Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 232 of 344
Found at i:76673343 original size:18 final size:18
Alignment explanation
Indices: 76673322--76673378 Score: 84
Period size: 17 Copynumber: 3.3 Consensus size: 18
76673312 AAAATTCAAG
76673322 TTTCAAAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
76673340 TTTC-AAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
*
76673357 TTT-AAAAATTTTCAT-T
1 TTTCAAAAATTTTCGTGT
76673373 TTTCAA
1 TTTCAA
76673379 TTGGATCATG
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
16 4 0.11
17 28 0.78
18 4 0.11
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.53
Consensus pattern (18 bp):
TTTCAAAAATTTTCGTGT
Found at i:76677832 original size:3 final size:3
Alignment explanation
Indices: 76677826--76677911 Score: 50
Period size: 3 Copynumber: 28.7 Consensus size: 3
76677816 CTTATATCTT
* * * * *
76677826 TAA TAA TAA TAA TAA TAC TTA TAA TATT TAA TAA TCA TAC T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
* * * * *
76677871 TAA TAC TTA TAA TATT TAA TAA TAA T-A CAA TAA TAA AAA TA
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TA
76677912 TGTTTAACAA
Statistics
Matches: 59, Mismatches: 20, Indels: 8
0.68 0.23 0.09
Matches are distributed among these distances:
2 2 0.03
3 53 0.90
4 4 0.07
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:76677859 original size:19 final size:19
Alignment explanation
Indices: 76677835--76677894 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 19
76677825 TTAATAATAA
76677835 TAATAATACTTATAATATT
1 TAATAATACTTATAATATT
*
76677854 TAATAAT-C--ATACTA--
1 TAATAATACTTATAATATT
76677868 TAATAATACTTATAATATT
1 TAATAATACTTATAATATT
76677887 TAATAATA
1 TAATAATA
76677895 ATACAATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 7 0.21
15 1 0.03
16 5 0.15
17 5 0.15
18 1 0.03
19 15 0.44
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (19 bp):
TAATAATACTTATAATATT
Found at i:76677860 original size:22 final size:21
Alignment explanation
Indices: 76677832--76677872 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
76677822 TCTTTAATAA
76677832 TAATAATAATACTTATAATATT
1 TAATAATAATAC-TATAATATT
*
76677854 TAATAATCATACTATAATA
1 TAATAATAATACTATAATA
76677873 ATACTTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (21 bp):
TAATAATAATACTATAATATT
Found at i:76677871 original size:33 final size:31
Alignment explanation
Indices: 76677807--76677906 Score: 127
Period size: 33 Copynumber: 3.2 Consensus size: 31
76677797 ATGTTGAATA
*
76677807 ATAATAATACTTAT-ATCTTTAAT-A-ATA-
1 ATAATAATACTTATAATATTTAATAATATAC
76677834 ATAATAATACTTATAATATTTAATAATCATAC
1 ATAATAATACTTATAATATTTAATAAT-ATAC
76677866 TATAATAATACTTATAATATTTAATAATAATAC
1 -ATAATAATACTTATAATATTTAATAAT-ATAC
76677899 AATAATAA
1 -ATAATAA
76677907 AAATATGTTT
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
27 14 0.22
28 8 0.12
29 1 0.02
31 3 0.05
33 38 0.59
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (31 bp):
ATAATAATACTTATAATATTTAATAATATAC
Found at i:76681818 original size:22 final size:23
Alignment explanation
Indices: 76681786--76681829 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
76681776 ATTCATAAAA
*
76681786 AATTATAAGTATAAATACAATGT
1 AATTATAAGTACAAATACAATGT
*
76681809 AATTAT-AGTACAATTACAATG
1 AATTATAAGTACAAATACAATG
76681830 GTATGTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.34
Consensus pattern (23 bp):
AATTATAAGTACAAATACAATGT
Found at i:76684342 original size:14 final size:14
Alignment explanation
Indices: 76684325--76684375 Score: 75
Period size: 14 Copynumber: 3.6 Consensus size: 14
76684315 TACAATATTC
76684325 AAATAATAATAACA
1 AAATAATAATAACA
*
76684339 AAATAATAACAACA
1 AAATAATAATAACA
*
76684353 AAATAATAGTAACA
1 AAATAATAATAACA
*
76684367 TAATAATAA
1 AAATAATAA
76684376 AATGGTAACA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.69, C:0.08, G:0.02, T:0.22
Consensus pattern (14 bp):
AAATAATAATAACA
Found at i:76684425 original size:21 final size:21
Alignment explanation
Indices: 76684396--76684435 Score: 64
Period size: 20 Copynumber: 1.9 Consensus size: 21
76684386 AAATAAGGAG
76684396 AAAACAATAAAAAAATAACATT
1 AAAACAAT-AAAAAATAACATT
76684418 AAAA-AATAAAAAATAACA
1 AAAACAATAAAAAATAACA
76684436 GATTTTTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.61
21 3 0.17
22 4 0.22
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (21 bp):
AAAACAATAAAAAATAACATT
Found at i:76685699 original size:56 final size:60
Alignment explanation
Indices: 76685611--76685742 Score: 182
Period size: 56 Copynumber: 2.2 Consensus size: 60
76685601 AAATTAAATT
* *
76685611 TTTTTGAAAACTTAAATTTGATTTGTTTTGAATTTAAATTTTTG-AAAA-AAAA-CTAAAA
1 TTTTTG-AAAGTTAAATTTGATTTATTTTGAATTTAAATTTTTGAAAAACAAAAGCTAAAA
* * *
76685669 TTTTT-AAAGTTAATTTTTATTTATTTTGAATTTAAATTTTTGAAAAACAAAAGCTTAAA
1 TTTTTGAAAGTTAAATTTGATTTATTTTGAATTTAAATTTTTGAAAAACAAAAGCTAAAA
76685728 TTTTTGAAAGTTAAA
1 TTTTTGAAAGTTAAA
76685743 AAATTTTGGA
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
56 33 0.52
57 4 0.06
58 9 0.14
59 10 0.16
60 8 0.12
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (60 bp):
TTTTTGAAAGTTAAATTTGATTTATTTTGAATTTAAATTTTTGAAAAACAAAAGCTAAAA
Found at i:76686054 original size:37 final size:37
Alignment explanation
Indices: 76685993--76686100 Score: 117
Period size: 37 Copynumber: 2.9 Consensus size: 37
76685983 TTTATAAAAA
**
76685993 AATCTTTACTATTCTTCTCCGTCTTTTCTTTGCAGAG
1 AATCTTTACTATTGATCTCCGTCTTTTCTTTGCAGAG
** * * *
76686030 AATCTTTACTATTGATCTTTGTCTTTTTTTTTCGGAG
1 AATCTTTACTATTGATCTCCGTCTTTTCTTTGCAGAG
** * *
76686067 AAAATTTATTACTGATCTCCGTCTTTTCTTTGCA
1 AATCTTTACTATTGATCTCCGTCTTTTCTTTGCA
76686101 TAATTGTTCT
Statistics
Matches: 55, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.19, C:0.19, G:0.11, T:0.51
Consensus pattern (37 bp):
AATCTTTACTATTGATCTCCGTCTTTTCTTTGCAGAG
Found at i:76688848 original size:49 final size:49
Alignment explanation
Indices: 76688776--76688949 Score: 240
Period size: 49 Copynumber: 3.5 Consensus size: 49
76688766 CTGGTACGCA
76688776 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTAGTACACG
* * * * *
76688825 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCTAGTACACG
* ** *
76688875 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTAGTACACG
* *
76688924 TAGTAGCTTGCATTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
76688950 CGTGACCTCA
Statistics
Matches: 109, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
49 66 0.61
50 43 0.39
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTAGTACACG
Found at i:76688947 original size:99 final size:99
Alignment explanation
Indices: 76688776--76688960 Score: 316
Period size: 99 Copynumber: 1.9 Consensus size: 99
76688766 CTGGTACGCA
* *
76688776 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTAGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCAACAATCCAGTACACGTAGTAGCCTGCACTTA
76688841 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGTGACCTCACCATCTAATACACG
** * *
76688875 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCAGTACACGTAGTAGCTTGCATTTA
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCAACAATCCAGTACACGTAGTAGCCTGCACTTA
76688940 GTACTACACACGTGACCTCAC
66 GTACTACACACGTGACCTCAC
76688961 AATAGCTCAT
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 80 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGCAACCAACAATCCAGTACACGTAGTAGCCTGCACTTA
GTACTACACACGTGACCTCACCATCTAATACACG
Found at i:76694581 original size:33 final size:33
Alignment explanation
Indices: 76694538--76694605 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
76694528 AAACAAACCT
*
76694538 AAATTAGGCTTCTTTCATCATAATACAACAAAA
1 AAATCAGGCTTCTTTCATCATAATACAACAAAA
76694571 AAATCAGGCTTCTTTCATCATAATACAACAAAA
1 AAATCAGGCTTCTTTCATCATAATACAACAAAA
76694604 AA
1 AA
76694606 GGTCCAGGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.47, C:0.19, G:0.06, T:0.28
Consensus pattern (33 bp):
AAATCAGGCTTCTTTCATCATAATACAACAAAA
Found at i:76702881 original size:14 final size:13
Alignment explanation
Indices: 76702860--76702891 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
76702850 GTAATATCAA
76702860 AACAATAATTAAG
1 AACAATAATTAAG
76702873 AACACATAATTAAG
1 AACA-ATAATTAAG
76702887 AACAA
1 AACAA
76702892 GTCAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:76704023 original size:15 final size:16
Alignment explanation
Indices: 76703991--76704024 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
76703981 CTTACTGAGG
76703991 GTTCATCACATAATGA
1 GTTCATCACATAATGA
*
76704007 GTTCATCACGT-ATGA
1 GTTCATCACATAATGA
76704022 GTT
1 GTT
76704025 TTTTTGTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (16 bp):
GTTCATCACATAATGA
Found at i:76705012 original size:12 final size:12
Alignment explanation
Indices: 76704995--76705022 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
76704985 AGATGGACAA
76704995 AATTTGGCTTTT
1 AATTTGGCTTTT
76705007 AATTTGGCTTTT
1 AATTTGGCTTTT
76705019 AATT
1 AATT
76705023 CATTTATTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.57
Consensus pattern (12 bp):
AATTTGGCTTTT
Found at i:76709187 original size:16 final size:16
Alignment explanation
Indices: 76709166--76709196 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76709156 GTATGGATAA
*
76709166 ATAAGTAAATTAAATC
1 ATAAGTAAATAAAATC
76709182 ATAAGTAAATAAAAT
1 ATAAGTAAATAAAAT
76709197 ATATTATTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.29
Consensus pattern (16 bp):
ATAAGTAAATAAAATC
Found at i:76716533 original size:42 final size:42
Alignment explanation
Indices: 76716486--76716582 Score: 149
Period size: 42 Copynumber: 2.3 Consensus size: 42
76716476 ATAGCCCAAC
*
76716486 TATGGTCTTACACGAAATATCAGATCGATGCCATATCCCAGA
1 TATGGTCTTACACGAAATATCACATCGATGCCATATCCCAGA
* * * *
76716528 TATGGTTTTACACGAAGTTTCACATTGATGCCATATCCCAGA
1 TATGGTCTTACACGAAATATCACATCGATGCCATATCCCAGA
76716570 TATGGTCTTACAC
1 TATGGTCTTACAC
76716583 ATAGTCTCAG
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (42 bp):
TATGGTCTTACACGAAATATCACATCGATGCCATATCCCAGA
Found at i:76718032 original size:15 final size:15
Alignment explanation
Indices: 76718009--76718061 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 15
76717999 GATGAACCCT
*
76718009 TATGACGAACTCACC
1 TATGGCGAACTCACC
76718024 TATGGCGAAC-C-CC
1 TATGGCGAACTCACC
* *
76718037 TATGGCAAACTCACA
1 TATGGCGAACTCACC
76718052 TATGGCGAAC
1 TATGGCGAAC
76718062 CCCTATCATG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
13 11 0.34
14 2 0.06
15 19 0.59
ACGTcount: A:0.32, C:0.30, G:0.19, T:0.19
Consensus pattern (15 bp):
TATGGCGAACTCACC
Found at i:76718034 original size:28 final size:28
Alignment explanation
Indices: 76718002--76718067 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 28
76717992 TATCATTGAT
* * *
76718002 GAACCCTTATGACGAACTCACCTATGGC
1 GAACCCCTATGACAAACTCACATATGGC
*
76718030 GAACCCCTATGGCAAACTCACATATGGC
1 GAACCCCTATGACAAACTCACATATGGC
76718058 GAACCCCTAT
1 GAACCCCTAT
76718068 CATGAACTGC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.30, C:0.33, G:0.17, T:0.20
Consensus pattern (28 bp):
GAACCCCTATGACAAACTCACATATGGC
Found at i:76718040 original size:13 final size:13
Alignment explanation
Indices: 76718002--76718067 Score: 60
Period size: 15 Copynumber: 4.8 Consensus size: 13
76717992 TATCATTGAT
* *
76718002 GAACCCTTATGAC
1 GAACCCCTATGGC
76718015 GAACTCACCTATGGC
1 GAAC-C-CCTATGGC
76718030 GAACCCCTATGGC
1 GAACCCCTATGGC
* *
76718043 AAACTCACATATGGC
1 GAAC-C-CCTATGGC
76718058 GAACCCCTAT
1 GAACCCCTAT
76718068 CATGAACTGC
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
13 19 0.44
14 4 0.09
15 20 0.47
ACGTcount: A:0.30, C:0.33, G:0.17, T:0.20
Consensus pattern (13 bp):
GAACCCCTATGGC
Found at i:76718075 original size:28 final size:28
Alignment explanation
Indices: 76718002--76718075 Score: 82
Period size: 28 Copynumber: 2.6 Consensus size: 28
76717992 TATCATTGAT
* *
76718002 GAACCCTTATG-ACGAACTCACCTATGGC
1 GAACCCCTATGCA-GAACTCACATATGGC
76718030 GAACCCCTATGGCA-AACTCACATATGGC
1 GAACCCCTAT-GCAGAACTCACATATGGC
76718058 GAACCCCTAT-CATGAACT
1 GAACCCCTATGCA-GAACT
76718076 GCCTTAATCC
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
26 2 0.05
28 36 0.90
29 1 0.03
30 1 0.03
ACGTcount: A:0.31, C:0.32, G:0.16, T:0.20
Consensus pattern (28 bp):
GAACCCCTATGCAGAACTCACATATGGC
Found at i:76727077 original size:21 final size:22
Alignment explanation
Indices: 76727052--76727099 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
76727042 AACAGAGAAT
* *
76727052 GAAAACGAAATAGAAAGAAAA-
1 GAAAACGAAAAAAAAAGAAAAG
*
76727073 GAAAAGGAAAAAAAAAGAAAAG
1 GAAAACGAAAAAAAAAGAAAAG
76727095 GAAAA
1 GAAAA
76727100 ATTAGGGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.75, C:0.02, G:0.21, T:0.02
Consensus pattern (22 bp):
GAAAACGAAAAAAAAAGAAAAG
Found at i:76727088 original size:16 final size:16
Alignment explanation
Indices: 76727069--76727100 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
76727059 AAATAGAAAG
76727069 AAAAGAAAAGGAAAAA
1 AAAAGAAAAGGAAAAA
76727085 AAAAGAAAAGGAAAAA
1 AAAAGAAAAGGAAAAA
76727101 TTAGGGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAGGAAAAA
Found at i:76734722 original size:180 final size:176
Alignment explanation
Indices: 76734220--76735193 Score: 1052
Period size: 176 Copynumber: 5.5 Consensus size: 176
76734210 GGTTGATGGG
* * * * *
76734220 TTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTTACCATTTTCGACCTACTCCGTTGCAA
1 TTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCTACTCCGCTACAA
* * * * * * *
76734285 CTTCAGGGAGACAAGATCTTAA-TCTTCAATCTGATTTCTTGCTATCTCAGAAAGATAAGACTCA
66 CTTCAGGGAGATAAAATCTTAATTC-TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCA
* * * *
76734349 TTCTTCAACCTGCTCTCTTACTACCTCAAAGAGATAAGG-TAAGTAGC
130 TTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCT-TGTGGC
* * * *
76734396 TAAAATCTGTTCCATTGCTGATACATGGAGATAAGATTCACCATCTTCGATCTACTCCACTACAA
1 TTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCTACTCCGCTACAA
* * *
76734461 CTTCAGGGAGATAAGATCTTCAA-TCTTTAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTC
66 CTTCAGGGAGATAAAATCTT-AATTC-TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTC
* * * * * *
76734525 AATCTTTAACTTGCTCTCTTCCTACCTTAGAGAGATAAGGCTTGGGGC
129 ATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGTGGC
* * ** * * *
76734573 TTCAGTCTGCTCCATTGCCGATACATGGAGATAAGATTTGCCATCTTCGATGATCTGCTCTGCTG
1 TTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTC---GATCTACTCCGCTA
76734638 CAACTTCAGGGAGATAAAATCTTAAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGAC
63 CAACTTCAGGGAGATAAAATCTT-AATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGAC
* *
76734703 TCATTCTTCAACCTGCTCTCTTGCTATCTCAGAGAGATAAGACTTGTGGC
127 TCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGTGGC
* * * **
76734753 TTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCGTCTTCGATCTGCTCTGCTACTG
1 TTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCTACTCCGCTACAA
* * ** * * *
76734818 CTT-AGGGAGAT-AAATCTGTGATTTTCAGTCTGC-TCCACCGCAACTTTAAGG-AGATAAGACT
66 CTTCAGGGAGATAAAATCT-TAATTCTCAGTCTGCTTCC-TTGCTAC-CTCAGGAAGATAAGACT
** * * * * * * * *
76734879 TGTATATTGAGCTTGCTC-CACTGCAACTTCAGGGAGATAAGGCTTGTGGC
128 CAT-TCTTCAACCTGCTCTC-TTGCTACCTCAGAGAGATAAGGCTTGTGGC
* * * *
76734929 TTAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTA
1 TTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCTACTCCGCTACAA
* * * * *
76734994 CTT-AGGGAGAT-AAATCTGAGATTTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTTA
66 CTTCAGGGAGATAAAATCTTA-ATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGAC-TC
*
76735057 ATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGG-
129 ATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGTGGC
* * * *
76735104 TAAAATCTGCTCCATTTCCGATACATAGAGATAAGATTCACCATCTTCGATCTACTCCGCTGCAA
1 TTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCTACTCCGCTACAA
*
76735169 CTTCAGGGAGATAAGATCTTCAATT
66 CTTCAGGGAGATAAAATCTT-AATT
76735194 TTCACCAATA
Statistics
Matches: 668, Mismatches: 111, Indels: 37
0.82 0.14 0.05
Matches are distributed among these distances:
174 3 0.00
175 97 0.15
176 267 0.40
177 144 0.22
178 2 0.00
180 153 0.23
181 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (176 bp):
TTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTCGATCTACTCCGCTACAA
CTTCAGGGAGATAAAATCTTAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAT
TCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGTGGC
Found at i:76734850 original size:88 final size:87
Alignment explanation
Indices: 76734758--76735027 Score: 228
Period size: 88 Copynumber: 3.1 Consensus size: 87
76734748 GTGGCTTAAA
* *
76734758 TCTGCTCCATTGCCGATACATGGAGATAAGATTCACCGTCTTCGATCTGCTCTGCTACTGCTTAG
1 TCTGCTCCATTGCCGATACATGGAGATAAGATTC-CCGTCTTCGATCTGCTCCGCTACTACTTAG
76734823 GGAGATAAATCTGTGATTTTCAG
65 GGAGATAAATCTGTGATTTTCAG
** ** * * * * * *
76734846 TCTGCTCCACCGCAACTTTA-A-GGAGATAAGACTT---GTATATTGAGCTTGCTCCACTGCAAC
1 TCTGCTCCATTGC--CGATACATGGAGATAAGA-TTCCCGTCT-TCGATC-TGCTCCGCTACTAC
** ** * *
76734906 TTCAGGGAGATAAGGCTTGTG-GCTTAAA
61 TT-AGGGAGATAAATC-TGTGATTTTCAG
* *
76734934 TCTGCTCCATTGTCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTACTTAG
1 TCTGCTCCATTGCCGATACATGGAGATAAGATTC-CCGTCTTCGATCTGCTCCGCTACTACTTAG
*
76734999 GGAGATAAATCTGAGATTTTCAG
65 GGAGATAAATCTGTGATTTTCAG
76735022 TCTGCT
1 TCTGCT
76735028 TTCTTGCTAC
Statistics
Matches: 131, Mismatches: 37, Indels: 28
0.67 0.19 0.14
Matches are distributed among these distances:
85 3 0.02
86 7 0.05
87 17 0.13
88 75 0.57
89 20 0.15
90 7 0.05
91 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.31
Consensus pattern (87 bp):
TCTGCTCCATTGCCGATACATGGAGATAAGATTCCCGTCTTCGATCTGCTCCGCTACTACTTAGG
GAGATAAATCTGTGATTTTCAG
Found at i:76743610 original size:19 final size:19
Alignment explanation
Indices: 76743586--76743625 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
76743576 TATTGCCTTT
*
76743586 AATGCATATG-ATGTAATGC
1 AATGCAAATGCATG-AATGC
76743605 AATGCAAATGCATGAATGC
1 AATGCAAATGCATGAATGC
76743624 AA
1 AA
76743626 ATGAGGAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 16 0.84
20 3 0.16
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.25
Consensus pattern (19 bp):
AATGCAAATGCATGAATGC
Found at i:76753909 original size:18 final size:18
Alignment explanation
Indices: 76753882--76753933 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
76753872 TGTGTACCAC
*
76753882 TACTGCTACTATTACTGT
1 TACTGTTACTATTACTGT
* *
76753900 TACTGTTACTGTTAATGT
1 TACTGTTACTATTACTGT
76753918 TACTGTTACTATTACT
1 TACTGTTACTATTACT
76753934 ACTACGGTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.23, C:0.17, G:0.12, T:0.48
Consensus pattern (18 bp):
TACTGTTACTATTACTGT
Found at i:76753934 original size:6 final size:6
Alignment explanation
Indices: 76753882--76753933 Score: 68
Period size: 6 Copynumber: 8.7 Consensus size: 6
76753872 TGTGTACCAC
* * * *
76753882 TACTGC TACTAT TACTGT TACTGT TACTGT TAATGT TACTGT TACTAT
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT
76753930 TACT
1 TACT
76753934 ACTACGGTGT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.23, C:0.17, G:0.12, T:0.48
Consensus pattern (6 bp):
TACTGT
Found at i:76762409 original size:42 final size:43
Alignment explanation
Indices: 76762341--76762435 Score: 115
Period size: 42 Copynumber: 2.2 Consensus size: 43
76762331 TCCTAGATAT
* *
76762341 GGTCTTACATGATATCAAATATCGATGCCACTAT-TC-CAGACAG
1 GGTCTTACACGAAATCAAATATCGATGCCA--ATGTCTCAGACAG
* *
76762384 GGTCTTACACGAAATCATATA-CGATGCCAATGTCTCAGACAT
1 GGTCTTACACGAAATCAAATATCGATGCCAATGTCTCAGACAG
76762426 GGTCTTACAC
1 GGTCTTACAC
76762436 AATATCACAT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
40 2 0.04
41 2 0.04
42 24 0.52
43 18 0.39
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGCCAATGTCTCAGACAG
Found at i:76767155 original size:39 final size:40
Alignment explanation
Indices: 76767112--76767279 Score: 139
Period size: 40 Copynumber: 4.2 Consensus size: 40
76767102 CTCGTTCAAG
* * * *
76767112 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
76767151 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
** * *
76767191 TGCCTTCGGGACTTAACCCGGAATTAGT--ATTTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
76767231 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
76767271 TGCCTTCGG
1 TGCCTTCGG
76767280 ATCTTAGTCC
Statistics
Matches: 109, Mismatches: 14, Indels: 11
0.81 0.10 0.08
Matches are distributed among these distances:
39 26 0.24
40 79 0.72
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:76767263 original size:80 final size:80
Alignment explanation
Indices: 76767147--76767332 Score: 236
Period size: 80 Copynumber: 2.3 Consensus size: 80
76767137 AGTAACTCAT
* * *
76767147 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
76767211 GA-ATTAGT-ATTTCGC
65 GATA-TAGTCACTTAGC
**
76767226 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
76767290 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
76767307 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
76767333 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 11 0.12
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:76767292 original size:40 final size:40
Alignment explanation
Indices: 76767149--76767332 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
76767139 TAACTCATAC
* *
76767149 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* **
76767189 AATGCCTTCGGGACTTAACCCGGAATTAGTATTTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
76767229 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
76767269 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
76767310 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
76767333 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:76775203 original size:80 final size:80
Alignment explanation
Indices: 76775087--76775272 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
76775077 AGTAACTCAT
* * * *
76775087 ACAATGCCTTCGGGACTTAACCTGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
76775151 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
76775166 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
76775230 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
76775247 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
76775273 CAGCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
79 11 0.12
80 71 0.76
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:76775232 original size:40 final size:40
Alignment explanation
Indices: 76775089--76775272 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
76775079 TAACTCATAC
* * *
76775089 AATGCCTTCGGGACTTAACCTGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
76775129 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
76775169 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
76775209 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
76775250 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
76775273 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
39 8 0.07
40 104 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:76795950 original size:40 final size:40
Alignment explanation
Indices: 76795902--76796147 Score: 368
Period size: 40 Copynumber: 6.2 Consensus size: 40
76795892 GGACTAAGAT
* * *
76795902 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGCC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
76795942 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
76795982 CCAAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
76796022 CCGAAGGCATTTGTGCGAGTTACTATATCCGAGCCAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
76796062 CCGAAGGCATTTGGGCGAGTTACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* * * * *
76796102 CCGAAAGCATTTGTGCGAATTGCTATATCC-GGCAAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
76796141 CCGAAGG
1 CCGAAGG
76796148 TACTTGGGTT
Statistics
Matches: 187, Mismatches: 19, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
39 13 0.07
40 174 0.93
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:76800188 original size:17 final size:18
Alignment explanation
Indices: 76800155--76800189 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
76800145 GCTTCACATT
*
76800155 CTAGAATAATAAAATTTG
1 CTAGAAAAATAAAATTTG
76800173 CTAGAAAAAT-AAATTTG
1 CTAGAAAAATAAAATTTG
76800190 TCAACTCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.51, C:0.06, G:0.11, T:0.31
Consensus pattern (18 bp):
CTAGAAAAATAAAATTTG
Found at i:76813886 original size:40 final size:40
Alignment explanation
Indices: 76813857--76813985 Score: 188
Period size: 40 Copynumber: 3.2 Consensus size: 40
76813847 ACTAAGATCT
76813857 GAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCC
1 GAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCC
* ** *
76813897 GAAGGCCTTTGTGCGAAATACTAATTCCGGGTTAAGTCCC
1 GAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCC
* *
76813937 GAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTCCC
1 GAAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTCCC
76813977 GAAGGCATT
1 GAAGGCATT
76813986 GTATGAGTTA
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 1 0.01
40 77 0.99
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (40 bp):
GAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCC
Found at i:76813941 original size:80 final size:81
Alignment explanation
Indices: 76813802--76813982 Score: 228
Period size: 80 Copynumber: 2.3 Consensus size: 81
76813792 TTGAATGCTG
* * * *
76813802 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCTGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAATGACTATATCCGGACTAAGATCCGAAGGCATT
* *
76813866 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
76813882 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAATGACTATA-TCCGGACTAAGAT-CCGAAGGCA
76813944 TTCGTGCGAGTTTTAAAA
64 TTCGTGCGAGTTTTAAAA
76813962 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
76813983 ATTGTATGAG
Statistics
Matches: 89, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
79 4 0.04
80 74 0.83
81 11 0.12
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAATGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:76814006 original size:39 final size:38
Alignment explanation
Indices: 76813803--76814022 Score: 156
Period size: 40 Copynumber: 5.6 Consensus size: 38
76813793 TGAATGCTGT
* * * * *
76813803 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTA-AA
** * * *
76813843 CCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTATTAATT
1 CCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* ** *
76813883 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAA-A
*
76813923 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACT-AAA
**
76813962 TCCGGGTTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTA-AA
* *
76814002 CCGGGCTATGTCCCGAAGGCA
1 CCGGGTTAAGTCCCGAAGGCA
76814023 CTTGAACGAG
Statistics
Matches: 147, Mismatches: 23, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
39 33 0.22
40 106 0.72
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:76829877 original size:79 final size:81
Alignment explanation
Indices: 76829742--76829925 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 81
76829732 TGAATGATGG
*
76829742 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
76829806 GTGCGAGATACTA-ATT
66 GTGCGAGATACTATA-A
* * * **
76829822 CCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
*
76829884 TGTGCGAGTTACTATAA
65 TGTGCGAGATACTATAA
*
76829901 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
76829926 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.64
80 32 0.35
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATAA
Found at i:76829939 original size:40 final size:40
Alignment explanation
Indices: 76829742--76829925 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
76829732 TGAATGATGG
* * * *
76829742 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
76829782 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
76829822 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
76829860 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
76829901 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
76829926 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:76829947 original size:79 final size:79
Alignment explanation
Indices: 76829794--76829958 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
76829784 GGACTAAGAT
* **
76829794 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
76829859 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
76829873 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
76829936 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
76829952 CCGAAGG
1 CCGAAGG
76829959 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:76837430 original size:40 final size:40
Alignment explanation
Indices: 76837347--76837532 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
76837337 TTGAATGATG
* * * *
76837347 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
76837387 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76837427 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76837467 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
76837508 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76837533 AACGAGTAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76837539 original size:80 final size:79
Alignment explanation
Indices: 76837400--76837565 Score: 228
Period size: 80 Copynumber: 2.1 Consensus size: 79
76837390 GGACTAAGAT
* **
76837400 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
*
76837464 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
*
76837480 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
* *
76837544 ATATCCGGTTAAATT
65 AAATCCGGTTAAATC
76837559 CCGAAGG
1 CCGAAGG
76837566 TACGTGATTT
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
79 16 0.21
80 59 0.77
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:76843651 original size:15 final size:16
Alignment explanation
Indices: 76843613--76843654 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
76843603 TTTTGCTCTC
*
76843613 CATTTTGGTTGTTGTTA
1 CATTTTTGTT-TTGTTA
76843630 C-TTTTTGTTTT-TTA
1 CATTTTTGTTTTGTTA
76843644 CATTTTTGTTT
1 CATTTTTGTTT
76843655 GAGGCCGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 4 0.17
15 11 0.48
16 7 0.30
17 1 0.04
ACGTcount: A:0.10, C:0.07, G:0.14, T:0.69
Consensus pattern (16 bp):
CATTTTTGTTTTGTTA
Found at i:76852598 original size:57 final size:58
Alignment explanation
Indices: 76852467--76852612 Score: 174
Period size: 57 Copynumber: 2.5 Consensus size: 58
76852457 GTTGTTAACG
* **
76852467 GGATTTAGCCTGGATTGGTAATCCTGATATAATTCCTTTCGAGCATATGTTACAATTA
1 GGATTTAGCCTGGATTGGTAATCCTGATATAATTCCTTTCGAGCATATATTACAAAAA
*
76852525 GGATTTAGCCTGGATTGGTAATCCTGAT-TGAGA-T-C-TTCTGAGCATATATTGCAAAAA
1 GGATTTAGCCTGGATTGGTAATCCTGATAT-A-ATTCCTTTC-GAGCATATATTACAAAAA
* * *
76852582 GGATTTAGCCTAGATTGGTAACCCTGTTATA
1 GGATTTAGCCTGGATTGGTAATCCTGATATA
76852613 TGTTATAAGG
Statistics
Matches: 77, Mismatches: 7, Indels: 9
0.83 0.08 0.10
Matches are distributed among these distances:
56 3 0.04
57 42 0.55
58 31 0.40
59 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (58 bp):
GGATTTAGCCTGGATTGGTAATCCTGATATAATTCCTTTCGAGCATATATTACAAAAA
Found at i:76860826 original size:39 final size:39
Alignment explanation
Indices: 76860772--76860852 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
76860762 ATAATTTGTG
*
76860772 ATAGTGTGATGACTCCAGATCATTTTAAATGTGTTTTTC
1 ATAGTGTGATGACTCCAGATCATTTTAAATATGTTTTTC
*
76860811 ATAGTGTGATGACTCCTGATCATTTTAAATATGTTTTTC
1 ATAGTGTGATGACTCCAGATCATTTTAAATATGTTTTTC
76860850 ATA
1 ATA
76860853 TAGTAATGTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.27, C:0.12, G:0.16, T:0.44
Consensus pattern (39 bp):
ATAGTGTGATGACTCCAGATCATTTTAAATATGTTTTTC
Found at i:76866577 original size:25 final size:25
Alignment explanation
Indices: 76866548--76866595 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
76866538 TTATAATATG
* * *
76866548 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
76866573 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
76866596 GTTTCTATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:76866662 original size:20 final size:20
Alignment explanation
Indices: 76866639--76866697 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
76866629 TAAACATGGT
76866639 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
76866659 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
76866679 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
76866698 GGTATTCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:76866679 original size:11 final size:11
Alignment explanation
Indices: 76866643--76866697 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
76866633 CATGGTATGT
76866643 ATGATATGCAC
1 ATGATATGCAC
* *
76866654 ATGACATG--T
1 ATGATATGCAC
76866663 ATGATATGCAC
1 ATGATATGCAC
*
76866674 ATGATATG--T
1 ATGATATGCAC
76866683 ATGATATGCAC
1 ATGATATGCAC
76866694 ATGA
1 ATGA
76866698 GGTATTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:76866779 original size:24 final size:24
Alignment explanation
Indices: 76866748--76866891 Score: 182
Period size: 24 Copynumber: 6.0 Consensus size: 24
76866738 GAGGAAGCGC
76866748 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
76866772 AAATGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
76866796 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
76866820 AAAAGGGTTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* * * * *
76866844 CAAAGGGTTTTTGTCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
76866868 AAAAGAGGCTT-GGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
76866892 ATGATAAAGC
Statistics
Matches: 105, Mismatches: 13, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
24 93 0.89
25 12 0.11
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.31
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:76871098 original size:150 final size:150
Alignment explanation
Indices: 76870823--76871121 Score: 544
Period size: 150 Copynumber: 2.0 Consensus size: 150
76870813 CCTCGAAAGA
76870823 TTGAGGCAATTTTGAAATGGAAGCCACCGAAGTCGGTAATAAAGATCCGAAGTTTTCTAGGGTTG
1 TTGAGGCAATTTTGAAATGGAAGCCACCGAAGTCGGTAATAAAGATCCGAAGTTTTCTAGGGTTG
* *
76870888 GCAGGTTAATATCGGAGATTCGTGGAAGGATTTTCTGTGTTGGTAGCACCATTAATGAAACATAT
66 GCAGGTTAATATCGGAGATTCGTGGAAGAATTTTCTGTGTTGGTAGCACCATTAACGAAACATAT
76870953 AAGGAAGGGAGCACCTTTTG
131 AAGGAAGGGAGCACCTTTTG
* *
76870973 TTGAGGCAATTTTGAAATGGAAGCCACCGAAGTCGGTAATAGAGATCCGAAGTTTTCTGGGGTTG
1 TTGAGGCAATTTTGAAATGGAAGCCACCGAAGTCGGTAATAAAGATCCGAAGTTTTCTAGGGTTG
* *
76871038 GCAGGTTATTATCGGAGATTCGTGGAAGAATTTTCTGTGTTGGTAGCACCGTTAACGAAACATAT
66 GCAGGTTAATATCGGAGATTCGTGGAAGAATTTTCTGTGTTGGTAGCACCATTAACGAAACATAT
76871103 AAGGAAGGGAGCACCTTTT
131 AAGGAAGGGAGCACCTTTT
76871122 ATTTGGACAA
Statistics
Matches: 143, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
150 143 1.00
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (150 bp):
TTGAGGCAATTTTGAAATGGAAGCCACCGAAGTCGGTAATAAAGATCCGAAGTTTTCTAGGGTTG
GCAGGTTAATATCGGAGATTCGTGGAAGAATTTTCTGTGTTGGTAGCACCATTAACGAAACATAT
AAGGAAGGGAGCACCTTTTG
Found at i:76874932 original size:20 final size:20
Alignment explanation
Indices: 76874903--76874948 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
76874893 ATTTTGATAA
*
76874903 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
76874923 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
76874943 ACATGA
1 ACATGA
76874949 GGTATTCATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:76875026 original size:24 final size:24
Alignment explanation
Indices: 76874999--76875166 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
76874989 GAGCAAGTGC
76874999 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
76875023 AAAAGGGCTTATGCCTCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
76875047 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* * *
76875071 AAAAGGGCCTATGCCACAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
* *
76875095 AAAAGGGTTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
76875119 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
76875143 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
76875167 ATGATAAAGT
Statistics
Matches: 127, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
24 116 0.91
25 11 0.09
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:76879128 original size:24 final size:24
Alignment explanation
Indices: 76879100--76879175 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
76879090 GAACGTGCGT
76879100 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
76879124 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
76879147 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
76879171 ATGTG
1 ATGTG
76879176 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:76879132 original size:47 final size:47
Alignment explanation
Indices: 76879079--76879408 Score: 552
Period size: 47 Copynumber: 7.0 Consensus size: 47
76879069 AGGATTTTAG
*
76879079 GTGATGAATGTGAACGTGCGTATGTGTGATAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAAT
76879126 GTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAAT
*
76879173 GTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCAAT
1 GTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAAT
*
76879220 GTGATGAATGTGAACATGCGTATGTATGATAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAAT
76879267 GTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAAT
* * *
76879314 GTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAAT
** * * * *
76879361 GTGATGAATGTGAACATGTATATATGCGGTAAGGCCGAATGGCTAAT
1 GTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAAT
76879408 G
1 G
76879409 CGAAATGTGT
Statistics
Matches: 271, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 271 1.00
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
GTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAAT
Found at i:76879518 original size:46 final size:46
Alignment explanation
Indices: 76879382--76879518 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
76879372 GAACATGTAT
* * *
76879382 ATATGCGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
76879428 ATATGAGGTAAAGCCGAATGGCTAATGCAAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * * *
76879474 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
76879519 TGTATATATA
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:76881802 original size:40 final size:40
Alignment explanation
Indices: 76881730--76881825 Score: 104
Period size: 40 Copynumber: 2.4 Consensus size: 40
76881720 CTATCTTGGT
* *
76881730 ATTGCACACTTAGTGCGACATAAAACCAAAGCTATTTC-A
1 ATTGCACACTAAGTGCGACATAAAACCAAAGCTATCTCGA
* * * * *
76881769 ATTTGCACACTAAGTGCTATATATAGCCGAAGCTATCTCGA
1 A-TTGCACACTAAGTGCGACATAAAACCAAAGCTATCTCGA
*
76881810 AATGCACACTAAGTGC
1 ATTGCACACTAAGTGC
76881826 CAAACATCGT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.02
40 44 0.94
41 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (40 bp):
ATTGCACACTAAGTGCGACATAAAACCAAAGCTATCTCGA
Found at i:76893635 original size:13 final size:15
Alignment explanation
Indices: 76893617--76893648 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
76893607 TTTATTTATT
76893617 AATCTCTT-CCTC-G
1 AATCTCTTACCTCTG
76893630 AATCTCTTACCTCTG
1 AATCTCTTACCTCTG
76893645 AATC
1 AATC
76893649 AGCTTTTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 4 0.24
15 5 0.29
ACGTcount: A:0.22, C:0.34, G:0.06, T:0.38
Consensus pattern (15 bp):
AATCTCTTACCTCTG
Found at i:76897229 original size:46 final size:46
Alignment explanation
Indices: 76897162--76897335 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
76897152 TAACCCGTCA
*
76897162 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCC
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC
* * * *
76897208 ATAAGTGAACTCAGACTCAACTCAACGAGCTC-GA-ATGC-CTAGTTAC
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--TCC
* * * *
76897254 ATCTCA-CGAACTTGGACTCAACTCAACGAGTTCGGACGTTCGCATCC
1 A--TAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC
* *
76897301 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
76897336 TACCCAAATA
Statistics
Matches: 103, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 3 0.03
46 61 0.59
47 26 0.25
48 4 0.04
49 3 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC
Found at i:76900098 original size:30 final size:29
Alignment explanation
Indices: 76900056--76900112 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 29
76900046 AAAGATAACA
76900056 AGAAAACCGAATAAAGAAATCCAAGATTG
1 AGAAAACCGAATAAAGAAATCCAAGATTG
*
76900085 AGAAACCCAGAATAAAGAAATCCAAGAT
1 AGAAAACC-GAATAAAGAAATCCAAGAT
76900113 ACGATACTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.56, C:0.16, G:0.16, T:0.12
Consensus pattern (29 bp):
AGAAAACCGAATAAAGAAATCCAAGATTG
Found at i:76911276 original size:39 final size:40
Alignment explanation
Indices: 76911231--76911398 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
76911221 CGGGGTTTAG
* * *
76911231 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
76911270 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
76911310 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
76911350 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
76911391 CCGGATAT
1 CCGGATAT
76911399 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:76911381 original size:41 final size:40
Alignment explanation
Indices: 76911254--76911398 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
76911244 CTCGCACAAG
* * * * *
76911254 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
76911294 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
76911334 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
76911375 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
76911399 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:76920249 original size:29 final size:27
Alignment explanation
Indices: 76920231--76920300 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
76920221 ATATTAAGTC
76920231 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
76920258 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
76920286 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
76920301 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:76920294 original size:28 final size:28
Alignment explanation
Indices: 76920231--76920325 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
76920221 ATATTAAGTC
*
76920231 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
76920258 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
76920286 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
76920315 CGCACACTTAG
1 CGCACACTTAG
76920326 CGCCAATCTC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.36
28 23 0.38
29 16 0.26
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:76930456 original size:39 final size:40
Alignment explanation
Indices: 76930411--76930578 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
76930401 CGGGGTTTAG
* * *
76930411 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
76930450 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
76930490 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
76930530 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
76930571 CCGGATAT
1 CCGGATAT
76930579 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:76930561 original size:41 final size:40
Alignment explanation
Indices: 76930434--76930578 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
76930424 CTCGCACAAG
* * * * *
76930434 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
76930474 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
76930514 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
76930555 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
76930579 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:76944426 original size:40 final size:40
Alignment explanation
Indices: 76944145--76944419 Score: 444
Period size: 40 Copynumber: 6.9 Consensus size: 40
76944135 TATTCGGATG
*
76944145 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
76944185 ATAACCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
76944225 ATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
76944265 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
76944305 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
76944345 ATAACCGGGCTAAAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
76944384 ATAACCGGGCTAAATCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
76944420 AGCTATATCC
Statistics
Matches: 219, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 39 0.18
40 180 0.82
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:76952423 original size:40 final size:40
Alignment explanation
Indices: 76952368--76952629 Score: 402
Period size: 40 Copynumber: 6.6 Consensus size: 40
76952358 TATTCGGATG
*
76952368 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
76952408 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
76952448 ATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
76952488 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
76952528 ATATCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
76952568 ATAACCGGGCTAAATTCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
76952608 ATATCC-GGCTAATTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
76952630 TACTTGGTTT
Statistics
Matches: 206, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 16 0.08
40 190 0.92
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:76971696 original size:37 final size:37
Alignment explanation
Indices: 76971646--76971724 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
76971636 TTATTACGAA
* *
76971646 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
76971683 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
76971720 GTCTT
1 GTCTT
76971725 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:76971921 original size:47 final size:47
Alignment explanation
Indices: 76971843--76972224 Score: 602
Period size: 47 Copynumber: 8.1 Consensus size: 47
76971833 CCCTTCGAGA
* * * * * * *
76971843 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
76971890 CTCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76971937 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76971984 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76972031 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76972078 CTTATCACACATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76972125 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
76972174 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76972221 CTTA
1 CTTA
76972225 CTATCATTTC
Statistics
Matches: 312, Mismatches: 21, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 267 0.86
49 45 0.14
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76975662 original size:40 final size:40
Alignment explanation
Indices: 76975617--76975852 Score: 210
Period size: 40 Copynumber: 5.9 Consensus size: 40
76975607 CGAATACATG
* * * *
76975617 TCACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * ** *
76975657 ACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
76975697 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
76975737 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* ** * * *
76975777 GTAACTTGCACCAATGC-CTTC-GGATCTTAGTCCGGATATGG
1 -TCACCAGCACGAATGCTCTTCGGGA-CTTAGCCCGGATAT-A
* *
76975818 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGA
76975853 CATCATTCGA
Statistics
Matches: 161, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.02
40 137 0.85
41 21 0.13
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:76975767 original size:80 final size:81
Alignment explanation
Indices: 76975632--76975852 Score: 234
Period size: 80 Copynumber: 2.8 Consensus size: 81
76975622 AGCATGATTA
* * * * * * ** *
76975632 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
76975697 -TCACTAGCACGAATG
66 GTAACTAGCACCAATG
*
76975712 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
*
76975777 GTAACTTGCACCAATG
66 GTAACTAGCACCAATG
* * ** *
76975793 C-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGAACTTAGCCCGGATA-CATCAC-TAGCACGAATGCTCTTCGGGACTTAGCCCGGA
76975853 CATCATTCGA
Statistics
Matches: 120, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
80 93 0.77
81 21 0.17
82 6 0.05
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
GTAACTAGCACCAATG
Found at i:76976197 original size:29 final size:29
Alignment explanation
Indices: 76976158--76976236 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
76976148 CTTAATAATC
*
76976158 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
76976188 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
76976217 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
76976237 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:76976279 original size:43 final size:43
Alignment explanation
Indices: 76976218--76976320 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
76976208 TGCATTTCAA
76976218 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
76976261 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
76976304 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
76976321 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:76978233 original size:37 final size:37
Alignment explanation
Indices: 76978183--76978261 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
76978173 TTATTACGAA
* * *
76978183 GTCTTACCCGGACATAA-TCTCCACATGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
76978220 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
76978257 GTCTT
1 GTCTT
76978262 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:76978458 original size:47 final size:47
Alignment explanation
Indices: 76978380--76978761 Score: 593
Period size: 47 Copynumber: 8.1 Consensus size: 47
76978370 CCCTTCGGGA
* * * * * * *
76978380 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*** *
76978427 CCCGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76978474 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
76978521 CTTATTACATATATACACTTTCACATTCATCACATTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76978568 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76978615 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76978662 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
76978711 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76978758 CTTA
1 CTTA
76978762 CTATCATTTC
Statistics
Matches: 310, Mismatches: 23, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
47 264 0.85
49 46 0.15
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76981553 original size:31 final size:31
Alignment explanation
Indices: 76981510--76981588 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
76981500 TTTAACAGTT
*
76981510 ACTGGGCTGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
76981541 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
76981572 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
76981589 ACTATAAACG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:76981877 original size:26 final size:26
Alignment explanation
Indices: 76981794--76981929 Score: 190
Period size: 26 Copynumber: 5.3 Consensus size: 26
76981784 CTGGAGGCCT
76981794 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
** *
76981818 AGCCCTTTTCGGTAAACTGGGGTA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
76981843 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
76981869 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
76981895 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
76981921 AGCCCTTTT
1 AGCCCTTTT
76981930 GCACTTCCTC
Statistics
Matches: 99, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 31 0.31
26 58 0.59
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:76981916 original size:52 final size:51
Alignment explanation
Indices: 76981794--76981929 Score: 224
Period size: 52 Copynumber: 2.7 Consensus size: 51
76981784 CTGGAGGCCT
*
76981794 AGCCTCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGTAA
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
76981843 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-A
76981895 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
76981930 GCACTTCCTC
Statistics
Matches: 82, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
48 5 0.06
49 7 0.09
50 10 0.12
51 24 0.29
52 36 0.44
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (51 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
Found at i:76982758 original size:27 final size:27
Alignment explanation
Indices: 76982728--76982806 Score: 99
Period size: 27 Copynumber: 2.9 Consensus size: 27
76982718 GGGCACATTC
*
76982728 GTCATTTTACCATACAGGGG-TATTACG
1 GTCATTTTACCCTACAGGGGCT-TTACG
*
76982755 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCCTACAGGGGCTTTACG
*
76982782 GTC-TCTTTACCCTACAGGTGCTTTA
1 GTCAT-TTTACCCTACAGGGGCTTTA
76982807 AAGTCTTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
27 45 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCTTTACG
Found at i:76982812 original size:27 final size:27
Alignment explanation
Indices: 76982733--76982819 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
76982723 CATTCGTCAT
* ** *
76982733 TTTACCATACAGGGG-TATTACGGTCAC
1 TTTACCCTACAGGGGCT-TTAAAGTCTC
**
76982760 TTTACCCTACAGGGGCTTTACGGTCTC
1 TTTACCCTACAGGGGCTTTAAAGTCTC
* *
76982787 TTTACCCTACAGGTGCTTTAAAGTCTT
1 TTTACCCTACAGGGGCTTTAAAGTCTC
76982814 TTTACC
1 TTTACC
76982820 TAATAGGGGT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (27 bp):
TTTACCCTACAGGGGCTTTAAAGTCTC
Found at i:76982977 original size:27 final size:25
Alignment explanation
Indices: 76982936--76983209 Score: 194
Period size: 27 Copynumber: 10.2 Consensus size: 25
76982926 TAGAAAGTCA
*
76982936 AGGGTACTTTT-GTAACTTTGTAAATCA
1 AGGGTA-TTTTGGTAA-TTT-TAAATCG
*
76982963 AGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTT--AAATCG
* *
76982990 AGGGTATTTTGGTAATTTTACAAACC
1 AGGGTATTTTGGTAATTTTA-AATCG
* *
76983016 AGTGGTATTTTGGTAATTTTACAAACT
1 AG-GGTATTTTGGTAATTTTA-AATCG
*
76983043 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTT--AAATCG
* * * *
76983071 AGGGTATTTCGATAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTT--AAATCG
* * *
76983098 AGGGTATTTTAGCAATTTTACAGA-CT
1 AGGGTATTTTGGTAATTTTA-A-ATCG
*
76983124 AGGGTATTTTGGTAATTTTACTGATCG
1 AGGGTATTTTGGTAATTTTA--AATCG
76983151 AGGGTATTTTGGTAATTTTCTAAA-CTG
1 AGGGTATTTTGGTAA-TTT-TAAATC-G
*
76983178 AGGGTATTTTAGTAATTTTTAAATCG
1 AGGGTATTTTGGTAA-TTTTAAATCG
76983204 AGGGTA
1 AGGGTA
76983210 AAACAGTAAT
Statistics
Matches: 205, Mismatches: 26, Indels: 33
0.78 0.10 0.12
Matches are distributed among these distances:
25 3 0.01
26 44 0.21
27 148 0.72
28 7 0.03
29 3 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (25 bp):
AGGGTATTTTGGTAATTTTAAATCG
Found at i:76983026 original size:54 final size:53
Alignment explanation
Indices: 76982963--76983209 Score: 284
Period size: 54 Copynumber: 4.6 Consensus size: 53
76982953 TTGTAAATCA
* *
76982963 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACC
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACG
* *
76983016 AGTGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAATTG
1 AG-GGTATTTTGGTAATTTTACAAATCGA-GGGTATTTTGGTAATTTTACAAA-CG
* * * * * * * *
76983071 AGGGTATTTCGATAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAGACT
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACG
**
76983124 AGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTT-CTAAACTG
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTAC-AAAC-G
* *
76983178 AGGGTATTTTAGTAATTTT-TAAATCGAGGGTA
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTA
76983210 AAACAGTAAT
Statistics
Matches: 162, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
52 1 0.01
53 54 0.33
54 103 0.64
55 4 0.02
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACG
Found at i:76983058 original size:81 final size:79
Alignment explanation
Indices: 76982963--76983196 Score: 335
Period size: 81 Copynumber: 2.9 Consensus size: 79
76982953 TTGTAAATCA
*
76982963 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACCAGTGGTATTTTG
1 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACCAG-GGTATTTTA
76983028 GTAATTTTACAAACT
65 GTAATTTTACAAACT
* *
76983043 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAACCAAGGGTATTTT
1 A-GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACC-AGGGTATTTT
* *
76983108 AGCAATTTTACAGACT
64 AGTAATTTTACAAACT
** * *
76983124 AGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTT-CTAAACTGAGGGTATTTT
1 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTAC-AAAC-CAGGGTATTTT
76983188 AGTAATTTT
64 AGTAATTTT
76983197 TAAATCGAGG
Statistics
Matches: 138, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
79 1 0.01
80 63 0.46
81 72 0.52
82 2 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (79 bp):
AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACCAGGGTATTTTAG
TAATTTTACAAACT
Found at i:76983314 original size:27 final size:27
Alignment explanation
Indices: 76983188--76983317 Score: 172
Period size: 27 Copynumber: 4.9 Consensus size: 27
76983178 AGGGTATTTT
*
76983188 AGTAATT-TTTAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* *
76983214 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
76983241 AGTAATTCTATAAATCGAAGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* * *
76983268 GGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* *
76983295 GGTAATTCTATAAATTGAGGGTA
1 AGTAATTCTATAAATCGAGGGTA
76983318 CTTTGGTAAT
Statistics
Matches: 91, Mismatches: 12, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
26 7 0.08
27 84 0.92
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
AGTAATTCTATAAATCGAGGGTAAAAC
Found at i:76983354 original size:81 final size:81
Alignment explanation
Indices: 76983180--76983362 Score: 179
Period size: 81 Copynumber: 2.3 Consensus size: 81
76983170 CTAAACTGAG
* *
76983180 GGTATTTTAGTAATTTT-TAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGT
1 GGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGT
* *
76983244 AATTCTATAAATCGAA
66 AATTCTACAAATCAAA
*** * * ** *****
76983260 GGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTACTTTGGT
1 GGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGT
* * *
76983325 AATTTTACAATTTAAA
66 AATTCTACAAATCAAA
*
76983341 GGTATTTCAGTAATTTGGTAAA
1 GGTATTTCAGTAATTTTGTAAA
76983363 CTAAAGTATT
Statistics
Matches: 78, Mismatches: 24, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
80 12 0.15
81 66 0.85
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.34
Consensus pattern (81 bp):
GGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGT
AATTCTACAAATCAAA
Found at i:76985309 original size:44 final size:43
Alignment explanation
Indices: 76985165--76985323 Score: 155
Period size: 44 Copynumber: 3.7 Consensus size: 43
76985155 AGCTCTTACA
* * * *
76985165 ATGCCAACGTCCCAAACGTGGTCTT--ACATGAAATCAAATATTG
1 ATGCCAATGTCCCAGACATGGTCTTACACAT-AAATCAAA-ATCG
* * * * * *
76985208 ATGCCACTGTCCCAGACAGGGCCTTACAC-GAGATC-ATATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAAATCAAAAT-CG
76985250 ATGCCAATGTCCCAGACATGGTCTTACACATAAATCACAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAAATCA-AAATCG
*
76985294 ATGCCAATGTCCCAGACGTGGTCTTACACA
1 ATGCCAATGTCCCAGACATGGTCTTACACA
76985324 ATAACACATC
Statistics
Matches: 93, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
41 2 0.02
42 28 0.30
43 27 0.29
44 31 0.33
45 5 0.05
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACATAAATCAAAATCG
Found at i:76985348 original size:44 final size:44
Alignment explanation
Indices: 76985165--76985323 Score: 157
Period size: 43 Copynumber: 3.7 Consensus size: 44
76985155 AGCTCTTACA
* * * *
76985165 ATGCCAACGTCCCAAACGTGGTCTT--ACATGAAATCA-AATATTG
1 ATGCCAATGTCCCAGACATGGTCTTACACAT-AAATCACAA-ATCG
* * * * * * *
76985208 ATGCCACTGTCCCAGACAGGGCCTTACAC-GAGATCATATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAAATCACAAATCG
76985250 ATGCCAATGTCCCAGACATGGTCTTACACATAAATCACAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAAATCACAAATCG
*
76985294 ATGCCAATGTCCCAGACGTGGTCTTACACA
1 ATGCCAATGTCCCAGACATGGTCTTACACA
76985324 ATAACACATC
Statistics
Matches: 93, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
42 27 0.29
43 32 0.34
44 32 0.34
45 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.23
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACACATAAATCACAAATCG
Found at i:76987403 original size:41 final size:41
Alignment explanation
Indices: 76987337--76987495 Score: 214
Period size: 41 Copynumber: 3.9 Consensus size: 41
76987327 TACACAGCTG
** *
76987337 AAGCTATCTC-AAATCGCACACTAAGTGCCATATATTGCCA
1 AAGCTATCTCGATCTCGCACACTAAGTGCCATATATAGCCA
76987377 AAGCTATCTCGATCTCGCACACTAAGTGCCATATATAGCCA
1 AAGCTATCTCGATCTCGCACACTAAGTGCCATATATAGCCA
* * ***
76987418 AAGCTATCTCGATCTCGTACACTAAGTGCCACATATAGTGG
1 AAGCTATCTCGATCTCGCACACTAAGTGCCATATATAGCCA
* *
76987459 AAGCTATGTCGA-GTCGCACACTAAGTGCCATATATAG
1 AAGCTATCTCGATCTCGCACACTAAGTGCCATATATAG
76987496 TTGATTTGTC
Statistics
Matches: 106, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 32 0.30
41 74 0.70
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (41 bp):
AAGCTATCTCGATCTCGCACACTAAGTGCCATATATAGCCA
Found at i:76987476 original size:81 final size:81
Alignment explanation
Indices: 76987337--76987495 Score: 212
Period size: 81 Copynumber: 2.0 Consensus size: 81
76987327 TACACAGCTG
* *
76987337 AAGCTATCTCAAATCGCACACTAAGTGCCATATATTGCCAAAGCTATCTCGATCTCGCACACTAA
1 AAGCTATCTCAAATCGCACACTAAGTGCCACATATAGCCAAAGCTATCTCGATCTCGCACACTAA
76987402 GTGCCATATATAGCCA
66 GTGCCATATATAGCCA
** * *** * *
76987418 AAGCTATCTCGATCTCGTACACTAAGTGCCACATATAGTGGAAGCTATGTCGA-GTCGCACACTA
1 AAGCTATCTC-AAATCGCACACTAAGTGCCACATATAGCCAAAGCTATCTCGATCTCGCACACTA
76987482 AGTGCCATATATAG
65 AGTGCCATATATAG
76987496 TTGATTTGTC
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
81 34 0.51
82 33 0.49
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (81 bp):
AAGCTATCTCAAATCGCACACTAAGTGCCACATATAGCCAAAGCTATCTCGATCTCGCACACTAA
GTGCCATATATAGCCA
Found at i:76992015 original size:7 final size:7
Alignment explanation
Indices: 76992003--76992028 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
76991993 ACATTTCTAC
76992003 TCATCCA
1 TCATCCA
76992010 TCATCCA
1 TCATCCA
76992017 TCATCCA
1 TCATCCA
76992024 TCATC
1 TCATC
76992029 ATTCTCTCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.42, G:0.00, T:0.31
Consensus pattern (7 bp):
TCATCCA
Found at i:76993544 original size:22 final size:22
Alignment explanation
Indices: 76993516--76993558 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
76993506 CACTAAGTCA
* * *
76993516 ACAGAACGGCTTAATGCCGTAG
1 ACAGAACAGCTAAAGGCCGTAG
76993538 ACAGAACAGCTAAAGGCCGTA
1 ACAGAACAGCTAAAGGCCGTA
76993559 AATATTACAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.37, C:0.23, G:0.26, T:0.14
Consensus pattern (22 bp):
ACAGAACAGCTAAAGGCCGTAG
Found at i:76993843 original size:27 final size:27
Alignment explanation
Indices: 76993793--76993853 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
76993783 CGCATAATCG
* * *
76993793 TCATTTTACCATACAGGGGTATTACGA
1 TCATTTTACCATAAAAGGGCATTACGA
*
76993820 TCATTTTACCCTAAAAGGGCATTACGA
1 TCATTTTACCATAAAAGGGCATTACGA
76993847 TCATTTT
1 TCATTTT
76993854 CCAAACCGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATAAAAGGGCATTACGA
Found at i:76994116 original size:19 final size:19
Alignment explanation
Indices: 76994081--76994118 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
76994071 GCATGGGGCC
*
76994081 CACGAGCCCATTGGGCCCA
1 CACGAGCCCATTAGGCCCA
76994100 CACG-GCCCATTAAGGCCCA
1 CACGAGCCCATT-AGGCCCA
76994119 AAACAACCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.24, C:0.42, G:0.24, T:0.11
Consensus pattern (19 bp):
CACGAGCCCATTAGGCCCA
Found at i:77001393 original size:38 final size:38
Alignment explanation
Indices: 77001345--77001622 Score: 403
Period size: 38 Copynumber: 7.3 Consensus size: 38
77001335 GGCACGAAGG
* * * *
77001345 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
77001383 CCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** *
77001421 CCCGGATATTTTACCAGCACGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA
*
77001460 GCCTGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 -CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
77001499 CCCGGATATGATACCAGCACGAAGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
77001537 CCCGGATATATTACCAGCACGAAGCTTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
77001575 CCCGGATATAATACCAGCACGAAGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
77001613 TCCGGATATA
1 CCCGGATATA
77001623 CATCGAATAT
Statistics
Matches: 214, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
38 175 0.82
39 10 0.05
40 29 0.14
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:77001554 original size:116 final size:114
Alignment explanation
Indices: 77001345--77001622 Score: 421
Period size: 116 Copynumber: 2.4 Consensus size: 114
77001335 GGCACGAAGG
* * * * *
77001345 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTATCCCAGATATAATACCAGCACGAAGCCT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
* *
77001410 GCGGGATTTAACCCGGATATTTTACCAGCACGAAGCCTGCGGGTCTTTAA
66 GCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGG-ATTTAA
* *
77001460 GCCTGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATGATACCAGCACGAAGCC
1 -CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
* *
77001525 TGTGGGATTTAACCCGGATATATTACCAGCACGAAGCTTGCGGGATTTAA
65 TGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* *
77001575 CCCGGATATAATACCAGCACGAAGCCTGTGGGATTTAATCCGGATATA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
77001623 CATCGAATAT
Statistics
Matches: 147, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
114 44 0.30
115 5 0.03
116 98 0.67
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.22
Consensus pattern (114 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
GCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
Found at i:77006849 original size:46 final size:47
Alignment explanation
Indices: 77006669--77006848 Score: 185
Period size: 46 Copynumber: 3.9 Consensus size: 47
77006659 TTTGTGTGCT
* * * *
77006669 AGTGTAAGACATGTCTAGGACATGAATCAG-CCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGACTACGA-GATGAGAGCC
* * *
77006715 AATGTAAGACCATGTCTGGGACATGGCATC-GAC-ATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGACTA-CGAGATGAGAGCC
* *
77006763 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGACTACGAGATG-AGAGCC
77006809 AGTGTAAGACATGTCTGGGACATGCATCAG-CTACGAGATG
1 AGTGTAAGACATGTCTGGGACATGCATCAGACTACGAGATG
77006849 TGTCAGTTCA
Statistics
Matches: 114, Mismatches: 11, Indels: 18
0.80 0.08 0.13
Matches are distributed among these distances:
45 2 0.02
46 58 0.51
47 32 0.28
48 21 0.18
49 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGACTACGAGATGAGAGCC
Found at i:77008137 original size:15 final size:15
Alignment explanation
Indices: 77008117--77008146 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
77008107 TTGTGCTTAG
77008117 GCTATGTGAACCACA
1 GCTATGTGAACCACA
77008132 GCTATGTGAACCACA
1 GCTATGTGAACCACA
77008147 CAGGCCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (15 bp):
GCTATGTGAACCACA
Found at i:77015350 original size:38 final size:38
Alignment explanation
Indices: 77015274--77015431 Score: 226
Period size: 38 Copynumber: 4.1 Consensus size: 38
77015264 TCCAGTCACT
* * *
77015274 AGCACAAAACCTGCGGGACTTTAAGCTCGAATATAATACC
1 AGCACGAAGCCTGCGGGA-TTTAA-CTCGGATATAATACC
* *
77015314 AGTACTAAGCCTGCGGGATTTAACTCGGATATAATACC
1 AGCACGAAGCCTGCGGGATTTAACTCGGATATAATACC
* *
77015352 AGCACGAAGCCTGCGGGATTTAACGCGGCTATAATACC
1 AGCACGAAGCCTGCGGGATTTAACTCGGATATAATACC
*
77015390 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATACC
1 AGCACGAAGCCTGCGGGATTTAACTCGGATATAATACC
77015428 AGCA
1 AGCA
77015432 TATAGCCTGC
Statistics
Matches: 108, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 88 0.81
39 5 0.05
40 15 0.14
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.20
Consensus pattern (38 bp):
AGCACGAAGCCTGCGGGATTTAACTCGGATATAATACC
Found at i:77021979 original size:41 final size:40
Alignment explanation
Indices: 77021852--77021994 Score: 189
Period size: 40 Copynumber: 3.5 Consensus size: 40
77021842 CTCGCACAAG
* * * *
77021852 GCCTTCGGGTCTTAACCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATGTAGTCACTAGCACAAAT
*
77021892 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATGTAGTCACTAGCACAAAT
* * *
77021932 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATGTAGTCAC-TAGCACAAAT
77021973 GCCTTCGGGACTTAGCCCGGAT
1 GCCTTCGGGACTTAGCCCGGAT
77021995 ATCATTCGAG
Statistics
Matches: 90, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 26 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATGTAGTCACTAGCACAAAT
Found at i:77021988 original size:81 final size:79
Alignment explanation
Indices: 77021816--77021996 Score: 220
Period size: 81 Copynumber: 2.3 Consensus size: 79
77021806 AATCAAGCAT
** * * *
77021816 CTTCGGGGTTTAG-CCGGATATAACCACTCGCACAAGGCCTTCGGGTCTTAACCCGGATGTGGTC
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAACCCGGATGTAGTC
* *
77021880 ACTAGCATAAATGC
66 ACTAGCACAAAAGC
** * **
77021894 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGATCTTAGTCCGGATGTAGT
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCAC-AAGGCCTTCGGATCTTAACCCGGATGTAGT
*
77021959 CGCTTAGCACAAAAGC
65 CAC-TAGCACAAAAGC
77021975 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
77021997 CATTCGAGTA
Statistics
Matches: 87, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
78 11 0.13
79 17 0.20
80 27 0.31
81 32 0.37
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAACCCGGATGTAGTC
ACTAGCACAAAAGC
Found at i:77032357 original size:32 final size:36
Alignment explanation
Indices: 77032314--77032398 Score: 88
Period size: 32 Copynumber: 2.4 Consensus size: 36
77032304 TAAAAAAAAC
* *
77032314 TATATTTATATAAATA-ACTA-AATAT-T-TAATTT
1 TATATTAATATAAATATACTATAAAATGTATAATTT
77032346 TATATTAATATATTAATATACTATTAAAATGTATAATTT
1 TATATTAATATA--AATATACTA-TAAAATGTATAATTT
77032385 TAATATTAATATAA
1 T-ATATTAATATAA
77032399 TAAAATAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
32 11 0.26
34 4 0.09
35 4 0.09
37 4 0.09
38 2 0.05
39 7 0.16
40 11 0.26
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.48
Consensus pattern (36 bp):
TATATTAATATAAATATACTATAAAATGTATAATTT
Found at i:77032519 original size:21 final size:21
Alignment explanation
Indices: 77032494--77032536 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
77032484 AAATAATAAA
*
77032494 ATATATTTT-TTATTAATATTT
1 ATATATTTTATAATTAA-ATTT
77032515 ATATATTTTATAATTAAATTT
1 ATATATTTTATAATTAAATTT
77032536 A
1 A
77032537 AATAAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATATATTTTATAATTAAATTT
Found at i:77033389 original size:43 final size:43
Alignment explanation
Indices: 77033326--77033412 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
77033316 TGAAAAGTAG
*
77033326 ACTAACTAAATTCCTGAAAATAAAATAAGGAAACTAAATTTCA
1 ACTAACTAAATTCCTAAAAATAAAATAAGGAAACTAAATTTCA
*
77033369 ACTAACTAAATTCCTAAAAATAATATAAGGAAACTAAATTTCA
1 ACTAACTAAATTCCTAAAAATAAAATAAGGAAACTAAATTTCA
77033412 A
1 A
77033413 AGGTATGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.54, C:0.14, G:0.06, T:0.26
Consensus pattern (43 bp):
ACTAACTAAATTCCTAAAAATAAAATAAGGAAACTAAATTTCA
Found at i:77037491 original size:15 final size:15
Alignment explanation
Indices: 77037467--77037496 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
77037457 CTAATGTATT
77037467 TTTTGAGGTTTCGGC
1 TTTTGAGGTTTCGGC
*
77037482 TTTTGTGGTTTCGGC
1 TTTTGAGGTTTCGGC
77037497 ACAAGTGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.13, G:0.33, T:0.50
Consensus pattern (15 bp):
TTTTGAGGTTTCGGC
Found at i:77052255 original size:29 final size:28
Alignment explanation
Indices: 77052162--77052260 Score: 110
Period size: 27 Copynumber: 3.5 Consensus size: 28
77052152 TATATTAAGT
* *
77052162 CCGCACACTCAGTGCTATATAATC-AAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* *
77052189 TCGCACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTATACAATCAAAC
** * *
77052217 TTGCACACTTAGTGCTGTACAATTTAAAC
1 CCGCACACTTAGTGCTATACAA-TCAAAC
77052246 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
77052261 CAATCTCATG
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 22 0.35
28 22 0.35
29 18 0.29
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.27
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATACAATCAAAC
Found at i:77052728 original size:12 final size:12
Alignment explanation
Indices: 77052711--77052737 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
77052701 TGGGCATACT
77052711 TATGTATATATA
1 TATGTATATATA
77052723 TATGTATATATA
1 TATGTATATATA
77052735 TAT
1 TAT
77052738 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:77060146 original size:27 final size:26
Alignment explanation
Indices: 77060129--77060198 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
77060119 ATATTAAGTC
77060129 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
77060156 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
77060184 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
77060199 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:77060192 original size:28 final size:28
Alignment explanation
Indices: 77060129--77060226 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
77060119 ATATTAAGTC
*
77060129 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
77060156 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
77060184 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
77060213 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77060227 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:77060692 original size:12 final size:12
Alignment explanation
Indices: 77060675--77060701 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
77060665 TGGGCATACT
77060675 TATGTATATATA
1 TATGTATATATA
77060687 TATGTATATATA
1 TATGTATATATA
77060699 TAT
1 TAT
77060702 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:77065353 original size:22 final size:22
Alignment explanation
Indices: 77065325--77065368 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
77065315 ATAGCTGGGA
77065325 ATAGAGAGAAGAACCAACTATG
1 ATAGAGAGAAGAACCAACTATG
77065347 ATAGAGAGAAGAACCAACTATG
1 ATAGAGAGAAGAACCAACTATG
77065369 CTAAAGTGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.14, G:0.23, T:0.14
Consensus pattern (22 bp):
ATAGAGAGAAGAACCAACTATG
Found at i:77066089 original size:35 final size:32
Alignment explanation
Indices: 77066049--77066115 Score: 80
Period size: 35 Copynumber: 2.0 Consensus size: 32
77066039 CAATCAGTAA
*
77066049 TATTCATTAACAATCAGCTAATCAGAACAATTATT
1 TATTCAATAACAATCAG-TAA-CA-AACAATTATT
* *
77066084 TATTCAATAACAGTCAGTAACAATCAATTATT
1 TATTCAATAACAATCAGTAACAAACAATTATT
77066116 CAATAATAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
32 9 0.31
33 2 0.07
34 3 0.10
35 15 0.52
ACGTcount: A:0.43, C:0.16, G:0.06, T:0.34
Consensus pattern (32 bp):
TATTCAATAACAATCAGTAACAAACAATTATT
Found at i:77066148 original size:18 final size:18
Alignment explanation
Indices: 77066097--77066148 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
77066087 TCAATAACAG
* *
77066097 TCAGTAACAATCAATTAT
1 TCAGTATCAATCAGTTAT
* *
77066115 TCAATAAT-AATTAGTTAT
1 TCAGT-ATCAATCAGTTAT
77066133 TCAGTATCAATCAGTT
1 TCAGTATCAATCAGTT
77066149 GATCGGTTAT
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
17 2 0.08
18 23 0.88
19 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.38
Consensus pattern (18 bp):
TCAGTATCAATCAGTTAT
Found at i:77066499 original size:51 final size:51
Alignment explanation
Indices: 77066386--77066500 Score: 187
Period size: 51 Copynumber: 2.3 Consensus size: 51
77066376 AAATCTGAAA
*
77066386 CAGTAACAGTAACGGTAACAGTAACAATATTCGGCACACAAAGTGCCAAAT
1 CAGTAACAGTAACGGTAACAGTAACAATATCCGGCACACAAAGTGCCAAAT
* *
77066437 C-GATAATAGTAACGGTAACAGTAACAATATCCGGCACACAAAGTGCCGAAT
1 CAG-TAACAGTAACGGTAACAGTAACAATATCCGGCACACAAAGTGCCAAAT
77066488 CAGTAACAGTAAC
1 CAGTAACAGTAAC
77066501 CATATTCTGC
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
50 1 0.02
51 56 0.97
52 1 0.02
ACGTcount: A:0.43, C:0.22, G:0.18, T:0.17
Consensus pattern (51 bp):
CAGTAACAGTAACGGTAACAGTAACAATATCCGGCACACAAAGTGCCAAAT
Found at i:77067965 original size:13 final size:12
Alignment explanation
Indices: 77067933--77067966 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
77067923 TTTATATATA
77067933 TATATAATAACT
1 TATATAATAACT
77067945 TA-ATAATATACT
1 TATATAATA-ACT
77067957 TATATAATAA
1 TATATAATAA
77067967 GTAAATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (12 bp):
TATATAATAACT
Found at i:77068248 original size:16 final size:17
Alignment explanation
Indices: 77068221--77068259 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
77068211 AATTTATTTT
77068221 ATAATATAATAATAATA
1 ATAATATAATAATAATA
*
77068238 ATAAT-TAATAATTATA
1 ATAATATAATAATAATA
*
77068254 ACAATA
1 ATAATA
77068260 ATTTATTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (17 bp):
ATAATATAATAATAATA
Found at i:77068254 original size:19 final size:19
Alignment explanation
Indices: 77068226--77068262 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
77068216 ATTTTATAAT
*
77068226 ATAATAATAATAATAATTA
1 ATAATAATAACAATAATTA
*
77068245 ATAATTATAACAATAATT
1 ATAATAATAACAATAATT
77068263 TATTATTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
ATAATAATAACAATAATTA
Found at i:77075108 original size:97 final size:97
Alignment explanation
Indices: 77074954--77075146 Score: 368
Period size: 97 Copynumber: 2.0 Consensus size: 97
77074944 GCTTTCTTTA
77074954 TTTCTTCTATGTCCTCATCATTTGTATAGAGGCTAATAATATCCTCAAAACCAAAGATTCTTTGA
1 TTTCTTCTATGTCCTCATCATTTGTATAGAGGCTAATAATATCCTCAAAACCAAAGATTCTTTGA
*
77075019 AGTTCTTACCATTTGTGTAAAGGCTAACAATC
66 AGTTCTCACCATTTGTGTAAAGGCTAACAATC
*
77075051 TTTCTTCTATGTCCTCATCATTTGTATAGAGGCTAATAATATCCTTAAAACCAAAGATTCTTTGA
1 TTTCTTCTATGTCCTCATCATTTGTATAGAGGCTAATAATATCCTCAAAACCAAAGATTCTTTGA
77075116 AGTTCTCACCATTTGTGTAAAGGCTAACAAT
66 AGTTCTCACCATTTGTGTAAAGGCTAACAAT
77075147 TTCCTCAAAA
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
97 94 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.37
Consensus pattern (97 bp):
TTTCTTCTATGTCCTCATCATTTGTATAGAGGCTAATAATATCCTCAAAACCAAAGATTCTTTGA
AGTTCTCACCATTTGTGTAAAGGCTAACAATC
Done.