Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 233 of 344
Found at i:77076956 original size:37 final size:37
Alignment explanation
Indices: 77076906--77076980 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
77076896 AATGATAGGC
77076906 ACAAAAGACTTTAATTTGTGGTTTTGTTTATTTGTTT
1 ACAAAAGACTTTAATTTGTGGTTTTGTTTATTTGTTT
*
77076943 ACAAAAGTCTTTAATTTGTGGTTTTGTTTATTTGTTT
1 ACAAAAGACTTTAATTTGTGGTTTTGTTTATTTGTTT
77076980 A
1 A
77076981 TGGATTCCGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.05, G:0.16, T:0.55
Consensus pattern (37 bp):
ACAAAAGACTTTAATTTGTGGTTTTGTTTATTTGTTT
Found at i:77083953 original size:21 final size:18
Alignment explanation
Indices: 77083915--77083958 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 18
77083905 CATCAATTAC
77083915 TTTTTATTTTTATATATA
1 TTTTTATTTTTATATATA
77083933 TTTTTAATTTATTATTATATA
1 TTTTT-ATTT-TTA-TATATA
77083954 TTTTT
1 TTTTT
77083959 GAAAATATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.22
19 4 0.17
20 3 0.13
21 11 0.48
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTTTATTTTTATATATA
Found at i:77083970 original size:23 final size:22
Alignment explanation
Indices: 77083923--77083978 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 22
77083913 ACTTTTTATT
**
77083923 TTTA-TATATATTTTTAATTTA
1 TTTATTATATATTTTTAAAATA
77083944 -TTATTATATATTTTTGAAAATA
1 TTTATTATATATTTTT-AAAATA
77083966 TTTATT-TAT-TTTT
1 TTTATTATATATTTT
77083979 ATATATTTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
20 3 0.10
21 15 0.50
22 7 0.23
23 5 0.17
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (22 bp):
TTTATTATATATTTTTAAAATA
Found at i:77089946 original size:34 final size:34
Alignment explanation
Indices: 77089903--77089969 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
77089893 ATATCACTCC
77089903 AGGGGACATTCATTTTTGTTCTAGTATTGGTACT
1 AGGGGACATTCATTTTTGTTCTAGTATTGGTACT
77089937 AGGGGACATTCATTTTTGTTCTAGTATTGGTAC
1 AGGGGACATTCATTTTTGTTCTAGTATTGGTAC
77089970 GAATTGATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.21, C:0.12, G:0.24, T:0.43
Consensus pattern (34 bp):
AGGGGACATTCATTTTTGTTCTAGTATTGGTACT
Found at i:77093167 original size:39 final size:39
Alignment explanation
Indices: 77093071--77093168 Score: 160
Period size: 39 Copynumber: 2.5 Consensus size: 39
77093061 CCGTACATAT
* * *
77093071 TTCCAGCACGTAGCCTGCAGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
77093110 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
*
77093149 TTCCAGCATATAGCCTGCGG
1 TTCCAGCACATAGCCTGCGG
77093169 GTCTTTAAGC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
Found at i:77100174 original size:39 final size:39
Alignment explanation
Indices: 77100131--77100316 Score: 313
Period size: 39 Copynumber: 4.8 Consensus size: 39
77100121 ATGAAAGACA
*
77100131 CTGGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
77100170 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
77100209 CTGGAAATGTATCCGGG--AAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
77100246 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
77100285 CAGGAAATGTATCCGGGCTAAAGTTCCGCAGG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGG
77100317 TTTTGTGGTG
Statistics
Matches: 138, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
37 37 0.27
39 101 0.73
ACGTcount: A:0.23, C:0.24, G:0.31, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:77100246 original size:76 final size:76
Alignment explanation
Indices: 77100131--77100316 Score: 291
Period size: 76 Copynumber: 2.4 Consensus size: 76
77100121 ATGAAAGACA
* *
77100131 CTGGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCTGGGCTAAAGTCC
1 CTGGAAATGTATCC-GG-GAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
77100196 CGCAGGCTTCGTG
64 CGCAGGCTTCGTG
77100209 CTGGAAATGTATCCGGGAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCG
1 CTGGAAATGTATCCGGGAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCG
*
77100274 TAGGCTTCGTG
66 CAGGCTTCGTG
* *
77100285 CAGGAAATGTATCCGGGCTAAAGTTCCGCAGG
1 CTGGAAATGTATCCGGG--AAAGTCCCGCAGG
77100317 TTTTGTGGTG
Statistics
Matches: 101, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
76 73 0.72
77 2 0.02
78 26 0.26
ACGTcount: A:0.23, C:0.24, G:0.31, T:0.23
Consensus pattern (76 bp):
CTGGAAATGTATCCGGGAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCG
CAGGCTTCGTG
Found at i:77104464 original size:51 final size:51
Alignment explanation
Indices: 77104382--77104493 Score: 170
Period size: 51 Copynumber: 2.2 Consensus size: 51
77104372 CTCAAATTTA
* * * *
77104382 CTTCATACTTCATCTGGAATTATTGCCTTGTTGTTCTAACTTCAACAAGAG
1 CTTCATATTTCATCTGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
* *
77104433 CTTCATATTTCATCTGGAATAATTACTTTGTTGCTCTAGCTTCAACAAGAG
1 CTTCATATTTCATCTGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
77104484 CTTCATATTT
1 CTTCATATTT
77104494 TATCCGGATA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.41
Consensus pattern (51 bp):
CTTCATATTTCATCTGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
Found at i:77106048 original size:30 final size:31
Alignment explanation
Indices: 77105996--77106054 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
77105986 CACCCTTAAA
* * *
77105996 ATATTTGCACTATTAGTCCTTCAACTTTTTC
1 ATATTTACACTATTAGCCCTTCAAATTTTTC
77106027 ATATTTACACT-TTAGCCCTTCAAATTTT
1 ATATTTACACTATTAGCCCTTCAAATTTT
77106055 GAGTATTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.25, C:0.22, G:0.05, T:0.47
Consensus pattern (31 bp):
ATATTTACACTATTAGCCCTTCAAATTTTTC
Found at i:77106062 original size:30 final size:31
Alignment explanation
Indices: 77105996--77106063 Score: 77
Period size: 30 Copynumber: 2.2 Consensus size: 31
77105986 CACCCTTAAA
* * *
77105996 ATATTTGCACTATTAGTCCTTCAACTTTTTC
1 ATATTTACACTATTAGCCCTTCAACATTTTC
*
77106027 ATATTTACACT-TTAGCCCTTCAA-ATTTTG
1 ATATTTACACTATTAGCCCTTCAACATTTTC
77106056 AGTATTTA
1 A-TATTTA
77106064 TTCTTGTGCA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 5 0.16
30 17 0.53
31 10 0.31
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.47
Consensus pattern (31 bp):
ATATTTACACTATTAGCCCTTCAACATTTTC
Found at i:77112845 original size:48 final size:48
Alignment explanation
Indices: 77112727--77112849 Score: 125
Period size: 43 Copynumber: 2.7 Consensus size: 48
77112717 CCATGTAAGA
* * *
77112727 TGGCATTGATATGTGATCCCATGTAAGGCCATGTCTAGGACATTGAGT
1 TGGCATCGATATGTGATCCCATGTAAGACCATGTCTAGGACATGGAGT
* * *
77112775 T-G-A-C-AT-TGAT-ATCCCATATAAGACCATGTTTGGGACATGGCA-T
1 TGGCATCGATATG-TGATCCCATGTAAGACCATGTCTAGGACATGG-AGT
77112818 TGGCATCGATATGTGATCCCATGTAAGACCAT
1 TGGCATCGATATGTGATCCCATGTAAGACCAT
77112850 ATCCAGGATA
Statistics
Matches: 60, Mismatches: 7, Indels: 16
0.72 0.08 0.19
Matches are distributed among these distances:
43 29 0.48
44 5 0.08
45 1 0.02
46 2 0.03
47 4 0.07
48 19 0.32
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (48 bp):
TGGCATCGATATGTGATCCCATGTAAGACCATGTCTAGGACATGGAGT
Found at i:77113925 original size:43 final size:43
Alignment explanation
Indices: 77113872--77113979 Score: 164
Period size: 43 Copynumber: 2.5 Consensus size: 43
77113862 AGGGCACGAC
*
77113872 CATGCGTCTCAGCCGTGTGAAGGACACAGCCTTAGAACATGGG
1 CATGTGTCTCAGCCGTGTGAAGGACACAGCCTTAGAACATGGG
* *
77113915 CATGTGTCTCAACCATGTGAAGGACACAGCCTTAGAACATGGG
1 CATGTGTCTCAGCCGTGTGAAGGACACAGCCTTAGAACATGGG
*
77113958 CATGT-ACTCAGGCCGTGTGAAG
1 CATGTGTCTCA-GCCGTGTGAAG
77113980 TCTGCACTTA
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 4 0.07
43 54 0.93
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (43 bp):
CATGTGTCTCAGCCGTGTGAAGGACACAGCCTTAGAACATGGG
Found at i:77117390 original size:39 final size:39
Alignment explanation
Indices: 77117341--77117463 Score: 140
Period size: 39 Copynumber: 3.1 Consensus size: 39
77117331 ACATTGTAAC
*
77117341 ATATGCTTGAACGTTATGTAATTATATGAGTATTGTGAT
1 ATATGCTTGAACGTTATGTGATTATATGAGTATTGTGAT
* *
77117380 ATATGTTTGAATC-TTATGTGATTATATGAGTATTCTGAT
1 ATATGCTTGAA-CGTTATGTGATTATATGAGTATTGTGAT
* * * * * *
77117419 ACATGCTTAAATGTTATATGATTATATGTGTAGTGTGATT
1 ATATGCTTGAACGTTATGTGATTATATGAGTATTGTGA-T
77117459 ATATG
1 ATATG
77117464 TGTAATGTGA
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
39 63 0.91
40 6 0.09
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.46
Consensus pattern (39 bp):
ATATGCTTGAACGTTATGTGATTATATGAGTATTGTGAT
Found at i:77117459 original size:17 final size:17
Alignment explanation
Indices: 77117437--77117479 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
77117427 AAATGTTATA
*
77117437 TGATTATATGTGTAGTG
1 TGATTATATGTGTAATG
77117454 TGATTATATGTGTAATG
1 TGATTATATGTGTAATG
77117471 TGA-TATATG
1 TGATTATATG
77117480 CCCAAAAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
16 6 0.24
17 19 0.76
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.47
Consensus pattern (17 bp):
TGATTATATGTGTAATG
Found at i:77138825 original size:16 final size:17
Alignment explanation
Indices: 77138790--77138830 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
77138780 AAGTAATTTC
*
77138790 AAAATATAAATAAAGATA
1 AAAATA-AAAAAAAGATA
77138808 AAAATAAAAAAAAG-TA
1 AAAATAAAAAAAAGATA
77138824 AAAATAA
1 AAAATAA
77138831 CTAATAGGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.41
17 7 0.32
18 6 0.27
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (17 bp):
AAAATAAAAAAAAGATA
Found at i:77169955 original size:75 final size:74
Alignment explanation
Indices: 77169808--77170137 Score: 315
Period size: 75 Copynumber: 4.5 Consensus size: 74
77169798 AACGCAATCA
*
77169808 CTATTGTATTTTACATCAAT-AATATACTTATTTACAATCTATGAAAACAA-TAGAAAAATTATT
1 CTATTGTATTTTATATCAATAAATATACTTATTTACAATCTATGAAAA-AATTA-AAAAATTATT
77169871 TGTATTGTATT
64 TGTATTGTATT
* * * * * *
77169882 CTATTGTAATTTATATCAATAACATTTATTTATTTACAATATATGAAAAAATTTAAAAATTTTTT
1 CTATTGTATTTTATATCAATAA-ATATACTTATTTACAATCTATGAAAAAATTAAAAAATTATTT
77169947 GTATTGTATT
65 GTATTGTATT
* *
77169957 TTATTGTATTTTATATCAATAATATATACTTATTTACAATCTA-AAAATAAATTAAAAAATTATT
1 CTATTGTATTTTATATCAATAA-ATATACTTATTTACAATCTATGAAA-AAATTAAAAAATTATT
*
77170021 TGTATTATATT
64 TGTATTGTATT
*** * ** * *
77170032 CTATTGTA-TGCCT-TCTAAT-AATATATTTATTTACAA-C-AT--ACGAA--AAAAATTTGTTT
1 CTATTGTATTTTATATC-AATAAATATACTTATTTACAATCTATGAAAAAATTAAAAAATTATTT
*
77170088 ATATTGTATT
65 GTATTGTATT
* * *
77170098 CTACTATATTTTACATCAATAATATATACTTATTTACAAT
1 CTATTGTATTTTATATCAATAA-ATATACTTATTTACAAT
77170138 TTACCAAAAA
Statistics
Matches: 210, Mismatches: 35, Indels: 26
0.77 0.13 0.10
Matches are distributed among these distances:
66 24 0.11
67 4 0.02
68 5 0.02
69 16 0.08
70 1 0.00
71 1 0.00
72 15 0.07
73 3 0.01
74 26 0.12
75 91 0.43
76 24 0.11
ACGTcount: A:0.40, C:0.08, G:0.05, T:0.46
Consensus pattern (74 bp):
CTATTGTATTTTATATCAATAAATATACTTATTTACAATCTATGAAAAAATTAAAAAATTATTTG
TATTGTATT
Found at i:77170052 original size:149 final size:142
Alignment explanation
Indices: 77169808--77170137 Score: 377
Period size: 141 Copynumber: 2.3 Consensus size: 142
77169798 AACGCAATCA
*
77169808 CTATTGTATTTTACATCAAT-A-ATATACTTATTTACAATCTATGAAAACAATAGAAAAATTATT
1 CTATTGTATTTTACATCAATAATATATACTTATTTACAATCTA-GAAAAAAATAGAAAAATTATT
* ** * * *
77169871 TGTATTGTATTCTATTGTAATTTATATCAATAACATTTATTTATTTACAATATATGAAAAAATTT
65 TGTATTATATTCTATTGTAATGCATATCAAT-A-ATATATTTATTTACAACATACG----AA---
*
77169936 AAAAATTT-TTTGTATTGTATT
121 AAAAATTTGTTTATATTGTATT
* *
77169957 TTATTGTATTTTATATCAATAATATATACTTATTTACAATCTA-AAAATAAATTA-AAAAATTAT
1 CTATTGTATTTTACATCAATAATATATACTTATTTACAATCTAGAAAA-AAA-TAGAAAAATTAT
*
77170020 TTGTATTATATTCTATTGT-ATGCCT-TCTAATAATATATTTATTTACAACATACGAAAAAAATT
64 TTGTATTATATTCTATTGTAATGCATATC-AATAATATATTTATTTACAACATACGAAAAAAATT
77170083 TGTTTATATTGTATT
128 TGTTTATATTGTATT
* *
77170098 CTACTATATTTTACATCAATAATATATACTTATTTACAAT
1 CTATTGTATTTTACATCAATAATATATACTTATTTACAAT
77170138 TTACCAAAAA
Statistics
Matches: 160, Mismatches: 15, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
140 8 0.05
141 48 0.30
143 2 0.01
147 19 0.12
148 3 0.02
149 28 0.17
150 30 0.19
151 22 0.14
ACGTcount: A:0.40, C:0.08, G:0.05, T:0.46
Consensus pattern (142 bp):
CTATTGTATTTTACATCAATAATATATACTTATTTACAATCTAGAAAAAAATAGAAAAATTATTT
GTATTATATTCTATTGTAATGCATATCAATAATATATTTATTTACAACATACGAAAAAAATTTGT
TTATATTGTATT
Found at i:77172212 original size:25 final size:26
Alignment explanation
Indices: 77172177--77172225 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
77172167 AGAAATTTTT
*
77172177 CTTTTCTTTTTTAGATTAGGTTTTCA
1 CTTTTCTTTTTTAGATTAGATTTTCA
*
77172203 CTTTTC-TTTTTAGGTTAGATTTT
1 CTTTTCTTTTTTAGATTAGATTTT
77172226 AGTTTTGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.14, C:0.10, G:0.12, T:0.63
Consensus pattern (26 bp):
CTTTTCTTTTTTAGATTAGATTTTCA
Found at i:77178009 original size:48 final size:48
Alignment explanation
Indices: 77177925--77178112 Score: 223
Period size: 48 Copynumber: 3.9 Consensus size: 48
77177915 GACATTTGGG
* * *
77177925 TGATATGAGTGCCAGTGTAAGACCATGTCTAGGACATGGCATTGGCAT
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * * *
77177973 TGATGTGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCAA
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
** * * * *
77178021 CAATATGAGAGCCAATGTAAGACCATGTCTGGGACATAGCATCGGCAT
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * *
77178069 TGATAAGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
77178113 ACCATGAGAT
Statistics
Matches: 113, Mismatches: 27, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 113 1.00
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
Found at i:77178125 original size:96 final size:96
Alignment explanation
Indices: 77177929--77178147 Score: 289
Period size: 96 Copynumber: 2.3 Consensus size: 96
77177919 TTTGGGTGAT
* * * ** *
77177929 ATGAGTGCCAGTGTAAGACCATGTCTAGGACATGGCATTGGCATTGATGTGTGTGCTAGTGTAAG
1 ATGAGAGCCAGTGTAAGACCATGTCTAGGACATAGCATCGGCATTGATAAGTGCGCTAGTGTAAG
* *
77177994 ACCATGTTTGGGACATGGCATCAGCAACAAT
66 ACCATGTCTGGGACATGGCATCAGCAACAAG
* *
77178025 ATGAGAGCCAATGTAAGACCATGTCTGGGACATAGCATCGGCATTGATAAGTGCGCTAGTGTAAG
1 ATGAGAGCCAGTGTAAGACCATGTCTAGGACATAGCATCGGCATTGATAAGTGCGCTAGTGTAAG
*
77178090 ACCATGTCTGGGACATGGCATC-G-ACCATGAG
66 ACCATGTCTGGGACATGGCATCAGCAACA--AG
* *
77178121 ATGAGAGCTAGTGTAAGACCACGTCTA
1 ATGAGAGCCAGTGTAAGACCATGTCTA
77178148 AGCCAGTGTA
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
94 3 0.03
95 1 0.01
96 102 0.96
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (96 bp):
ATGAGAGCCAGTGTAAGACCATGTCTAGGACATAGCATCGGCATTGATAAGTGCGCTAGTGTAAG
ACCATGTCTGGGACATGGCATCAGCAACAAG
Found at i:77178131 original size:48 final size:48
Alignment explanation
Indices: 77177929--77178146 Score: 215
Period size: 48 Copynumber: 4.5 Consensus size: 48
77177919 TTTGGGTGAT
* * * *
77177929 ATGAGTGCCAGTGTAAGACCATGTCTAGGACATGGCATTGGCATTGATG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-G
* * * * *** *
77177978 -TGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCAACAAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
* * * *
77178025 ATGAGAGCCAATGTAAGACCATGTCTGGGACATAGCATCGGCATTGAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
* * * *
77178073 AAGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCA-TGAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG-GCATTGAG
*
77178121 ATGAGAGCTAGTGTAAGACCACGTCT
1 ATGAGAGCTAGTGTAAGACCATGTCT
77178147 AAGCCAGTGT
Statistics
Matches: 135, Mismatches: 32, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
48 133 0.99
49 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (48 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
Found at i:77180356 original size:40 final size:40
Alignment explanation
Indices: 77180273--77180535 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
77180263 TTGAATGCTG
* * * * * *
77180273 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
77180313 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
77180353 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
77180393 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
77180433 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
77180473 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
77180512 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
77180536 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:77180555 original size:79 final size:80
Alignment explanation
Indices: 77180312--77180570 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
77180302 AAGTGAATAT
* * * * * *
77180312 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
77180376 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
77180392 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
77180457 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
77180472 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
77180536 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
77180551 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
77180571 TACGTCATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:77202156 original size:73 final size:73
Alignment explanation
Indices: 77201914--77202242 Score: 311
Period size: 74 Copynumber: 4.5 Consensus size: 73
77201904 AACGCAATCA
*
77201914 CTATTGTATTTTACATCAAT-A-ATATACTTATTTACAATCTATGAAAACAA-TAGAAAAATTAT
1 CTATTGTA-TTTATATCAATAATATATACTTATTTACAATCTA-GAAAA-AATTA-AAAAATTAT
77201976 TTGTATTGTATT
62 TTGTATTGTATT
* * * * * *
77201988 CTATTGTAATTTATATCAATAACATTTATTTATTTACAATATATGAAAAAATTTAAAAATTTTTT
1 CTATTGT-ATTTATATCAATAATATATACTTATTTACAATCTA-GAAAAAATTAAAAAATTATTT
77202053 GTATTGTATT
64 GTATTGTATT
*
77202063 TTATTGTATTTATATCAATAATATATACTTATTTACAATCTA-AAAATAATTAAAAAATTATTTG
1 CTATTGTATTTATATCAATAATATATACTTATTTACAATCTAGAAAA-AATTAAAAAATTATTTG
*
77202127 TATTATATT
65 TATTGTATT
*** * ** * * *
77202136 CTATTGTATGCCT-TCTAATAATATAT--TTATTTACAA-C-ATACGAAA--AAAAATTTGTTTA
1 CTATTGTATTTATATC-AATAATATATACTTATTTACAATCTAGAAAAAATTAAAAAATTATTTG
77202194 TATTGTATT
65 TATTGTATT
* * *
77202203 CTACTATATTTTACATCAATAATATATACTTATTTACAAT
1 CTATTGTA-TTTATATCAATAATATATACTTATTTACAAT
77202243 TTACCAAAAA
Statistics
Matches: 213, Mismatches: 30, Indels: 27
0.79 0.11 0.10
Matches are distributed among these distances:
67 24 0.11
68 11 0.05
69 5 0.02
70 13 0.06
71 10 0.05
72 6 0.03
73 42 0.20
74 48 0.23
75 30 0.14
76 24 0.11
ACGTcount: A:0.40, C:0.09, G:0.05, T:0.46
Consensus pattern (73 bp):
CTATTGTATTTATATCAATAATATATACTTATTTACAATCTAGAAAAAATTAAAAAATTATTTGT
ATTGTATT
Found at i:77202185 original size:148 final size:148
Alignment explanation
Indices: 77201915--77202242 Score: 376
Period size: 148 Copynumber: 2.2 Consensus size: 148
77201905 ACGCAATCAC
77201915 TATTGTATTTTACATCAATAATATACTTATTTACAATCTATGAAAACAATAGAAAAATTATTTGT
1 TATTGTATTTTACATCAATAATATACTTATTTACAATCTA-GAAAACAATAGAAAAATTATTTGT
* ** * * *
77201980 ATTGTATTCTATTGTAATTTATATCAATAACATTTATTTATTTACAATATATGAAAAAATTTAAA
65 ATTATATTCTATTGTAATGCATATCAATAACATATATTTATTTACAACATACGAAAAAATTTAAA
77202045 AATTTTTTGTATTGTATTT
130 AATTTTTTGTATTGTATTT
* *
77202064 TATTGTA-TTTATATCAATAATATATACTTATTTACAATCTA-AAAATAATTA-AAAAATTATTT
1 TATTGTATTTTACATCAAT-A-ATATACTTATTTACAATCTAGAAAACAA-TAGAAAAATTATTT
*
77202126 GTATTATATTCTATTGT-ATGCCT-TCTAAT-A-ATATATTTATTTACAACATACG---AAA---
63 GTATTATATTCTATTGTAATGCATATC-AATAACATATATTTATTTACAACATACGAAAAAATTT
* *
77202181 AAAAATTTGTTTATATTGTATTC
127 AAAAATTT-TTTGTATTGTATTT
* *
77202204 TACTATATTTTACATCAATAATATATACTTATTTACAAT
1 TATTGTATTTTACATCAAT-A-ATATACTTATTTACAAT
77202243 TTACCAAAAA
Statistics
Matches: 159, Mismatches: 14, Indels: 20
0.82 0.07 0.10
Matches are distributed among these distances:
139 8 0.05
140 17 0.11
141 30 0.19
142 3 0.02
145 19 0.12
146 3 0.02
147 6 0.04
148 43 0.27
149 10 0.06
150 20 0.13
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (148 bp):
TATTGTATTTTACATCAATAATATACTTATTTACAATCTAGAAAACAATAGAAAAATTATTTGTA
TTATATTCTATTGTAATGCATATCAATAACATATATTTATTTACAACATACGAAAAAATTTAAAA
ATTTTTTGTATTGTATTT
Found at i:77204316 original size:25 final size:26
Alignment explanation
Indices: 77204281--77204329 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
77204271 AGAAATTTTT
*
77204281 CTTTTCTTTTTTAGATTAGGTTTTCA
1 CTTTTCTTTTTTAGATTAGATTTTCA
*
77204307 CTTTTC-TTTTTAGGTTAGATTTT
1 CTTTTCTTTTTTAGATTAGATTTT
77204330 AGTTTTGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.14, C:0.10, G:0.12, T:0.63
Consensus pattern (26 bp):
CTTTTCTTTTTTAGATTAGATTTTCA
Found at i:77210106 original size:48 final size:48
Alignment explanation
Indices: 77210022--77210209 Score: 223
Period size: 48 Copynumber: 3.9 Consensus size: 48
77210012 GACATTTGGG
* * *
77210022 TGATATGAGTGCCAGTGTAAGACCATGTCTAGGACATGGCATTGGCAT
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * * *
77210070 TGATGTGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCAA
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
** * * * *
77210118 CAATATGAGAGCCAATGTAAGACCATGTCTGGGACATAGCATCGGCAT
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * *
77210166 TGATAAGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
77210210 ACCATGAGAT
Statistics
Matches: 113, Mismatches: 27, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 113 1.00
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
Found at i:77210222 original size:96 final size:96
Alignment explanation
Indices: 77210026--77210244 Score: 289
Period size: 96 Copynumber: 2.3 Consensus size: 96
77210016 TTTGGGTGAT
* * * ** *
77210026 ATGAGTGCCAGTGTAAGACCATGTCTAGGACATGGCATTGGCATTGATGTGTGTGCTAGTGTAAG
1 ATGAGAGCCAGTGTAAGACCATGTCTAGGACATAGCATCGGCATTGATAAGTGCGCTAGTGTAAG
* *
77210091 ACCATGTTTGGGACATGGCATCAGCAACAAT
66 ACCATGTCTGGGACATGGCATCAGCAACAAG
* *
77210122 ATGAGAGCCAATGTAAGACCATGTCTGGGACATAGCATCGGCATTGATAAGTGCGCTAGTGTAAG
1 ATGAGAGCCAGTGTAAGACCATGTCTAGGACATAGCATCGGCATTGATAAGTGCGCTAGTGTAAG
*
77210187 ACCATGTCTGGGACATGGCATC-G-ACCATGAG
66 ACCATGTCTGGGACATGGCATCAGCAACA--AG
* *
77210218 ATGAGAGCTAGTGTAAGACCACGTCTA
1 ATGAGAGCCAGTGTAAGACCATGTCTA
77210245 AGCCAGTGTA
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
94 3 0.03
95 1 0.01
96 102 0.96
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (96 bp):
ATGAGAGCCAGTGTAAGACCATGTCTAGGACATAGCATCGGCATTGATAAGTGCGCTAGTGTAAG
ACCATGTCTGGGACATGGCATCAGCAACAAG
Found at i:77210228 original size:48 final size:48
Alignment explanation
Indices: 77210026--77210243 Score: 215
Period size: 48 Copynumber: 4.5 Consensus size: 48
77210016 TTTGGGTGAT
* * * *
77210026 ATGAGTGCCAGTGTAAGACCATGTCTAGGACATGGCATTGGCATTGATG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-G
* * * * *** *
77210075 -TGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCAACAAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
* * * *
77210122 ATGAGAGCCAATGTAAGACCATGTCTGGGACATAGCATCGGCATTGAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
* * * *
77210170 AAGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCA-TGAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG-GCATTGAG
*
77210218 ATGAGAGCTAGTGTAAGACCACGTCT
1 ATGAGAGCTAGTGTAAGACCATGTCT
77210244 AAGCCAGTGT
Statistics
Matches: 135, Mismatches: 32, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
48 133 0.99
49 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (48 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
Found at i:77212447 original size:40 final size:40
Alignment explanation
Indices: 77212364--77212626 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
77212354 TTGAATGCTG
* * * * * *
77212364 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
77212404 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
77212444 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
77212484 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
77212524 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
77212564 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
77212603 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
77212627 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:77212646 original size:79 final size:80
Alignment explanation
Indices: 77212403--77212661 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
77212393 AAGTGAATAT
* * * * * *
77212403 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
77212467 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
77212483 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
77212548 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
77212563 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
77212627 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
77212642 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
77212662 TACGTCATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:77220396 original size:40 final size:40
Alignment explanation
Indices: 77220313--77220575 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
77220303 TTGAATGCTG
* * * * * *
77220313 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
77220353 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
77220393 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
77220433 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
77220473 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
77220513 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
77220552 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
77220576 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:77220595 original size:79 final size:80
Alignment explanation
Indices: 77220352--77220610 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
77220342 AAGTGAATAT
* * * * * *
77220352 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
77220416 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
77220432 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
77220497 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
77220512 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
77220576 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
77220591 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
77220611 TACGTCATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:77228049 original size:42 final size:44
Alignment explanation
Indices: 77228003--77228098 Score: 126
Period size: 44 Copynumber: 2.2 Consensus size: 44
77227993 GTTCCAGCAG
77228003 GGTCTTACA-AGAAATCA-AA-TACAATGCCAACATCCCAAACGT
1 GGTCTTACACAGAAATCATAAGT-CAATGCCAACATCCCAAACGT
* * * *
77228045 GGTCTTACACATAAATCATAAGTCGATGCCAACGTCCCAGACGT
1 GGTCTTACACAGAAATCATAAGTCAATGCCAACATCCCAAACGT
77228089 GGTCTTACAC
1 GGTCTTACAC
77228099 GATAACACAT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
42 9 0.19
43 7 0.15
44 30 0.64
45 1 0.02
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (44 bp):
GGTCTTACACAGAAATCATAAGTCAATGCCAACATCCCAAACGT
Found at i:77231162 original size:43 final size:44
Alignment explanation
Indices: 77231091--77231225 Score: 184
Period size: 43 Copynumber: 3.1 Consensus size: 44
77231081 TATCGAAATG
*
77231091 TGATATTCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
77231135 TGATA-TCGGGCTTTGAGCTTAGTAGGCTATGATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
77231178 T-ATTATTCGAGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAAA
1 TGA-TATTCG-GGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
77231223 TGA
1 TGA
77231226 AATGTTATGT
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
42 1 0.01
43 37 0.47
44 8 0.10
45 31 0.40
46 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (44 bp):
TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:77231556 original size:38 final size:38
Alignment explanation
Indices: 77231522--77231686 Score: 269
Period size: 38 Copynumber: 4.3 Consensus size: 38
77231512 GCAGGCTATA
*
77231522 TGCTGG-AATTATATCCGGGTTAAATCCCGTAGGCTTCG
1 TGCTGGTAA-TATATCCGGGTTAAATCCCGCAGGCTTCG
*
77231560 TGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
* *
77231598 TGCTGGTAATATATCCGGGTTAATTCCCGTAGGCTTCG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
*
77231636 TGCTGGTAATATATCCAGGTTAAATCCCGCAGGCTTCG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
77231674 TGCTGGTAATATA
1 TGCTGGTAATATA
77231687 GCTTCGTGCT
Statistics
Matches: 118, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 116 0.98
39 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (38 bp):
TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:77231692 original size:19 final size:19
Alignment explanation
Indices: 77231668--77231705 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
77231658 AATCCCGCAG
77231668 GCTTCGTGCTGGTAATATA
1 GCTTCGTGCTGGTAATATA
77231687 GCTTCGTGCTGGTAATATA
1 GCTTCGTGCTGGTAATATA
77231706 TCCGGGTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (19 bp):
GCTTCGTGCTGGTAATATA
Found at i:77231721 original size:57 final size:57
Alignment explanation
Indices: 77231630--77231743 Score: 192
Period size: 57 Copynumber: 2.0 Consensus size: 57
77231620 ATTCCCGTAG
77231630 GCTTCGTGCTGGTAATATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATA
1 GCTTCGTGCTGGTAATATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATA
* * * *
77231687 GCTTCGTGCTGGTAATATATCCGGGTTAATTCCCGCATGCTTCGTGCTGGTATTATA
1 GCTTCGTGCTGGTAATATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATA
77231744 TCCGAGTTAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.20, C:0.21, G:0.25, T:0.34
Consensus pattern (57 bp):
GCTTCGTGCTGGTAATATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATA
Found at i:77231738 original size:38 final size:38
Alignment explanation
Indices: 77231687--77231788 Score: 141
Period size: 38 Copynumber: 2.7 Consensus size: 38
77231677 TGGTAATATA
* * *
77231687 GCTTCGTGCTGGTAATATATCCGGGTTAATTCCCGCAT
1 GCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAG
*
77231725 GCTTCGTGCTGGTATTATATCCGAGTTAAATCCCGCAG
1 GCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAG
* * *
77231763 GCCTAGTGCTGGTATTATATTCGGGT
1 GCTTCGTGCTGGTATTATATCCGGGT
77231789 CTTTGAGCCT
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 56 1.00
ACGTcount: A:0.19, C:0.22, G:0.25, T:0.34
Consensus pattern (38 bp):
GCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAG
Found at i:77231755 original size:95 final size:95
Alignment explanation
Indices: 77231592--77231781 Score: 310
Period size: 95 Copynumber: 2.0 Consensus size: 95
77231582 AATCCTGCAG
*
77231592 GCTTCGTGCTGGTAATATATCCGGGTTAATTCCCGTAGGCTTCGTGCTGGTAATATATCCAGGTT
1 GCTTCGTGCTGGTAATATATCCGGGTTAATTCCCGCAGGCTTCGTGCTGGTAATATATCCAGGTT
* *
77231657 AAATCCCGCAGGCTTCGTGCTGGTAATATA
66 AAATCCCGCAGGCCTAGTGCTGGTAATATA
* *
77231687 GCTTCGTGCTGGTAATATATCCGGGTTAATTCCCGCATGCTTCGTGCTGGTATTATATCC-GAGT
1 GCTTCGTGCTGGTAATATATCCGGGTTAATTCCCGCAGGCTTCGTGCTGGTAATATATCCAG-GT
*
77231751 TAAATCCCGCAGGCCTAGTGCTGGTATTATA
65 TAAATCCCGCAGGCCTAGTGCTGGTAATATA
77231782 TTCGGGTCTT
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
94 1 0.01
95 87 0.99
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.33
Consensus pattern (95 bp):
GCTTCGTGCTGGTAATATATCCGGGTTAATTCCCGCAGGCTTCGTGCTGGTAATATATCCAGGTT
AAATCCCGCAGGCCTAGTGCTGGTAATATA
Found at i:77231829 original size:45 final size:44
Alignment explanation
Indices: 77231779--77231905 Score: 173
Period size: 45 Copynumber: 2.8 Consensus size: 44
77231769 TGCTGGTATT
*
77231779 ATATTCGGGTCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACA
1 ATATTCGGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACA
* * *
77231824 ATATTCGGGCCCTTGGGCCTAGCAGGCTATAATGCCGGTGAGATA
1 ATATTCGGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACA
* *
77231869 CTATTCGGGCTTTCAAGCCTAGCAGGCTATAATGCCG
1 ATATTCGGGCTTT-GAGCCTAGCAGGCTATAATGCCG
77231906 ATAAAATGAT
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
44 3 0.04
45 69 0.96
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (44 bp):
ATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACA
Found at i:77236660 original size:25 final size:24
Alignment explanation
Indices: 77236632--77236691 Score: 59
Period size: 25 Copynumber: 2.4 Consensus size: 24
77236622 CTTCTTTTTT
* *
77236632 TTTTTGTTTTCTTTTTTAGATTAGG
1 TTTTTGTTTTCTTTTTAAG-TTAGA
77236657 TTTTCTCG-TTTCTTTTTAAGTTAGA
1 TTTT-T-GTTTTCTTTTTAAGTTAGA
*
77236682 TTTTAGTTTT
1 TTTTTGTTTT
77236692 GTTGTTTACT
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
23 1 0.03
24 3 0.10
25 12 0.41
26 12 0.41
27 1 0.03
ACGTcount: A:0.13, C:0.07, G:0.13, T:0.67
Consensus pattern (24 bp):
TTTTTGTTTTCTTTTTAAGTTAGA
Found at i:77237914 original size:85 final size:85
Alignment explanation
Indices: 77237782--77237941 Score: 232
Period size: 85 Copynumber: 1.9 Consensus size: 85
77237772 TTCACCATAG
* * * * * *
77237782 GTAAGATAATGTTAGAGATCATGTTAGAATCCAATTTCGAATGATCCTGTGTCATACCTGCAACA
1 GTAAGACAATGTTAGAGATCAGGTCAAAATCCAATTCCGAATGATCCTGTGACATACCTGCAACA
*
77237847 ACACACGTATTTCAAAATAA
66 ACACAAGTATTTCAAAATAA
*
77237867 GTAAGACAATGTTAGAGATTAGGTCAAAATCCAATTCC-AGATGATCCTGTGACATACCTGCAAC
1 GTAAGACAATGTTAGAGATCAGGTCAAAATCCAATTCCGA-ATGATCCTGTGACATACCTGCAAC
77237931 AACACAAGTAT
65 AACACAAGTAT
77237942 GTGAAACGTT
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
84 1 0.02
85 65 0.98
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (85 bp):
GTAAGACAATGTTAGAGATCAGGTCAAAATCCAATTCCGAATGATCCTGTGACATACCTGCAACA
ACACAAGTATTTCAAAATAA
Found at i:77251642 original size:3 final size:3
Alignment explanation
Indices: 77251634--77251668 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
77251624 AAAGAACGAG
*
77251634 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA GGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
77251669 TGATTTAATC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:77252514 original size:16 final size:15
Alignment explanation
Indices: 77252485--77252518 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
77252475 CTATAAATCC
77252485 TAAAAAAATATATTA
1 TAAAAAAATATATTA
*
77252500 TAAAAATAATTTATTA
1 TAAAAA-AATATATTA
77252516 TAA
1 TAA
77252519 CTTTATATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
TAAAAAAATATATTA
Found at i:77264669 original size:20 final size:20
Alignment explanation
Indices: 77264619--77264670 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
77264609 GTGGTCATAC
*
77264619 ACACGCCCGTGTGTCTTGGG
1 ACACGCCCGTGTGGCTTGGG
* *
77264639 ACATGCTCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
77264659 ACACGCCCGTGT
1 ACACGCCCGTGT
77264671 CCTCAGCCCG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.12, C:0.29, G:0.35, T:0.25
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:77266403 original size:45 final size:45
Alignment explanation
Indices: 77266353--77266442 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
77266343 CAAAACATGA
77266353 GTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
1 GTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
* *
77266398 GTCACATATATCATGAACTCAGATCACAACTCAATGAGTTCAGAT
1 GTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
77266443 TTCATAGTTA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.24
Consensus pattern (45 bp):
GTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
Found at i:77266440 original size:21 final size:21
Alignment explanation
Indices: 77266371--77266442 Score: 65
Period size: 21 Copynumber: 3.3 Consensus size: 21
77266361 CATCATGAAC
*
77266371 TCAGACCACAACTCAATGAGT
1 TCAGATCACAACTCAATGAGT
* **
77266392 TCAGATGTCACATATATC-ATGAAC
1 TCAGA--TCACA-A-CTCAATGAGT
77266416 TCAGATCACAACTCAATGAGT
1 TCAGATCACAACTCAATGAGT
77266437 TCAGAT
1 TCAGAT
77266443 TTCATAGTTA
Statistics
Matches: 39, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
20 2 0.05
21 16 0.41
22 5 0.13
23 4 0.10
24 10 0.26
25 2 0.05
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.25
Consensus pattern (21 bp):
TCAGATCACAACTCAATGAGT
Found at i:77269871 original size:27 final size:27
Alignment explanation
Indices: 77269809--77269871 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
77269799 AGTTTGACAG
* *
77269809 GACATTAAACACGGGATAGTCTGCCAG
1 GACATTAAAAACGGGATAGTCTGCCAA
* * *
77269836 GACGA-TAAAAATGGGGTTGTCTGCCAA
1 GAC-ATTAAAAACGGGATAGTCTGCCAA
77269863 GACATTAAA
1 GACATTAAA
77269872 TATCGAAACA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
26 1 0.03
27 27 0.93
28 1 0.03
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (27 bp):
GACATTAAAAACGGGATAGTCTGCCAA
Found at i:77276543 original size:139 final size:138
Alignment explanation
Indices: 77276182--77276564 Score: 617
Period size: 136 Copynumber: 2.8 Consensus size: 138
77276172 GAGAACATAG
* *
77276182 ATATAATTAATATATGAATTTAATTCATACAAAATATTAATTGTATATATTTTACCGAATTTTTT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* * *
77276247 AATATAAACAGTTATATGATTTAATTTCGGTCAAAATATAAAAGACATAGAAATTAATATTCTTT
66 AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATAGAAATTAATATGCTTT
* *
77276312 TGGAAAGA
131 TAGAAACA
* *
77276320 ATATAATTAATATATGAATTTGATTCATGC-AAA-ATTAATTGCATATATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* * *
77276383 AATATAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAATACATGGAAATTAATATGCTTT
66 AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATAGAAATTAATATGCTTT
77276448 TAGAAACA
131 TAGAAACA
* *
77276456 ATATAATTTAATATATGAATTTGATTCATACAAAATATTAATTTTATATATTTTACTGAATTTAT
1 ATATAA-TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTAT
77276521 TAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAA
65 TAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAA
77276565 AGCATGAAGA
Statistics
Matches: 225, Mismatches: 17, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
136 99 0.44
137 26 0.12
138 31 0.14
139 69 0.31
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.41
Consensus pattern (138 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATAGAAATTAATATGCTTT
TAGAAACA
Found at i:77278630 original size:17 final size:17
Alignment explanation
Indices: 77278605--77278644 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
77278595 CTCAATTAAT
77278605 TTAAA-TAATTTCTCAA
1 TTAAATTAATTTCTCAA
77278621 TTAAATTAATTTCTCAA
1 TTAAATTAATTTCTCAA
*
77278638 TCAAATT
1 TTAAATT
77278645 CTAATTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (17 bp):
TTAAATTAATTTCTCAA
Found at i:77282017 original size:28 final size:27
Alignment explanation
Indices: 77281954--77282023 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
77281944 ATATTAAGTC
*
77281954 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
77281981 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
*
77282009 CGCATACTTAGTGCT
1 CGCACACTTAGTGCT
77282024 GTACAATTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 22 0.55
28 18 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:77282046 original size:29 final size:28
Alignment explanation
Indices: 77281953--77282049 Score: 106
Period size: 27 Copynumber: 3.5 Consensus size: 28
77281943 TATATTAAGT
* *
77281953 CCGCACACTCAGTGCTATATAATC-AAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* *
77281980 TCGCACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* * * *
77282008 TCGCATACTTAGTGCTGTACAATTTAAAC
1 CCGCACACTTAGTGCTATACAA-TCAAAC
77282037 CCGCACACTTAGT
1 CCGCACACTTAGT
77282050 TCCAATCTCA
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 22 0.37
28 22 0.37
29 16 0.27
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.28
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATACAATCAAAC
Found at i:77282511 original size:2 final size:2
Alignment explanation
Indices: 77282504--77282535 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
77282494 CATACTTATG
*
77282504 TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
77282536 CTTCGGAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:77285548 original size:31 final size:31
Alignment explanation
Indices: 77285513--77285584 Score: 117
Period size: 31 Copynumber: 2.3 Consensus size: 31
77285503 AAGTATTAGG
*
77285513 TACTATGTACCGATGTTTATATTGTATCAGA
1 TACTATGTACCGATGTTTATATTATATCAGA
* *
77285544 TACTATGTATCGATGTTTATATTATATCAGG
1 TACTATGTACCGATGTTTATATTATATCAGA
77285575 TACTATGTAC
1 TACTATGTAC
77285585 TGGTGTTGGA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.43
Consensus pattern (31 bp):
TACTATGTACCGATGTTTATATTATATCAGA
Found at i:77287010 original size:28 final size:28
Alignment explanation
Indices: 77286970--77287028 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
77286960 GAAGCAGTTA
* *
77286970 GGCCTGATGGGCCATATGAATGTGATTG
1 GGCCTGATGGGCCATATGAACGAGATTG
*
77286998 GGCCTGATGGGCCATGTGAACGAGATTG
1 GGCCTGATGGGCCATATGAACGAGATTG
77287026 GGC
1 GGC
77287029 TTAAAGGGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.20, C:0.17, G:0.39, T:0.24
Consensus pattern (28 bp):
GGCCTGATGGGCCATATGAACGAGATTG
Found at i:77287374 original size:27 final size:27
Alignment explanation
Indices: 77287344--77287709 Score: 329
Period size: 27 Copynumber: 13.6 Consensus size: 27
77287334 CGTAAAAAGG
* *
77287344 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCGAAATACCCCTGATTTGT
* **
77287371 AAAATTACCTAAATACCCCCAATTTGT
1 AAAATTACCGAAATACCCCTGATTTGT
* *
77287398 AAAA-TATCCAAAATACCCTTGA-TTGT
1 AAAATTA-CCGAAATACCCCTGATTTGT
* ** *
77287424 GAAATTACTAAAATACCCTTGATTTGT
1 AAAATTACCGAAATACCCCTGATTTGT
* *
77287451 AAAATCATCGAAATA-CCCTCGATTTGT
1 AAAATTACCGAAATACCCCT-GATTTGT
*
77287478 GAAATTACC-AAA-ACACCCTCGATTTGT
1 AAAATTACCGAAATAC-CCCT-GATTTGT
* * *
77287505 AAAATTATCGAAACACCCTTGATTTGT
1 AAAATTACCGAAATACCCCTGATTTGT
77287532 AAAATTACCGGAAA-A-CCCTGATTTGT
1 AAAATTACC-GAAATACCCCTGATTTGT
* * * *
77287558 GAAATTATCGAAACA-CCCTCGATTTAT
1 AAAATTACCGAAATACCCCT-GATTTGT
* * *
77287585 AAAATTACCGAAACACCCTTGATTTAT
1 AAAATTACCGAAATACCCCTGATTTGT
77287612 AAAATTACCGAAATACCCTCT-ATTTGT
1 AAAATTACCGAAATACCC-CTGATTTGT
*
77287639 AAAATTATCGAAATA-CCCTCGATTTGT
1 AAAATTACCGAAATACCCCT-GATTTGT
* * *
77287666 AAAATTATCGAAACACCCCCGATTTGT
1 AAAATTACCGAAATACCCCTGATTTGT
*
77287693 AAAATTATCGAAATACC
1 AAAATTACCGAAATACC
77287710 TTTGTAGTGT
Statistics
Matches: 286, Mismatches: 37, Indels: 32
0.81 0.10 0.09
Matches are distributed among these distances:
25 7 0.02
26 53 0.19
27 207 0.72
28 17 0.06
29 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTGATTTGT
Found at i:77287502 original size:54 final size:54
Alignment explanation
Indices: 77287366--77287709 Score: 399
Period size: 54 Copynumber: 6.4 Consensus size: 54
77287356 ATACCCCTGG
* * * * * *
77287366 TTTGTAAAATTACCTAAATACCCCCAATTTGTAAAA-TATCCAAAATACCCTTGA
1 TTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTAT-CGAAACACCCTCGA
* ** * * *
77287420 -TTGTGAAATTACTAAAATACCCTTGATTTGTAAAATCATCGAAATACCCTCGA
1 TTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAACACCCTCGA
* * * *
77287473 TTTGTGAAATTACCAAAACACCCTCGATTTGTAAAATTATCGAAACACCCTTGA
1 TTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAACACCCTCGA
*
77287527 TTTGTAAAATTACCGGAAA-ACCCT-GATTTGTGAAATTATCGAAACACCCTCGA
1 TTTGTAAAATTACC-GAAATACCCTCGATTTGTAAAATTATCGAAACACCCTCGA
* * * * * * *
77287580 TTTATAAAATTACCGAAACACCCTTGATTTATAAAATTACCGAAATACCCTCTA
1 TTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAACACCCTCGA
* *
77287634 TTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTATCGAAACACCCCCGA
1 TTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAACACCCTCGA
*
77287688 TTTGTAAAATTATCGAAATACC
1 TTTGTAAAATTACCGAAATACC
77287710 TTTGTAGTGT
Statistics
Matches: 251, Mismatches: 34, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
52 4 0.02
53 86 0.34
54 158 0.63
55 3 0.01
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAACACCCTCGA
Found at i:77287588 original size:134 final size:134
Alignment explanation
Indices: 77287344--77287705 Score: 410
Period size: 134 Copynumber: 2.7 Consensus size: 134
77287334 CGTAAAAAGG
* * * * *
77287344 AAAATTACCAAAATACCC-CTGGTTTGTAAAATTACCTAAATACCCCCAATTTGTAAAA-TATCC
1 AAAATTACCAAAATACCCTC-GATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTA-CC
* * * * * * * *
77287407 AAAATACCCTTGA-TTGTGAAATTA-CTAAAATACCCTTGATTTGTAAAATCATCGAAATACCCT
64 GAAACACCC-TGATTTGTGAAATTATC-GAAACACCCTCGATTTATAAAATCACCGAAACACCCT
*
77287470 CGATTTGT
127 CGATTTAT
* * * *
77287478 GAAATTACCAAAACACCCTCGATTTGTAAAATTATCGAAACACCCTTGATTTGTAAAATTACCGG
1 AAAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACC-G
* *
77287543 AAA-ACCCTGATTTGTGAAATTATCGAAACACCCTCGATTTATAAAATTACCGAAACACCCTTGA
65 AAACACCCTGATTTGTGAAATTATCGAAACACCCTCGATTTATAAAATCACCGAAACACCCTCGA
77287607 TTTAT
130 TTTAT
* * *
77287612 AAAATTACCGAAATACCCTCTATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTATCGA
1 AAAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGA
* *
77287677 AACACCCCCGATTTGTAAAATTATCGAAA
66 AACA-CCCTGATTTGTGAAATTATCGAAA
77287706 TACCTTTGTA
Statistics
Matches: 193, Mismatches: 28, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
133 7 0.04
134 157 0.81
135 29 0.15
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (134 bp):
AAAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGA
AACACCCTGATTTGTGAAATTATCGAAACACCCTCGATTTATAAAATCACCGAAACACCCTCGAT
TTAT
Found at i:77287720 original size:27 final size:27
Alignment explanation
Indices: 77287395--77287778 Score: 150
Period size: 27 Copynumber: 14.3 Consensus size: 27
77287385 ACCCCCAATT
* *
77287395 TGTAAAA-TATCCAAAATACCCTTG-AT
1 TGTAAAATTAT-CGAAATACCCTTGTAG
* * *
77287421 TGTGAAATTA-CTAAAATACCCTTG-ATT
1 TGTAAAATTATC-GAAATACCCTTGTA-G
* * *
77287448 TGTAAAATCATCGAAATACCCTCG-ATT
1 TGTAAAATTATCGAAATACCCTTGTA-G
* * * * * *
77287475 TGTGAAATTACCAAAACACCCTCG-ATT
1 TGTAAAATTATCGAAATACCCTTGTA-G
* *
77287502 TGTAAAATTATCGAAACACCCTTG-ATT
1 TGTAAAATTATCGAAATACCCTTGTA-G
* *
77287529 TGTAAAATTACCGGAAA-ACCC-TG-ATT
1 TGTAAAATTATC-GAAATACCCTTGTA-G
* * * *
77287555 TGTGAAATTATCGAAACACCCTCG-ATT
1 TGTAAAATTATCGAAATACCCTTGTA-G
* * * *
77287582 TATAAAATTACCGAAACACCCTTG-ATT
1 TGTAAAATTATCGAAATACCCTTGTA-G
* * * *
77287609 TATAAAATTACCGAAATACCC-TCTATT
1 TGTAAAATTATCGAAATACCCTTGTA-G
* *
77287636 TGTAAAATTATCGAAATACCCTCG-ATT
1 TGTAAAATTATCGAAATACCCTTGTA-G
* ** *
77287663 TGTAAAATTATCGAAACACCCCCG-ATT
1 TGTAAAATTATCGAAATACCCTTGTA-G
*
77287690 TGTAAAATTATCGAAATACCTTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
* *
77287717 TGTAAAATTATCAAAATACCATTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
* * * *
77287744 TGTAAAATGACCGACATACCCCTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
77287771 GGTAAAAT
1 TGTAAAAT
77287779 GACTGTTTGC
Statistics
Matches: 304, Mismatches: 44, Indels: 19
0.83 0.12 0.05
Matches are distributed among these distances:
25 5 0.02
26 39 0.13
27 254 0.84
28 6 0.02
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCTTGTAG
Found at i:77287751 original size:81 final size:81
Alignment explanation
Indices: 77287366--77287736 Score: 405
Period size: 81 Copynumber: 4.6 Consensus size: 81
77287356 ATACCCCTGG
* *** * * *
77287366 TTTGTAAAATTACCTAAATACCCCCAATTTGTAAAA-TATCCAAAATACCCTTGA-TTGTGAAAT
1 TTTGTAAAATTACCGAAATACCCTGTATTTGTAAAATTAT-CGAAATACCCTCGATTTGTAAAAT
* *
77287429 TA-CTAAAATACCCTTGA
65 TATC-GAAACACCCTTGA
* * * * * *
77287446 TTTGTAAAATCATCGAAATACCCTCG-ATTTGTGAAATTACCAAAACACCCTCGATTTGTAAAAT
1 TTTGTAAAATTACCGAAATACCCT-GTATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAAT
77287510 TATCGAAACACCCTTGA
65 TATCGAAACACCCTTGA
* * *
77287527 TTTGTAAAATTACCGGAAA-ACCCTG-ATTTGTGAAATTATCGAAACACCCTCGATTTATAAAAT
1 TTTGTAAAATTACC-GAAATACCCTGTATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAAT
*
77287590 TACCGAAACACCCTTGA
65 TATCGAAACACCCTTGA
* *
77287607 TTTATAAAATTACCGAAATACCCTCTATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATT
1 TTTGTAAAATTACCGAAATACCCTGTATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATT
**
77287672 ATCGAAACACCCCCGA
66 ATCGAAACACCCTTGA
* * * *
77287688 TTTGTAAAATTATCGAAATACCTTTGTA-GTGTAAAATTATCAAAATACC
1 TTTGTAAAATTACCGAAATACC-CTGTATTTGTAAAATTATCGAAATACC
77287737 ATTGTAGTGT
Statistics
Matches: 251, Mismatches: 32, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
79 4 0.02
80 111 0.44
81 128 0.51
82 8 0.03
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (81 bp):
TTTGTAAAATTACCGAAATACCCTGTATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATT
ATCGAAACACCCTTGA
Found at i:77288356 original size:27 final size:27
Alignment explanation
Indices: 77288289--77288356 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 27
77288279 TGAGGCTAAG
* * *
77288289 ATGGGC-TAGGCCCAATTGATTCTGTT
1 ATGGGCTTTGGCCCAAATGATTCTGTA
* *
77288315 ATGGGCTGTGACCCAAATGATAT-TGTA
1 ATGGGCTTTGGCCCAAATGAT-TCTGTA
77288342 ATGGGCTTTGGCCCA
1 ATGGGCTTTGGCCCA
77288357 CGTATGCTCT
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
26 6 0.18
27 26 0.79
28 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (27 bp):
ATGGGCTTTGGCCCAAATGATTCTGTA
Found at i:77296455 original size:42 final size:42
Alignment explanation
Indices: 77296344--77296463 Score: 152
Period size: 43 Copynumber: 2.8 Consensus size: 42
77296334 TACCGTACCA
* * **
77296344 ATGCCATATCTTAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCTAGATATGGTCTTACACGTAATCTAATATCG
* *
77296386 ATGCCAATAGCCTAGCTATGGTCTTACACG-AAGTCTAATATCG
1 ATGCC-ATATCCTAGATATGGTCTTACACGTAA-TCTAATATCG
*
77296429 ATGCCATATCCTAGATATGGTCTTACAAGTAATCT
1 ATGCCATATCCTAGATATGGTCTTACACGTAATCT
77296464 TAGTAACCCT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
42 31 0.47
43 35 0.53
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (42 bp):
ATGCCATATCCTAGATATGGTCTTACACGTAATCTAATATCG
Found at i:77299319 original size:4 final size:4
Alignment explanation
Indices: 77299310--77299340 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
77299300 TTTAGTTTAG
77299310 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTT
77299341 ATGGTTTTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
CTTT
Found at i:77299925 original size:40 final size:40
Alignment explanation
Indices: 77299881--77299960 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
77299871 CCATAATTAG
77299881 ATTGGATTTATTCTCCCTTTGTAATCTCTTGAATTTTATC
1 ATTGGATTTATTCTCCCTTTGTAATCTCTTGAATTTTATC
77299921 ATTGGATTTATTCTCCCTTTGTAATCTCTTGAATTTTATC
1 ATTGGATTTATTCTCCCTTTGTAATCTCTTGAATTTTATC
77299961 TTTTTATGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.20, C:0.17, G:0.10, T:0.53
Consensus pattern (40 bp):
ATTGGATTTATTCTCCCTTTGTAATCTCTTGAATTTTATC
Found at i:77316871 original size:14 final size:14
Alignment explanation
Indices: 77316848--77316882 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
77316838 GGGCATGGTT
*
77316848 GTGTGATGGTGTGA
1 GTGTGGTGGTGTGA
77316862 GTGTGGTGGTGTGA
1 GTGTGGTGGTGTGA
*
77316876 GTTTGGT
1 GTGTGGT
77316883 TGTCTAGGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.09, C:0.00, G:0.51, T:0.40
Consensus pattern (14 bp):
GTGTGGTGGTGTGA
Found at i:77316953 original size:18 final size:17
Alignment explanation
Indices: 77316917--77316970 Score: 55
Period size: 18 Copynumber: 3.4 Consensus size: 17
77316907 AAATTGGGCT
77316917 TGTAGGCCACACGAGCA
1 TGTAGGCCACACGAGCA
77316934 TGTAGGCCCACACG-GACA
1 TGTAGG-CCACACGAG-CA
77316952 TGT----CACACGAGCA
1 TGTAGGCCACACGAGCA
77316965 TGTAGG
1 TGTAGG
77316971 TTTTAGGCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 13
0.70 0.00 0.30
Matches are distributed among these distances:
13 11 0.35
14 1 0.03
17 7 0.23
18 12 0.39
ACGTcount: A:0.28, C:0.28, G:0.30, T:0.15
Consensus pattern (17 bp):
TGTAGGCCACACGAGCA
Found at i:77321192 original size:27 final size:27
Alignment explanation
Indices: 77321162--77321319 Score: 118
Period size: 27 Copynumber: 5.9 Consensus size: 27
77321152 GTCAAATTGT
* *
77321162 AAAATTACCAAAGTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTTGATTTAC
*** *
77321189 AAAATTACCGTTTTACCCTTGATTTAT
1 AAAATTACCAAATTACCCTTGATTTAC
* **** *
77321216 AGAATTACTGTTTTACCCTTAATTTAC
1 AAAATTACCAAATTACCCTTGATTTAC
* **** *
77321243 AGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTTGATTTAC
* * *
77321270 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAATTACCCTTGATTTAC
*
77321297 AAAATTACCAAAATACCCTTGAT
1 AAAATTACCAAATTACCCTTGAT
77321320 CAGTAAAATT
Statistics
Matches: 110, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.36
Consensus pattern (27 bp):
AAAATTACCAAATTACCCTTGATTTAC
Found at i:77321222 original size:54 final size:54
Alignment explanation
Indices: 77321162--77321305 Score: 162
Period size: 54 Copynumber: 2.7 Consensus size: 54
77321152 GTCAAATTGT
* * * * *
77321162 AAAATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTACCCTTGATTTAT
1 AAAATTACTAAAATACCCTTGATTTACAAAATTACCGTTTTACCCTCGATTTAC
* **** * * *
77321216 AGAATTACTGTTTTACCCTTAATTTACAGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACTAAAATACCCTTGATTTACAAAATTACCGTTTTACCCTCGATTTAC
*
77321270 AAAATTACTAAAATACCCTTGGTTTACAAAATTACC
1 AAAATTACTAAAATACCCTTGATTTACAAAATTACC
77321306 AAAATACCCT
Statistics
Matches: 69, Mismatches: 21, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.37
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTTGATTTACAAAATTACCGTTTTACCCTCGATTTAC
Found at i:77321327 original size:27 final size:27
Alignment explanation
Indices: 77321256--77321561 Score: 172
Period size: 27 Copynumber: 11.3 Consensus size: 27
77321246 ATTACTGTTT
* ** *
77321256 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* **
77321283 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
**
77321310 TACCCTTGATCAGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* * * * *
77321337 TA-CCGTGGTCTGTAAAATTGCTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
*
77321363 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTGTAAAATTACCAAAA
* * *
77321390 TACCACTAG-TTTGTGAAATTACCGAAA
1 TACC-CTTGATTTGTAAAATTACCAAAA
**
77321417 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* ** * *
77321444 TACCCCTGATTTACAAAGTTA-TAGAAA
1 TACCCTTGATTTGTAAAATTACCA-AAA
* *
77321471 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTGT-AAAATTACCA-AAA
* * ** **
77321500 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* * * * *
77321527 TAGCCTTGGTTTTTAGATTTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
*
77321554 CACCCTTG
1 TACCCTTG
77321562 TAGGACGAAA
Statistics
Matches: 218, Mismatches: 52, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
26 24 0.11
27 167 0.77
28 8 0.04
29 19 0.09
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TACCCTTGATTTGTAAAATTACCAAAA
Found at i:77321409 original size:80 final size:80
Alignment explanation
Indices: 77321270--77321460 Score: 206
Period size: 80 Copynumber: 2.4 Consensus size: 80
77321260 CTCGATTTAC
* * *
77321270 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTAGATCAGTAAAATTACCAA
77321335 AATACCGTGGTCTGT
66 AATACCGTGGTCTGT
* ** ** * *
77321350 AAAATTGCTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTAG-TTTGTGAAATTACCG
1 AAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACC-CTAGATCAGTAAAATTACCA
* ** *
77321414 AAATACCCTCAATTTGT
65 AAATACCGT-GGTCTGT
*
77321431 AAAATTACCAAAATACCCCT-GATTTACAAA
1 AAAATTACTAAAATACCCCTAG-TTTACAAA
77321461 GTTATAGAAA
Statistics
Matches: 90, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
80 59 0.66
81 31 0.34
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (80 bp):
AAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTAGATCAGTAAAATTACCAA
AATACCGTGGTCTGT
Found at i:77321622 original size:27 final size:27
Alignment explanation
Indices: 77321579--77321644 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
77321569 AAATGACTAA
*
77321579 AATACCCCTATTA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
77321606 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
77321633 AATACCCCTGTA
1 AATACCCCTGTA
77321645 TCGTAAAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
26 3 0.09
27 29 0.88
28 1 0.03
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:77321650 original size:27 final size:27
Alignment explanation
Indices: 77321600--77321651 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
77321590 TAGGTAAAAA
*
77321600 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGCGTAAAGT
*
77321627 GACCGTAATA-CCCCTGTATCGTAAA
1 GACCGTAA-AGCCCCTGTAGCGTAAA
77321652 ATGATGAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGCGTAAAGT
Found at i:77322893 original size:31 final size:31
Alignment explanation
Indices: 77322850--77322924 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
77322840 ACGATTACTG
77322850 GGCCGAAGCCTTTTCATAAATCATATCACTA
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
* * *
77322881 GGCCAAAGCCTTTTCATAAATCATTTCACTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
77322912 GGCCGAAGCCTTT
1 GGCCGAAGCCTTT
77322925 ACTGTAAACG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTA
Found at i:77322995 original size:42 final size:42
Alignment explanation
Indices: 77322948--77323039 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
77322938 TGGCCCATAG
* ** *
77322948 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
77322990 GCCCATTTTAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
77323032 GCCCATTT
1 GCCCATTT
77323040 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:77324752 original size:40 final size:40
Alignment explanation
Indices: 77324669--77325011 Score: 485
Period size: 40 Copynumber: 8.6 Consensus size: 40
77324659 TTGAATGCTG
* * * * * *
77324669 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
77324709 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
77324749 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
77324789 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
77324829 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
77324869 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
77324909 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
77324949 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
77324988 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
77325012 TGAACGAGGA
Statistics
Matches: 281, Mismatches: 19, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.12
40 238 0.85
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:77339440 original size:40 final size:40
Alignment explanation
Indices: 77339392--77339659 Score: 473
Period size: 40 Copynumber: 6.7 Consensus size: 40
77339382 GCAAACACAT
* * *
77339392 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
77339432 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
77339472 TTGCCTTCGGGTCATAGCCCGGATATGTCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
77339512 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
77339552 TTGCCTTCGGGTCTTAGCCCGGGTATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
77339592 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
77339632 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
77339660 TCCAATGCTC
Statistics
Matches: 217, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:77342769 original size:35 final size:34
Alignment explanation
Indices: 77342720--77342803 Score: 118
Period size: 35 Copynumber: 2.5 Consensus size: 34
77342710 TGAGGCTATT
* *
77342720 ATGGGCTA-AGGCCCAAGTGCCACCGTTATTGTA
1 ATGGGCTATAGGCCCAAGTGCAACCATTATTGTA
*
77342753 ATGGGCTTATAGGCCCAAGTGCAACTATTATTGTA
1 ATGGGC-TATAGGCCCAAGTGCAACCATTATTGTA
77342788 ATGGGCT-TAGGCCCAA
1 ATGGGCTATAGGCCCAA
77342804 ATTGATGTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
33 15 0.33
34 3 0.07
35 28 0.61
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (34 bp):
ATGGGCTATAGGCCCAAGTGCAACCATTATTGTA
Found at i:77345055 original size:27 final size:26
Alignment explanation
Indices: 77345025--77345077 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
77345015 TACCAAAATA
*
77345025 CCCCTAAAGGGTAAAGTGACTATTTTG
1 CCCCTAAAGGGTAAA-TGACTAATTTG
**
77345052 CCCCTCGAGGGTAAATGACTAATTTG
1 CCCCTAAAGGGTAAATGACTAATTTG
77345078 TCTGAGATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CCCCTAAAGGGTAAATGACTAATTTG
Found at i:77346546 original size:175 final size:175
Alignment explanation
Indices: 77346255--77346612 Score: 671
Period size: 175 Copynumber: 2.0 Consensus size: 175
77346245 TCATAATTGG
* *
77346255 GCAAAATGACCATTTTGCCCTTAGACTTTCACAAAATGATCATTTTACCCCTAGACCCGAAAATT
1 GCAAAATGACCATTTTGCCCTTAAACTTTCACAAAATGATCATTTTACCCCTAGACCCAAAAATT
* * *
77346320 GATTTTTATCACATTTTCTCATTAATCAAGCCTAGCTGAATACTTTTTATACTAGGATCAGCCCA
66 GATTTTCATCACATTTTCTCATTAATCAAGCCTAGCTGAATACATTTTATACTAGGAGCAGCCCA
77346385 AAATTCTCATTATTTCACACATTTATCAACTATTTTACAACTTAT
131 AAATTCTCATTATTTCACACATTTATCAACTATTTTACAACTTAT
77346430 GCAAAATGACCATTTTGCCCTTAAACTTTCACAAAATGATCATTTTACCCCTAGACCCAAAAATT
1 GCAAAATGACCATTTTGCCCTTAAACTTTCACAAAATGATCATTTTACCCCTAGACCCAAAAATT
77346495 GATTTTCATCACATTTTCTCATTAATCAAGCCTAGCTGAATACATTTTATACTAGGAGCAGCCCA
66 GATTTTCATCACATTTTCTCATTAATCAAGCCTAGCTGAATACATTTTATACTAGGAGCAGCCCA
77346560 AAATTCTCATTATTTCACACATTTATCAACTATTTTACAACTTAT
131 AAATTCTCATTATTTCACACATTTATCAACTATTTTACAACTTAT
77346605 GCAAAATG
1 GCAAAATG
77346613 GTCCTTAGTT
Statistics
Matches: 178, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
175 178 1.00
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.35
Consensus pattern (175 bp):
GCAAAATGACCATTTTGCCCTTAAACTTTCACAAAATGATCATTTTACCCCTAGACCCAAAAATT
GATTTTCATCACATTTTCTCATTAATCAAGCCTAGCTGAATACATTTTATACTAGGAGCAGCCCA
AAATTCTCATTATTTCACACATTTATCAACTATTTTACAACTTAT
Found at i:77353016 original size:23 final size:23
Alignment explanation
Indices: 77352988--77353069 Score: 110
Period size: 23 Copynumber: 3.6 Consensus size: 23
77352978 CACGTTTACC
*
77352988 ACTATTAGCAGCTTTGCTGTATT
1 ACTATTAGCAGCTTTGCTGTGTT
* * *
77353011 ACTATTAGCAACTTTTCTATGTT
1 ACTATTAGCAGCTTTGCTGTGTT
*
77353034 ACTATTAGCAGCTTTGCTGCGTT
1 ACTATTAGCAGCTTTGCTGTGTT
*
77353057 ATTATTAGCAGCT
1 ACTATTAGCAGCT
77353070 ACGCTGCGAT
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 50 1.00
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.43
Consensus pattern (23 bp):
ACTATTAGCAGCTTTGCTGTGTT
Found at i:77353075 original size:23 final size:23
Alignment explanation
Indices: 77353031--77353082 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
77353021 ACTTTTCTAT
* **
77353031 GTTACTATTAGCAGCTTTGCTGC
1 GTTATTATTAGCAGCTACGCTGC
77353054 GTTATTATTAGCAGCTACGCTGC
1 GTTATTATTAGCAGCTACGCTGC
*
77353077 GATATT
1 GTTATT
77353083 GTTGAGTTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.38
Consensus pattern (23 bp):
GTTATTATTAGCAGCTACGCTGC
Found at i:77379225 original size:27 final size:27
Alignment explanation
Indices: 77379195--77379248 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
77379185 CAATTTGACA
77379195 TTTGGGTATAGTTAGTCTCAACATTTT
1 TTTGGGTATAGTTAGTCTCAACATTTT
*
77379222 TTTGGGTATAGTTAGTCTCGACATTTT
1 TTTGGGTATAGTTAGTCTCAACATTTT
77379249 GAGTATGGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.20, C:0.11, G:0.20, T:0.48
Consensus pattern (27 bp):
TTTGGGTATAGTTAGTCTCAACATTTT
Found at i:77379254 original size:24 final size:24
Alignment explanation
Indices: 77379191--77379254 Score: 76
Period size: 27 Copynumber: 2.6 Consensus size: 24
77379181 CTATCAATTT
77379191 GACA-TTTGGGTATAGTTAGTCTC
1 GACATTTTGGGTATAGTTAGTCTC
*
77379214 AACATTTTTTTGGGTATAGTTAGTCTC
1 GACA---TTTTGGGTATAGTTAGTCTC
*
77379241 GACATTTTGAGTAT
1 GACATTTTGGGTAT
77379255 GGCATGTGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
23 3 0.09
24 9 0.26
27 22 0.65
ACGTcount: A:0.23, C:0.11, G:0.22, T:0.44
Consensus pattern (24 bp):
GACATTTTGGGTATAGTTAGTCTC
Found at i:77382167 original size:55 final size:57
Alignment explanation
Indices: 77382047--77382169 Score: 196
Period size: 55 Copynumber: 2.2 Consensus size: 57
77382037 GAGATTGGCG
* *
77382047 CTAAGTGTGCGGGTTTAAATTGTATAGCACTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCA
*
77382104 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCA
*
77382159 CTGAGTGTGCG
1 CTAAGTGTGCG
77382170 GACTTAATAT
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
55 24 0.39
56 23 0.37
57 15 0.24
ACGTcount: A:0.27, C:0.11, G:0.28, T:0.34
Consensus pattern (57 bp):
CTAAGTGTGCGAGTTTAAATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:77382182 original size:27 final size:28
Alignment explanation
Indices: 77382047--77382169 Score: 194
Period size: 28 Copynumber: 4.4 Consensus size: 28
77382037 GAGATTGGCG
* * *
77382047 CTAAGTGTGCGGGTTTAAATTGTATAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
77382076 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
77382104 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
77382132 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
77382159 CTGAGTGTGCG
1 CTAAGTGTGCG
77382170 GACTTAATAT
Statistics
Matches: 90, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
27 24 0.27
28 51 0.57
29 15 0.17
ACGTcount: A:0.27, C:0.11, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:77399935 original size:47 final size:47
Alignment explanation
Indices: 77399864--77400603 Score: 1246
Period size: 47 Copynumber: 15.6 Consensus size: 47
77399854 CCCTTCGGGA
* * * * * *
77399864 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77399911 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77399958 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77400005 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77400052 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77400101 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77400150 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77400197 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77400244 CTTATCACATATATACACTTTCAGATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77400291 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77400338 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77400387 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77400434 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77400481 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77400530 CTTATCACATATATACACTTTCACATTCATTACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77400577 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
77400604 TATTCAAATA
Statistics
Matches: 662, Mismatches: 25, Indels: 12
0.95 0.04 0.02
Matches are distributed among these distances:
47 478 0.72
49 184 0.28
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:77400162 original size:143 final size:142
Alignment explanation
Indices: 77399864--77400603 Score: 1218
Period size: 143 Copynumber: 5.2 Consensus size: 142
77399854 CCCTTCGGGA
* * * * * * *
77399864 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATATAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
77399927 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
77399992 TCGGCCATTAGGC
130 TCGGCCATTAGGC
77400005 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
77400070 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
* *
77400135 CATTGGCCATTCGGC
128 CATCGGCCATTAGGC
*
77400150 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGCCTTATCAC--ATATATAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
77400213 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAGATTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
77400278 TCGGCCATTAGGC
130 TCGGCCATTAGGC
77400291 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
77400356 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
77400421 TCGGCCATTAGGC
130 TCGGCCATTAGGC
*
77400434 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
77400499 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATTACA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
77400564 TTGGCCATTAGGC
130 TCGGCCATTAGGC
77400577 CTTATCACATATATACACTTTCACATT
1 CTTATCACA-ATATACACTTTCACATT
77400604 TATTCAAATA
Statistics
Matches: 571, Mismatches: 22, Indels: 10
0.95 0.04 0.02
Matches are distributed among these distances:
141 138 0.24
143 342 0.60
145 91 0.16
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (142 bp):
CTTATCACAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:77406287 original size:26 final size:26
Alignment explanation
Indices: 77406219--77406289 Score: 67
Period size: 26 Copynumber: 2.8 Consensus size: 26
77406209 ATTCATAAAT
*
77406219 ATTTTGTATAAC-ATTTCATAAAACC
1 ATTTCGTATAACTATTTCATAAAACC
* * *
77406244 ATTTCATATATA-TTTTTCAT-ATACGC
1 ATTTCGTATA-ACTATTTCATAAAAC-C
77406270 ATTTCGTATAACTATTTCAT
1 ATTTCGTATAACTATTTCAT
77406290 CTAAACATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
25 12 0.33
26 24 0.67
ACGTcount: A:0.34, C:0.15, G:0.04, T:0.46
Consensus pattern (26 bp):
ATTTCGTATAACTATTTCATAAAACC
Found at i:77406747 original size:20 final size:20
Alignment explanation
Indices: 77406723--77406775 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
77406713 GAGTCATTGG
*
77406723 AGTGCAAACAGAGGGA-CAA
1 AGTGCAAATAGAGGGACCAA
*
77406742 ATGTGCAATTAGA-GGACCAA
1 A-GTGCAAATAGAGGGACCAA
77406762 AGTGCAAATAGAGG
1 AGTGCAAATAGAGG
77406776 CAATGAAGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.43, C:0.13, G:0.30, T:0.13
Consensus pattern (20 bp):
AGTGCAAATAGAGGGACCAA
Found at i:77409309 original size:3 final size:3
Alignment explanation
Indices: 77409301--77409347 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
77409291 ATGCTCTTTG
77409301 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
77409348 TTTTATAACA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:77412374 original size:16 final size:15
Alignment explanation
Indices: 77412344--77412382 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
77412334 TATACAAAGT
* *
77412344 TAATAATAATTAATA
1 TAATTATAATAAATA
77412359 TACATTATAATAAATA
1 TA-ATTATAATAAATA
77412375 TAATTATA
1 TAATTATA
77412383 TATTAGTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATTATAATAAATA
Found at i:77420228 original size:33 final size:34
Alignment explanation
Indices: 77420150--77420246 Score: 92
Period size: 34 Copynumber: 2.9 Consensus size: 34
77420140 ATATCAGTTA
* * * *
77420150 GGCCTTAGCCCATTGCAATAATAGTAACAGTCTG
1 GGCCTAAGCCCATTACAATAACAGTAACAGTCGG
* *
77420184 GGCCTAAGCCCATTACAGTAACAGTAGCAGT-GG
1 GGCCTAAGCCCATTACAATAACAGTAACAGTCGG
* *
77420217 GGCTTAAGCCCATAACAA-AATCAGT-ACAGT
1 GGCCTAAGCCCATTACAATAA-CAGTAACAGT
77420247 ATGCAATCAG
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
32 6 0.12
33 20 0.38
34 26 0.50
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.22
Consensus pattern (34 bp):
GGCCTAAGCCCATTACAATAACAGTAACAGTCGG
Found at i:77425383 original size:44 final size:42
Alignment explanation
Indices: 77425235--77425395 Score: 128
Period size: 43 Copynumber: 3.8 Consensus size: 42
77425225 GAAAAGCTCG
* * * *
77425235 TACAATGCCAACT-TCCAAGACGTGGTCTTACATGTAATCAAA
1 TACAATGCCAA-TGTCCCAGACATGGTCTTACAGGAAATCAAA
* * ** * * *
77425277 TATCGATGGCTCTATCCCAGACAAGGTCTTACATGAAATCAAA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACAGGAAATCAAA
* *
77425320 TACAATGCCGATGTCCCAGACATGGTCTTACAGGTAAATCTCGAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACAGG-AAA--TCAAA
**
77425365 T-CAATGCCAATGTCCCAGATGTGGTCTTACA
1 TACAATGCCAATGTCCCAGACATGGTCTTACA
77425396 CAAAATCACA
Statistics
Matches: 95, Mismatches: 19, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
42 28 0.29
43 35 0.37
44 27 0.28
45 5 0.05
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACAGGAAATCAAA
Found at i:77428232 original size:40 final size:41
Alignment explanation
Indices: 77428139--77428244 Score: 160
Period size: 40 Copynumber: 2.6 Consensus size: 41
77428129 TGCACACCTT
*
77428139 GCACACTAAGTGCCAATATATAGCCGAAGCTATTTTAATCTC
1 GCACACTAAGTGCC-ATATATAGCCGAAGCTATCTTAATCTC
* * *
77428181 GCACACTAAGTGCCATACATAGCTGAAGCTATCTTGA-CTC
1 GCACACTAAGTGCCATATATAGCCGAAGCTATCTTAATCTC
77428221 GCACACTAAGTGCCATATATAGCC
1 GCACACTAAGTGCCATATATAGCC
77428245 AAATTGACGT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
40 25 0.43
41 19 0.33
42 14 0.24
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (41 bp):
GCACACTAAGTGCCATATATAGCCGAAGCTATCTTAATCTC
Found at i:77431188 original size:39 final size:40
Alignment explanation
Indices: 77431143--77431274 Score: 176
Period size: 40 Copynumber: 3.3 Consensus size: 40
77431133 GCTCCTCGTT
* * *
77431143 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
77431183 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
77431222 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
77431262 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
77431275 ATCTTAGTCC
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 34 0.43
40 46 0.57
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:77439130 original size:40 final size:40
Alignment explanation
Indices: 77439032--77439201 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
77439022 TCCTCGTTCA
* * * *
77439032 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
77439071 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
77439111 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * * * *
77439151 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTTGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
77439191 AAGGCCTTCGG
1 AATGCCTTCGG
77439202 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 34 0.29
40 84 0.71
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:77439133 original size:79 final size:80
Alignment explanation
Indices: 77439032--77439178 Score: 233
Period size: 79 Copynumber: 1.9 Consensus size: 80
77439022 TCCTCGTTCA
* * *
77439032 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACGAATGCCTTCGGGACATAACCCGGAT
77439096 TTAACAACTCGCACG
66 TTAACAACTCGCACG
* * *
77439111 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACGAATGCCTTCGGGACATAACCCGGAT
77439176 TTA
66 TTA
77439179 GTATCTTGCA
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 34 0.56
80 27 0.44
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACGAATGCCTTCGGGACATAACCCGGAT
TTAACAACTCGCACG
Found at i:77439214 original size:40 final size:39
Alignment explanation
Indices: 77439030--77439254 Score: 191
Period size: 40 Copynumber: 5.6 Consensus size: 39
77439020 GCTCCTCGTT
* * * **
77439030 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAA-GCCTTCGGGACTTAGCCCGGATTTAATAACTTGCA
* * * * *
77439070 CAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAAGCCTTCGGGACTTAGCCCGGATTTAATAACTTGCA
* * *
77439109 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 C-AAAGCCTTCGGGACTTAGCCCGGATTTAATAACTTGCA
* * * *
77439149 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTTGCA
1 C-AAAGCCTTCGGGACTTAGCCCGGATTTAATAACTTGCA
* * * **
77439189 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCGCTTAGCA
1 CAAA-GCCTTCGGGA-CTTAGCCCGGATTTAATAACTT-GCA
77439230 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
77439255 CAGCATTCAA
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 36 0.22
40 115 0.71
41 10 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAATAACTTGCA
Found at i:77443574 original size:40 final size:40
Alignment explanation
Indices: 77443515--77443732 Score: 266
Period size: 40 Copynumber: 5.5 Consensus size: 40
77443505 CGGATGATAA
* * *
77443515 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
77443555 CTGGGCTAAGTCCCGAAGGCA-TTGTTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTATA-T
77443595 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
77443635 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
77443675 CCGAGCTAAGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
77443715 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
77443733 TACTTAGTTT
Statistics
Matches: 160, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
39 18 0.11
40 138 0.86
41 4 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:77449274 original size:90 final size:92
Alignment explanation
Indices: 77449103--77449303 Score: 289
Period size: 90 Copynumber: 2.2 Consensus size: 92
77449093 CATATAACAA
** * * * *
77449103 TACACTGGCTCTCATAAACTGGTGCCGATGCCATGTCCCGACATGGTCTTACATTGACTCATGTC
1 TACACTGGCTCTCATAAACCAGTGCCGATGCCA-GT--CGACATAGTCTTACACTGACACATATC
77449168 GAGGCCGATGCCATGTCCCAGACATGGTCT
63 GAGGCCGATGCCATGTCCCAGACATGGTCT
* *
77449198 TACACTGGCTCTCATAAACCAGTGTCGATGCCA-T-GACATAGTCTTGCACTGACACATATCGAG
1 TACACTGGCTCTCATAAACCAGTGCCGATGCCAGTCGACATAGTCTTACACTGACACATATCGAG
77449261 GCCGATGCCATGTCCCAGACATGGTCT
66 GCCGATGCCATGTCCCAGACATGGTCT
77449288 TACACTGGCTCTCATA
1 TACACTGGCTCTCATA
77449304 TCACCATGGT
Statistics
Matches: 98, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
90 67 0.68
93 1 0.01
95 30 0.31
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (92 bp):
TACACTGGCTCTCATAAACCAGTGCCGATGCCAGTCGACATAGTCTTACACTGACACATATCGAG
GCCGATGCCATGTCCCAGACATGGTCT
Found at i:77449288 original size:46 final size:46
Alignment explanation
Indices: 77449126--77449294 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
77449116 ATAAACTGGT
* *
77449126 GCCGATGCCATGTCCC-GACATGGTCTTACATTGACTCATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATATCGAG
* *
77449171 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCAT--AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCAT-ATCGAG
* * * * *
77449215 ACC-AGTGTCGATG--CCATGACATAGTCTTGCACTGACACATATCGAG
1 GCCGA-TG-CCATGTCCCA-GACATGGTCTTACACTGACTCATATCGAG
77449261 GCCGATGCCATGTCCCAGACATGGTCTTACACTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTG
77449295 GCTCTCATAT
Statistics
Matches: 98, Mismatches: 15, Indels: 21
0.73 0.11 0.16
Matches are distributed among these distances:
43 4 0.04
44 24 0.24
45 26 0.27
46 40 0.41
47 4 0.04
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATATCGAG
Found at i:77461100 original size:20 final size:19
Alignment explanation
Indices: 77461055--77461092 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
77461045 CATCCAAACA
77461055 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
77461074 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
77461093 TTCAGAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:77461103 original size:14 final size:14
Alignment explanation
Indices: 77461084--77461121 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
77461074 CCAGAAAAGT
*
77461084 AAATCATTTTTCAG
1 AAATCATTTTCCAG
77461098 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
77461112 AAAACATTTT
1 AAATCATTTT
77461122 ACTAGCAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.39, C:0.16, G:0.05, T:0.39
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:77467768 original size:68 final size:67
Alignment explanation
Indices: 77467696--77467845 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
77467686 CATCATGTGT
* * * *
77467696 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
77467758 ATGTAG
62 ATGTAG
** * *
77467764 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
77467829 AG
66 AG
77467831 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
77467846 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:77467801 original size:64 final size:64
Alignment explanation
Indices: 77467720--77467903 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
77467710 AGACATTATG
* *
77467720 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
77467784 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
77467849 AA
63 AA
* * * *
77467851 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
77467904 CGAACTATTG
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:77472248 original size:64 final size:64
Alignment explanation
Indices: 77472167--77472351 Score: 196
Period size: 67 Copynumber: 2.9 Consensus size: 64
77472157 AGACATTATG
* *
77472167 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
77472231 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
77472296 AA
63 AA
* * * *
77472298 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGCT
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCT
77472352 GAACTATTGA
Statistics
Matches: 99, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 20 0.20
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:77474354 original size:34 final size:33
Alignment explanation
Indices: 77474258--77474359 Score: 109
Period size: 34 Copynumber: 3.0 Consensus size: 33
77474248 ATGCATTTCC
*
77474258 GATACTGTACTGAAATGGGCTAAGGCCCACACT
1 GATACTGTACTGATATGGGCTAAGGCCCACACT
* *
77474291 AATACTGTTACT-ATATTAGGCTAAGGCCCACACT
1 GATACTG-TACTGATA-TGGGCTAAGGCCCACACT
* *
77474325 GATACTGCGACTGATATGGGCTTAA-GCCCAAACT
1 GATACTG-TACTGATATGGGC-TAAGGCCCACACT
77474359 G
1 G
77474360 TTCAACACTG
Statistics
Matches: 57, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
33 8 0.14
34 43 0.75
35 6 0.11
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.25
Consensus pattern (33 bp):
GATACTGTACTGATATGGGCTAAGGCCCACACT
Found at i:77497508 original size:12 final size:12
Alignment explanation
Indices: 77497491--77497520 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
77497481 AAAGAAAAAG
77497491 TTAGAATCTAGA
1 TTAGAATCTAGA
77497503 TTAGAATCTAGA
1 TTAGAATCTAGA
77497515 TT-GAAT
1 TTAGAAT
77497521 TGAAAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.22
12 14 0.78
ACGTcount: A:0.40, C:0.07, G:0.17, T:0.37
Consensus pattern (12 bp):
TTAGAATCTAGA
Found at i:77505159 original size:33 final size:34
Alignment explanation
Indices: 77505117--77505191 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 34
77505107 GTATGCATTT
77505117 CTGATACTG-TACT-TAAATGGGCTAAGGCCCACA
1 CTGATACTGTTACTGT-AATGGGCTAAGGCCCACA
* * *
77505150 CTGATACTGTTACTGTATTGGGTTAAGGCTCACA
1 CTGATACTGTTACTGTAATGGGCTAAGGCCCACA
77505184 CTGATACT
1 CTGATACT
77505192 ACGACTGATA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
33 9 0.24
34 27 0.73
35 1 0.03
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (34 bp):
CTGATACTGTTACTGTAATGGGCTAAGGCCCACA
Found at i:77512750 original size:15 final size:15
Alignment explanation
Indices: 77512726--77512757 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
77512716 TCGTAAAGGA
*
77512726 CCGATTTCGTGACAC
1 CCGATGTCGTGACAC
77512741 CCGATGTCGTGACAC
1 CCGATGTCGTGACAC
77512756 CC
1 CC
77512758 TAGTGCCTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.38, G:0.22, T:0.22
Consensus pattern (15 bp):
CCGATGTCGTGACAC
Found at i:77513577 original size:18 final size:18
Alignment explanation
Indices: 77513554--77513588 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
77513544 CAAGAATGGT
77513554 AAGCATCAAAATAGTTTC
1 AAGCATCAAAATAGTTTC
*
77513572 AAGCATGAAAATAGTTT
1 AAGCATCAAAATAGTTT
77513589 GGCACATCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (18 bp):
AAGCATCAAAATAGTTTC
Found at i:77519505 original size:26 final size:25
Alignment explanation
Indices: 77519427--77519519 Score: 87
Period size: 25 Copynumber: 3.6 Consensus size: 25
77519417 AATGATAAGG
* * *
77519427 ATAATATAAAAAATACATACATGAA
1 ATAATATAAAATATATATATATGAA
* ***
77519452 ATAGTATAAAATATATATATAACTA
1 ATAATATAAAATATATATATATGAA
*
77519477 ATAATATACATATATATATATATGAA
1 ATAATATA-AAATATATATATATGAA
*
77519503 ATAACAATAAAATATAT
1 ATAA-TATAAAATATAT
77519520 GAATAGTATG
Statistics
Matches: 52, Mismatches: 14, Indels: 3
0.75 0.20 0.04
Matches are distributed among these distances:
25 25 0.48
26 24 0.46
27 3 0.06
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.32
Consensus pattern (25 bp):
ATAATATAAAATATATATATATGAA
Found at i:77519634 original size:26 final size:26
Alignment explanation
Indices: 77519544--77519634 Score: 82
Period size: 26 Copynumber: 3.5 Consensus size: 26
77519534 TTACAAATAT
* *
77519544 ATACATAATATA-ATTATTTAAGAAAA
1 ATACATAATATATAATATATAA-AAAA
* *
77519570 ATACATATATATATAA-ACA-ATAAAAT
1 ATACATA-ATATATAATATATA-AAAAA
77519596 ATACA-AATAATATAATATATAAAAAA
1 ATACATAAT-ATATAATATATAAAAAA
77519622 ATACATAATATAT
1 ATACATAATATAT
77519635 GAAAAATATA
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
24 2 0.04
25 7 0.13
26 31 0.60
27 11 0.21
28 1 0.02
ACGTcount: A:0.62, C:0.05, G:0.01, T:0.32
Consensus pattern (26 bp):
ATACATAATATATAATATATAAAAAA
Found at i:77519643 original size:35 final size:32
Alignment explanation
Indices: 77519564--77519657 Score: 98
Period size: 35 Copynumber: 2.8 Consensus size: 32
77519554 TAATTATTTA
* *
77519564 AGAAAAATACATATATATATAAACAATAAAATAT
1 AGAAAAATATA-ATATATA-AAAAAATAAAATAT
*
77519598 ACAAATAATATAATATATAAAAAAATACATAATAT
1 AGAAA-AATATAATATATAAAAAAATA-A-AATAT
*
77519633 ATGAAAAATATAATATTTAAAAAAA
1 A-GAAAAATATAATATATAAAAAAA
77519658 ACTAAATAAG
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
33 7 0.14
34 12 0.24
35 29 0.57
36 3 0.06
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (32 bp):
AGAAAAATATAATATATAAAAAAATAAAATAT
Found at i:77519647 original size:16 final size:16
Alignment explanation
Indices: 77519574--77519653 Score: 65
Period size: 16 Copynumber: 4.9 Consensus size: 16
77519564 AGAAAAATAC
77519574 ATAT-ATATATAAACA
1 ATATAATATATAAACA
* * *
77519589 ATAAAATATACAAATA
1 ATATAATATATAAACA
*
77519605 ATATAATATATAAAAAA
1 ATATAATATAT-AAACA
77519622 ATACATAATATATGAAA-A
1 AT--ATAATATAT-AAACA
*
77519640 ATATAATATTTAAA
1 ATATAATATATAAA
77519654 AAAAACTAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
15 6 0.11
16 26 0.49
17 6 0.11
18 3 0.06
19 12 0.23
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.31
Consensus pattern (16 bp):
ATATAATATATAAACA
Found at i:77519648 original size:51 final size:54
Alignment explanation
Indices: 77519538--77519648 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 54
77519528 TGATACTTAC
* * *
77519538 AAATATATACATAATATAATTATTTAAGAAAAATACATATATATATAAACAATA
1 AAATATACAAATAATATAATTATATAAGAAAAATACATATATATATAAACAATA
77519592 AAATATACAAATAATATAA-TATATAA-AAAAATACATA-ATATATGAAA-AATA
1 AAATATACAAATAATATAATTATATAAGAAAAATACATATATATAT-AAACAATA
*
77519643 TAATAT
1 AAATAT
77519649 TTAAAAAAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
51 15 0.29
52 14 0.27
53 6 0.12
54 17 0.33
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.32
Consensus pattern (54 bp):
AAATATACAAATAATATAATTATATAAGAAAAATACATATATATATAAACAATA
Found at i:77519655 original size:16 final size:16
Alignment explanation
Indices: 77519550--77519656 Score: 54
Period size: 16 Copynumber: 6.1 Consensus size: 16
77519540 ATATATACAT
77519550 AATATAATTATTTAAGAA
1 AATATAA-TATTTAA-AA
77519568 AA-ATACATATATATATAAA
1 AATATA-ATAT-T-TA-AAA
* ** *
77519587 CAATAAAATATACAAAT
1 -AATATAATATTTAAAA
*
77519604 AATATAATATATAAAAA
1 AATATAATAT-TTAAAA
* *
77519621 AATACATAATATATGAAA
1 AAT--ATAATATTTAAAA
77519639 AATATAATATTTAAAA
1 AATATAATATTTAAAA
77519655 AA
1 AA
77519657 AACTAAATAA
Statistics
Matches: 67, Mismatches: 13, Indels: 20
0.67 0.13 0.20
Matches are distributed among these distances:
16 22 0.33
17 14 0.21
18 11 0.16
19 11 0.16
20 7 0.10
21 2 0.03
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.31
Consensus pattern (16 bp):
AATATAATATTTAAAA
Found at i:77519679 original size:37 final size:35
Alignment explanation
Indices: 77519604--77519677 Score: 85
Period size: 35 Copynumber: 2.0 Consensus size: 35
77519594 ATATACAAAT
* *
77519604 AATATAATATATAAAAAAATACATAATATATGAAA
1 AATATAATATATAAAAAAATAAATAAGATATGAAA
* *
77519639 AATATAATATTTAAAAAAAACTAAATAAGAGTATTAAA
1 AATATAATATAT-AAAAAAA-TAAATAAGA-TATGAAA
77519677 A
1 A
77519678 TAAAAAAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
35 11 0.34
36 7 0.22
37 7 0.22
38 7 0.22
ACGTcount: A:0.65, C:0.03, G:0.04, T:0.28
Consensus pattern (35 bp):
AATATAATATATAAAAAAATAAATAAGATATGAAA
Found at i:77520181 original size:3 final size:3
Alignment explanation
Indices: 77520173--77520276 Score: 61
Period size: 3 Copynumber: 34.0 Consensus size: 3
77520163 AATATTATAT
* *
77520173 ATA ATA ATA ATA CTA GA-A ATA ATA ATA CATTA A-A ATA ATA ATA TTTA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA -A-TA ATA ATA ATA ATA -ATA
** * * *
77520220 ATA ACC AGA ATA TTA ATA ATA ACA ATA ATA ATA ATA GA-A ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
* *
77520265 GTA TTA ATA ATA
1 ATA ATA ATA ATA
77520277 TTAGGAATGA
Statistics
Matches: 77, Mismatches: 16, Indels: 16
0.71 0.15 0.15
Matches are distributed among these distances:
2 4 0.05
3 66 0.86
4 5 0.06
5 2 0.03
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.32
Consensus pattern (3 bp):
ATA
Done.