTA
* ** *
76300504 CAAAATTATTAAAATACCCTTGGTTTA
1 TAAAATTACCAAAATACCCTTGATTTA
* * *
76300531 CAAAATTACCAAAATACCCTCGA-TCA
1 TAAAATTACCAAAATACCCTTGATTTA
* * *
76300557 GTAAAATTACCAAAATACCCTAG-TCTG
1 -TAAAATTACCAAAATACCCTTGATTTA
* * * * *
76300584 TAAAATTGCTAAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCTTGATTTA
* ** *
76300611 TAAAATTACCGAAATACCCTCAATTTG
1 TAAAATTACCAAAATACCCTTGATTTA
76300638 TAAAATTACCAAAATACCCTTGATTTA
1 TAAAATTACCAAAATACCCTTGATTTA
* * * *
76300665 TAAAGTTA-CAGAAGTACCATTGACTTTC
1 TAAAATTACCA-AAATACCCTTGA-TTTA
* *** * *
76300693 TAGAATTTATGGAAATACCATTGGTTTA
1 TA-AAATTACCAAAATACCCTTGATTTA
* ** * * *
76300721 CAAAATTACTGAAATACGCTTGGTTTG
1 TAAAATTACCAAAATACCCTTGATTTA
* *
76300748 TAAATTTACCAAAACACCCTTG
1 TAAAATTACCAAAATACCCTTG
76300770 TAGGATGAAA
Statistics
Matches: 296, Mismatches: 71, Indels: 14
0.78 0.19 0.04
Matches are distributed among these distances:
26 22 0.07
27 250 0.84
28 9 0.03
29 15 0.05
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.34
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTTGATTTA
Found at i:76300830 original size:27 final size:27
Alignment explanation
Indices: 76300800--76300859 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
76300790 ACCCCTACTA
76300800 GGTAAAAAGA-CTGCAAAGCCCCTGTAG
1 GGTAAAAAGATC-GCAAAGCCCCTGTAG
** * *
76300827 GGTAAAGTGATCGTAAAGCCCTTGTAG
1 GGTAAAAAGATCGCAAAGCCCCTGTAG
76300854 GGTAAA
1 GGTAAA
76300860 GTGACCGTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (27 bp):
GGTAAAAAGATCGCAAAGCCCCTGTAG
Found at i:76300860 original size:27 final size:27
Alignment explanation
Indices: 76300814--76300891 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
76300804 AAAAGACTGC
*
76300814 AAAGCCCCTGTAGGGTAAAGTGATCGT
1 AAAGCCCCTGTAGGGTAAAGTGACCGT
*
76300841 AAAGCCCTTGTAGGGTAAAGTGACCGT
1 AAAGCCCCTGTAGGGTAAAGTGACCGT
* *
76300868 AATA-CCCCTGTATGGTAAAATGAC
1 AA-AGCCCCTGTAGGGTAAAGTGAC
76300892 GAATATGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
27 44 0.98
28 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (27 bp):
AAAGCCCCTGTAGGGTAAAGTGACCGT
Found at i:76301775 original size:55 final size:54
Alignment explanation
Indices: 76301694--76301813 Score: 194
Period size: 54 Copynumber: 2.3 Consensus size: 54
76301684 GAGGAAGTGC
*
76301694 AAAAGGGCTTAT---GCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
76301746 AAAAGGGCTTATGCCGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
76301800 AAAAGGGCTT-TGCC
1 AAAAGGGCTTATGCC
76301814 CCAGTTAATA
Statistics
Matches: 64, Mismatches: 1, Indels: 5
0.91 0.01 0.07
Matches are distributed among these distances:
52 12 0.19
53 4 0.06
54 24 0.38
55 24 0.38
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (54 bp):
AAAAGGGCTTATGCCGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:76301794 original size:25 final size:26
Alignment explanation
Indices: 76301694--76301819 Score: 184
Period size: 26 Copynumber: 4.8 Consensus size: 26
76301684 GAGGAAGTGC
*
76301694 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
76301720 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
76301746 AAAAGGGCTTATGCCGCCCCAGTTTATTG
1 AAAAGGGCTTAT---GCCCCAGTTTATCG
*
76301775 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
76301800 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
76301820 AATAAAGAGG
Statistics
Matches: 93, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
25 32 0.34
26 37 0.40
28 1 0.01
29 23 0.25
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:76302023 original size:42 final size:42
Alignment explanation
Indices: 76301964--76302055 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
76301954 TAGTCTCCCC
* ** *
76301964 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
76302006 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
76302048 AAATGGGC
1 AAATGGGC
76302056 CTAAGGGCAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:76304405 original size:27 final size:27
Alignment explanation
Indices: 76304361--76304730 Score: 182
Period size: 27 Copynumber: 13.7 Consensus size: 27
76304351 CCTCAAATTG
* *
76304361 TAAAATTACCAAACTACCCTCGACTTA
1 TAAAATTACCAAATTACCCTCGATTTA
**
76304388 TAAAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* * ** *
76304415 TAGAATTACTATTTTACCCTTGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* * * **
76304442 CAGAATTACTATTTTACCCTCGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* * * * *
76304469 CAAAATTACTAAAATACCCTTGGTTTA
1 TAAAATTACCAAATTACCCTCGATTTA
*
76304496 TAAAATTACCAAAATACCCTCGA-TTA
1 TAAAATTACCAAATTACCCTCGATTTA
* * * *
76304522 GTAAAATTACCAAAATACCCTAG-TCTG
1 -TAAAATTACCAAATTACCCTCGATTTA
* * * * *
76304549 TAAAATTGCTAAAATACCC-CTGGTTTG
1 TAAAATTACCAAATTACCCTC-GATTTA
* * *
76304576 TAAAATTATCGAAA-TACCCTCAATTTG
1 TAAAATTA-CCAAATTACCCTCGATTTA
* * *
76304603 TAAAATTACCAAAATA-CCTCTAGTTTG
1 TAAAATTACCAAATTACCCTCGA-TTTA
* * *
76304630 TAAAATTACCAAAATACCACT-GGTTTG
1 TAAAATTACCAAATTACC-CTCGATTTA
* * * *
76304657 TGAAATTACCGAAA-TACCCTCAAATTG
1 TAAAATTACC-AAATTACCCTCGATTTA
*
76304684 TCAAATTACCAGAA-TACCC-CTGATTTA
1 TAAAATTACCA-AATTACCCTC-GATTTA
* * * *
76304711 CAAAGTTACAAAAATACCCT
1 TAAAATTACCAAATTACCCT
76304731 TGAGTTTCTA
Statistics
Matches: 281, Mismatches: 46, Indels: 31
0.78 0.13 0.09
Matches are distributed among these distances:
26 36 0.13
27 234 0.83
28 9 0.03
29 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
TAAAATTACCAAATTACCCTCGATTTA
Found at i:76304530 original size:81 final size:80
Alignment explanation
Indices: 76304456--76304757 Score: 306
Period size: 81 Copynumber: 3.7 Consensus size: 80
76304446 ATTACTATTT
* * *
76304456 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATT
76304521 AGTAAAATTACCAAAA
66 -GTAAAATTACCAAAA
* * ** * * *
76304537 TACCCTAG-TCTGTAAAATTGCTAAAATACCCCTGGTTTGTAAAATTATCGAAATACCCTCAATT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAA-T
76304601 TGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* ** * *
76304617 TA-CCTCTAGTTTGTAAAATTACCAAAATACCAC-TGGTTTGTGAAATTACCGAAATACCCTCAA
1 TACCCTCGA-TTTACAAAATTACTAAAATACC-CTTGGTTTGTAAAATTACCGAAATACCCTC-A
* *
76304680 ATTGTCAAATTACCAGAA
63 ATTGTAAAATTACCAAAA
* * * **
76304698 TACCC-CTGATTTACAAAGTTACAAAAATACCCTTGAGTTTCTAAAAATTATGGAAATACC
1 TACCCTC-GATTTACAAAATTACTAAAATACCCTTG-GTTTGT-AAAATTACCGAAATACC
76304758 ATTGGTTTAC
Statistics
Matches: 183, Mismatches: 28, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
79 3 0.02
80 63 0.34
81 92 0.50
82 11 0.06
83 14 0.08
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (80 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATT
GTAAAATTACCAAAA
Found at i:76304629 original size:54 final size:52
Alignment explanation
Indices: 76304470--76304702 Score: 232
Period size: 54 Copynumber: 4.3 Consensus size: 52
76304460 CTCGATTTAC
* * * * *
76304470 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTAGT
1 AAAATTACCAAAATACCC-TAGTTTGTAAAATTACCAAAATACCCTAG-TTTGT
* * * *
76304524 AAAATTACCAAAATACCCTAGTCTGTAAAATTGCTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATA-CCCTAGTTTGT
* * *
76304577 AAAATTATCGAAATACCCTCAATTTGTAAAATTACCAAAATACCTCTAGTTTGT
1 AAAATTACCAAAATACCCT-AGTTTGTAAAATTACCAAAATACC-CTAGTTTGT
* * * **
76304631 AAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAAATTGT
1 AAAATTACCAAAATACC-CTAGTTTGTAAAATTACCAAAATACCCT-AGTTTGT
* *
76304685 CAAATTACCAGAATACCC
1 AAAATTACCAAAATACCC
76304703 CTGATTTACA
Statistics
Matches: 149, Mismatches: 25, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
53 44 0.30
54 103 0.69
55 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (52 bp):
AAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCTAGTTTGT
Found at i:76304887 original size:27 final size:27
Alignment explanation
Indices: 76304854--76304937 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
76304844 TAGGTAAAAA
*
76304854 GACCGTAAAGCCCTTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
*
76304881 GATCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
* *
76304908 GACCGTAATA-CCCCTGTATGGTAAAAT
1 GACCGTAA-AGCCCCTGTAGGGTAAAGT
76304935 GAC
1 GAC
76304938 GAATATGCAC
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 50 0.98
28 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGGTAAAGT
Found at i:76305769 original size:26 final size:26
Alignment explanation
Indices: 76305740--76305957 Score: 251
Period size: 26 Copynumber: 8.8 Consensus size: 26
76305730 GAGGAAGTGC
*
76305740 AAAATGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
76305766 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
76305792 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * * * *
76305818 GAAAGGGATTATACCCCTGTTTA-TC
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
76305843 AAAA------A--CCTCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
76305861 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
76305887 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
76305913 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
76305938 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
76305958 ATTAAAGAGG
Statistics
Matches: 164, Mismatches: 19, Indels: 19
0.81 0.09 0.09
Matches are distributed among these distances:
17 8 0.05
18 5 0.03
19 1 0.01
24 1 0.01
25 37 0.23
26 112 0.68
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:76305823 original size:52 final size:52
Alignment explanation
Indices: 76305740--76305957 Score: 287
Period size: 52 Copynumber: 4.4 Consensus size: 52
76305730 GAGGAAGTGC
*
76305740 AAAATGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* * * * *
76305792 AAAAGGGCTTATGCCCCAGTTTATTGGAAAGGGATTATACCCCTGTTTATC-
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* *
76305843 AAAA------A--CCTCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
76305887 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
76305938 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
76305958 ATTAAAGAGG
Statistics
Matches: 144, Mismatches: 13, Indels: 20
0.81 0.07 0.11
Matches are distributed among these distances:
43 33 0.23
44 4 0.03
45 1 0.01
50 11 0.08
51 28 0.19
52 67 0.47
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:76305893 original size:69 final size:69
Alignment explanation
Indices: 76305782--76305910 Score: 195
Period size: 69 Copynumber: 1.9 Consensus size: 69
76305772 GCTTATGCCC
* * *
76305782 CAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGGAAAGGGATTATACCCCTGTTTATCAAAA
1 CAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATCGAAAAGGGATTATACCCCAGTTTATCAAAA
76305847 ACCT
66 ACCT
** * *
76305851 CAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATCGAAAAGGGCTTATGCCCCAGTTTAT
1 CAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATCGAAAAGGGATTATACCCCAGTTTAT
76305911 TGAAAAGGGC
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 53 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (69 bp):
CAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATCGAAAAGGGATTATACCCCAGTTTATCAAAA
ACCT
Found at i:76305943 original size:51 final size:51
Alignment explanation
Indices: 76305851--76305957 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 51
76305841 TCAAAAACCT
*
76305851 CAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATCGAAAAGGGCTTATGCCC
1 CAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTT-TGCCC
76305903 CAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGCTTTGCCC
1 CAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCC
76305953 CAGTT
1 CAGTT
76305958 ATTAAAGAGG
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
50 10 0.19
51 24 0.44
52 20 0.37
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.29
Consensus pattern (51 bp):
CAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCC
Found at i:76306178 original size:42 final size:42
Alignment explanation
Indices: 76306109--76306190 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
76306099 CCCAAATAGG
** *
76306109 CTTGCATACATTCATTGGTATTTCATGTGATATTGAAATGAA
1 CTTGCATACATTCATTGACATTACATGTGATATTGAAATGAA
76306151 CTTGCATACA-TCTATTGACATTACATGTGATATTGAAATG
1 CTTGCATACATTC-ATTGACATTACATGTGATATTGAAATG
76306191 GGTCTAAGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 2 0.06
42 34 0.94
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (42 bp):
CTTGCATACATTCATTGACATTACATGTGATATTGAAATGAA
Found at i:76308658 original size:27 final size:27
Alignment explanation
Indices: 76308529--76308657 Score: 177
Period size: 27 Copynumber: 4.8 Consensus size: 27
76308519 TTACCAAATT
* *
76308529 CCCTAGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
*
76308556 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
* *
76308583 CCCTCGATTTATAGAATTATTGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
* * *
76308610 CCCTTGATCTACAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
*
76308637 CCCTCGATTTACAAAATTACT
1 CCCTCGATTTACAGAATTACT
76308658 AAAATACCTT
Statistics
Matches: 88, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACTGTTTTA
Found at i:76308665 original size:27 final size:27
Alignment explanation
Indices: 76308635--76308992 Score: 206
Period size: 27 Copynumber: 13.2 Consensus size: 27
76308625 ATTACTATTT
* *
76308635 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * * *
76308662 TACCTTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
*
76308689 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAA
* * *
76308716 TACCATAG-TTTATAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
76308742 TACCC-CTGGTTTGTAAAATTACCTAAA
1 TACCCTC-GATTTATAAAATTACCAAAA
* ** *
76308769 TACCTTTAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
76308796 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * * *
76308823 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTATAAAATTACCAAAA
* * *
76308850 TGCCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
76308877 TACCC-CTGATTTACAAAGTTACAAAAA
1 TACCCTC-GATTTATAAAATTACCAAAA
* * ***
76308904 TACCCTTGACTTTCTAAAAATTATGGAAA
1 TACCCTCGA-TTTAT-AAAATTACCAAAA
* * * * *
76308933 TACCATTGGTTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * * * *
76308960 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
*
76308987 CACCCT
1 TACCCT
76308993 TGTAGGATGA
Statistics
Matches: 258, Mismatches: 61, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
26 24 0.09
27 210 0.81
28 8 0.03
29 16 0.06
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:76308693 original size:54 final size:54
Alignment explanation
Indices: 76308635--76308986 Score: 296
Period size: 54 Copynumber: 6.5 Consensus size: 54
76308625 ATTACTATTT
** * *
76308635 TACCCTCGATTTACAAAATTACTAAAATACCTTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCATTGGTTTACAAAATTACCAAAA
** * * *
76308689 TACCCTCGATCAGTAAAATTACCAAAATACCA-TAGTTTATAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCATTGGTTTACAAAATTACCAAAA
* * * ** **
76308742 TACCC-CTGGTTTGTAAAATTACCTAAATACCTTTAATTTGTAAAATTACCAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAATACCATTGGTTTACAAAATTACCAAAA
* * *** *
76308796 TACCCT-TAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAATACCATTGGTTTACAAAATTACCAAAA
* * ** * * *
76308850 TGCCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTACAAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCATTGGTTTACAAAATTACCAAAA
* * *** *
76308904 TACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTACAAAATTACTAAAA
1 TACCCTCGA-TTTGT-AAAATTACCAAAATACCATTGGTTTACAAAATTACCAAAA
* * * *
76308960 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
76308987 CACCCTTGTA
Statistics
Matches: 236, Mismatches: 55, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
52 1 0.00
53 43 0.18
54 143 0.61
55 9 0.04
56 40 0.17
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.32
Consensus pattern (54 bp):
TACCCTCGATTTGTAAAATTACCAAAATACCATTGGTTTACAAAATTACCAAAA
Found at i:76308842 original size:81 final size:81
Alignment explanation
Indices: 76308644--76308907 Score: 298
Period size: 81 Copynumber: 3.3 Consensus size: 81
76308634 TTACCCTCGA
* * ** ** * * **
76308644 TTTACAAAATTACTAAAATACCTTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATT
1 TTTATAAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATT
76308709 ACCAAAATA-CCATAG
66 ACCAAAATACCCATAG
* * * * *
76308724 TTTATAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCTAAATACCTTTAATTTGTAAAATT
1 TTTATAAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATT
*
76308789 ACCAAAATACCCTTAG
66 ACCAAAATACCCATAG
* * *
76308805 TTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATGCCCTCAATTTGTAAAATT
1 TTTATAAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATT
*
76308870 ACCAAAATACCCCT-G
66 ACCAAAATACCCATAG
* * *
76308885 ATTTACAAAGTTACAAAAATACC
1 -TTTATAAAATTACCAAAATACC
76308908 CTTGACTTTC
Statistics
Matches: 157, Mismatches: 25, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
80 64 0.41
81 93 0.59
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (81 bp):
TTTATAAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATT
ACCAAAATACCCATAG
Found at i:76309046 original size:27 final size:27
Alignment explanation
Indices: 76309016--76309112 Score: 79
Period size: 27 Copynumber: 3.6 Consensus size: 27
76309006 GACTAAAATA
* *
76309016 CCCCTATTAGTTAAAAAGACCGTAAAG
1 CCCCTATAAGGTAAAAAGACCGTAAAG
* ** *
76309043 CCCCTGTAAGGTAAAGTGATCGTAAAG
1 CCCCTATAAGGTAAAAAGACCGTAAAG
* * *
76309070 CCCCTGTAGGGTAAAATGACCGTAATA-
1 CCCCTATAAGGTAAAAAGACCGTAA-AG
* *
76309097 CCCCTGTATGGTAAAA
1 CCCCTATAAGGTAAAA
76309113 TGACAAATAT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.23
Consensus pattern (27 bp):
CCCCTATAAGGTAAAAAGACCGTAAAG
Found at i:76309113 original size:27 final size:27
Alignment explanation
Indices: 76309027--76309116 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
76309017 CCCTATTAGT
*
76309027 TAAAAAGACCGTAAAGCCCCTGTAAGG
1 TAAAATGACCGTAAAGCCCCTGTAAGG
* * *
76309054 TAAAGTGATCGTAAAGCCCCTGTAGGG
1 TAAAATGACCGTAAAGCCCCTGTAAGG
*
76309081 TAAAATGACCGTAATA-CCCCTGTATGG
1 TAAAATGACCGTAA-AGCCCCTGTAAGG
76309108 TAAAATGAC
1 TAAAATGAC
76309117 AAATATGCCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 54 0.98
28 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.21
Consensus pattern (27 bp):
TAAAATGACCGTAAAGCCCCTGTAAGG
Found at i:76309956 original size:26 final size:26
Alignment explanation
Indices: 76309919--76310093 Score: 228
Period size: 26 Copynumber: 6.8 Consensus size: 26
76309909 GAGGAAGTGC
*
76309919 AAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * * **
76309945 CAAAGGGATTATGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
76309971 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
76309997 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
76310023 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
76310049 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
76310074 AAAAGGGCTT-TGCCTCAGTT
1 AAAAGGGCTTATGCCCCAGTT
76310094 ATTAAAGAGG
Statistics
Matches: 131, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
25 31 0.24
26 100 0.76
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:76310002 original size:52 final size:52
Alignment explanation
Indices: 76309919--76310093 Score: 282
Period size: 52 Copynumber: 3.4 Consensus size: 52
76309909 GAGGAAGTGC
* * * *
76309919 AAAAGGGCTTATGCCCCAATTTATTGCAAAGGGATTATGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
76309971 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
76310023 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
76310074 AAAAGGGCTT-TGCCTCAGTT
1 AAAAGGGCTTATGCCCCAGTT
76310094 ATTAAAGAGG
Statistics
Matches: 116, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
50 8 0.07
51 25 0.22
52 83 0.72
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:76310303 original size:42 final size:42
Alignment explanation
Indices: 76310238--76310329 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
76310228 TAGTCTCCCC
* * ** *
76310238 AAATGGGCTTGGATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
*
76310280 GAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
76310322 AAATGGGC
1 AAATGGGC
76310330 CTAAGGGCCA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:76314211 original size:46 final size:45
Alignment explanation
Indices: 76314143--76314317 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 45
76314133 TGTAACCCGC
*
76314143 CCATAAGTGAAGTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
* * *
76314189 CCATAAGTGAACTCGGAATCAACTCAATGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * * * *
76314235 ACATCTCTCGAACTCGGACTTAACTCAACGAGTTTGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
76314282 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
76314318 ATGCTCAACC
Statistics
Matches: 101, Mismatches: 21, Indels: 14
0.74 0.15 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 62 0.61
47 28 0.28
49 3 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:76316753 original size:30 final size:30
Alignment explanation
Indices: 76316709--76316797 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
76316699 CAAAGATAAC
*
76316709 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
76316738 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
76316768 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
76316798 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:76316757 original size:15 final size:14
Alignment explanation
Indices: 76316709--76316791 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
76316699 CAAAGATAAC
*
76316709 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
76316723 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
76316738 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
76316753 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
76316768 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
76316783 AAGAAACCC
1 AAGAAACCC
76316792 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:76316797 original size:15 final size:15
Alignment explanation
Indices: 76316720--76316797 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
76316710 AGAAAACCGA
76316720 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
76316735 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
76316749 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
76316764 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
76316780 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
76316795 ATA
1 ATA
76316798 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:76319881 original size:46 final size:46
Alignment explanation
Indices: 76319709--76319884 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
76319699 TGTAACCCGC
* * * *
76319709 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
76319755 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
76319805 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
76319848 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
76319885 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 63 0.58
47 28 0.26
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:76319884 original size:93 final size:93
Alignment explanation
Indices: 76319717--76319887 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
76319707 GCCCATAAGT
* *
76319717 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
76319782 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CAAGCTCGGATGCCTAGTTACATCTCTC
* * *
76319810 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
76319875 CAAGTTCGGATGC
66 CAAGCTCGGATGC
76319888 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGCTCGGATGCCTAGTTACATCTCTC
Found at i:76325445 original size:16 final size:17
Alignment explanation
Indices: 76325424--76325462 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
76325414 CTTTTATTAA
76325424 GTTTTTAAGACTCATTC
1 GTTTTTAAGACTCATTC
* *
76325441 GTTTTTAAGATTCATTT
1 GTTTTTAAGACTCATTC
76325458 GTTTT
1 GTTTT
76325463 CTTTTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.10, G:0.13, T:0.56
Consensus pattern (17 bp):
GTTTTTAAGACTCATTC
Found at i:76331207 original size:20 final size:19
Alignment explanation
Indices: 76331182--76331220 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
76331172 GTTGCAAATC
76331182 ATATATAATGTAAATGAAAA
1 ATATAT-ATGTAAATGAAAA
* *
76331202 ATATATGTGTATATGAAAA
1 ATATATATGTAAATGAAAA
76331221 GTACATTCGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.54, C:0.00, G:0.13, T:0.33
Consensus pattern (19 bp):
ATATATATGTAAATGAAAA
Found at i:76333852 original size:35 final size:35
Alignment explanation
Indices: 76333801--76333873 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
76333791 AGATTCGAAA
76333801 ATAGGTTGAACAAAAACATTAAACTGCTAGTTGGC
1 ATAGGTTGAACAAAAACATTAAACTGCTAGTTGGC
*
76333836 ATAGGTTGAACGAAAACATTAAACTGCTAGTTGGC
1 ATAGGTTGAACAAAAACATTAAACTGCTAGTTGGC
76333871 ATA
1 ATA
76333874 CTTGGAATAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.26
Consensus pattern (35 bp):
ATAGGTTGAACAAAAACATTAAACTGCTAGTTGGC
Found at i:76338245 original size:37 final size:37
Alignment explanation
Indices: 76338203--76338277 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
76338193 AATAATTAAA
76338203 AGCCATACATGTTTATATTTGATAGCTAAAATTAGCT
1 AGCCATACATGTTTATATTTGATAGCTAAAATTAGCT
* *
76338240 AGCCATGCATGTTTATATTTGATAGCTGAAATTAGCT
1 AGCCATACATGTTTATATTTGATAGCTAAAATTAGCT
76338277 A
1 A
76338278 AAGGAAAAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.37
Consensus pattern (37 bp):
AGCCATACATGTTTATATTTGATAGCTAAAATTAGCT
Found at i:76340423 original size:27 final size:28
Alignment explanation
Indices: 76340390--76340446 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
76340380 TGGTATGTAA
*
76340390 ATAATACAACTA-AATGCTAATTTATGT
1 ATAATACAACTACAATACTAATTTATGT
*
76340417 ATAATACAACTACATTACTAATTTATGT
1 ATAATACAACTACAATACTAATTTATGT
76340445 AT
1 AT
76340447 TGAATTTTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 12 0.44
28 15 0.56
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.39
Consensus pattern (28 bp):
ATAATACAACTACAATACTAATTTATGT
Found at i:76340772 original size:45 final size:46
Alignment explanation
Indices: 76340587--76340807 Score: 186
Period size: 46 Copynumber: 4.8 Consensus size: 46
76340577 GGGTTATTGT
* * * *
76340587 GAGCTAGTGTAAGAGATGTCTGGGACATGCATCGGCCAC-ATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTACGA-GATGA
* * * *
76340633 GAGCCAGTGTAAGATCATGTTTGGGACATGGCATCGGC-ATTGAGATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCTA-CGAGATGA
* * * *
76340681 GTGCTAGTGTATGACATGTCTGGGACATGCATCAGCCT-TGAAATGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CTACGAGATG-A
76340728 -AGCTAGTGTAAGACATGTC-GGGACATGCATCAGCTACGAGATG-
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGATGA
* * *
76340771 TA-TTAGTGTAAGACTACGTCTGGGACATGGCATCAGC
1 GAGCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCAGC
76340808 ACCTTACCCA
Statistics
Matches: 146, Mismatches: 17, Indels: 24
0.78 0.09 0.13
Matches are distributed among these distances:
43 11 0.08
44 7 0.05
45 26 0.18
46 50 0.34
47 28 0.19
48 23 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGATGA
Found at i:76360706 original size:40 final size:40
Alignment explanation
Indices: 76360651--76360918 Score: 455
Period size: 40 Copynumber: 6.7 Consensus size: 40
76360641 GAGCATTGGA
*
76360651 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
76360691 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
76360731 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
76360771 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * * *
76360811 ATATGTCCGAGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
76360851 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
76360891 ATATATCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
76360919 ATGTGTTTGC
Statistics
Matches: 213, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 213 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:76365405 original size:46 final size:44
Alignment explanation
Indices: 76365352--76365524 Score: 188
Period size: 46 Copynumber: 3.8 Consensus size: 44
76365342 TTATTGTGAA
*
76365352 CTAGTGTAAGACGTGTCTGGGACATGCATCGGCCACATTATGA-GAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGG-C-CATTA-GACGAG
76365398 CTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGACGAGTG
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATT-AGACGA--G
* * * *
76365446 CTAGTGAAAGACATGTCTGGGACATGCATCTGCCTTTAGATGTAAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTAGACG--AG
*
76365492 CCAGTGTAAGACATGTCTGGGACATGCATCGGC
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGC
76365525 TACGAGATGT
Statistics
Matches: 110, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
45 6 0.05
46 55 0.50
47 30 0.27
48 19 0.17
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (44 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTAGACGAG
Found at i:76365533 original size:46 final size:46
Alignment explanation
Indices: 76365354--76365566 Score: 170
Period size: 46 Copynumber: 4.6 Consensus size: 46
76365344 ATTGTGAACT
* * * *
76365354 AGTGTAAGACGTGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGAGAGCC
* * * *
76365400 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGATGAGAGCC
* * **
76365448 AGTGAAAGACATGTCTGGGACATGCATCTGCCT-TTAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCTACGAGATG-AGAGCC
* *
76365494 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGAGAGCC
*
76365538 A-TGTAAGACCATGTCCGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
76365567 AGCACCTTAC
Statistics
Matches: 138, Mismatches: 18, Indels: 23
0.77 0.10 0.13
Matches are distributed among these distances:
43 7 0.05
44 16 0.12
45 8 0.06
46 52 0.38
47 31 0.22
48 23 0.17
49 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGAGAGCC
Found at i:76367082 original size:19 final size:18
Alignment explanation
Indices: 76367058--76367102 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
76367048 TGCTGCAAAT
76367058 AATATATAATGTAAATGAA
1 AATATAT-ATGTAAATGAA
* *
76367077 AATATATGTGTATATGAA
1 AATATATATGTAAATGAA
76367095 AAGTATAT
1 AA-TATAT
76367103 TCGACCAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (18 bp):
AATATATATGTAAATGAA
Found at i:76367093 original size:18 final size:19
Alignment explanation
Indices: 76367067--76367102 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
76367057 TAATATATAA
76367067 TGTAAATGAAAA-TATATG
1 TGTAAATGAAAAGTATATG
*
76367085 TGTATATGAAAAGTATAT
1 TGTAAATGAAAAGTATAT
76367103 TCGACCAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.36
Consensus pattern (19 bp):
TGTAAATGAAAAGTATATG
Found at i:76371338 original size:45 final size:45
Alignment explanation
Indices: 76371278--76371575 Score: 221
Period size: 45 Copynumber: 6.9 Consensus size: 45
76371268 TAGGACTCCG
* * *
76371278 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGTATCGAT
1 ATATGTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCATCGAT
* * *
76371323 ATATGTGATTTCGTGTAAGACCATGTCTAGAATGTTGGCATCGAT
1 ATATGTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCATCGAT
* * * * * *
76371368 ATATATGGTTACGTGTAAGACCATGTCTGGGACATCGACAT---T
1 ATATGTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCATCGAT
* * * *
76371410 GTAT-TGA-TTCGTGTAAGATCC-TCTCTGGGACTTTTGCATCGAT
1 ATATGTGATTTCGTGTAAGA-CCATGTCTGGGACGTTGGCATCGAT
* * * ** *
76371453 ATATGTGGTTACGTGTAAGACCATGTCTGGGACATCAGCCTCG--
1 ATATGTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCATCGAT
*
76371496 -TAT-TGA-TTCGTGTAAGACC-TGTTTGGGACAG-TGGCATCG--
1 ATATGTGATTTCGTGTAAGACCATGTCTGGGAC-GTTGGCATCGAT
** * * *
76371535 ATATGTGATAGCATGTAAGACCATGTTTGGGACATTGGCAT
1 ATATGTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCAT
76371576 TGTTCGATAT
Statistics
Matches: 198, Mismatches: 42, Indels: 28
0.74 0.16 0.10
Matches are distributed among these distances:
39 14 0.07
40 38 0.19
41 9 0.05
42 17 0.09
43 20 0.10
44 4 0.02
45 96 0.48
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.34
Consensus pattern (45 bp):
ATATGTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCATCGAT
Found at i:76371454 original size:85 final size:84
Alignment explanation
Indices: 76371358--76371538 Score: 265
Period size: 85 Copynumber: 2.1 Consensus size: 84
76371348 TCTAGAATGT
*
76371358 TGGCATCGATATATATGGTTACGTGTAAGACCATGTCTGGGACATC-GACATTGTATTGATTCGT
1 TGGCATCGATATATATGGTTACGTGTAAGACCATGTCTGGGACATCAG-CATCGTATTGATTCGT
**
76371422 GTAAGATCCTCTCTGGGACTT
65 GTAAGA-CCTCTCTGGGACAG
* * *
76371443 TTGCATCGATATATGTGGTTACGTGTAAGACCATGTCTGGGACATCAGCCTCGTATTGATTCGTG
1 TGGCATCGATATATATGGTTACGTGTAAGACCATGTCTGGGACATCAGCATCGTATTGATTCGTG
* *
76371508 TAAGACCTGTTTGGGACAG
66 TAAGACCTCTCTGGGACAG
76371527 TGGCATCGATAT
1 TGGCATCGATAT
76371539 GTGATAGCAT
Statistics
Matches: 86, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
84 21 0.24
85 64 0.74
86 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (84 bp):
TGGCATCGATATATATGGTTACGTGTAAGACCATGTCTGGGACATCAGCATCGTATTGATTCGTG
TAAGACCTCTCTGGGACAG
Found at i:76380253 original size:30 final size:30
Alignment explanation
Indices: 76380213--76380291 Score: 140
Period size: 30 Copynumber: 2.6 Consensus size: 30
76380203 GCAGTGGTTT
*
76380213 TCACATGGCCTAGACACACGCCCGTGTCCC
1 TCACACGGCCTAGACACACGCCCGTGTCCC
76380243 TCACACGGCCTAGACACACGCCCGTGTCCC
1 TCACACGGCCTAGACACACGCCCGTGTCCC
*
76380273 TCACACGACCTAGACACAC
1 TCACACGGCCTAGACACAC
76380292 CCAAGTTGTC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.24, C:0.44, G:0.18, T:0.14
Consensus pattern (30 bp):
TCACACGGCCTAGACACACGCCCGTGTCCC
Found at i:76381364 original size:56 final size:53
Alignment explanation
Indices: 76381245--76381401 Score: 145
Period size: 56 Copynumber: 2.8 Consensus size: 53
76381235 CATGACATAG
* * *
76381245 CATGCCTCTCAACAGGGCTACATATGAGCACCCAGACCTAGCATGCATCACATTAC
1 CATGCCTCTCAACAGGGCTACATA--AGC-TCCAGACCTAGCATGTACCACATTAC
* *
76381301 CACGCCTCTCAATAGGGCTACATAAGCTTCCAGACCTAGCATGTACCACATAATTA-
1 CATGCCTCTCAACAGGGCTACATAAGC-TCCAGACCTAGCATGTACCAC---ATTAC
* * * * *
76381357 CATGCCTCTTAACGGGGCTACACAAGCTCCTGGACCTAGCGTGTA
1 CATGCCTCTCAACAGGGCTACATAAGCTCC-AGACCTAGCATGTA
76381402 TCATGTCATC
Statistics
Matches: 84, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
54 21 0.25
55 3 0.04
56 56 0.67
57 4 0.05
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.22
Consensus pattern (53 bp):
CATGCCTCTCAACAGGGCTACATAAGCTCCAGACCTAGCATGTACCACATTAC
Found at i:76384053 original size:54 final size:54
Alignment explanation
Indices: 76383995--76384241 Score: 232
Period size: 52 Copynumber: 4.6 Consensus size: 54
76383985 CAGACAGGGT
* * *
76383995 CTTACTCGTACATATATCAAAATCACATATTGATGCCAACGTATGAAACTTGGA
1 CTTACTCGCACATATATCAAAATCACATATTGATGCCAACGTATTAAACGTGGA
* * * * **
76384049 CTTACTCGCACACAAATATCGAAATTACAT-TTGATGCCAACGTCTTAAACGTTCA
1 CTTACTCG--CACATATATCAAAATCACATATTGATGCCAACGTATTAAACGTGGA
* * *
76384104 CTTACTCACACATATATCAGAATCATATATCT-ATGCCAACGTATTAAACGTGGA
1 CTTACTCGCACATATATCAAAATCACATAT-TGATGCCAACGTATTAAACGTGGA
*** * * * *
76384158 CTTACTCG--CATATATTGGAATCACATATCGTTGGCAACGTATTAAACGTGGT
1 CTTACTCGCACATATATCAAAATCACATATTGATGCCAACGTATTAAACGTGGA
* *
76384210 CTTACTCACACACATATATCAAAGTCACATAT
1 CTTACT--CGCACATATATCAAAATCACATAT
76384242 CGCTGCCACA
Statistics
Matches: 153, Mismatches: 31, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
52 42 0.27
53 15 0.10
54 36 0.24
55 28 0.18
56 32 0.21
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.30
Consensus pattern (54 bp):
CTTACTCGCACATATATCAAAATCACATATTGATGCCAACGTATTAAACGTGGA
Found at i:76384086 original size:55 final size:54
Alignment explanation
Indices: 76384008--76384167 Score: 157
Period size: 55 Copynumber: 2.9 Consensus size: 54
76383998 ACTCGTACAT
* *
76384008 ATATCAAAATCACATATTGATGCCAACGTATGAAACTTGGACTTACTCGCACACAA
1 ATATC-AAATTACAT-TTGATGCCAACGTATTAAACTTGGACTTACTCGCACACAA
* * *
76384064 ATATCGAAATTACATTTGATGCCAACGTCTTAAACGTT-CACTTACT--CACACAT
1 ATATC-AAATTACATTTGATGCCAACGTATTAAAC-TTGGACTTACTCGCACACAA
* * *
76384117 ATATCAGAATCATATATCT-ATGCCAACGTATTAAACGTGGACTTACTCGCA
1 ATATCA-AAT--TACATTTGATGCCAACGTATTAAACTTGGACTTACTCGCA
76384168 TATATTGGAA
Statistics
Matches: 86, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
52 1 0.01
53 15 0.17
54 23 0.27
55 30 0.35
56 17 0.20
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.29
Consensus pattern (54 bp):
ATATCAAATTACATTTGATGCCAACGTATTAAACTTGGACTTACTCGCACACAA
Found at i:76384939 original size:42 final size:42
Alignment explanation
Indices: 76384892--76384975 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
76384882 GGAGTAAGGA
*
76384892 ATTACTCCAAGGAAGCCGATTGATCCATCTCAGAAGTTGGAT
1 ATTACTCCAAGGAAGCCGATTGATCCATCTCAGAAGTCGGAT
76384934 ATTACTCCAAGGAAGCCGATTGATCCATCTCAGAAGTCGGAT
1 ATTACTCCAAGGAAGCCGATTGATCCATCTCAGAAGTCGGAT
76384976 TCATCATCAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (42 bp):
ATTACTCCAAGGAAGCCGATTGATCCATCTCAGAAGTCGGAT
Found at i:76386166 original size:17 final size:17
Alignment explanation
Indices: 76386144--76386187 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
76386134 CATGGCTTAT
*
76386144 TATTATTTTATGACATA
1 TATTATTTTATAACATA
*
76386161 TATTATATTATAACATA
1 TATTATTTTATAACATA
*
76386178 TATTAATTTA
1 TATTATTTTA
76386188 ATGTTTAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (17 bp):
TATTATTTTATAACATA
Found at i:76388103 original size:43 final size:43
Alignment explanation
Indices: 76388003--76388117 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 43
76387993 GTTTATTTGA
* * * *
76388003 AAAAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTTCT
1 AAAAACGCAGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCC
* * * *
76388046 AAAAACCCCA-CTAAAGATTACGACCTTTAGCGGCTCTTTTCCC
1 AAAAA-CGCAGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCC
*
76388089 AAAAACGCAGCTAAAAATCATGACCTTTA
1 AAAAACGCAGCTAAAGATCATGACCTTTA
76388118 AAAAAATTAT
Statistics
Matches: 58, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
42 3 0.05
43 53 0.91
44 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (43 bp):
AAAAACGCAGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCC
Found at i:76389577 original size:15 final size:16
Alignment explanation
Indices: 76389552--76389582 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
76389542 TCTCTCTTGC
76389552 TTTTAAATCATATATA
1 TTTTAAATCATATATA
76389568 TTTT-AATCATATATA
1 TTTTAAATCATATATA
76389583 AGACAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (16 bp):
TTTTAAATCATATATA
Found at i:76392866 original size:40 final size:40
Alignment explanation
Indices: 76392770--76392949 Score: 240
Period size: 40 Copynumber: 4.5 Consensus size: 40
76392760 TATTCGGATG
76392770 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTTGCT
*
76392813 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
**
76392853 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* *
76392893 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
*
76392933 ATATCC-GGCTAAATCCC
1 ATATCCGGGCTAAGTCCC
76392950 AAAGATACTT
Statistics
Matches: 125, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
39 11 0.09
40 81 0.65
41 2 0.02
43 31 0.25
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
Found at i:76403964 original size:40 final size:40
Alignment explanation
Indices: 76403826--76404010 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
76403816 TTGAATGATG
* * * * *
76403826 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
76403866 TCCGGACTAAGAT-CCGAAAGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
76403906 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76403945 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
76403986 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
76404011 AACAAGTAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
38 1 0.01
39 34 0.27
40 82 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76403968 original size:79 final size:81
Alignment explanation
Indices: 76403827--76404010 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 81
76403817 TGAATGATGT
*
76403827 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAAGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAAGCATTT
76403891 GTGCGAGTTACTA-AA
66 GTGCGAGTTACTATAA
* * * * * * *
76403906 TCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCAGG-TTAAG-TCCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCC-GGACTAAGAT-CCGAAAGCAT
76403968 TTGTGCGAGTTACTATAA
64 TTGTGCGAGTTACTATAA
*
76403986 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
76404011 AACAAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAAGCATTT
GTGCGAGTTACTATAA
Found at i:76404032 original size:79 final size:77
Alignment explanation
Indices: 76403827--76404043 Score: 233
Period size: 79 Copynumber: 2.7 Consensus size: 77
76403817 TGAATGATGT
* * *
76403827 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACCATATCCGGACTAAGATCCGAAAGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
76403890 TGTGCGAGTTACTAAA
62 TGTGCGAGTTACTAAA
* * * *
76403906 TCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAATCCAGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
76403970 GTGCGAGTTACTATAA
63 GTGCGAGTTACTA-AA
* ** *
76403986 CCGGGCTATGTCCCGAAGGCATTTGAACAAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGTT-AAGTCCGAAGG
76404044 TACGTGATTT
Statistics
Matches: 115, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
78 1 0.01
79 67 0.58
80 47 0.41
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (77 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAAA
Found at i:76413714 original size:79 final size:81
Alignment explanation
Indices: 76413578--76413762 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
76413568 TTGAATGATG
*
76413578 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
76413642 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
76413657 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
76413719 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
76413737 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76413763 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:76413776 original size:40 final size:40
Alignment explanation
Indices: 76413579--76413762 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
76413569 TGAATGATGT
* * * *
76413579 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
76413619 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
76413659 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
76413697 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
76413738 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
76413763 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:76413784 original size:79 final size:79
Alignment explanation
Indices: 76413631--76413785 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
76413621 GGACTAAGAT
* **
76413631 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
76413696 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
76413710 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
76413773 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
76413786 ATTTCGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.60
80 25 0.37
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:76420940 original size:12 final size:12
Alignment explanation
Indices: 76420923--76420947 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76420913 GGTGTTCATT
76420923 CGGTTAACCGAC
1 CGGTTAACCGAC
76420935 CGGTTAACCGAC
1 CGGTTAACCGAC
76420947 C
1 C
76420948 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:76421114 original size:9 final size:9
Alignment explanation
Indices: 76421096--76421146 Score: 84
Period size: 9 Copynumber: 5.7 Consensus size: 9
76421086 TTTGGTTAAA
76421096 AATTACCCG
1 AATTACCCG
*
76421105 AATTATCCG
1 AATTACCCG
76421114 AATTACCCG
1 AATTACCCG
76421123 AATTACCCG
1 AATTACCCG
*
76421132 AATTAACCG
1 AATTACCCG
76421141 AATTAC
1 AATTAC
76421147 AGAAAAATAC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 38 1.00
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.25
Consensus pattern (9 bp):
AATTACCCG
Found at i:76421981 original size:40 final size:40
Alignment explanation
Indices: 76421891--76422075 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
76421881 TTGAATGATG
* * *
76421891 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
** *
76421930 ATCCGAACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
76421971 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
76422010 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
76422049 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
76422076 AACAAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:76422027 original size:79 final size:81
Alignment explanation
Indices: 76421891--76422075 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
76421881 TTGAATGATG
*
76421891 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGAACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGAACTAAGATCCGAAGGCATT
76421955 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * ***
76421970 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGAACTAAGAT-CCGAAGGCA
*
76422032 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
76422050 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76422076 AACAAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 56 0.62
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGAACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:76422098 original size:79 final size:79
Alignment explanation
Indices: 76421892--76422108 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
76421882 TGAATGATGT
** * * * **
76421892 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGAACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-AAGTTACTAAATCCGAGTTAA-ATCCCGAAGGCATT
*
76421955 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
76421972 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACAAGTTACTAAATCCGAGTTAAATCCCGAAGGCATTTGT
*
76422037 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
76422051 CCGGGCTATGTCCCGAAGGCATTTGAACAAG-TAGCTATATCC-AGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACAAGTTA-CTAAATCCGAGTTAAATCCCGAAGG
76422109 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 4 0.03
79 71 0.61
80 41 0.35
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACAAGTTACTAAATCCGAGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:76426391 original size:40 final size:40
Alignment explanation
Indices: 76426336--76426559 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
76426326 TATTCGGATG
*
76426336 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
76426376 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
76426419 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
76426459 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
76426499 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
76426539 ATAT-CTGGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
76426560 ATACTTGGGT
Statistics
Matches: 161, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 14 0.09
40 110 0.68
41 1 0.01
43 36 0.22
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:76426481 original size:83 final size:80
Alignment explanation
Indices: 76426342--76426559 Score: 280
Period size: 83 Copynumber: 2.7 Consensus size: 80
76426332 GATGATATCT
* * **
76426342 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCTGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATG
76426407 CGAGTAGTTG-CTATACCC
66 C---TAG-TGACTATACCC
*
76426425 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATG
*
76426490 CTAGTGACTATATCC
66 CTAGTGACTATACCC
* * * *
76426505 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT-CTGGCTAAATCCCGAAG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
76426560 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
79 17 0.14
80 43 0.35
81 2 0.02
83 61 0.50
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATG
CTAGTGACTATACCC
Found at i:76428118 original size:19 final size:19
Alignment explanation
Indices: 76428096--76428215 Score: 79
Period size: 19 Copynumber: 6.2 Consensus size: 19
76428086 CTAAATAGAA
76428096 ATAAAAATATATAATATAT
1 ATAAAAATATATAATATAT
76428115 ATAAAAATATATATAATAATAAT
1 AT-AAAA-ATATATAAT-AT-AT
* *
76428138 ATATAAATATA-AAAATAAT
1 ATAAAAATATATAATAT-AT
*
76428157 ATATAAAT-TATAA-ATAT
1 ATAAAAATATATAATATAT
* *
76428174 ATAAATTATAAATAGATA-AT
1 ATAAA-AATATATA-ATATAT
* *
76428194 ATAATAATAGATAATATA-
1 ATAAAAATATATAATATAT
76428212 ATAA
1 ATAA
76428216 TAGATAGAAT
Statistics
Matches: 83, Mismatches: 8, Indels: 21
0.74 0.07 0.19
Matches are distributed among these distances:
17 6 0.07
18 13 0.16
19 27 0.33
20 13 0.16
21 15 0.18
22 5 0.06
23 4 0.05
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (19 bp):
ATAAAAATATATAATATAT
Found at i:76428133 original size:34 final size:33
Alignment explanation
Indices: 76428095--76428243 Score: 114
Period size: 34 Copynumber: 4.6 Consensus size: 33
76428085 ACTAAATAGA
76428095 AATAAAAATATATAATATATATAAAAATATATAT
1 AATAAAAATATATAATATATATAAAAATATA-AT
* *
76428129 AATAATAATATATAA-ATATAAAAATAATAT-AT
1 AATAAAAATATATAATATATATAAA-AATATAAT
* * *
76428161 AAATTATAAATATATAA-AT-TATAAATAGATAAT
1 -AA-TAAAAATATATAATATATATAAAAATATAAT
* * * *
76428194 -ATAATAATAGATAATATA-ATAATAGATAGAAT
1 AATAAAAATATATAATATATATAA-AAATATAAT
*
76428226 AAT-AAAATAAATAATATA
1 AATAAAAATATATAATATA
76428244 GAAATATAGA
Statistics
Matches: 92, Mismatches: 15, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
30 10 0.11
31 7 0.08
32 24 0.26
33 19 0.21
34 32 0.35
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.34
Consensus pattern (33 bp):
AATAAAAATATATAATATATATAAAAATATAAT
Found at i:76428138 original size:15 final size:15
Alignment explanation
Indices: 76428101--76428241 Score: 85
Period size: 15 Copynumber: 9.3 Consensus size: 15
76428091 TAGAAATAAA
76428101 AATATATAATATATAT
1 AATA-ATAATATATAT
*
76428117 AAAAAT-ATATATAAT
1 AATAATAATATAT-AT
*
76428132 AATAATATATAAATAT
1 AATAATA-ATATATAT
*
76428148 AAAAATAATATATA-
1 AATAATAATATATAT
*
76428162 AATTATAA-ATATAT
1 AATAATAATATATAT
* *
76428176 AAATTATAA-ATAGAT
1 -AATAATAATATATAT
*
76428191 AAT-ATAATAATAGAT
1 AATAATAAT-ATATAT
* *
76428206 AATATAATAATAGATAG
1 -A-ATAATAATATATAT
* *
76428223 AATAATAAAATAAAT
1 AATAATAATATATAT
76428238 AATA
1 AATA
76428242 TAGAAATATA
Statistics
Matches: 100, Mismatches: 15, Indels: 21
0.74 0.11 0.15
Matches are distributed among these distances:
13 9 0.09
14 15 0.15
15 48 0.48
16 13 0.13
17 10 0.10
18 5 0.05
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (15 bp):
AATAATAATATATAT
Found at i:76429019 original size:46 final size:45
Alignment explanation
Indices: 76428891--76429021 Score: 183
Period size: 46 Copynumber: 2.9 Consensus size: 45
76428881 TTTGACTTGA
* * * *
76428891 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATAGTATCTTTCAACCATGGTCTTACACA-TTTCTATCATGT
76428937 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCA-GAT
1 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTC-TATCATG-T
*
76428983 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTA
1 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCTA
76429022 GTGAAACAGG
Statistics
Matches: 78, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
45 7 0.09
46 71 0.91
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (45 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCTATCATGT
Found at i:76431492 original size:7 final size:7
Alignment explanation
Indices: 76431482--76431518 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
76431472 TTTTTAATTG
*
76431482 AAATATG
1 AAATATT
76431489 AAATA--
1 AAATATT
76431494 AAATATT
1 AAATATT
76431501 AAATATT
1 AAATATT
76431508 AAATATT
1 AAATATT
76431515 AAAT
1 AAAT
76431519 TTTTAAGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 5 0.18
7 23 0.82
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (7 bp):
AAATATT
Found at i:76431532 original size:9 final size:9
Alignment explanation
Indices: 76431518--76431571 Score: 58
Period size: 9 Copynumber: 6.2 Consensus size: 9
76431508 AAATATTAAA
*
76431518 TTTTTAAGT
1 TTTTTAATT
76431527 TTTTT-ATT
1 TTTTTAATT
76431535 TTTTT-ATT
1 TTTTTAATT
*
76431543 TTTTTATTT
1 TTTTTAATT
*
76431552 TTTTTAAAT
1 TTTTTAATT
*
76431561 TTTTAAATT
1 TTTTTAATT
76431570 TT
1 TT
76431572 AAATTTTAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
8 15 0.39
9 23 0.61
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (9 bp):
TTTTTAATT
Found at i:76431536 original size:7 final size:8
Alignment explanation
Indices: 76431526--76431555 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
76431516 AATTTTTAAG
76431526 TTTTTTAT
1 TTTTTTAT
76431534 TTTTTTAT
1 TTTTTTAT
76431542 TTTTTTAT
1 TTTTTTAT
76431550 TTTTTT
1 TTTTTT
76431556 TAAATTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (8 bp):
TTTTTTAT
Found at i:76431563 original size:17 final size:18
Alignment explanation
Indices: 76431518--76431571 Score: 58
Period size: 17 Copynumber: 3.1 Consensus size: 18
76431508 AAATATTAAA
*
76431518 TTTTTAAGTTTTT-TATT
1 TTTTTAAATTTTTATATT
**
76431535 TTTTTATTTTTTTAT-TT
1 TTTTTAAATTTTTATATT
*
76431552 TTTTTAAATTTTTAAATT
1 TTTTTAAATTTTTATATT
76431570 TT
1 TT
76431572 AAATTTTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
17 25 0.83
18 5 0.17
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (18 bp):
TTTTTAAATTTTTATATT
Found at i:76431571 original size:15 final size:15
Alignment explanation
Indices: 76431553--76431583 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
76431543 TTTTTATTTT
*
76431553 TTTTAAATTTTTAAA
1 TTTTAAATTTTAAAA
76431568 TTTTAAATTTTAAAA
1 TTTTAAATTTTAAAA
76431583 T
1 T
76431584 CTTTTTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTTTAAATTTTAAAA
Found at i:76432313 original size:7 final size:7
Alignment explanation
Indices: 76432284--76432421 Score: 61
Period size: 7 Copynumber: 19.6 Consensus size: 7
76432274 ATCTAAGCCT
76432284 TAAACCCC
1 TAAA-CCC
76432292 T-AACCC
1 TAAACCC
*
76432298 TTAACCCC
1 -TAAACCC
76432306 TAAACCC
1 TAAACCC
*
76432313 TAAATCC
1 TAAACCC
*
76432320 TAAA-CA
1 TAAACCC
* *
76432326 TAATCTC
1 TAAACCC
76432333 TAAACCC
1 TAAACCC
*
76432340 TAAAAACC
1 T-AAACCC
76432348 T-AACCC
1 TAAACCC
*
76432354 TTAACCC
1 TAAACCC
*
76432361 TTAACCCC
1 -TAAACCC
* *
76432369 TAAGCCT
1 TAAACCC
76432376 TAAATCCC
1 TAAA-CCC
76432384 --AACCC
1 TAAACCC
*
76432389 TTAAACCA
1 -TAAACCC
*
76432397 TAAACCA
1 TAAACCC
*
76432404 TAATCCC
1 TAAACCC
*
76432411 TAAACCT
1 TAAACCC
76432418 TAAA
1 TAAA
76432422 ACAATAACTC
Statistics
Matches: 98, Mismatches: 22, Indels: 21
0.70 0.16 0.15
Matches are distributed among these distances:
5 3 0.03
6 14 0.14
7 59 0.60
8 22 0.22
ACGTcount: A:0.41, C:0.37, G:0.01, T:0.22
Consensus pattern (7 bp):
TAAACCC
Found at i:76432423 original size:29 final size:28
Alignment explanation
Indices: 76432378--76432459 Score: 80
Period size: 29 Copynumber: 2.9 Consensus size: 28
76432368 CTAAGCCTTA
*
76432378 AATCCC-AACCCTTAAACCATAAACCAT
1 AATCCCTAAACCTTAAACCATAAACCAT
*
76432405 AATCCCTAAACCTTAAAACA-ATAACTCAT
1 AATCCCTAAACCTTAAACCATA-AAC-CAT
**
76432434 ACA-CTTTAAACCTTAAACCATAAACC
1 A-ATCCCTAAACCTTAAACCATAAACC
76432460 CTAAACTATA
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
27 7 0.16
28 15 0.33
29 21 0.47
30 2 0.04
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.22
Consensus pattern (28 bp):
AATCCCTAAACCTTAAACCATAAACCAT
Found at i:76432459 original size:14 final size:14
Alignment explanation
Indices: 76432387--76432470 Score: 53
Period size: 14 Copynumber: 5.9 Consensus size: 14
76432377 AAATCCCAAC
76432387 CCTTAAACCATAAA
1 CCTTAAACCATAAA
* * *
76432401 CCATAATCCCTAAA
1 CCTTAAACCATAAA
*
76432415 CCTTAAAACA-ATAA
1 CCTTAAACCATA-AA
* * **
76432429 CTCATACACTTTAAA
1 C-CTTAAACCATAAA
76432444 CCTTAAACCATAAA
1 CCTTAAACCATAAA
* *
76432458 CCCTAAACTATAA
1 CCTTAAACCATAA
76432471 TGATAATTAA
Statistics
Matches: 49, Mismatches: 18, Indels: 6
0.67 0.25 0.08
Matches are distributed among these distances:
13 1 0.02
14 40 0.82
15 7 0.14
16 1 0.02
ACGTcount: A:0.48, C:0.29, G:0.00, T:0.24
Consensus pattern (14 bp):
CCTTAAACCATAAA
Done.