Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 231 of 344
Found at i:76432575 original size:7 final size:7
Alignment explanation
Indices: 76432563--76432683 Score: 75
Period size: 7 Copynumber: 17.0 Consensus size: 7
76432553 TTTAATTAAT
76432563 CTAAACC
1 CTAAACC
76432570 CTAAACTC
1 CTAAAC-C
* *
76432578 ATAATCC
1 CTAAACC
*
76432585 TTAAACC
1 CTAAACC
*
76432592 ATAAACC
1 CTAAACC
* *
76432599 ATAAATC
1 CTAAACC
*
76432606 CTAAAAC
1 CTAAACC
*
76432613 ATAAACC
1 CTAAACC
76432620 CTAAACC
1 CTAAACC
76432627 CTAAACC
1 CTAAACC
76432634 ACT-AACC
1 -CTAAACC
*
76432641 CTTAACC
1 CTAAACC
* *
76432648 TTTAACCC
1 -CTAAACC
76432656 CTAAACC
1 CTAAACC
*
76432663 TTAAACC
1 CTAAACC
*
76432670 C-CAACC
1 CTAAACC
76432676 CTTAAACC
1 C-TAAACC
76432684 ACCATTAAAC
Statistics
Matches: 88, Mismatches: 20, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
6 7 0.08
7 66 0.75
8 15 0.17
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:76432603 original size:14 final size:14
Alignment explanation
Indices: 76432564--76432799 Score: 68
Period size: 14 Copynumber: 16.2 Consensus size: 14
76432554 TTAATTAATC
*
76432564 TAAACCCTAAACTCA
1 TAAACCATAAAC-CA
* *
76432579 TAATCCTTAAACCA
1 TAAACCATAAACCA
76432593 TAAACCATAAATCC-
1 TAAACCATAAA-CCA
* *
76432607 TAAAACATAAACCC
1 TAAACCATAAACCA
*
76432621 TAAACCCTAAACCA
1 TAAACCATAAACCA
* * *
76432635 CT-AACCCTTAACCTT
1 -TAAACCATAAACC-A
* * *
76432650 TAACCCCTAAACCT
1 TAAACCATAAACCA
** * *
76432664 TAAACCCCAACCCT
1 TAAACCATAAACCA
76432678 TAAACCACCATTAAACCA
1 T-AA--ACCA-TAAACCA
*
76432696 TAATCCATAAACCCA
1 TAAACCATAAA-CCA
*
76432711 TAATCCATAAACCCA
1 TAAACCATAAA-CCA
** *
76432726 TAATTCATAAACCT
1 TAAACCATAAACCA
76432740 TAAA--ATAGTAACTCA
1 TAAACCATA--AAC-CA
*
76432755 TAAA-CATTAAACCC
1 TAAACCA-TAAACCA
* * *
76432769 TTAACCATATACCG
1 TAAACCATAAACCA
* *
76432783 TAAACCCTAAACTA
1 TAAACCATAAACCA
76432797 TAA
1 TAA
76432800 TGATAATTAA
Statistics
Matches: 172, Mismatches: 33, Indels: 33
0.72 0.14 0.14
Matches are distributed among these distances:
12 3 0.02
13 2 0.01
14 89 0.52
15 65 0.38
16 1 0.01
17 7 0.04
18 5 0.03
ACGTcount: A:0.45, C:0.31, G:0.01, T:0.22
Consensus pattern (14 bp):
TAAACCATAAACCA
Found at i:76432610 original size:21 final size:21
Alignment explanation
Indices: 76432563--76432634 Score: 83
Period size: 21 Copynumber: 3.4 Consensus size: 21
76432553 TTTAATTAAT
*
76432563 CTAAACCCTAAACTCAT-AATC
1 CTAAACCATAAAC-CATAAATC
76432584 CTTAAACCATAAACCATAAATC
1 C-TAAACCATAAACCATAAATC
* * *
76432606 CTAAAACATAAACCCTAAACC
1 CTAAACCATAAACCATAAATC
76432627 CTAAACCA
1 CTAAACCA
76432635 CTAACCCTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
21 28 0.64
22 16 0.36
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (21 bp):
CTAAACCATAAACCATAAATC
Found at i:76432711 original size:15 final size:15
Alignment explanation
Indices: 76432689--76432738 Score: 84
Period size: 15 Copynumber: 3.4 Consensus size: 15
76432679 AAACCACCAT
76432689 TAAA-CCATAATCCA
1 TAAACCCATAATCCA
76432703 TAAACCCATAATCCA
1 TAAACCCATAATCCA
*
76432718 TAAACCCATAATTCA
1 TAAACCCATAATCCA
76432733 TAAACC
1 TAAACC
76432739 TTAAAATAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
14 4 0.12
15 30 0.88
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:76433030 original size:41 final size:40
Alignment explanation
Indices: 76432949--76433056 Score: 126
Period size: 41 Copynumber: 2.7 Consensus size: 40
76432939 TTCATTTTTT
* * *
76432949 GTGGCGTTTTTCAAAAAGAGCCGCTAAAGGTGTACCTATA
1 GTGGCGTTTTTAAAAAAGCGCCGCTAAAGGAGTACCTATA
* * *
76432989 GTGGCGTTTCTTAAAAAAGCGCCACTAAATGAGTACTTATA
1 GTGGCGTTT-TTAAAAAAGCGCCGCTAAAGGAGTACCTATA
* * *
76433030 GCGGTGTTTTTTAAAAAGCGCCGCTAA
1 GTGGCGTTTTTAAAAAAGCGCCGCTAA
76433057 TACTTGATCT
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 25 0.44
41 32 0.56
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (40 bp):
GTGGCGTTTTTAAAAAAGCGCCGCTAAAGGAGTACCTATA
Found at i:76433235 original size:40 final size:40
Alignment explanation
Indices: 76433139--76433315 Score: 119
Period size: 40 Copynumber: 4.4 Consensus size: 40
76433129 TATGCAAAAT
* * * * *
76433139 TCTTTTGCGGCGTTTTTCAAAAAGCGCCGCTAA-AGGTG-
1 TCTTTAGCGGCATTTTTTAAAAAGCACCGCTAATAGTTGA
* * * *
76433177 TACATATAGTGGCGTTTTTAAAAAAGCACCGCTAATAGTTGA
1 T-C-TTTAGCGGCATTTTTTAAAAAGCACCGCTAATAGTTGA
* ** * *
76433219 TCTTTAGCAGCATTTTTTGTAAAG-AGCCGCTAATACTCGA
1 TCTTTAGCGGCATTTTTTAAAAAGCA-CCGCTAATAGTTGA
* * * * *
76433259 TCTTTAGCGGCGTTTTTTAAAAAGCGCTGCTAAT-GCTCA
1 TCTTTAGCGGCATTTTTTAAAAAGCACCGCTAATAGTTGA
76433298 TTCTTTAGCGGCATTTTT
1 -TCTTTAGCGGCATTTTT
76433316 CATTCAAACG
Statistics
Matches: 106, Mismatches: 26, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
38 1 0.01
39 3 0.03
40 96 0.91
41 5 0.05
42 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (40 bp):
TCTTTAGCGGCATTTTTTAAAAAGCACCGCTAATAGTTGA
Found at i:76436744 original size:56 final size:56
Alignment explanation
Indices: 76436684--76436897 Score: 272
Period size: 56 Copynumber: 3.8 Consensus size: 56
76436674 CAAACAGGGT
* * * *
76436684 CTTACTCATAAACACATATCAGAATCACATATCGATGCCAACATATGAAACGTGGA
1 CTTACTCACACACATATATCAGAATCACATATCGATGCCAACATATTAAACGTGGA
* **
76436740 CTTACTCGCACACATATATCAGAATCACATATCGATGCCAATGTATTAAACGTGGA
1 CTTACTCACACACATATATCAGAATCACATATCGATGCCAACATATTAAACGTGGA
* * *
76436796 CTTACTCGA-ACACATATATCTGAATCACATATCGATGCCAACGTATTAAACGTGGT
1 CTTACTC-ACACACATATATCAGAATCACATATCGATGCCAACATATTAAACGTGGA
** *
76436852 CTTACTGGCACACATATATCA-AAGTAACATATCGATGCC-ACATATT
1 CTTACTCACACACATATATCAGAA-TCACATATCGATGCCAACATATT
76436898 CTTCTAGGTA
Statistics
Matches: 139, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
55 8 0.06
56 131 0.94
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (56 bp):
CTTACTCACACACATATATCAGAATCACATATCGATGCCAACATATTAAACGTGGA
Found at i:76437488 original size:19 final size:19
Alignment explanation
Indices: 76437452--76437490 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
76437442 CATGGCTTAT
* * *
76437452 TATTATTTTATGATATATA
1 TATTATATTATAACATATA
76437471 TATTATATTATAACATATA
1 TATTATATTATAACATATA
76437490 T
1 T
76437491 TAATTTAATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (19 bp):
TATTATATTATAACATATA
Found at i:76463974 original size:28 final size:27
Alignment explanation
Indices: 76463924--76463976 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
76463914 CTATTCAGAA
* *
76463924 ATCAGTGTTAACTGGGCCTTAGCCCAT
1 ATCAATGTTAACTGGGCCATAGCCCAT
76463951 ATCAATGTTAATCTGGGCCATAGCCC
1 ATCAATGTTAA-CTGGGCCATAGCCC
76463977 CTTACAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (27 bp):
ATCAATGTTAACTGGGCCATAGCCCAT
Found at i:76464001 original size:61 final size:61
Alignment explanation
Indices: 76463936--76464072 Score: 176
Period size: 60 Copynumber: 2.3 Consensus size: 61
76463926 CAGTGTTAAC
* *
76463936 TGGGCCTTAGCCCATATCAATGTTAATCTGGGCCATAGCCC-CTTAC-AGT-ATCAGAGTATAT
1 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACAAGTCA--AGA-TATAT
* *
76463997 TGGGCC-TAGCCCATATCAGTATTAATCTGGGCCGTAGCCCTATTACAAGTCAAGATATAT
1 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACAAGTCAAGATATAT
76464057 TGGGCCTT-GCCCATAT
1 TGGGCCTTAGCCCATAT
76464073 GAACACAGTT
Statistics
Matches: 68, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
60 50 0.74
61 14 0.21
62 3 0.04
63 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (61 bp):
TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACAAGTCAAGATATAT
Found at i:76464029 original size:27 final size:28
Alignment explanation
Indices: 76463924--76464036 Score: 81
Period size: 27 Copynumber: 3.9 Consensus size: 28
76463914 CTATTCAGAA
* *
76463924 ATCAGTGTTAA-CTGGGCCTTAGCCCAT
1 ATCAGTATTAATCTGGGCCATAGCCCAT
* *
76463951 ATCAATGTTAATCTGGGCCATAGCCCCTTACAGT
1 ATCAGTATTAATCTGGGCCATAG--CC---CA-T
*
76463985 ATCAG-AGTATAT-TGGGCC-TAGCCCAT
1 ATCAGTATTA-ATCTGGGCCATAGCCCAT
*
76464011 ATCAGTATTAATCTGGGCCGTAGCCC
1 ATCAGTATTAATCTGGGCCATAGCCC
76464037 TATTACAAGT
Statistics
Matches: 69, Mismatches: 6, Indels: 21
0.72 0.06 0.22
Matches are distributed among these distances:
26 8 0.12
27 21 0.30
28 16 0.23
30 4 0.06
32 3 0.04
33 10 0.14
34 7 0.10
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (28 bp):
ATCAGTATTAATCTGGGCCATAGCCCAT
Found at i:76464090 original size:20 final size:19
Alignment explanation
Indices: 76464065--76464120 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
76464055 ATTGGGCCTT
* *
76464065 GCCCATATGAACACAGTTGG
1 GCCCATATCAAAACAGTT-G
*
76464085 GCCCATTTCAAAACAGTTG
1 GCCCATATCAAAACAGTTG
*
76464104 GCCCATAACAAAACAGT
1 GCCCATATCAAAACAGT
76464121 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.20
Consensus pattern (19 bp):
GCCCATATCAAAACAGTTG
Found at i:76467033 original size:3 final size:3
Alignment explanation
Indices: 76467025--76467053 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
76467015 AAACATACTA
76467025 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
76467054 CGTCCAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:76467245 original size:21 final size:21
Alignment explanation
Indices: 76467221--76467262 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
76467211 TTGCTCAAGG
76467221 AAAGCCGATCGATCCATTTCA
1 AAAGCCGATCGATCCATTTCA
76467242 AAAGCCGATCGATCCATTTCA
1 AAAGCCGATCGATCCATTTCA
76467263 GAAGTCGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.24
Consensus pattern (21 bp):
AAAGCCGATCGATCCATTTCA
Found at i:76469891 original size:22 final size:22
Alignment explanation
Indices: 76469863--76469937 Score: 141
Period size: 22 Copynumber: 3.4 Consensus size: 22
76469853 AGCAAAAACG
76469863 GTAAGCTCATACGAGCTGAACA
1 GTAAGCTCATACGAGCTGAACA
76469885 GTAAGCTCATACGAGCTGAACA
1 GTAAGCTCATACGAGCTGAACA
76469907 GTAAGCTCATACGAGCTGAAACA
1 GTAAGCTCATACGAGCTG-AACA
76469930 GTAAGCTC
1 GTAAGCTC
76469938 CAATGAGCTG
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
22 40 0.77
23 12 0.23
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.19
Consensus pattern (22 bp):
GTAAGCTCATACGAGCTGAACA
Found at i:76469946 original size:45 final size:45
Alignment explanation
Indices: 76469827--76469984 Score: 142
Period size: 45 Copynumber: 3.4 Consensus size: 45
76469817 AGCTCCTCAT
* * ** *
76469827 GAGCTGATGAACAGTAAGCTCTATTGAGCAAAAACGGTAAGCTCATAC
1 GAGCTGA--AACAGTAAGCTCCAATGAGC-TGAACAGTAAGCTCATAC
*
76469875 GAGCTG-AACAGTAAGCT-CATACGAGCTGAACAGTAAGCTCATAC
1 GAGCTGAAACAGTAAGCTCCA-ATGAGCTGAACAGTAAGCTCATAC
* *
76469919 GAGCTGAAACAGTAAGCTCCAATGAGCTGAAAATAGTAAGCTCCA-AT
1 GAGCTGAAACAGTAAGCTCCAATGAGCTG--AACAGTAAGCT-CATAC
*
76469966 GAGCTGAAAATAGTAAGCT
1 GAGCTG-AAACAGTAAGCT
76469985 TTTACGAGCT
Statistics
Matches: 93, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
44 22 0.24
45 33 0.35
46 2 0.02
47 17 0.18
48 19 0.20
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.20
Consensus pattern (45 bp):
GAGCTGAAACAGTAAGCTCCAATGAGCTGAACAGTAAGCTCATAC
Found at i:76469993 original size:24 final size:23
Alignment explanation
Indices: 76469827--76470018 Score: 160
Period size: 24 Copynumber: 8.1 Consensus size: 23
76469817 AGCTCCTCAT
*
76469827 GAGCTGATGAACAGTAAGCTC-TATT
1 GAGCTGA--AACAGTAAGCTCATA-C
** *
76469852 GAGCAAAAACGGTAAGCTCATAC
1 GAGCTGAAACAGTAAGCTCATAC
76469875 GAGCTG-AACAGTAAGCTCATAC
1 GAGCTGAAACAGTAAGCTCATAC
76469897 GAGCTG-AACAGTAAGCTCATAC
1 GAGCTGAAACAGTAAGCTCATAC
*
76469919 GAGCTGAAACAGTAAGCTCCA-AT
1 GAGCTGAAACAGTAAGCT-CATAC
* *
76469942 GAGCTGAAAATAGTAAGCTCCA-AT
1 GAGCTG-AAACAGTAAGCT-CATAC
* **
76469966 GAGCTGAAAATAGTAAGCTTTTAC
1 GAGCTG-AAACAGTAAGCTCATAC
*
76469990 GAGCTGATATACCGGTAAGCTCATAC
1 GAGCTGA-A-A-CAGTAAGCTCATAC
76470016 GAG
1 GAG
76470019 TTATGGTCAG
Statistics
Matches: 143, Mismatches: 16, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
22 43 0.30
23 34 0.24
24 47 0.33
25 6 0.04
26 13 0.09
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTCATAC
Found at i:76474220 original size:40 final size:40
Alignment explanation
Indices: 76474153--76474396 Score: 253
Period size: 40 Copynumber: 6.1 Consensus size: 40
76474143 CGGAATTTAA
** *
76474153 CCGGATATAGCT-ACTCGCTTAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
76474193 CCGGTTAGAGTAACTCGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
76474233 CCGGATTTAGTAATTCGCACAAATGCCTTCGGGACGT-GC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
76474272 CCGGATATAGTAACTTGCACAAAGGCCTTTGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
76474312 CCGGGATATAGTAGCTCGCACGAATGCCTCCGGGACTTAGC
1 CC-GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** * *
76474353 CCGGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCT-TCGGGACTTAGC
76474393 CCGG
1 CCGG
76474397 TTATCATCTG
Statistics
Matches: 168, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
39 37 0.22
40 97 0.58
41 34 0.20
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:76475731 original size:6 final size:6
Alignment explanation
Indices: 76475720--76475761 Score: 59
Period size: 6 Copynumber: 6.8 Consensus size: 6
76475710 ACATGAGAGC
76475720 TTTCTT TTTCTT TTTCTT TTT-TT CTTTCTT TTTCTT TCTTCT
1 TTTCTT TTTCTT TTTCTT TTTCTT -TTTCTT TTTCTT T-TTCT
76475762 ATTCGGCTAG
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
5 2 0.06
6 25 0.76
7 6 0.18
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTCTT
Found at i:76475751 original size:10 final size:10
Alignment explanation
Indices: 76475726--76475759 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
76475716 GAGCTTTCTT
76475726 TTTCTTTTTC
1 TTTCTTTTTC
76475736 -TT-TTTTTC
1 TTTCTTTTTC
76475744 TTTCTTTTTC
1 TTTCTTTTTC
76475754 TTTCTT
1 TTTCTT
76475760 CTATTCGGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 6 0.27
9 4 0.18
10 12 0.55
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTCTTTTTC
Found at i:76486788 original size:43 final size:43
Alignment explanation
Indices: 76486740--76486915 Score: 284
Period size: 43 Copynumber: 4.1 Consensus size: 43
76486730 CCGGCTTTAC
*
76486740 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
*
76486783 GCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
76486826 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
* * * *
76486869 GCCTGCTAGGCACAAAGGCCCGAATATA-AT-ACCAGCACTAG
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
76486910 GCCTGC
1 GCCTGC
76486916 GGGATTTAAC
Statistics
Matches: 126, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
41 15 0.12
42 2 0.02
43 109 0.87
ACGTcount: A:0.30, C:0.34, G:0.24, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
Found at i:76497876 original size:29 final size:29
Alignment explanation
Indices: 76497780--76497879 Score: 121
Period size: 29 Copynumber: 3.5 Consensus size: 29
76497770 TACTTGTATC
* * * *
76497780 TGGCCTATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* * *
76497808 TGGCCCATTAAGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
76497837 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
*
76497866 TGGCCCGTTAGGCC
1 TGGCCCATTAGGCC
76497880 TAGCCACATT
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
28 14 0.23
29 48 0.77
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:76498117 original size:8 final size:8
Alignment explanation
Indices: 76498104--76498147 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
76498094 TGAGCCAAAC
76498104 TTTCGGCA
1 TTTCGGCA
76498112 TTTCGGCA
1 TTTCGGCA
* *
76498120 TTTAGGCT
1 TTTCGGCA
*
76498128 TTTCGACA
1 TTTCGGCA
*
76498136 TTTCGGTA
1 TTTCGGCA
76498144 TTTC
1 TTTC
76498148 AGCTTTTGCC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.14, C:0.20, G:0.20, T:0.45
Consensus pattern (8 bp):
TTTCGGCA
Found at i:76498137 original size:24 final size:24
Alignment explanation
Indices: 76498104--76498154 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
76498094 TGAGCCAAAC
*
76498104 TTTCGGCATTTCGGCATTT-AGGCT
1 TTTCGACATTTCGGCATTTCA-GCT
*
76498128 TTTCGACATTTCGGTATTTCAGCT
1 TTTCGACATTTCGGCATTTCAGCT
76498152 TTT
1 TTT
76498155 GCCGATTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.14, C:0.20, G:0.20, T:0.47
Consensus pattern (24 bp):
TTTCGACATTTCGGCATTTCAGCT
Found at i:76499420 original size:16 final size:16
Alignment explanation
Indices: 76499396--76499427 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
76499386 AAGTTCGGGA
*
76499396 TTTCGGGATTTTTGGG
1 TTTCAGGATTTTTGGG
76499412 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
76499428 GCGTTACAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:76504006 original size:21 final size:21
Alignment explanation
Indices: 76503970--76504064 Score: 100
Period size: 21 Copynumber: 4.5 Consensus size: 21
76503960 GCACGGGCTA
** * *
76503970 TTCACACGGGTGTGTGCGCCC
1 TTCACACGGGCATGTGAGGCC
*
76503991 TTTACACGGGCATGTGAGGCC
1 TTCACACGGGCATGTGAGGCC
*
76504012 TTCACACAGGCATGTGAGGCC
1 TTCACACGGGCATGTGAGGCC
* *
76504033 TTCACACTGGCATGTGTGGCC
1 TTCACACGGGCATGTGAGGCC
* *
76504054 TCCACATGGGC
1 TTCACACGGGC
76504065 GTGTAGACCC
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 62 1.00
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (21 bp):
TTCACACGGGCATGTGAGGCC
Found at i:76504318 original size:2 final size:2
Alignment explanation
Indices: 76504311--76504348 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
76504301 GATTAAGTGA
76504311 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
76504349 ACTATCTGGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:76511484 original size:21 final size:21
Alignment explanation
Indices: 76511455--76511495 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
76511445 GCTCCAATAG
76511455 AGTTAAAAGAATTGAAAGATC
1 AGTTAAAAGAATTGAAAGATC
* * *
76511476 AGTTGAAAGAGTTGACAGAT
1 AGTTAAAAGAATTGAAAGAT
76511496 AGAGGTATTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.05, G:0.24, T:0.24
Consensus pattern (21 bp):
AGTTAAAAGAATTGAAAGATC
Found at i:76525273 original size:46 final size:46
Alignment explanation
Indices: 76525143--76525358 Score: 242
Period size: 46 Copynumber: 4.7 Consensus size: 46
76525133 TGTGTGAGCT
* * * * *
76525143 AGTGTAAGACTTGTCTGGGACATGCATCAGCCAC-ATTATGTGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTAAGCC
* *
76525189 AATGTAAGACGATGTCTGGGACATGGCATCGGCCTCGAGACGTAAGCC
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCC
76525237 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
* * *
76525283 AGTGTAAGACATGTCTGGGACATGCATC-GACTACTAGATGT--GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCC
* *
76525327 AGTGTAAGACCATATCTGGGTCATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
76525359 TATAGATATG
Statistics
Matches: 149, Mismatches: 14, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
44 11 0.07
45 15 0.10
46 71 0.48
47 26 0.17
48 25 0.17
49 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
Found at i:76526672 original size:40 final size:40
Alignment explanation
Indices: 76526613--76526848 Score: 176
Period size: 40 Copynumber: 5.9 Consensus size: 40
76526603 TGAATACACG
* * * * *
76526613 TCACCAGCATGATTACTCTTCGGGACCTAGCCTGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * ** *
76526653 ACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
76526693 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * *
76526733 TCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * * *
76526773 GTAACTC-GCACCAATGC-CTT-TGGATCTTAGTCCGGATATGG
1 -TCAC-CAGCACGAATGCTCTTCGGGA-CTTAGCCCGGATAT-A
* *
76526814 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGA
76526849 CATCATTCGA
Statistics
Matches: 153, Mismatches: 37, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
39 3 0.02
40 133 0.87
41 17 0.11
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:76527195 original size:29 final size:29
Alignment explanation
Indices: 76527156--76527234 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
76527146 CTTAATAATC
*
76527156 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
76527186 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
76527215 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
76527235 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:76527277 original size:43 final size:43
Alignment explanation
Indices: 76527216--76527318 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
76527206 TGCATTTCAA
76527216 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
76527259 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
76527302 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
76527319 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:76529234 original size:37 final size:37
Alignment explanation
Indices: 76529184--76529262 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
76529174 TTATTACGAA
* * *
76529184 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
76529221 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
76529258 GTCTT
1 GTCTT
76529263 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:76529637 original size:47 final size:47
Alignment explanation
Indices: 76529380--76529980 Score: 854
Period size: 47 Copynumber: 12.7 Consensus size: 47
76529370 GCCCTTCGGG
*
76529380 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
76529430 ACTTTTACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
76529479 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT-T--
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
** * * * ** * * **** * *
76529523 --TTT-TTATTCATGAAAACTATCTATAAAAATAATTATATAGAATAGTATAC
1 ACTTTCACATTCATCACATC-GGCCAT--TAGGCCTTAT-CA-CATA-TATAC
76529573 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
76529620 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
76529667 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
76529714 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
76529761 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
76529808 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
76529855 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
76529902 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
76529949 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
76529981 ATACTATCAT
Statistics
Matches: 497, Mismatches: 42, Indels: 27
0.88 0.07 0.05
Matches are distributed among these distances:
41 9 0.02
42 6 0.01
44 5 0.01
45 1 0.00
46 4 0.01
47 362 0.73
48 4 0.01
49 82 0.16
50 9 0.02
52 6 0.01
53 9 0.02
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:76529871 original size:25 final size:25
Alignment explanation
Indices: 76529795--76529873 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
76529785 ATTAGGCCTT
*
76529795 ATCACATATATGCACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
76529820 ATCACAT-CGGCCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
76529842 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
76529867 ATCACAT
1 ATCACAT
76529874 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:76539674 original size:3 final size:3
Alignment explanation
Indices: 76539666--76539707 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
76539656 TGCATTTCTA
76539666 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
76539708 AATATAGTAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:76546032 original size:24 final size:24
Alignment explanation
Indices: 76546005--76546054 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
76545995 GTAAAGAATT
76546005 ATTGCGAGTTCCATAATCAAGAGG
1 ATTGCGAGTTCCATAATCAAGAGG
* *
76546029 ATTGCGAGTTCCATGATCAATAGG
1 ATTGCGAGTTCCATAATCAAGAGG
76546053 AT
1 AT
76546055 CACGAGATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (24 bp):
ATTGCGAGTTCCATAATCAAGAGG
Found at i:76546060 original size:24 final size:24
Alignment explanation
Indices: 76546009--76546060 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
76545999 AGAATTATTG
**
76546009 CGAGTTCCATAATCAAGAGGATTG
1 CGAGTTCCATAATCAAGAGGATCA
* *
76546033 CGAGTTCCATGATCAATAGGATCA
1 CGAGTTCCATAATCAAGAGGATCA
76546057 CGAG
1 CGAG
76546061 ATTCAGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (24 bp):
CGAGTTCCATAATCAAGAGGATCA
Found at i:76552450 original size:87 final size:87
Alignment explanation
Indices: 76552351--76552934 Score: 424
Period size: 87 Copynumber: 6.7 Consensus size: 87
76552341 AGCCTTATCT
* * * *
76552351 CCCTAAGCAGTAGGGTAACAGACCAAATT-ACAGATCTTATCTCCCTAAGCAGTGGTGGAGCAGA
1 CCCTAAACAGTAGGGTAACAGGCCAAATTCACAGATCTTAACTCCCTAAGCAGTAG-GGAGCAGA
* ** *
76552415 TCGAAGATTGAGAAATCTTAACC
65 TCGAAGATTGACAAGCCTTAAAC
*** * * * *
76552438 CCCTAAACAGTAGGGTAACAGGTTGAATTCACAGATCTTAACCCCCTAAGCAATAAGGAAACAGA
1 CCCTAAACAGTAGGGTAACAGGCCAAATTCACAGATCTTAACTCCCTAAGCAGT-AGGGAGCAGA
* *
76552503 TCAAAG-GTGACAAGCCTTAAAC
65 TCGAAGATTGACAAGCCTTAAAC
* * * * * *
76552525 CCCTAAATAGTAGGGTAACAGGCTGAAGATTGAC-GAATCTTAACCCCCTAAACAGTAGGGA-AA
1 CCCTAAACAGTAGGGTAACAGGC-CAA-ATTCACAG-ATCTTAACTCCCTAAGCAGTAGGGAGCA
* * * * ***
76552588 CATAGCAAAAGTGATGGGCCTTAAAC
63 GATCG-AAGATTGACAAGCCTTAAAC
** * * * * *
76552614 CCCTATGCAGTAGGGTAACAAGCTGAAAATT-ACA-A-ATTATCTTCCTAAGCAGTAGTGGAGCA
1 CCCTAAACAGTAGGGTAACAGGC--CAAATTCACAGATCTTAACTCCCTAAGCAGTAG-GGAGCA
* * *
76552676 GATCGAAGA-CGA-AGGGTCTTAAAC
63 GATCGAAGATTGACA-AGCCTTAAAC
* * *
76552700 CCCTAAGCAGTAGGGTAACAGACCAAATT-ACAGATCTTATA-TCCCTAAACAGTAGTGGAGCAG
1 CCCTAAACAGTAGGGTAACAGGCCAAATTCACAGATCTTA-ACTCCCTAAGCAGTAG-GGAGCAG
*
76552763 ATCGAAGATTGACAAACC-TAAACC
64 ATCGAAGATTGACAAGCCTTAAA-C
*** * * *
76552787 CCCTAAACAGTAGGGTAACAGGTTGAATTCACAGATCTTAACCCCCTAAGCAATAGGGAAACAGA
1 CCCTAAACAGTAGGGTAACAGGCCAAATTCACAGATCTTAACTCCCTAAGCAGTAGGG-AGCAGA
76552852 TC-AA-ATGTGACAAGCCTTAAAC
65 TCGAAGAT-TGACAAGCCTTAAAC
* * *
76552874 CCCTAAATAGTAGGGTAACAGGCTGAAGATTGAC-GAATCTTAACTCCCTAAGCAGTAGGGA
1 CCCTAAACAGTAGGGTAACAGGC-CAA-ATTCACAG-ATCTTAACTCCCTAAGCAGTAGGGA
76552935 AACATAGCAG
Statistics
Matches: 391, Mismatches: 80, Indels: 51
0.75 0.15 0.10
Matches are distributed among these distances:
84 8 0.02
85 1 0.00
86 83 0.21
87 129 0.33
88 82 0.21
89 86 0.22
90 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (87 bp):
CCCTAAACAGTAGGGTAACAGGCCAAATTCACAGATCTTAACTCCCTAAGCAGTAGGGAGCAGAT
CGAAGATTGACAAGCCTTAAAC
Found at i:76552574 original size:45 final size:43
Alignment explanation
Indices: 76552428--76552938 Score: 185
Period size: 44 Copynumber: 11.7 Consensus size: 43
76552418 AAGATTGAGA
* * *
76552428 AATCTTAACCCCCTAAACAGTAGGGTAACAGGTTG-AATTCAC
1 AATCTTAACCCCCTAAACAGTAGGGAAACAGGATGAAATTGAC
* * * * *
76552470 AGATCTTAACCCCCTAAGCAATAAGGAAACA-GATCAAAGGTGAC
1 A-ATCTTAACCCCCTAAACAGTAGGGAAACAGGATGAAA-TTGAC
* * * * *
76552514 AAGCCTTAAACCCCTAAATAGTAGGGTAACAGGCTGAAGATTGAC
1 AA-TCTTAACCCCCTAAACAGTAGGGAAACAGGATGAA-ATTGAC
* * *
76552559 GAATCTTAACCCCCTAAACAGTAGGGAAACA-TA-GCAAAAGTGATG
1 -AATCTTAACCCCCTAAACAGTAGGGAAACAGGATG--AAATTGA-C
*** * ** * * *
76552604 GGCCTTAAACCCCTATGCAGTAGGGTAACAAGCTGAAAATT-AC
1 AATCTTAACCCCCTAAACAGTAGGGAAACAGGATG-AAATTGAC
* * ** * *
76552647 AA-ATTATCTTCCTAAGCAGTAGTGG-AGCA-GATCG-AA--GAC
1 AATCTTAACCCCCTAAACAGTAG-GGAAACAGGAT-GAAATTGAC
* * * **
76552686 GAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACA-GACCAAATT-AC
1 -AA---TCTTAACCCCCTAAACAGTAGGGAAACAGGATGAAATTGAC
* *
76552731 AGATCTTATA-TCCCTAAACAGTAGTGG-AGCA-GATCGAAGATTGAC
1 A-ATCTTA-ACCCCCTAAACAGTAG-GGAAACAGGAT-GAA-ATTGAC
* * * * *
76552776 AAACCTAAACCCCCTAAACAGTAGGGTAACAGGTTG-AATTCAC
1 -AATCTTAACCCCCTAAACAGTAGGGAAACAGGATGAAATTGAC
* * *
76552819 AGATCTTAACCCCCTAAGCAATAGGGAAACA-GATCAAATGTGAC
1 A-ATCTTAACCCCCTAAACAGTAGGGAAACAGGATGAAAT-TGAC
* * * * *
76552863 AAGCCTTAAACCCCTAAATAGTAGGGTAACAGGCTGAAGATTGAC
1 AA-TCTTAACCCCCTAAACAGTAGGGAAACAGGATGAA-ATTGAC
* *
76552908 GAATCTTAACTCCCTAAGCAGTAGGGAAACA
1 -AATCTTAACCCCCTAAACAGTAGGGAAACA
76552939 TAGCAGAAGT
Statistics
Matches: 340, Mismatches: 88, Indels: 79
0.67 0.17 0.16
Matches are distributed among these distances:
39 2 0.01
40 4 0.01
41 2 0.01
42 46 0.14
43 71 0.21
44 109 0.32
45 95 0.28
46 11 0.03
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (43 bp):
AATCTTAACCCCCTAAACAGTAGGGAAACAGGATGAAATTGAC
Found at i:76552609 original size:89 final size:87
Alignment explanation
Indices: 76552351--76553002 Score: 490
Period size: 89 Copynumber: 7.4 Consensus size: 87
76552341 AGCCTTATCT
* * * * * * *
76552351 CCCTAAGCAGTAGGGTAACAGAC-CAAATTACAGATCTTATCTCCCTAAGCAGT-GGTGGAGCAG
1 CCCTAAACAGTAGGGTAACAGGCTGAAATTACAGATCTTAACCCCCTAAGCAGTAGG-GAAACAG
* * * ** *
76552414 ATCGAAGATTGAGAAATCTTAACC
65 ATC-AAAAGTGACAAGCCTTAAAC
* * *
76552438 CCCTAAACAGTAGGGTAACAGGTTG-AATTCACAGATCTTAACCCCCTAAGCAATAAGGAAACAG
1 CCCTAAACAGTAGGGTAACAGGCTGAAATT-ACAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
*
76552502 ATCAAAGGTGACAAGCCTTAAAC
65 ATCAAAAGTGACAAGCCTTAAAC
* *
76552525 CCCTAAATAGTAGGGTAACAGGCTGAAGATTGAC-GAATCTTAACCCCCTAAACAGTAGGGAAAC
1 CCCTAAACAGTAGGGTAACAGGCTGAA-ATT-ACAG-ATCTTAACCCCCTAAGCAGTAGGGAAAC
* * ***
76552589 ATAGCAAAAGTGATGGGCCTTAAAC
63 AGATCAAAAGTGACAAGCCTTAAAC
** * * * ** *
76552614 CCCTATGCAGTAGGGTAACAAGCTGAAAATTACA-A-ATTATCTTCCTAAGCAGTAGTGG-AGCA
1 CCCTAAACAGTAGGGTAACAGGCTG-AAATTACAGATCTTAACCCCCTAAGCAGTAG-GGAAACA
* *
76552676 GATC-GAA--GACGAAGGGTCTTAAAC
64 GATCAAAAGTGAC-AA--GCCTTAAAC
* * * * * *
76552700 CCCTAAGCAGTAGGGTAACAGAC-CAAATTACAGATCTTATA-TCCCTAAACAGTAGTGG-AGCA
1 CCCTAAACAGTAGGGTAACAGGCTGAAATTACAGATCTTA-ACCCCCTAAGCAGTAG-GGAAACA
* * *
76552762 GATCGAAGATTGACAAACC-TAAACC
64 GATC-AAAAGTGACAAGCCTTAAA-C
* *
76552787 CCCTAAACAGTAGGGTAACAGGTTG-AATTCACAGATCTTAACCCCCTAAGCAATAGGGAAACAG
1 CCCTAAACAGTAGGGTAACAGGCTGAAATT-ACAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
*
76552851 ATCAAATGTGACAAGCCTTAAAC
65 ATCAAAAGTGACAAGCCTTAAAC
* *
76552874 CCCTAAATAGTAGGGTAACAGGCTGAAGATTGAC-GAATCTTAACTCCCTAAGCAGTAGGGAAAC
1 CCCTAAACAGTAGGGTAACAGGCTGAA-ATT-ACAG-ATCTTAACCCCCTAAGCAGTAGGGAAAC
* * * ***
76552938 ATAGCAGAAGTGATGGGCCTTAAAC
63 AGATCAAAAGTGACAAGCCTTAAAC
** * *
76552963 CCCTATGCAGTAGGGTAACAGGCTAAAAATTACAAATCTT
1 CCCTAAACAGTAGGGTAACAGGCT-GAAATTACAGATCTT
76553003 TTCTCCCTGA
Statistics
Matches: 448, Mismatches: 87, Indels: 59
0.75 0.15 0.10
Matches are distributed among these distances:
83 2 0.00
84 8 0.02
85 3 0.01
86 78 0.17
87 126 0.28
88 75 0.17
89 149 0.33
90 7 0.02
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (87 bp):
CCCTAAACAGTAGGGTAACAGGCTGAAATTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
TCAAAAGTGACAAGCCTTAAAC
Found at i:76552710 original size:86 final size:86
Alignment explanation
Indices: 76552607--76552770 Score: 226
Period size: 86 Copynumber: 1.9 Consensus size: 86
76552597 AGTGATGGGC
* * * *
76552607 CTTAAACCCCTATGCAGTAGGGTAACA-AGCTGAAAATTACA-A-ATTATCTTCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGA-C--AAAATTACAGATATTATATCCCTAAACAGTAG
76552669 TGGAGCAGATCGAAGACGAAGGGT
63 TGGAGCAGATCGAAGACGAAGGGT
* *
76552693 CTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTATATCCCTAAACAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACAAAATTACAGATATTATATCCCTAAACAGTAGTGG
76552758 AGCAGATCGAAGA
66 AGCAGATCGAAGA
76552771 TTGACAAACC
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
84 8 0.12
85 1 0.01
86 59 0.86
87 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.21
Consensus pattern (86 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGACAAAATTACAGATATTATATCCCTAAACAGTAGTGG
AGCAGATCGAAGACGAAGGGT
Found at i:76552994 original size:349 final size:349
Alignment explanation
Indices: 76552351--76552999 Score: 1181
Period size: 349 Copynumber: 1.9 Consensus size: 349
76552341 AGCCTTATCT
* * *
76552351 CCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTGGTGGAGCAGAT
1 CCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTATATCCCTAAACAGTAGTGGAGCAGAT
* * *
76552416 CGAAGATTGAGAAATCTTAACCCCCTAAACAGTAGGGTAACAGGTTGAATTCACAGATCTTAACC
66 CGAAGATTGACAAACCTAAACCCCCTAAACAGTAGGGTAACAGGTTGAATTCACAGATCTTAACC
76552481 CCCTAAGCAATAAGGAAACAGATCAAAGGTGACAAGCCTTAAACCCCTAAATAGTAGGGTAACAG
131 CCCTAAGCAATAAGGAAACAGATCAAAGGTGACAAGCCTTAAACCCCTAAATAGTAGGGTAACAG
76552546 GCTGAAGATTGACGAATCTTAACCCCCTAAACAGTAGGGAAACATAGCAAAAGTGATGGGCCTTA
196 GCTGAAGATTGACGAATCTTAACCCCCTAAACAGTAGGGAAACATAGCAAAAGTGATGGGCCTTA
*
76552611 AACCCCTATGCAGTAGGGTAACAAGCTGAAAATTACAAATTATCTTCCTAAGCAGTAGTGGAGCA
261 AACCCCTATGCAGTAGGGTAACAAGCTAAAAATTACAAATTATCTTCCTAAGCAGTAGTGGAGCA
76552676 GATCGAAGACGAAGGGTCTTAAAC
326 GATCGAAGACGAAGGGTCTTAAAC
76552700 CCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTATATCCCTAAACAGTAGTGGAGCAGAT
1 CCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTATATCCCTAAACAGTAGTGGAGCAGAT
76552765 CGAAGATTGACAAACCTAAACCCCCTAAACAGTAGGGTAACAGGTTGAATTCACAGATCTTAACC
66 CGAAGATTGACAAACCTAAACCCCCTAAACAGTAGGGTAACAGGTTGAATTCACAGATCTTAACC
* *
76552830 CCCTAAGCAATAGGGAAACAGATCAAATGTGACAAGCCTTAAACCCCTAAATAGTAGGGTAACAG
131 CCCTAAGCAATAAGGAAACAGATCAAAGGTGACAAGCCTTAAACCCCTAAATAGTAGGGTAACAG
* * *
76552895 GCTGAAGATTGACGAATCTTAACTCCCTAAGCAGTAGGGAAACATAGCAGAAGTGATGGGCCTTA
196 GCTGAAGATTGACGAATCTTAACCCCCTAAACAGTAGGGAAACATAGCAAAAGTGATGGGCCTTA
*
76552960 AACCCCTATGCAGTAGGGTAACAGGCTAAAAATTACAAAT
261 AACCCCTATGCAGTAGGGTAACAAGCTAAAAATTACAAAT
76553000 CTTTTCTCCC
Statistics
Matches: 287, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
349 287 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (349 bp):
CCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTATATCCCTAAACAGTAGTGGAGCAGAT
CGAAGATTGACAAACCTAAACCCCCTAAACAGTAGGGTAACAGGTTGAATTCACAGATCTTAACC
CCCTAAGCAATAAGGAAACAGATCAAAGGTGACAAGCCTTAAACCCCTAAATAGTAGGGTAACAG
GCTGAAGATTGACGAATCTTAACCCCCTAAACAGTAGGGAAACATAGCAAAAGTGATGGGCCTTA
AACCCCTATGCAGTAGGGTAACAAGCTAAAAATTACAAATTATCTTCCTAAGCAGTAGTGGAGCA
GATCGAAGACGAAGGGTCTTAAAC
Found at i:76553188 original size:49 final size:49
Alignment explanation
Indices: 76553130--76553265 Score: 227
Period size: 49 Copynumber: 2.8 Consensus size: 49
76553120 AAAATAGCGA
76553130 ATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAG
1 ATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAG
*
76553179 ATTTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAG
1 ATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAG
* * * *
76553228 ATCCTATCTCTCTGAAGTTGCAGTGGAACAGACTGAAG
1 ATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAG
76553266 ATAGCAAATA
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 81 1.00
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (49 bp):
ATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAG
Found at i:76554879 original size:3 final size:3
Alignment explanation
Indices: 76554871--76554900 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
76554861 TGCATTTCTA
76554871 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
76554901 ATAGTAGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:76557590 original size:20 final size:20
Alignment explanation
Indices: 76557561--76557608 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
76557551 CATAATTTAA
76557561 AGATAA-ATCTAAAAATTAT
1 AGATAATATCTAAAAATTAT
76557580 AGATAATATCTAAAAATTAT
1 AGATAATATCTAAAAATTAT
76557600 AGATAATAT
1 AGATAATAT
76557609 TTTTTATATC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 6 0.21
20 22 0.79
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.33
Consensus pattern (20 bp):
AGATAATATCTAAAAATTAT
Found at i:76558948 original size:16 final size:16
Alignment explanation
Indices: 76558926--76558994 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
76558916 TTTGGTTCGC
76558926 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
76558942 CGTATTGAATTAGAGG
1 TGTATTGGATTAGAGG
76558958 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
76558975 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
76558991 TGTA
1 TGTA
76558995 ATAGCTAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
16 33 0.69
17 15 0.31
ACGTcount: A:0.26, C:0.01, G:0.36, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:76558972 original size:33 final size:32
Alignment explanation
Indices: 76558926--76558994 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
76558916 TTTGGTTCGC
76558926 TGTATTGGATTAGAGGCGTATTGAATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGAATTAGAGG
* *
76558958 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGAATTAGAGG
76558991 TGTA
1 TGTA
76558995 ATAGCTAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.26, C:0.01, G:0.36, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGAATTAGAGG
Found at i:76559059 original size:44 final size:45
Alignment explanation
Indices: 76558975--76559065 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
76558965 GGATTAGAGG
* * *
76558975 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
76559020 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
76559064 TG
1 TG
76559066 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:76559251 original size:18 final size:17
Alignment explanation
Indices: 76559230--76559264 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
76559220 TTATTATTAA
*
76559230 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
76559248 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
76559265 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:76559371 original size:18 final size:17
Alignment explanation
Indices: 76559350--76559384 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
76559340 TTATTATTAA
*
76559350 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
76559368 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
76559385 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:76559426 original size:120 final size:120
Alignment explanation
Indices: 76559213--76559857 Score: 1172
Period size: 120 Copynumber: 5.4 Consensus size: 120
76559203 ATCATATTTA
76559213 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
76559278 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
76559333 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
76559398 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
*
76559453 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
76559518 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
76559573 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
76559638 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
76559693 AACATAATTATTATTAAATATA-TTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* * *
76559757 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTAT-AAATGA-AAATTT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAAT-ATAAA-TT
* * *
76559812 GAA-ATAATTAATATTAAATATATTTTAATTATAATATATGATTTAA
1 -AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAA
76559858 AATAATTTAA
Statistics
Matches: 513, Mismatches: 8, Indels: 8
0.97 0.02 0.02
Matches are distributed among these distances:
118 7 0.01
119 103 0.20
120 403 0.79
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:76559611 original size:18 final size:17
Alignment explanation
Indices: 76559590--76559624 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
76559580 TTATTATTAA
*
76559590 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
76559608 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
76559625 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:76559730 original size:17 final size:17
Alignment explanation
Indices: 76559710--76559743 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
76559700 TTATTATTAA
76559710 ATAT-ATTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
76559727 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
76559744 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:76560007 original size:92 final size:91
Alignment explanation
Indices: 76559880--76560087 Score: 260
Period size: 92 Copynumber: 2.3 Consensus size: 91
76559870 TAATTATAAC
* * * * *
76559880 TAATAAATTATATT-TATGAATTTGTATAATCTAAAATAA-TAATTATTACATATAATTTAATAA
1 TAATAAATTTTCTTATATGAATTTATACAATCTAAAATAATTAA-TATTAAATATAATTTAAT-A
* **
76559943 TTAATAT-TAAATTTCATAAAATACTTGA
64 GTAATATAT-AATTTCATAAAATACTCAA
*
76559971 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
1 TAATAAATTTTCTTATATGAATTTATACAATCTAAAATAATTAATATTAAATATAATTTAATAGT
* *
76560036 GATATATAATTTCATAAAATTCTCAA
66 AATATATAATTTCATAAAATACTCAA
76560062 TAATAAATTGTTCTTATATGAATTTA
1 TAATAAATT-TTCTTATATGAATTTA
76560088 CTAAAATCAA
Statistics
Matches: 102, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
91 43 0.42
92 56 0.55
93 3 0.03
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.45
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATACAATCTAAAATAATTAATATTAAATATAATTTAATAGT
AATATATAATTTCATAAAATACTCAA
Found at i:76563229 original size:22 final size:22
Alignment explanation
Indices: 76563201--76563247 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
76563191 TTATCGAATG
* *
76563201 ACACCGACTAATACTGTACAAA
1 ACACCGACGAAAACTGTACAAA
76563223 ACACCGACGAAAACTGTACAAA
1 ACACCGACGAAAACTGTACAAA
76563245 ACA
1 ACA
76563248 AATCCTATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.49, C:0.28, G:0.11, T:0.13
Consensus pattern (22 bp):
ACACCGACGAAAACTGTACAAA
Found at i:76563467 original size:54 final size:54
Alignment explanation
Indices: 76563385--76563502 Score: 218
Period size: 54 Copynumber: 2.2 Consensus size: 54
76563375 AGTTCTGGGC
*
76563385 CATTGAGACCAGCTTTAGGCAACAAAATTTCTATCACAGATTCACAGTCCAGCT
1 CATTGAGACCAGCTTTAGGCAACAAAATTTCCATCACAGATTCACAGTCCAGCT
*
76563439 CATTGAGACCAGCTTTAGGCAACAAAATTTCCATCACAGATTCACTGTCCAGCT
1 CATTGAGACCAGCTTTAGGCAACAAAATTTCCATCACAGATTCACAGTCCAGCT
76563493 CATTGAGACC
1 CATTGAGACC
76563503 TTGATATTTA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.25
Consensus pattern (54 bp):
CATTGAGACCAGCTTTAGGCAACAAAATTTCCATCACAGATTCACAGTCCAGCT
Found at i:76564079 original size:14 final size:15
Alignment explanation
Indices: 76564056--76564088 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
76564046 CTTTTCTTTA
76564056 ATTTTCTAGAA-AAT
1 ATTTTCTAGAATAAT
*
76564070 ATTTTTTAGAATAAT
1 ATTTTCTAGAATAAT
76564085 ATTT
1 ATTT
76564089 ATGATTTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (15 bp):
ATTTTCTAGAATAAT
Found at i:76564284 original size:18 final size:19
Alignment explanation
Indices: 76564263--76564301 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
76564253 ATTGTGGGAT
*
76564263 AAATTTTTAAAAAAAT-TA
1 AAATGTTTAAAAAAATATA
*
76564281 AAATGTTTATAAAAATATA
1 AAATGTTTAAAAAAATATA
76564300 AA
1 AA
76564302 TTAATGTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (19 bp):
AAATGTTTAAAAAAATATA
Found at i:76565157 original size:13 final size:13
Alignment explanation
Indices: 76565141--76565165 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76565131 AAAAAAAAGG
76565141 TTTTACTAAAATA
1 TTTTACTAAAATA
76565154 TTTTACTAAAAT
1 TTTTACTAAAAT
76565166 TATGATTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (13 bp):
TTTTACTAAAATA
Found at i:76567105 original size:38 final size:38
Alignment explanation
Indices: 76567054--76567259 Score: 160
Period size: 38 Copynumber: 4.9 Consensus size: 38
76567044 TGAAAAAAAT
*
76567054 GTGGTGCTAAGTGGATATACCACGGTTATACGTGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
*
76567092 GTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAAC
1 GTGGTGCTAAGTGGATATACCACG---------GTT-ATACATGTAAC
* *
76567140 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------TAAC
* * *
76567187 GTGGTGCTAAGTGGATATACCACGATTAAACATGTAAT
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
* *
76567225 GTGGTGCTAAGTGGATATGCCACAGTTATACATGT
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGT
76567260 TAATTTGAAA
Statistics
Matches: 135, Mismatches: 15, Indels: 36
0.73 0.08 0.19
Matches are distributed among these distances:
38 58 0.43
39 2 0.01
40 4 0.03
41 2 0.01
44 2 0.01
45 3 0.02
47 31 0.23
48 33 0.24
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
Found at i:76567210 original size:47 final size:48
Alignment explanation
Indices: 76567081--76567219 Score: 217
Period size: 48 Copynumber: 2.9 Consensus size: 48
76567071 TACCACGGTT
*
76567081 ATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * *
76567129 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* *
76567177 ATTCAT-TAACGTGGTGCTAAGTGGATATACCACGATTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACAT
76567220 GTAATGTGGT
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 33 0.40
48 49 0.60
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
Found at i:76574622 original size:13 final size:13
Alignment explanation
Indices: 76574604--76574644 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
76574594 TGCCACATTT
76574604 ATATCATCAAAAC
1 ATATCATCAAAAC
76574617 ATATCATCAAAAC
1 ATATCATCAAAAC
*
76574630 ATATCATCAATAC
1 ATATCATCAAAAC
76574643 AT
1 AT
76574645 CATTCAAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (13 bp):
ATATCATCAAAAC
Found at i:76576518 original size:29 final size:29
Alignment explanation
Indices: 76576464--76576519 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
76576454 CTATTACAAT
* *
76576464 TATTATCATTATAACTATTATTATATAAC
1 TATTATCATTATAACTATAATCATATAAC
*
76576493 TATTATCATTATTA-TATAATACATATA
1 TATTATCATTATAACTATAAT-CATATA
76576520 TATATTTAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 5 0.22
29 18 0.78
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (29 bp):
TATTATCATTATAACTATAATCATATAAC
Found at i:76581647 original size:19 final size:19
Alignment explanation
Indices: 76581612--76581648 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
76581602 TTCTATATTA
* *
76581612 TTATTATTATTATTGTTAC
1 TTATTATTATCACTGTTAC
76581631 TTATTATTATCACTGTTA
1 TTATTATTATCACTGTTA
76581649 TGTACATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.08, G:0.05, T:0.59
Consensus pattern (19 bp):
TTATTATTATCACTGTTAC
Found at i:76581712 original size:3 final size:3
Alignment explanation
Indices: 76581407--76581695 Score: 133
Period size: 3 Copynumber: 95.7 Consensus size: 3
76581397 TGAATTTCTA
* * *
76581407 TAT TAT TAT TAT TAT TAT TAT TAT TGT TACT TAT TAT TAT TAC TGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
* * *
76581453 TAT GTACA TAT TAT T-T ATAC TA- TACT TAA TAT TAT TAT TAT TAT TAT
1 TAT -TA-T TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* *
76581500 TAT TAT CAT TAT TAT TAT TAT TAT TA- TATT TAC TAT TAT T-T T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
* * * *
76581543 TAT AAA TAT TAGT GTA- TAT T-T TAT T-T TAA TAT CAT TA- TAT TAT
1 TAT TAT TAT TA-T -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
76581586 GT-T TACT T-T T-T TGAAT T-T CTA- TAT TAT TAT TAT TAT TAT TGT
1 -TAT TA-T TAT TAT T--AT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
76581628 TACT TAT TAT TAT CAC TGT TAT GTACA TAT TAT T-T ATAC TA- TACT
1 TA-T TAT TAT TAT TAT TAT TAT -TA-T TAT TAT TAT -TAT TAT TA-T
*
76581673 TAA TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TA
76581696 CATTTACTAT
Statistics
Matches: 218, Mismatches: 36, Indels: 64
0.69 0.11 0.20
Matches are distributed among these distances:
2 28 0.13
3 162 0.74
4 24 0.11
5 4 0.02
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:76581883 original size:3 final size:3
Alignment explanation
Indices: 76581875--76581910 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
76581865 GTATTTTTAC
*
76581875 TAT TAT TAT TAT TAT TAT TAT TAT ATAA TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TA
76581911 ATAGGTACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 28 0.93
4 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:76582312 original size:23 final size:23
Alignment explanation
Indices: 76582270--76582327 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
76582260 TTTTACTATC
* *
76582270 TTATGTATATACTTCAAACACTA
1 TTATATATATATTTCAAACACTA
*
76582293 -TATATAGTATATTTCTAACACTA
1 TTATATA-TATATTTCAAACACTA
76582316 TTATATATATAT
1 TTATATATATAT
76582328 ATTATGTACA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 5 0.17
23 19 0.63
24 6 0.20
ACGTcount: A:0.40, C:0.12, G:0.03, T:0.45
Consensus pattern (23 bp):
TTATATATATATTTCAAACACTA
Found at i:76604881 original size:3 final size:3
Alignment explanation
Indices: 76604868--76604951 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
76604858 GAATTTCAGA
* *
76604868 TAT TA- TAT TAT TAT TATT TACT TA- TAT TAC TAT TAT ATAT ATCT TAT
1 TAT TAT TAT TAT TAT TA-T TA-T TAT TAT TAT TAT TAT -TAT -TAT TAT
*
76604915 ATAT ATAA TAT TAT TA- TAT TAT TAT TAT T-T TAT TAT T
1 -TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
76604952 TATATTTACT
Statistics
Matches: 67, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
2 8 0.12
3 41 0.61
4 18 0.27
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:76604884 original size:11 final size:11
Alignment explanation
Indices: 76604868--76604957 Score: 69
Period size: 11 Copynumber: 7.8 Consensus size: 11
76604858 GAATTTCAGA
76604868 TATTATATTAT
1 TATTATATTAT
76604879 TATTAT-TTACT
1 TATTATATTA-T
*
76604890 TA-TATTACTAT
1 TATTA-TATTAT
76604901 TATATATATCT-T
1 TAT-TATAT-TAT
*
76604913 ATATATATAATAT
1 -TAT-TATATTAT
76604926 TATTATATTAT
1 TATTATATTAT
*
76604937 TATTATTTTAT
1 TATTATATTAT
76604948 TATTTATATT
1 TA-TTATATT
76604958 TACTATTTTA
Statistics
Matches: 64, Mismatches: 6, Indels: 17
0.74 0.07 0.20
Matches are distributed among these distances:
10 5 0.08
11 32 0.50
12 15 0.23
13 12 0.19
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (11 bp):
TATTATATTAT
Found at i:76604949 original size:47 final size:46
Alignment explanation
Indices: 76604867--76605002 Score: 122
Period size: 47 Copynumber: 3.0 Consensus size: 46
76604857 TGAATTTCAG
* *
76604867 ATATTATATTATTATTAT-TTACTTA-TATTACTATTATATATATCTT
1 ATATTATAATATTATTATATTACTTATTATT-TTATTATATATAT-TT
*
76604913 ATATATATAATATTATTATATTA-TTATTATTTTATTATTTATATTT
1 ATAT-TATAATATTATTATATTACTTATTATTTTATTATATATATTT
* * * *
76604959 ACTATT-TTAT-TTA-TAAATTAGTGATTATTTTATTCATATATATT
1 A-TATTATAATATTATTATATTACTTATTATTTTATT-ATATATATT
76605003 ATTTACTTTT
Statistics
Matches: 77, Mismatches: 7, Indels: 13
0.79 0.07 0.13
Matches are distributed among these distances:
43 6 0.08
44 15 0.19
45 11 0.14
46 8 0.10
47 30 0.39
48 7 0.09
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (46 bp):
ATATTATAATATTATTATATTACTTATTATTTTATTATATATATTT
Found at i:76605039 original size:26 final size:25
Alignment explanation
Indices: 76604929--76605040 Score: 82
Period size: 25 Copynumber: 4.8 Consensus size: 25
76604919 ATAATATTAT
76604929 TATATTA-TTATTATTTTATT-AT-
1 TATATTATTTATTATTTTATTCATA
*
76604951 T-TA-TATTTACTATTTTATT--TA
1 TATATTATTTATTATTTTATTCATA
* * *
76604972 TAAATTAGTGATTATTTTATTCATA
1 TATATTATTTATTATTTTATTCATA
*
76604997 TATATTATTTACTT-TTTGAATTC-TA
1 TATATTATTTA-TTATTT-TATTCATA
76605022 TATTATTA-TTATTATTTTA
1 TA-TATTATTTATTATTTTA
76605041 CCTTATATTA
Statistics
Matches: 70, Mismatches: 10, Indels: 18
0.71 0.10 0.18
Matches are distributed among these distances:
20 3 0.04
21 15 0.21
22 2 0.03
23 13 0.19
24 3 0.04
25 23 0.33
26 11 0.16
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (25 bp):
TATATTATTTATTATTTTATTCATA
Found at i:76605048 original size:47 final size:43
Alignment explanation
Indices: 76604929--76605051 Score: 106
Period size: 50 Copynumber: 2.7 Consensus size: 43
76604919 ATAATATTAT
*
76604929 TATATTATTATTATTTTA-TTATTTATATTTACTATTTTATTTA
1 TATATTATTATTATTTTACTTATAT-TATTTACTATTTTATTTA
* *
76604972 TAAATTAGTGATTATTTTATTCATATATATTATTTACT-TTTTGAATTCTA
1 TATATTA-TTATTATTTTA--C-T-TATATTATTTACTATTTT--ATT-TA
76605022 TATTATTATTATTATTTTACCTTATATTAT
1 TA-TATTATTATTATTTTA-CTTATATTAT
76605052 ACTGTAGTAC
Statistics
Matches: 64, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
43 6 0.09
44 10 0.16
47 12 0.19
48 10 0.16
49 8 0.12
50 14 0.22
51 4 0.06
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (43 bp):
TATATTATTATTATTTTACTTATATTATTTACTATTTTATTTA
Found at i:76605266 original size:3 final size:3
Alignment explanation
Indices: 76605258--76605301 Score: 52
Period size: 3 Copynumber: 14.0 Consensus size: 3
76605248 GTATTTTTAC
* *
76605258 TAT TAT TAT GAT TAT TAT TAT TAT TATT TAT ATAA TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT -TAT TAT TAT TAT
76605302 AGGTACTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
3 30 0.86
4 5 0.14
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:76605373 original size:9 final size:9
Alignment explanation
Indices: 76605359--76605464 Score: 74
Period size: 9 Copynumber: 11.7 Consensus size: 9
76605349 TATTATTATA
76605359 TTATTTTTT
1 TTATTTTTT
76605368 TTATTTTTT
1 TTATTTTTT
76605377 TTATATTTTT
1 TTAT-TTTTT
* * *
76605387 AAATATTATAT
1 --TTATTTTTT
*
76605398 TTATATTATT
1 TTAT-TTTTT
*
76605408 TTA--TTAT
1 TTATTTTTT
**
76605415 TTATTTTAC
1 TTATTTTTT
76605424 TTATTTTTT
1 TTATTTTTT
*
76605433 TTTTTTTTT
1 TTATTTTTT
*
76605442 TTTTTTTTT
1 TTATTTTTT
76605451 TTA-TTTTT
1 TTATTTTTT
76605459 TTATTT
1 TTATTT
76605465 GTCTACTATT
Statistics
Matches: 76, Mismatches: 14, Indels: 14
0.73 0.13 0.13
Matches are distributed among these distances:
7 5 0.07
8 8 0.11
9 47 0.62
10 10 0.13
11 3 0.04
12 3 0.04
ACGTcount: A:0.19, C:0.01, G:0.00, T:0.80
Consensus pattern (9 bp):
TTATTTTTT
Found at i:76605374 original size:5 final size:5
Alignment explanation
Indices: 76605348--76605483 Score: 56
Period size: 5 Copynumber: 27.8 Consensus size: 5
76605338 ATGTACTATA
* ** *
76605348 TTATT ATTATA TTATT TT-TT TTATT TT-TT TTATAT TT-TT AAATA TTATAT
1 TTATT -TTATT TTATT TTATT TTATT TTATT TTAT-T TTATT TTATT TTAT-T
* * *
76605398 TTATA TTATT TTATTAT TTATT TTA-C TTATT TT-TT TT-TT TT-TT TTTTT
1 TTATT TTATT TTA-T-T TTATT TTATT TTATT TTATT TTATT TTATT TTATT
* * * *
76605446 TTTTT TTA-T TT-TT TTATT TGTCTA CTATT TTATT TTAT
1 TTATT TTATT TTATT TTATT T-TATT TTATT TTATT TTAT
76605484 ATATTTATTA
Statistics
Matches: 99, Mismatches: 19, Indels: 25
0.69 0.13 0.17
Matches are distributed among these distances:
4 30 0.30
5 50 0.51
6 15 0.15
7 4 0.04
ACGTcount: A:0.21, C:0.02, G:0.01, T:0.76
Consensus pattern (5 bp):
TTATT
Found at i:76605393 original size:21 final size:21
Alignment explanation
Indices: 76605369--76605431 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 21
76605359 TTATTTTTTT
76605369 TATTTTTTTTATATTTTTAAA
1 TATTTTTTTTATATTTTTAAA
* * * *
76605390 TATTATATTTATATTATTTTAT
1 TATTTTTTTTATATT-TTTAAA
*
76605412 TATTTATTTTACTTATTTTT
1 TATTTTTTTTA--TATTTTT
76605432 TTTTTTTTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
21 13 0.41
22 12 0.38
23 3 0.09
24 4 0.12
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (21 bp):
TATTTTTTTTATATTTTTAAA
Found at i:76605394 original size:44 final size:44
Alignment explanation
Indices: 76605345--76605431 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 44
76605335 GCTATGTACT
* *
76605345 ATATTAT-TATTATATTATTTTTTTTATTTTTTTTA-TATTTTTAA
1 ATATTATAT-TTATATTA-TTTTATTATTTATTTTACTATTTTTAA
76605389 ATATTATATTTATATTATTTTATTATTTATTTTACTTATTTTT
1 ATATTATATTTATATTATTTTATTATTTATTTTAC-TATTTTT
76605432 TTTTTTTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
43 15 0.39
44 15 0.39
45 8 0.21
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.71
Consensus pattern (44 bp):
ATATTATATTTATATTATTTTATTATTTATTTTACTATTTTTAA
Found at i:76605428 original size:13 final size:12
Alignment explanation
Indices: 76605346--76605508 Score: 68
Period size: 12 Copynumber: 13.1 Consensus size: 12
76605336 CTATGTACTA
*
76605346 TATTA-TTATTA
1 TATTATTTATTT
*
76605357 TATTATTTTTTT
1 TATTATTTATTT
76605369 TATT-TTT-TTT
1 TATTATTTATTT
76605379 ATATT-TTTAAATATT
1 -TATTATTT--AT-TT
76605394 ATATTTATATTATTT
1 -TA-TTAT-TTATTT
76605409 TATTATTTATTT
1 TATTATTTATTT
76605421 TACTTATTT-TTT
1 TA-TTATTTATTT
* * *
76605433 TTTTTTTTTTTT
1 TATTATTTATTT
* *
76605445 TTTTTTTTATTT
1 TATTATTTATTT
* * *
76605457 TTTTATTT-GTC
1 TATTATTTATTT
*
76605468 TACTATTTTATTT
1 TATTA-TTTATTT
76605481 TATATATTTATTAT
1 TAT-TATTTATT-T
*
76605495 TATATATATATTT
1 TAT-TATTTATTT
76605508 T
1 T
76605509 GTTTTTATAT
Statistics
Matches: 123, Mismatches: 14, Indels: 28
0.75 0.08 0.17
Matches are distributed among these distances:
10 3 0.02
11 24 0.20
12 44 0.36
13 21 0.17
14 17 0.14
15 7 0.06
16 4 0.03
17 1 0.01
18 2 0.02
ACGTcount: A:0.23, C:0.02, G:0.01, T:0.74
Consensus pattern (12 bp):
TATTATTTATTT
Found at i:76605433 original size:1 final size:1
Alignment explanation
Indices: 76605427--76605460 Score: 59
Period size: 1 Copynumber: 34.0 Consensus size: 1
76605417 ATTTTACTTA
*
76605427 TTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
76605461 ATTTGTCTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.03, C:0.00, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:76605437 original size:16 final size:14
Alignment explanation
Indices: 76605424--76605460 Score: 67
Period size: 13 Copynumber: 2.7 Consensus size: 14
76605414 TTTATTTTAC
76605424 TTATTTTTTTTTTT
1 TTATTTTTTTTTTT
76605438 TT-TTTTTTTTTTT
1 TTATTTTTTTTTTT
76605451 TTATTTTTTT
1 TTATTTTTTT
76605461 ATTTGTCTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.05, C:0.00, G:0.00, T:0.95
Consensus pattern (14 bp):
TTATTTTTTTTTTT
Found at i:76605461 original size:8 final size:8
Alignment explanation
Indices: 76605363--76605464 Score: 75
Period size: 8 Copynumber: 12.4 Consensus size: 8
76605353 ATTATATTAT
76605363 TTTTTTTA
1 TTTTTTTA
76605371 TTTTTTTTA
1 -TTTTTTTA
*
76605380 TATTTTTAA
1 T-TTTTTTA
* * *
76605389 ATATTATA
1 TTTTTTTA
*
76605397 TTTATATTA
1 TTT-TTTTA
*
76605406 TTTTATTA
1 TTTTTTTA
76605414 TTTATTTTA
1 TTT-TTTTA
76605423 CTTATTTTT-
1 -TT-TTTTTA
76605432 TTTTTTT-
1 TTTTTTTA
76605439 TTTTTTT-
1 TTTTTTTA
76605446 TTTTTTTA
1 TTTTTTTA
76605454 TTTTTTTA
1 TTTTTTTA
76605462 TTT
1 TTT
76605465 GTCTACTATT
Statistics
Matches: 77, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
7 19 0.25
8 27 0.35
9 24 0.31
10 6 0.08
11 1 0.01
ACGTcount: A:0.19, C:0.01, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTTTTA
Found at i:76605494 original size:16 final size:15
Alignment explanation
Indices: 76605409--76605520 Score: 61
Period size: 16 Copynumber: 7.3 Consensus size: 15
76605399 TATATTATTT
76605409 TATTATTTATTTTACT-
1 TATT-TTTATTTTA-TA
* *
76605425 TATTTTT-TTTTTTT
1 TATTTTTATTTTATA
* * *
76605439 TTTTTTTTTTTTTTA
1 TATTTTTATTTTATA
* *
76605454 TTTTTTTATTTGTCTA
1 TATTTTTATTT-TATA
76605470 CTA-TTTTATTTTATA
1 -TATTTTTATTTTATA
*
76605485 TATTTATTATTATATA
1 TATTT-TTATTTTATA
*
76605501 TATATTTTGTTTT-TA
1 TAT-TTTTATTTTATA
76605516 TATTT
1 TATTT
76605521 CAACATATGT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
13 1 0.01
14 14 0.18
15 29 0.37
16 32 0.41
17 3 0.04
ACGTcount: A:0.20, C:0.03, G:0.02, T:0.76
Consensus pattern (15 bp):
TATTTTTATTTTATA
Found at i:76605514 original size:72 final size:70
Alignment explanation
Indices: 76605346--76605514 Score: 155
Period size: 72 Copynumber: 2.4 Consensus size: 70
76605336 CTATGTACTA
* *
76605346 TATTATTAT-TATATTATTTTTTTTATTTTTTTTATATTTTTAAATATTATATTTATATTATTTT
1 TATTATTATATATA-TATTTTTTTTTTTTTTTTTATATTTTTAAATATTATATCTATATTATTTT
76605410 ATTATT
65 ATTATT
* * * * ** * * *
76605416 TATT-TTACTTATTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTAT-TTGTCTACTATTTTAT
1 TATTATTA--TA-TATATATTTTTTTTTTTTTTTTTATATTTTTAAATATTATAT-CTATATTAT
76605479 TTTATATATT
62 TTTAT-TATT
*
76605489 TATTATTATATATATATTTTGTTTTT
1 TATTATTATATATATATTTTTTTTTT
76605515 ATATTTCAAC
Statistics
Matches: 77, Mismatches: 15, Indels: 13
0.73 0.14 0.12
Matches are distributed among these distances:
69 3 0.04
70 4 0.05
71 17 0.22
72 40 0.52
73 10 0.13
74 3 0.04
ACGTcount: A:0.22, C:0.02, G:0.01, T:0.75
Consensus pattern (70 bp):
TATTATTATATATATATTTTTTTTTTTTTTTTTATATTTTTAAATATTATATCTATATTATTTTA
TTATT
Found at i:76617428 original size:74 final size:74
Alignment explanation
Indices: 76617305--76618372 Score: 1188
Period size: 74 Copynumber: 13.9 Consensus size: 74
76617295 AAGTATGCTT
* * *
76617305 TTTCAATTTATTTTTGTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACA
1 TTTCAATTTCTGTTT-TC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
76617370 CGCTGAGGTAA
64 CGCTGAGGTAA
*
76617381 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
*
76617446 TTGAGGTAA
66 CTGAGGTAA
** ** *
76617455 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATG
1 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
* *
76617520 TTGAGGTAT
66 CTGAGGTAA
* *
76617529 TTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACA
1 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACA
*
76617594 TGCTGAGGTAA
64 CGCTGAGGTAA
* * *
76617605 TTTCAATTCCTGTTTGTC---AAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCCCGGGTCAC
1 TTTCAATTTCTGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--AC
* *
76617667 ATG-TCGAGGTAT
63 ACGCT-GAGGTAA
* ** * * ** *
76617679 TTTCAAAGTATGCT-TTTTCAATTTATTTTTGTCAAAAAAAAATCCA-ACT-CGTATTGCGAGAG
1 TTTC-AA-T-TTCTGTTTTCAA---A--------AAAATCAACT-CATATTGCG-AGAG-GTGAG
* *
76617741 GTGAGTTGAGTCTCGGGACACGCTGAGGTAA
49 TTGAG-----CCTCGGGACACGCTGAGGTAA
76617772 TTTCAATTTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
1 TTTCAATTTCTGTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
76617837 GCTGAGGTAA
65 GCTGAGGTAA
*
76617847 TTTCAATTTCTGTTTTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
1 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
76617912 CTGAGGTAA
66 CTGAGGTAA
76617921 TTTCAATTTCTGTTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGA
1 TTTCAATTTCTGTTTTC----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGA
76617986 CACGCTGAGGTAA
62 CACGCTGAGGTAA
** **
76617999 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
* *
76618064 TTGAGGTAT
66 CTGAGGTAA
*
76618073 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACA
1 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACA
*
76618138 TGCTGAGGTAA
64 CGCTGAGGTAA
* * *
76618149 TTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCGGGACACG
1 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
76618214 CTGAGGT-A
66 CTGAGGTAA
* **
76618222 TTGTCAATTTTTTGTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
1 TT-TCAA-TTTCTG--T-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
*
76618287 ACATGCTGAGGT-A
61 ACACGCTGAGGTAA
* *
76618300 TTGTCAATTTTTTGTATGCTTC--AAAAATCAACTCATATTGCGAGAGGTG-GATTGAGCCTCAG
1 TT-TCAA-TTTCTGT-T--TTCAAAAAAATCAACTCATATTGCGAGAGGTGAG-TTGAGCCTCGG
76618362 GACACGCTGAG
60 GACACGCTGAG
76618373 TAAGTTGAGC
Statistics
Matches: 864, Mismatches: 78, Indels: 100
0.83 0.07 0.10
Matches are distributed among these distances:
73 4 0.00
74 422 0.49
75 49 0.06
76 159 0.18
77 6 0.01
78 144 0.17
80 10 0.01
81 11 0.01
82 2 0.00
88 2 0.00
89 12 0.01
90 13 0.02
91 6 0.01
92 4 0.00
93 14 0.02
94 1 0.00
95 5 0.01
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (74 bp):
TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
CTGAGGTAA
Found at i:76620373 original size:24 final size:24
Alignment explanation
Indices: 76620346--76620404 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
76620336 ATTATGTACA
*
76620346 TATTATTTATACTATACTTAATAT
1 TATTATTTATACTACACTTAATAT
* * *
76620370 TATTA-TTATTATTACATTTACTAT
1 TATTATTTA-TACTACACTTAATAT
76620394 TATTATTTATA
1 TATTATTTATA
76620405 AATATTAGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 3 0.10
24 23 0.79
25 3 0.10
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.58
Consensus pattern (24 bp):
TATTATTTATACTACACTTAATAT
Found at i:76620400 original size:3 final size:3
Alignment explanation
Indices: 76620101--76620383 Score: 126
Period size: 3 Copynumber: 92.7 Consensus size: 3
76620091 TGAATTTCTA
*
76620101 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TACT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT
* * * * *
76620147 TAC TGT TAT GTACA TAT TAT T-T ATAC TA- TACT TAA TAT TAT TAT TAT
1 TAT TAT TAT -TA-T TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT
* * * *
76620194 TAT CAT TAT TAT TAT TAT TAT TA- TATT TAC TAT TAT TAT ATAT AAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT -TAT TAT
* * *
76620240 TAT TAGT GTA- TAT T-T TAT T-T TAA TAT CAT TA- TAA TAT GT-T TACT
1 TAT TA-T -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA-T
*
76620284 T-T T-T TGAAT T-T CTA- TAT TAT TAT TAT TAT TAT TGT TACT TAT TAT
1 TAT TAT T--AT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT
* * * * *
76620329 TAT CAC TAT TAT GTACA TAT TAT T-T ATAC TA- TACT TAA TAT TAT TAT
1 TAT TAT TAT TAT -TA-T TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT
76620376 TAT TAT TA
1 TAT TAT TA
76620384 CATTTACTAT
Statistics
Matches: 213, Mismatches: 35, Indels: 64
0.68 0.11 0.21
Matches are distributed among these distances:
2 24 0.11
3 158 0.74
4 27 0.13
5 4 0.02
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:76620441 original size:12 final size:13
Alignment explanation
Indices: 76620415--76620443 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
76620405 AATATTAGTG
76620415 TATATTTTTATTA
1 TATATTTTTATTA
76620428 TATATTTTTA-TA
1 TATATTTTTATTA
76620440 TATA
1 TATA
76620444 CTCTTTATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TATATTTTTATTA
Found at i:76620578 original size:3 final size:3
Alignment explanation
Indices: 76620572--76620631 Score: 84
Period size: 3 Copynumber: 19.7 Consensus size: 3
76620562 CTATTATTGC
* *
76620572 TAT TAT TGT TAT TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
76620620 ATAA TAT TAT TA
1 -TAT TAT TAT TA
76620632 ATAGGTACTT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
3 48 0.96
4 2 0.04
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:76631632 original size:80 final size:79
Alignment explanation
Indices: 76631487--76631658 Score: 188
Period size: 80 Copynumber: 2.2 Consensus size: 79
76631477 ATGTCTGGGC
* **
76631487 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAACGAG
76631552 TTA-CTAAATCCGGGT
66 -TAGCTAAATCC-GGT
* * * * *
76631567 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTGAACG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTGAACG
*
76631630 AGTAGCTATATCCGGT
64 AGTAGCTAAATCCGGT
* *
76631646 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
76631659 TATGTGATTT
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
79 17 0.22
80 54 0.69
81 7 0.09
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAACGAG
TAGCTAAATCCGGT
Found at i:76631639 original size:40 final size:40
Alignment explanation
Indices: 76631483--76631625 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
76631473 AATGATGTCT
* * * *
76631483 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACC
*
76631523 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AATCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
*
76631563 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
*
76631603 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
76631626 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
39 2 0.02
40 77 0.87
41 10 0.11
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
Found at i:76631980 original size:47 final size:47
Alignment explanation
Indices: 76631850--76632209 Score: 567
Period size: 47 Copynumber: 7.6 Consensus size: 47
76631840 AAGGGTTGGT
*
76631850 AATGTGAAAGTGTATATATGTGATAAGTCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
76631897 AATGTGAAAGTGTATATATATGTGATAAGGTCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
76631946 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
76631993 AATGTGAAAGTGTATATATATGTGATAAGGTCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
76632042 AATGTGAAAGTGCATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
76632089 AATGTGAAAGTGTATATATGCGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
76632136 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
76632183 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
76632210 TCCCGAAGGG
Statistics
Matches: 290, Mismatches: 19, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 199 0.69
49 91 0.31
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:76632014 original size:96 final size:96
Alignment explanation
Indices: 76631850--76632209 Score: 593
Period size: 96 Copynumber: 3.8 Consensus size: 96
76631840 AAGGGTTGGT
*
76631850 AATGTGAAAGTGTATATATGTGATAAGTCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
76631915 TATGTGATAAGGTCTAATGGCCGATGTGATG
66 TATGTGATAAGGTCTAATGGCCGATGTGATG
76631946 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
76632011 TATGTGATAAGGTCTAATGGCCGATGTGATG
66 TATGTGATAAGGTCTAATGGCCGATGTGATG
*
76632042 AATGTGAAAGTGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
76632105 TATGCGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGTCTAATGGCCGATGTGATG
* * * * * * *
76632136 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
76632200 -ATGTGATAAG
66 TATGTGATAAG
76632210 TCCCGAAGGG
Statistics
Matches: 249, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
94 93 0.37
95 1 0.00
96 155 0.62
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGTCTAATGGCCGATGTGATG
Found at i:76632108 original size:143 final size:141
Alignment explanation
Indices: 76631850--76632209 Score: 560
Period size: 143 Copynumber: 2.5 Consensus size: 141
76631840 AAGGGTTGGT
76631850 AATGTGAAAGTGTATATATGTGATAA-GTCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAAAGTGTATATATGTGATAAGGT-CTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
* *
76631914 ATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
63 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGCGATAAGGCCTAA
76631979 TGGCCGATGTGATG
128 TGGCCGATGTGATG
*
76631993 AATGTGAAAGTGTATATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGCATA
1 AATGTGAAAGTG--TATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
76632058 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGCGATAAGGCCTAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGCGATAAGGCCTAAT
76632123 GGCCGATGTGATG
129 GGCCGATGTGATG
* * * * * * * * *
76632136 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
76632201 TGTGATAAG
66 TGTGATAAG
76632210 TCCCGAAGGG
Statistics
Matches: 201, Mismatches: 13, Indels: 8
0.91 0.06 0.04
Matches are distributed among these distances:
141 52 0.26
143 103 0.51
145 44 0.22
146 2 0.01
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGCGATAAGGCCTAATGG
CCGATGTGATG
Found at i:76638871 original size:63 final size:62
Alignment explanation
Indices: 76638744--76638880 Score: 168
Period size: 63 Copynumber: 2.2 Consensus size: 62
76638734 CGGCCTGGGT
* * *
76638744 ACACGTCCGTGTGCCTGGCCGTGTGGTTTTATTCCACAAACAGTGAGTTACACGGCTAATAC
1 ACACGCCCGTGTGCCTGGCCGTGTGGTTTTATACCACAAACAGTGAGTTACACAGCTAATAC
* * * * * *
76638806 ACACGCTCGTGTGCCTTGCTCGTGTGGTTTTGTACCACAAATAGTGAGTTACACATCT-CTGAC
1 ACACGCCCGTGTGCCTGGC-CGTGTGGTTTTATACCACAAACAGTGAGTTACACAGCTAAT-AC
76638869 ACACGCCCGTGT
1 ACACGCCCGTGT
76638881 CCATTGCCTG
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
62 17 0.27
63 46 0.73
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.28
Consensus pattern (62 bp):
ACACGCCCGTGTGCCTGGCCGTGTGGTTTTATACCACAAACAGTGAGTTACACAGCTAATAC
Found at i:76639008 original size:5 final size:5
Alignment explanation
Indices: 76639000--76639033 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
76638990 AAAATAAAAA
76639000 TTATT TTATT TTATT TTATT TTATT TTATT TTAT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTAT
76639034 GGTTGGCATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:76647905 original size:49 final size:49
Alignment explanation
Indices: 76647842--76648015 Score: 251
Period size: 49 Copynumber: 3.5 Consensus size: 49
76647832 TCTGGTATTA
* *
76647842 TAGTAGCCTACACTTTGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
*** ** *
76647891 TAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCTGGTACACG
76647941 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTAT-TCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCT-GGTACACG
76647990 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
76648016 CATGACCTCA
Statistics
Matches: 109, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
48 1 0.01
49 65 0.60
50 43 0.39
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
Found at i:76647968 original size:99 final size:99
Alignment explanation
Indices: 76647842--76648023 Score: 330
Period size: 99 Copynumber: 1.8 Consensus size: 99
76647832 TCTGGTATTA
*
76647842 TAGTAGCCTACACTTTGTACTACACATGCGACCAATTA-TCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATTC-GGTACACGTAGTAGCCTGCACTT
76647906 AGTACTACACACATGACCTAACCATCTGATACACG
65 AGTACTACACACATGACCTAACCATCTGATACACG
*
76647941 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATTCGGTACACGTAGTAGCCTGCACTTA
76648006 GTACTACACACATGACCT
66 GTACTACACACATGACCT
76648024 CACAATAGAT
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
99 78 0.98
100 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATTCGGTACACGTAGTAGCCTGCACTTA
GTACTACACACATGACCTAACCATCTGATACACG
Found at i:76651340 original size:29 final size:28
Alignment explanation
Indices: 76651286--76651341 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 28
76651276 GATAACAATA
* *
76651286 TAAAAATATAATATTTCTATTAAAAATT
1 TAAAAATATAAAATTACTATTAAAAATT
* *
76651314 TAAAATATATAAAATTACTGTTTAAAAT
1 TAAAA-ATATAAAATTACTATTAAAAAT
76651342 GAATCTTTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 5 0.22
29 18 0.78
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.41
Consensus pattern (28 bp):
TAAAAATATAAAATTACTATTAAAAATT
Found at i:76651514 original size:11 final size:11
Alignment explanation
Indices: 76651498--76651538 Score: 82
Period size: 11 Copynumber: 3.7 Consensus size: 11
76651488 TCTAGACAAG
76651498 ATTTTTTTGTA
1 ATTTTTTTGTA
76651509 ATTTTTTTGTA
1 ATTTTTTTGTA
76651520 ATTTTTTTGTA
1 ATTTTTTTGTA
76651531 ATTTTTTT
1 ATTTTTTT
76651539 TATTTGTTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.76
Consensus pattern (11 bp):
ATTTTTTTGTA
Found at i:76652000 original size:16 final size:17
Alignment explanation
Indices: 76651981--76652012 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
76651971 TAAAAATACA
76651981 TTTTTTTAT-ATTTTAT
1 TTTTTTTATAATTTTAT
76651997 TTTTTTTATAATTTTA
1 TTTTTTTATAATTTTA
76652013 AAAATAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTTTTATAATTTTAT
Found at i:76654744 original size:28 final size:28
Alignment explanation
Indices: 76654712--76654776 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
76654702 ATTTACTAGA
*
76654712 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
76654740 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
76654768 ATACCCCTA
1 ATACCCCTA
76654777 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:76654931 original size:27 final size:28
Alignment explanation
Indices: 76654882--76654970 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 28
76654872 AGGAAGCGTC
* *
76654882 CTGGTGGC-TTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
* **
76654909 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
76654936 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
76654965 CTGGTG
1 CTGGTG
76654971 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
27 31 0.60
28 14 0.27
29 7 0.13
ACGTcount: A:0.18, C:0.25, G:0.25, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:76654981 original size:29 final size:28
Alignment explanation
Indices: 76654891--76654981 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
76654881 CCTGGTGGCT
* * *
76654891 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
76654919 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
76654946 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
76654975 TGTCACA
1 TGCCACA
76654982 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:76654989 original size:55 final size:55
Alignment explanation
Indices: 76654882--76654995 Score: 133
Period size: 55 Copynumber: 2.1 Consensus size: 55
76654872 AGGAAGCGTC
* * * *
76654882 CTGGTGGCTTGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCCTGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
76654936 CTGGTGGCACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGC-CTGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
76654992 CTGG
1 CTGG
76654996 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
54 8 0.16
55 22 0.44
56 20 0.40
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (55 bp):
CTGGTGGCCTGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:76655448 original size:19 final size:19
Alignment explanation
Indices: 76655424--76655462 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
76655414 TTTTAATTAT
* *
76655424 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
76655443 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
76655462 T
1 T
76655463 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:76657207 original size:18 final size:18
Alignment explanation
Indices: 76657186--76657230 Score: 76
Period size: 17 Copynumber: 2.6 Consensus size: 18
76657176 AAAATTCAGG
76657186 TTTCAAAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
76657204 TTTC-AAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
76657221 TTT-AAAAATT
1 TTTCAAAAATT
76657231 CTCATTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 22 0.85
18 4 0.15
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (18 bp):
TTTCAAAAATTTTCGTGT
Found at i:76658616 original size:12 final size:12
Alignment explanation
Indices: 76658599--76658634 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
76658589 ATTCATTTGA
76658599 CATTCATGCATT
1 CATTCATGCATT
*
76658611 CATTCATGCATC
1 CATTCATGCATT
*
76658623 CATTCATTCATT
1 CATTCATGCATT
76658635 GCATATCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:76658628 original size:16 final size:17
Alignment explanation
Indices: 76658607--76658638 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
76658597 GACATTCATG
76658607 CATTCATTCA-TGCATC
1 CATTCATTCATTGCATC
76658623 CATTCATTCATTGCAT
1 CATTCATTCATTGCAT
76658639 ATCCCATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.41
Consensus pattern (17 bp):
CATTCATTCATTGCATC
Found at i:76666929 original size:77 final size:74
Alignment explanation
Indices: 76666836--76667118 Score: 307
Period size: 65 Copynumber: 3.9 Consensus size: 74
76666826 GTTTTATTTC
* * *
76666836 AAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAA--TT
**
76666901 TTCGTATGTTTC
64 TT-GTATGTTAA
* *
76666913 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTCAA----
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTT
*
76666974 --A---AAA
66 GTATGTTAA
* * *
76666978 AAAAATCAACTCATAGTGCGACAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT-
*
76667043 TGT-TGTCAA
65 TGTATGTTAA
* * *
76667052 AAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GACACGCTGAGGTATTTTCAATT
76667117 TT
64 TT
76667119 CGTTTTTCAA
Statistics
Matches: 174, Mismatches: 20, Indels: 26
0.79 0.09 0.12
Matches are distributed among these distances:
65 56 0.32
68 1 0.01
74 37 0.21
75 3 0.02
76 21 0.12
77 56 0.32
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTT
GTATGTTAA
Found at i:76667116 original size:76 final size:74
Alignment explanation
Indices: 76666976--76667117 Score: 212
Period size: 74 Copynumber: 1.9 Consensus size: 74
76666966 ATTTTCAAAA
* * *
76666976 AAAAAAATCAACTCATAGTGCGACAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATAGTGCGACAGGCGAGTTGAGCCTCGGCACACGCCGAGGTAATTTCAATT
76667041 TCTGTTGTC
66 TCTGTTGTC
* * *
76667050 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATAGTGCGACAGGCGAGTTGAGCCTC-GG-CACACGCCGAGGTAATTTCAA
76667115 TTT
64 TTT
76667118 TCGTTTTTCA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
74 37 0.62
75 2 0.03
76 21 0.35
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (74 bp):
AAAAAAATCAACTCATAGTGCGACAGGCGAGTTGAGCCTCGGCACACGCCGAGGTAATTTCAATT
TCTGTTGTC
Found at i:76667250 original size:75 final size:77
Alignment explanation
Indices: 76667123--76667286 Score: 235
Period size: 75 Copynumber: 2.1 Consensus size: 77
76667113 AATTTTCGTT
*
76667123 TTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-A
1 TTTCAATTTCTG-CTTTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCA
*
76667187 CACGCTGAGGTAA
65 CACGCCGAGGTAA
*
76667200 TTTCAATTTCTG-TTGT-AAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTC
1 TTTCAATTTCTGCTT-TCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-C
* *
76667263 ACATGCCGAGGTAT
64 ACACGCCGAGGTAA
76667277 TTTCAATTTC
1 TTTCAATTTC
76667287 CGTTTTTCAA
Statistics
Matches: 79, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
75 45 0.57
76 1 0.01
77 33 0.42
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (77 bp):
TTTCAATTTCTGCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
ACGCCGAGGTAA
Found at i:76667315 original size:167 final size:166
Alignment explanation
Indices: 76666974--76667433 Score: 640
Period size: 167 Copynumber: 2.7 Consensus size: 166
76666964 GTATTTTCAA
* * *
76666974 AAAAAAAAATCAACTCATAGTGCGACAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAA
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
76667039 TTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGA
66 TTTCTGTTGT-AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGA
*
76667104 GGTATTTTCAATTTTCGTTTTTCAATTTCTGCCTTTC
130 GGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
76667141 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
* *
76667206 TTTCTGTTGTAAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACATGCCG
66 TTTCTGTTGT--AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCG
76667271 AGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
129 AGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
* * * * * * * * *
76667309 -AAAAAAAATCGACTTATATTACAAGAGGTAAGTTGAACCT-TGG-CTTACGTGCTGAGCTATTT
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC--AC--GCTGAGGTAATT
** * * *
76667371 TCAATTTCTGTCT-TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC
62 TCAATTTCTGT-TGTAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACAC
76667434 ACTAAGGTAT
Statistics
Matches: 264, Mismatches: 23, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
165 1 0.00
166 2 0.01
167 150 0.57
168 88 0.33
169 22 0.08
170 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30
Consensus pattern (166 bp):
AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
TTTCTGTTGTAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAG
GTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
Found at i:76667533 original size:79 final size:79
Alignment explanation
Indices: 76667387--76667533 Score: 177
Period size: 79 Copynumber: 1.9 Consensus size: 79
76667377 TCTGTCTTTC
* * * * ***
76667387 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTAAGGTATTTTTTCAA
1 AAAAATCAACGCACATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACCAAGGTATTTTAAAAA
76667452 TTTATATTTTTCAA
66 TTTATATTTTTCAA
* * * ** *
76667466 AAAAATCAACGCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTAAAAA
1 AAAAATCAACGCACATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACCAAGGTATTTTAAAAA
76667531 TTT
66 TTT
76667534 GTTTTTCAAA
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
79 55 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.31
Consensus pattern (79 bp):
AAAAATCAACGCACATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACCAAGGTATTTTAAAAA
TTTATATTTTTCAA
Found at i:76667593 original size:24 final size:24
Alignment explanation
Indices: 76667559--76667607 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
76667549 TTTTCAAAAA
*
76667559 TCAACTTATATTGCGAGAAGTGAG
1 TCAACTCATATTGCGAGAAGTGAG
76667583 TCAACTCATATTGCGAGAAGTGAG
1 TCAACTCATATTGCGAGAAGTGAG
76667607 T
1 T
76667608 TGAGCCTTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (24 bp):
TCAACTCATATTGCGAGAAGTGAG
Found at i:76668581 original size:18 final size:18
Alignment explanation
Indices: 76668554--76668601 Score: 89
Period size: 17 Copynumber: 2.7 Consensus size: 18
76668544 TTAAGCCTCC
76668554 CCCCAAAAAAAAACCTAA
1 CCCCAAAAAAAAACCTAA
76668572 -CCCAAAAAAAAACCTAA
1 CCCCAAAAAAAAACCTAA
76668589 CCCCAAAAAAAAA
1 CCCCAAAAAAAAA
76668602 AAACCAAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
17 17 0.59
18 12 0.41
ACGTcount: A:0.65, C:0.31, G:0.00, T:0.04
Consensus pattern (18 bp):
CCCCAAAAAAAAACCTAA
Found at i:76668995 original size:17 final size:18
Alignment explanation
Indices: 76668973--76669021 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
76668963 CGGCCACCGT
76668973 GGGCGGTGGCCGGCGA-C
1 GGGCGGTGGCCGGCGATC
* *
76668990 GGGCGGCGGCCGACGATC
1 GGGCGGTGGCCGGCGATC
* *
76669008 GGTCGGTGACCGGC
1 GGGCGGTGGCCGGC
76669022 CCCCCCTTGG
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.08, C:0.31, G:0.53, T:0.08
Consensus pattern (18 bp):
GGGCGGTGGCCGGCGATC
Found at i:76669630 original size:15 final size:17
Alignment explanation
Indices: 76669602--76669633 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
76669592 TTGTATATAT
76669602 TATATTTATATTATGTA
1 TATATTTATATTATGTA
76669619 TATATTT-T-TTATGTA
1 TATATTTATATTATGTA
76669634 CGTTTCCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
TATATTTATATTATGTA
Found at i:76670903 original size:22 final size:21
Alignment explanation
Indices: 76670866--76670908 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
76670856 AATAATAACG
*
76670866 ATATATAAACATATAA-ATGT
1 ATATATAAAAATATAATATGT
76670886 ATATATTAAAAATAATAATATGT
1 ATATA-TAAAAAT-ATAATATGT
76670909 GTACATAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 5 0.26
21 6 0.32
22 4 0.21
23 4 0.21
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (21 bp):
ATATATAAAAATATAATATGT
Found at i:76671163 original size:12 final size:12
Alignment explanation
Indices: 76671142--76671172 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
76671132 TTAATAATGC
76671142 TATATA-ACATA
1 TATATATACATA
76671153 TATATATACATA
1 TATATATACATA
76671165 TATATATA
1 TATATATA
76671173 ATGAAAATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.32
12 13 0.68
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATACATA
Done.