Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 236 of 344
Found at i:78115469 original size:7 final size:7
Alignment explanation
Indices: 78115420--78115460 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
78115410 AAATTCCCTA
78115420 TTTCTT-
1 TTTCTTC
78115426 TTTCTTC
1 TTTCTTC
78115433 TTTCTT-
1 TTTCTTC
78115439 TCTTCTTTC
1 T-TTC-TTC
78115448 TTTCTTC
1 TTTCTTC
78115455 TTTCTT
1 TTTCTT
78115461 TCTTCTTTCC
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
6 7 0.23
7 18 0.58
8 5 0.16
9 1 0.03
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTCTTC
Found at i:78135890 original size:43 final size:43
Alignment explanation
Indices: 78135838--78136006 Score: 178
Period size: 43 Copynumber: 3.9 Consensus size: 43
78135828 ATAGGATTCT
* *
78135838 GATATGTGATTTCGTGTAAGACCACGTCTGGGAAATTGGCATC
1 GATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCATC
* * *
78135881 GATTTGTGATTTGCATGTAAGACCATGTCTGGGACATCGGCATC
1 GATATGTGATTT-CATGTAAGACCACGTCTGGGACATTGGCATC
* * ** * * **
78135925 G-TATATGAGTTCATGTAAGACCTTGTCTAGGACAGTGGTGTC
1 GATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCATC
* * *
78135967 GATATGTGATTACATGTAAGACCACGTTTGGGACGTTGGC
1 GATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGC
78136007 GTTGTATGAA
Statistics
Matches: 100, Mismatches: 24, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
42 26 0.26
43 46 0.46
44 28 0.28
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.31
Consensus pattern (43 bp):
GATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCATC
Found at i:78143337 original size:43 final size:42
Alignment explanation
Indices: 78143281--78143437 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 42
78143271 ATATTGTACA
*
78143281 ATGCCAACT-TCCTAGATGTGGTCTTACATGTAATCACATGTCG
1 ATGCCAACTGTCCTAGACGTGGTCTTACATG-AATCACAT-TCG
*
78143324 ATGCC-ACTGTCCTAGACAGT-GTCTTACACGAATCACAATTACG
1 ATGCCAACTGTCCTAGAC-GTGGTCTTACATGAATCAC-ATT-CG
* * *
78143367 ATGCCAA-TGTCCCAGACATGGTCTTA-ATCGAAATCACATATCA
1 ATGCCAACTGTCCTAGACGTGGTCTTACAT-G-AATCACAT-TCG
78143410 ATGCCAAC-GTCCTAGACGTGGTCTTACA
1 ATGCCAACTGTCCTAGACGTGGTCTTACA
78143438 CGAGAACACA
Statistics
Matches: 95, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
42 12 0.13
43 72 0.76
44 11 0.12
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (42 bp):
ATGCCAACTGTCCTAGACGTGGTCTTACATGAATCACATTCG
Found at i:78143994 original size:28 final size:26
Alignment explanation
Indices: 78143960--78144011 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
78143950 CACAATTCAT
*
78143960 TTATTTTACATTTTAGTCCCTCAATTTA
1 TTATTTTACAATTTAG-CCCT-AATTTA
*
78143988 TTATTTTGCAATTTAGCCCTAATT
1 TTATTTTACAATTTAGCCCTAATT
78144012 ACTCAAATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 4 0.18
28 14 0.64
ACGTcount: A:0.25, C:0.17, G:0.06, T:0.52
Consensus pattern (26 bp):
TTATTTTACAATTTAGCCCTAATTTA
Found at i:78144209 original size:17 final size:18
Alignment explanation
Indices: 78144178--78144212 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
78144168 GAAGCAACGA
78144178 TATCAAAAACGTAAAAAT
1 TATCAAAAACGTAAAAAT
78144196 TATCAAAAAC-TAAAAAT
1 TATCAAAAACGTAAAAAT
78144213 AAAACATACC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.63, C:0.11, G:0.03, T:0.23
Consensus pattern (18 bp):
TATCAAAAACGTAAAAAT
Found at i:78149405 original size:31 final size:31
Alignment explanation
Indices: 78149360--78149514 Score: 240
Period size: 31 Copynumber: 5.0 Consensus size: 31
78149350 TTAGTCTTGA
78149360 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
78149390 CATATCATTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* * *
78149421 CAAATCACTAGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
78149452 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
78149483 CATATCATTGGGCCGAAGCCTTTACAGTAAAT
1 CATATCACTGGGCCGAAGCCTTTTCA-TAAAT
78149515 GGTTTGGCCC
Statistics
Matches: 113, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
30 5 0.04
31 103 0.91
32 5 0.04
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:78149576 original size:42 final size:42
Alignment explanation
Indices: 78149529--78149620 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
78149519 TGGCCCTTAG
* **
78149529 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGGATGTATGCAA
*
78149571 GCCCATTTCAATATCACATGAAATACCAATGTATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGGATGTATGCAA
78149613 GCCCATTT
1 GCCCATTT
78149621 GGGGGGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGGATGTATGCAA
Found at i:78150742 original size:27 final size:27
Alignment explanation
Indices: 78150712--78150797 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
78150702 GTAAATCTAC
78150712 AAACCAAGGGTATTTCGT-TAATTTTGT
1 AAACCAAGGGTATTTC-TATAATTTTGT
*
78150739 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* * *
78150765 AGAAAGTCAAGGGTATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
78150795 AAA
1 AAA
78150798 TTAGGGGTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
26 2 0.04
27 22 0.45
28 6 0.12
29 18 0.37
30 1 0.02
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:78150880 original size:27 final size:27
Alignment explanation
Indices: 78150802--78151202 Score: 180
Period size: 27 Copynumber: 14.9 Consensus size: 27
78150792 TGTAAATTAG
* *
78150802 GGGTATTTTGGTAATTTTACAAA-CCA
1 GGGTATTTTGGTAATTTTATAAATCGA
* *
78150828 GGGGTATTTTGGAAATTTTCCT-AATCGA
1 -GGGTATTTTGGTAATTTT-ATAAATCGA
* *
78150856 AGGTATTTTGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** * *
78150883 GGGTAAAATGATAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
**** * * *
78150910 GGGTAAAACGGTAATTCTAGAAATCAA
1 GGGTATTTTGGTAATTTTATAAATCGA
***** * **
78150937 GGGTAAAACAGTAATTCTAGGAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
**** *
78150964 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
***** * *
78150991 GGGTAAAACAGTAATTCTATAAATTGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** *
78151018 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * * *
78151045 GGGCATTTTAGTAATTTTA-CAATCAA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * *
78151071 TGGTATTTTGGTAATTTTATAAACCGG
1 GGGTATTTTGGTAATTTTATAAATCGA
* * *
78151098 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* ** *
78151125 AGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
** * *
78151152 GGGTATTTCAGTAATTTTACAAA-CTAA
1 GGGTATTTTGGTAATTTTATAAATC-GA
* *
78151179 GGTTATTTCGGTAATTTTAGTAAA
1 GGGTATTTTGGTAATTTTA-TAAA
78151203 CTAAAGTATT
Statistics
Matches: 304, Mismatches: 64, Indels: 11
0.80 0.17 0.03
Matches are distributed among these distances:
26 23 0.08
27 276 0.91
28 5 0.02
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAATCGA
Found at i:78150951 original size:81 final size:81
Alignment explanation
Indices: 78150866--78151047 Score: 222
Period size: 81 Copynumber: 2.2 Consensus size: 81
78150856 AGGTATTTTG
* *
78150866 GTAATTTTGTAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTAGA
1 GTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTAGA
78150931 AATCAAGGGTAAAACA
66 AATCAAGGGTAAAACA
* * * * * *
78150947 GTAATTCTAG-GAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTAT
1 GTAATT-TTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTAG
** **
78151011 AAATTGAGGGTAAAATG
65 AAATCAAGGGTAAAACA
* *
78151028 GTAATTCTATAAATCGAGGG
1 GTAATTTTGTAAATCGAGGG
78151048 CATTTTAGTA
Statistics
Matches: 83, Mismatches: 16, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
81 81 0.98
82 2 0.02
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTAGA
AATCAAGGGTAAAACA
Found at i:78151060 original size:54 final size:54
Alignment explanation
Indices: 78150865--78151047 Score: 251
Period size: 54 Copynumber: 3.4 Consensus size: 54
78150855 AAGGTATTTT
* * *
78150865 GGTAATTTTGTAAATCGAGGGTAAAA-TGATAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAAACAG-TAATTCTATAAATCGAGGGTAAAAC
* * **
78150919 GGTAATTCTAGAAATCAAGGGTAAAACAGTAATTCTAGGAATCGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAC
* * * *
78150973 GGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAAT
1 GGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAC
78151027 GGTAATTCTATAAATCGAGGG
1 GGTAATTCTATAAATCGAGGG
78151048 CATTTTAGTA
Statistics
Matches: 111, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
54 110 0.99
55 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (54 bp):
GGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAC
Found at i:78153433 original size:31 final size:31
Alignment explanation
Indices: 78153388--78153541 Score: 231
Period size: 31 Copynumber: 5.0 Consensus size: 31
78153378 TTAGTCTTGA
78153388 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
78153418 CATATCATTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* * *
78153449 CAAATCACTAGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
78153480 CATATCACTGGGCCGAAGCC-TTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
78153510 CATATCATTGGGCCGAAGCCTTTACAGTAAAT
1 CATATCACTGGGCCGAAGCCTTTTCA-TAAAT
78153542 GGTTTGGCCC
Statistics
Matches: 111, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
30 33 0.30
31 73 0.66
32 5 0.05
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:78153603 original size:42 final size:42
Alignment explanation
Indices: 78153556--78153647 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
78153546 TGGCCCTTAG
* **
78153556 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGGATGTATGCAA
*
78153598 GCCCATTTCAATATCACATGAAATACCAATGTATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGGATGTATGCAA
78153640 GCCCATTT
1 GCCCATTT
78153648 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGGATGTATGCAA
Found at i:78154684 original size:27 final size:27
Alignment explanation
Indices: 78154622--78154699 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
78154612 GGGCATATTC
78154622 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
78154649 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
78154676 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
78154700 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:78154770 original size:27 final size:27
Alignment explanation
Indices: 78154740--78154864 Score: 96
Period size: 27 Copynumber: 4.6 Consensus size: 27
78154730 GTAAATCTAC
78154740 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
*
78154767 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
** *
78154793 AGAAAGTTAAGGGTATTTCTATAACTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
* **
78154823 AAATC-AGAGGTATTT-TGATAATTTTAC
1 AAACCAAG-GGTATTTCT-ATAATTTTGT
*
78154850 AAACCAGGGGTATTT
1 AAACCAAGGGTATTT
78154865 TGGTAATTTT
Statistics
Matches: 79, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
26 4 0.05
27 48 0.61
28 8 0.10
29 18 0.23
30 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:78154865 original size:27 final size:27
Alignment explanation
Indices: 78154831--78154900 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
78154821 GTAAATCAGA
*
78154831 GGTATTTTGATAATTTTACAAACC-AGG
1 GGTATTTTGGTAATTTTACAAACCGA-G
* * *
78154858 GGTATTTTGGTAATTTTCCTAATCGAG
1 GGTATTTTGGTAATTTTACAAACCGAG
78154885 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
78154901 GTAAATTGAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 37 0.97
28 1 0.03
ACGTcount: A:0.26, C:0.09, G:0.21, T:0.44
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCGAG
Found at i:78154940 original size:27 final size:27
Alignment explanation
Indices: 78154893--78155076 Score: 221
Period size: 27 Copynumber: 6.9 Consensus size: 27
78154883 AGGGTATTTT
* *
78154893 GGTAATT-TGTAAATTGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* *
78154919 GGTAATTCTATAAATCGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* *
78154946 GATAATT-TCGTAAATCGTGGGTAAAAC
1 GGTAATTCT-GTAAATCGAGGGTAAAAC
*
78154973 GGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* *
78155000 GGTAATTCTATAAA-CTGAGGCTAAAAC
1 GGTAATTCTGTAAATC-GAGGGTAAAAC
*
78155027 GGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
**
78155054 GACAATTCTGTAAATCGAGGGTA
1 GGTAATTCTGTAAATCGAGGGTA
78155077 CTTTAGTAAT
Statistics
Matches: 136, Mismatches: 17, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
26 9 0.07
27 125 0.92
28 2 0.01
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (27 bp):
GGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:78155009 original size:81 final size:81
Alignment explanation
Indices: 78154893--78155076 Score: 255
Period size: 81 Copynumber: 2.3 Consensus size: 81
78154883 AGGGTATTTT
* * * *
78154893 GGTAA-TTTGTAAATTGAGGGTAAAATGGTAATTCTATAAA-TCGAGGGTAAAATGATAATTTCG
1 GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAACT-GAGGCTAAAACGATAATTTCG
*
78154956 TAAATCGTGGGTAAAAC
65 TAAATCGAGGGTAAAAC
* *
78154973 GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAACTGAGGCTAAAACGGTAATTTTGT
1 GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAACTGAGGCTAAAACGATAATTTCGT
78155038 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
** *
78155054 GACAATTCTGTAAATCGAGGGTA
1 GGTAATTTTGTAAATCGAGGGTA
78155077 CTTTAGTAAT
Statistics
Matches: 92, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
80 5 0.05
81 86 0.93
82 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (81 bp):
GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAACTGAGGCTAAAACGATAATTTCGT
AAATCGAGGGTAAAAC
Found at i:78155132 original size:26 final size:27
Alignment explanation
Indices: 78155065--78155251 Score: 144
Period size: 27 Copynumber: 7.0 Consensus size: 27
78155055 ACAATTCTGT
* *
78155065 AAATCGAGGGTACTTTAGTAATTTTAC
1 AAATTGAGGGTATTTTAGTAATTTTAC
*
78155092 AAATTGAGGGCATTTTAGTAATTTTAC
1 AAATTGAGGGTATTTTAGTAATTTTAC
* * *
78155119 -AATTGATGGTA-TTTCGATAATTTTAT
1 AAATTGAGGGTATTTTAG-TAATTTTAC
** * * * *
78155145 AAACCGGGGGTACTTTGGTAATTTTGC
1 AAATTGAGGGTATTTTAGTAATTTTAC
* * * * *
78155172 AAGTCGAAGGTATTTCAATAATTTTAC
1 AAATTGAGGGTATTTTAGTAATTTTAC
* * *
78155199 AAATCGAGGGTATTTCAATAATTTTAC
1 AAATTGAGGGTATTTTAGTAATTTTAC
* * *
78155226 AAACTAAGGGTATTTTGGTAATTTTA
1 AAATTGAGGGTATTTTAGTAATTTTA
78155252 GTAAACTAAA
Statistics
Matches: 126, Mismatches: 31, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
25 4 0.03
26 17 0.13
27 101 0.80
28 4 0.03
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
AAATTGAGGGTATTTTAGTAATTTTAC
Found at i:78155210 original size:54 final size:53
Alignment explanation
Indices: 78155066--78155227 Score: 157
Period size: 53 Copynumber: 3.0 Consensus size: 53
78155056 CAATTCTGTA
* * * * *
78155066 AATCGAGGGTACTTT-AGTAATTTTACAAATTGAGGGCATTTTAGTAATTTTAC
1 AATCGAAGGTA-TTTCAATAATTTTACAAATCGAGGGTACTTTAGTAATTTTAC
* * * * * * * *
78155119 AATTGATGGTATTTCGATAATTTTATAAACCGGGGGTACTTTGGTAATTTTGC
1 AATCGAAGGTATTTCAATAATTTTACAAATCGAGGGTACTTTAGTAATTTTAC
*
78155172 AAGTCGAAGGTATTTCAATAATTTTACAAATCGAGGGTA-TTTCAATAATTTTAC
1 AA-TCGAAGGTATTTCAATAATTTTACAAATCGAGGGTACTTT-AGTAATTTTAC
78155226 AA
1 AA
78155228 ACTAAGGGTA
Statistics
Matches: 85, Mismatches: 21, Indels: 5
0.77 0.19 0.05
Matches are distributed among these distances:
52 3 0.04
53 42 0.49
54 40 0.47
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (53 bp):
AATCGAAGGTATTTCAATAATTTTACAAATCGAGGGTACTTTAGTAATTTTAC
Found at i:78157263 original size:43 final size:43
Alignment explanation
Indices: 78157115--78157272 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 43
78157105 ATGTGTTATT
* *
78157115 GTGTAAGACCACGTCTGGGACGTTGGCATTGACT-TATGATTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTAC
* * ** *
78157159 GTGTAAGACCATGTCTAGGATATTGGCATCG-TATTTGATTTC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTAC
* *
78157201 GTGTAATACC-CTATCTGGGACAG-TGGCATCGATATTTGATTAC
1 GTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTAC
* *
78157244 ATGTAAGACCACGTTTGGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACGTTGGCAT
78157273 TGTACGAGAT
Statistics
Matches: 90, Mismatches: 18, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
42 28 0.31
43 35 0.39
44 27 0.30
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTAC
Found at i:78158522 original size:14 final size:13
Alignment explanation
Indices: 78158499--78158530 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
78158489 AGAATATTGA
78158499 AACAATAATTAAG
1 AACAATAATTAAG
78158512 AACACATAATTAAG
1 AACA-ATAATTAAG
78158526 AACAA
1 AACAA
78158531 GTCAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:78161035 original size:25 final size:25
Alignment explanation
Indices: 78160983--78161040 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
78160973 AGAAAACCTA
*
78160983 AAAATGAAATAGTATTAAATGAAAAT
1 AAAAT-AAAAAGTATTAAATGAAAAT
*
78161009 AAAATAAAAAGTACTTAAA-GAAGAT
1 AAAATAAAAAGTA-TTAAATGAAAAT
78161034 -AAATAAA
1 AAAATAAA
78161041 GATAAAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 7 0.24
25 12 0.41
26 10 0.34
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (25 bp):
AAAATAAAAAGTATTAAATGAAAAT
Found at i:78168637 original size:56 final size:56
Alignment explanation
Indices: 78168524--78168648 Score: 146
Period size: 56 Copynumber: 2.2 Consensus size: 56
78168514 AAGACTATGA
* * * * * *
78168524 CATCGATATGTGACTCCGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGG
1 CATCGATATGTGACGCCAACATATGTGTGCGAGTAAGACCACGTCTGAGACGTTGG
* *
78168580 CATTGATATGTGACGCCAACATATGTGTGCGAGTAAGACC-CTGTCTGGGACAG-TGG
1 CATCGATATGTGACGCCAACATATGTGTGCGAGTAAGACCAC-GTCTGAGAC-GTTGG
78168636 CATCGATATGTGA
1 CATCGATATGTGA
78168649 TTACATGTAA
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
55 1 0.02
56 56 0.97
57 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (56 bp):
CATCGATATGTGACGCCAACATATGTGTGCGAGTAAGACCACGTCTGAGACGTTGG
Found at i:78171944 original size:21 final size:20
Alignment explanation
Indices: 78171910--78171949 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
78171900 CCTGTGAAAC
*
78171910 TTTGAAAAAATTGTTTAAGT
1 TTTGAAAAAATTGTATAAGT
*
78171930 TTTGAAAAATTTTGTATAAG
1 TTTGAAAAA-ATTGTATAAG
78171950 CTTAGTTTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.45
Consensus pattern (20 bp):
TTTGAAAAAATTGTATAAGT
Found at i:78174881 original size:43 final size:43
Alignment explanation
Indices: 78174814--78174962 Score: 156
Period size: 43 Copynumber: 3.5 Consensus size: 43
78174804 GGTACCATTC
* * *
78174814 GGGCCTCGAGCCGAGTAGGCTATAATATTGGTGAAATAATATT
1 GGGCCTCGAGCCTAGCAGGCTATAATACTGGTGAAATAATATT
* * * * *
78174857 GGGCCTTGAGCCTAGCAGGTTATAATGCCGGTGAAATAATATC
1 GGGCCTCGAGCCTAGCAGGCTATAATACTGGTGAAATAATATT
* * *
78174900 GGGCCTCAAGCCTAGCAGGCTATAGTGCCT-GTGAAATAATATT
1 GGGCCTCGAGCCTAGCAGGCTATAAT-ACTGGTGAAATAATATT
* * *
78174943 GGGCTTAGAGCGTAGCAGGC
1 GGGCCTCGAGCCTAGCAGGC
78174963 AAAATGCCGG
Statistics
Matches: 86, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
43 85 0.99
44 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (43 bp):
GGGCCTCGAGCCTAGCAGGCTATAATACTGGTGAAATAATATT
Found at i:78175003 original size:41 final size:40
Alignment explanation
Indices: 78174955--78175057 Score: 98
Period size: 40 Copynumber: 2.5 Consensus size: 40
78174945 GCTTAGAGCG
*
78174955 TAGCAGGCAAAATGCCGGTGAATGAATTCAGACTTAAAATC
1 TAGCAGGCAAAATGCCGGTG-ATGAATTCAGACTTAAAACC
**** * **
78174996 TAGCAGGCTTCGTGCCGGTGATGAATTCGGGTTTAAAACC
1 TAGCAGGCAAAATGCCGGTGATGAATTCAGACTTAAAACC
** *
78175036 TAGCAGGCTTATTGCCGGTGAT
1 TAGCAGGCAAAATGCCGGTGAT
78175058 TTGATAACAG
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
40 36 0.69
41 16 0.31
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.26
Consensus pattern (40 bp):
TAGCAGGCAAAATGCCGGTGATGAATTCAGACTTAAAACC
Found at i:78175032 original size:40 final size:40
Alignment explanation
Indices: 78174967--78175057 Score: 119
Period size: 40 Copynumber: 2.2 Consensus size: 40
78174957 GCAGGCAAAA
* *
78174967 TGCCGGTGAATGAATTCAGACTTAAAATCTAGCAGGCTTCG
1 TGCCGGTG-ATGAATTCAGACTTAAAACCTAGCAGGCTTAG
* ** *
78175008 TGCCGGTGATGAATTCGGGTTTAAAACCTAGCAGGCTTAT
1 TGCCGGTGATGAATTCAGACTTAAAACCTAGCAGGCTTAG
78175048 TGCCGGTGAT
1 TGCCGGTGAT
78175058 TTGATAACAG
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 36 0.82
41 8 0.18
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (40 bp):
TGCCGGTGATGAATTCAGACTTAAAACCTAGCAGGCTTAG
Found at i:78179760 original size:43 final size:42
Alignment explanation
Indices: 78179712--78179854 Score: 160
Period size: 43 Copynumber: 3.3 Consensus size: 42
78179702 CATTCGGGCA
*
78179712 TCGAGCCTAGCAGGCTATAATATCGATGAAATAATATCGATCC
1 TCGAGCCTAGCAGGCTATAAT-TCGATGAAATAATATCGAGCC
* * *
78179755 TCGAGCCTAGCAGGCTATAATGCCAGTGAAATAATATCGGGCC
1 TCGAGCCTAGCAGGCTATAATTCGA-TGAAATAATATCGAGCC
* * * * *
78179798 TCGAGCCTAGTAGGCTATAGTGTCGGTGAAATAATATCGGGCT
1 TCGAGCCTAGCAGGCTATAAT-TCGATGAAATAATATCGAGCC
* *
78179841 TAGAGCGTAGCAGG
1 TCGAGCCTAGCAGG
78179855 GAAAATGCCG
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
42 2 0.02
43 82 0.96
44 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.24
Consensus pattern (42 bp):
TCGAGCCTAGCAGGCTATAATTCGATGAAATAATATCGAGCC
Found at i:78180423 original size:16 final size:18
Alignment explanation
Indices: 78180392--78180424 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
78180382 AACTCGTCAC
78180392 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
78180410 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
78180425 AATTCATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:78184133 original size:40 final size:40
Alignment explanation
Indices: 78184046--78184263 Score: 284
Period size: 40 Copynumber: 5.5 Consensus size: 40
78184036 AAGCCAAGTA
* * *
78184046 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
78184084 CCTTCGGGACATAGCCCGGATATAGTAACTCACACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
78184124 CCTTAGGGACTTATCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
78184164 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
78184204 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
78184245 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
78184264 TTATCATCCA
Statistics
Matches: 161, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
38 12 0.07
39 17 0.11
40 104 0.65
41 24 0.15
42 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:78192357 original size:40 final size:40
Alignment explanation
Indices: 78192275--78192492 Score: 275
Period size: 40 Copynumber: 5.5 Consensus size: 40
78192265 AAGCTAAGTA
* * * *
78192275 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
* *
78192313 CCTTCGGGACATAGCCCGGATATAGTAACTCACACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
78192353 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* *
78192393 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* *
78192433 CCTTCGGGACTTAGCCCGGA-ACTAGTCACT-AGCGCAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CAC-AAATG
78192474 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
78192493 TTATCATCCA
Statistics
Matches: 161, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
38 12 0.07
39 17 0.11
40 108 0.67
41 24 0.15
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:78206644 original size:47 final size:47
Alignment explanation
Indices: 78206593--78207052 Score: 760
Period size: 47 Copynumber: 9.7 Consensus size: 47
78206583 TTAGGATTCT
* * *
78206593 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
* *
78206640 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGACCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
78206687 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
78206734 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
78206781 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
78206828 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
78206877 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
78206924 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
78206971 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
78207018 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
78207053 TCCCGAAGGG
Statistics
Matches: 391, Mismatches: 19, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 343 0.88
49 47 0.12
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:78206968 original size:237 final size:237
Alignment explanation
Indices: 78206614--78207052 Score: 770
Period size: 237 Copynumber: 1.9 Consensus size: 237
78206604 GTGAACATGC
78206614 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGACCT
1 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGACCT
78206679 AATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * ** * *
78206744 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATG
131 TGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATG
78206809 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
196 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
78206851 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGACCT
*
78206916 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * *
78206981 TGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATG
131 TGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATG
78207046 TGATAAG
196 TGATAAG
78207053 TCCCGAAGGG
Statistics
Matches: 190, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
237 190 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (237 bp):
ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGACCT
AATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATG
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:78207221 original size:37 final size:37
Alignment explanation
Indices: 78207171--78207286 Score: 196
Period size: 37 Copynumber: 3.1 Consensus size: 37
78207161 CCGAGCTCTA
78207171 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
78207208 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * *
78207245 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
78207282 AAGAC
1 AAGAC
78207287 TTCGTAATAA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 75 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:78208622 original size:42 final size:43
Alignment explanation
Indices: 78208549--78208650 Score: 188
Period size: 42 Copynumber: 2.4 Consensus size: 43
78208539 TTGGTTTTCA
*
78208549 GCACTAAGTGTGCAGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
78208592 GCACTAAGTGTGCGGGCAATAAGTG-TCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
78208634 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
78208651 TTGAAATGCA
Statistics
Matches: 58, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
42 34 0.59
43 24 0.41
ACGTcount: A:0.24, C:0.16, G:0.35, T:0.25
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:78208667 original size:29 final size:29
Alignment explanation
Indices: 78208632--78208703 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
78208622 GTTGTGAGAT
* *
78208632 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
78208661 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
78208690 TGGCACTAAGTGTG
1 TGGCACTAAGTGTG
78208704 AGTGGTTGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:78209098 original size:40 final size:40
Alignment explanation
Indices: 78209053--78209238 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
78209043 CTAAGTGACC
78209053 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
*
78209093 GTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
* *
78209133 GTATCCGGACTAAATTCCGAAGAGCATTCGTGCTAGTGAT
1 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
* * *
78209173 ATATCCGTG-CTAA--ACCGCAAAGAGCATTCGTGCTGGTGTT
1 ATATCCG-GACTAAGTTCCG--AAGAGCATTCGTGCTAGTGAT
* * *
78209213 ATATCCGGGCTAGGTCCCGAAGAGCA
1 ATATCCGGACTAAGTTCCGAAGAGCA
78209239 ATCACGCTGG
Statistics
Matches: 132, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
38 3 0.02
39 1 0.01
40 124 0.94
41 1 0.01
42 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
Found at i:78211741 original size:47 final size:47
Alignment explanation
Indices: 78211690--78211912 Score: 331
Period size: 47 Copynumber: 4.7 Consensus size: 47
78211680 TTAGGATTCT
* * *
78211690 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
78211737 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
78211784 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
78211831 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
78211878 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
78211913 TCCCGAAGGG
Statistics
Matches: 162, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.01
47 161 0.99
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:78211765 original size:25 final size:25
Alignment explanation
Indices: 78211737--78211815 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
78211727 CTAATGGCCG
78211737 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
78211762 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
78211784 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
78211809 ATGTGAT
1 ATGTGAT
78211816 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:78212081 original size:37 final size:37
Alignment explanation
Indices: 78212031--78212146 Score: 187
Period size: 37 Copynumber: 3.1 Consensus size: 37
78212021 CCGAGCTCTA
78212031 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
78212068 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * * *
78212105 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGAT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
78212142 AAGAC
1 AAGAC
78212147 TTCGTAATAA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:78213524 original size:29 final size:31
Alignment explanation
Indices: 78213483--78213541 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
78213473 TTTACGAGCC
*
78213483 TAGGGGTAAAAA-TGTAATTTTGACAAAATT
1 TAGGGGTAAAAATTATAATTTTGACAAAATT
*
78213513 TAGGGG-AAAAATTATAATTTTGCCAAAAT
1 TAGGGGTAAAAATTATAATTTTGACAAAAT
78213542 ATGATTTTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 5 0.19
30 21 0.81
ACGTcount: A:0.44, C:0.05, G:0.19, T:0.32
Consensus pattern (31 bp):
TAGGGGTAAAAATTATAATTTTGACAAAATT
Found at i:78225179 original size:29 final size:29
Alignment explanation
Indices: 78225124--78225194 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 29
78225114 CATTAAGCGC
* **
78225124 AATCATATTCATATGGCCCGTTTGGCCCA
1 AATCACATTCATATGGCCCGTCAGGCCCA
* *
78225153 AATCACATTTATATGGCCTGTCAGGCCC-
1 AATCACATTCATATGGCCCGTCAGGCCCA
* *
78225181 AGTCAAATTCATAT
1 AATCACATTCATAT
78225195 TCATGCTCAC
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 11 0.32
29 23 0.68
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.31
Consensus pattern (29 bp):
AATCACATTCATATGGCCCGTCAGGCCCA
Found at i:78225429 original size:16 final size:16
Alignment explanation
Indices: 78225408--78225438 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
78225398 CCAAACTTTA
78225408 GGCATTTCGACTTTTT
1 GGCATTTCGACTTTTT
*
78225424 GGCATTTCGGCTTTT
1 GGCATTTCGACTTTT
78225439 GCCGATACAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.19, G:0.23, T:0.48
Consensus pattern (16 bp):
GGCATTTCGACTTTTT
Found at i:78229317 original size:40 final size:40
Alignment explanation
Indices: 78229219--78229521 Score: 378
Period size: 40 Copynumber: 7.6 Consensus size: 40
78229209 TCCTCGTTCA
* * * * *
78229219 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
78229258 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
78229298 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
78229338 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
78229378 AATGCCTTCGGGACTTAACCCGGATATAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
78229418 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
78229458 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
78229498 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
78229522 CAGCATTCAA
Statistics
Matches: 236, Mismatches: 24, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.16
40 191 0.81
41 8 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:78237228 original size:39 final size:40
Alignment explanation
Indices: 78237183--78237483 Score: 339
Period size: 40 Copynumber: 7.7 Consensus size: 40
78237173 GCTCCTCGTT
* * * *
78237183 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
78237223 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
78237262 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
78237302 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
78237342 CAAAGGCCTTCGGG-CTTAACCCGGATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
78237380 CAAATGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
78237419 CAAA-GCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
78237459 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
78237484 CAGCATTCAA
Statistics
Matches: 236, Mismatches: 18, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
37 2 0.01
38 42 0.18
39 77 0.33
40 112 0.47
41 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:78242397 original size:55 final size:55
Alignment explanation
Indices: 78242336--78242487 Score: 232
Period size: 55 Copynumber: 2.8 Consensus size: 55
78242326 ATATTAAGTC
* * *
78242336 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * *
78242391 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGGTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
78242446 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCT
78242488 GCACATTTTA
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 88 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:78242400 original size:28 final size:27
Alignment explanation
Indices: 78242336--78242487 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
78242326 ATATTAAGTC
* *
78242336 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
78242363 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
78242391 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
78242418 CGCACACTTAGTGGTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
78242446 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
78242473 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78242488 GCACATTTTA
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
27 65 0.56
28 51 0.44
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:78258678 original size:40 final size:40
Alignment explanation
Indices: 78258580--78258882 Score: 378
Period size: 40 Copynumber: 7.6 Consensus size: 40
78258570 TCCTCGTTCA
* * * * *
78258580 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
78258619 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
78258659 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
78258699 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
78258739 AATGCCTTCGGGACTTAACCCGGATATAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
78258779 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
78258819 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
78258859 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
78258883 CAGCATTCAA
Statistics
Matches: 236, Mismatches: 24, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.16
40 191 0.81
41 8 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:78260777 original size:43 final size:43
Alignment explanation
Indices: 78260729--78260863 Score: 127
Period size: 43 Copynumber: 3.2 Consensus size: 43
78260719 CCGGACGTGA
* *
78260729 TCTTACATGTAATTCAATATTGATGCCTCTGTCCCAGACAGGG
1 TCTTACATGTAATTCAATATTGATGCCTATGTCCCAGACACGG
* * *
78260772 TCTTACACG-AAATCAGATA-TGATG-CTGATGTCCCAGACATGG
1 TCTTACATGTAATTCA-ATATTGATGCCT-ATGTCCCAGACACGG
* * *
78260814 TCTTATATGTAAATCTC-A-ATTGAGGCCTATGTCCCAGACACAG
1 TCTTACATGT-AAT-TCAATATTGATGCCTATGTCCCAGACACGG
78260857 TCTTACA
1 TCTTACA
78260864 CGATGTCTCA
Statistics
Matches: 74, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
41 2 0.03
42 31 0.42
43 35 0.47
44 4 0.05
45 2 0.03
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (43 bp):
TCTTACATGTAATTCAATATTGATGCCTATGTCCCAGACACGG
Found at i:78261903 original size:42 final size:43
Alignment explanation
Indices: 78261844--78261942 Score: 132
Period size: 42 Copynumber: 2.3 Consensus size: 43
78261834 GATTTGTGTA
*
78261844 TAAGACCATGTCTGGGACA-TCGGCATCGTATATGAG-TT-CGTG
1 TAAGACCATGTCTGGGACAGT-GGCATCG-ATATGAGATTACATG
* *
78261886 TAAGACCTTGTCTGGGACAGTGGCATCGATATGTGATTACATG
1 TAAGACCATGTCTGGGACAGTGGCATCGATATGAGATTACATG
78261929 TAAGACCATGTCTG
1 TAAGACCATGTCTG
78261943 AGACGTTGGC
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
41 6 0.12
42 27 0.54
43 17 0.34
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACAGTGGCATCGATATGAGATTACATG
Found at i:78261953 original size:43 final size:42
Alignment explanation
Indices: 78261783--78261954 Score: 177
Period size: 43 Copynumber: 4.0 Consensus size: 42
78261773 CATAGGATTC
* * *
78261783 CGATATGTGATTTCGTGTAAGACCACGTCTGGGATGTTAGCAT
1 CGATATGTGA-TTCGTGTAAGACCATGTCTGGGACGTTGGCAT
* * * *
78261826 CGATTTGTGATTTGTGTATAAGACCATGTCTGGGACATCGGCAT
1 CGATATGTGATTCGTG--TAAGACCATGTCTGGGACGTTGGCAT
* *
78261870 CG-TATATGAGTTCGTGTAAGACCTTGTCTGGGACAG-TGGCAT
1 CGATATGTGA-TTCGTGTAAGACCATGTCTGGGAC-GTTGGCAT
* *
78261912 CGATATGTGATTACATGTAAGACCATGTCTGAGACGTTGGCAT
1 CGATATGTGATT-CGTGTAAGACCATGTCTGGGACGTTGGCAT
78261955 TGTACGAGCT
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
42 32 0.30
43 45 0.43
44 28 0.27
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (42 bp):
CGATATGTGATTCGTGTAAGACCATGTCTGGGACGTTGGCAT
Found at i:78262750 original size:19 final size:19
Alignment explanation
Indices: 78262726--78262764 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
78262716 GGTAAATTTG
78262726 ATATATGTA-GTTGATGAAT
1 ATATATGTAGGTT-ATGAAT
*
78262745 ATATATTTAGGTTATGAAT
1 ATATATGTAGGTTATGAAT
78262764 A
1 A
78262765 ATTAATGGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 15 0.83
20 3 0.17
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (19 bp):
ATATATGTAGGTTATGAAT
Found at i:78269182 original size:43 final size:43
Alignment explanation
Indices: 78269135--78269249 Score: 169
Period size: 43 Copynumber: 2.7 Consensus size: 43
78269125 AACACATATT
* * * *
78269135 GATGCCACTGTCCCAGACAGGGTCTTACACGAAATC-GATTAAC
1 GATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAAT-AC
78269178 GATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATAC
1 GATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATAC
*
78269221 AATGCCAATGTCCCAGACATGGTCTTACA
1 GATGCCAATGTCCCAGACATGGTCTTACA
78269250 TGTAACCACA
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
43 64 0.97
44 2 0.03
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (43 bp):
GATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATAC
Found at i:78274007 original size:44 final size:45
Alignment explanation
Indices: 78273929--78274014 Score: 138
Period size: 44 Copynumber: 1.9 Consensus size: 45
78273919 CAAAACATGT
78273929 GTCACATATATCACAAACTCAAACCACAACTCAATAAGTTCAGAG
1 GTCACATATATCACAAACTCAAACCACAACTCAATAAGTTCAGAG
* * *
78273974 GTCACATATATCA-GAATTCAAACCACAAGTCAATAAGTTCA
1 GTCACATATATCACAAACTCAAACCACAACTCAATAAGTTCA
78274015 AATTACATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
44 25 0.66
45 13 0.34
ACGTcount: A:0.44, C:0.24, G:0.09, T:0.22
Consensus pattern (45 bp):
GTCACATATATCACAAACTCAAACCACAACTCAATAAGTTCAGAG
Found at i:78278078 original size:27 final size:27
Alignment explanation
Indices: 78278040--78278096 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
78278030 TCGGCAATGA
78278040 CAAAGACAATTTAACAAACCTTAAATT
1 CAAAGACAATTTAACAAACCTTAAATT
78278067 CAAAGACAATTTAACAAACCTTAAATT
1 CAAAGACAATTTAACAAACCTTAAATT
78278094 CAA
1 CAA
78278097 CTTATAACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.53, C:0.19, G:0.04, T:0.25
Consensus pattern (27 bp):
CAAAGACAATTTAACAAACCTTAAATT
Found at i:78281277 original size:39 final size:40
Alignment explanation
Indices: 78281234--78281401 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
78281224 CTCGTTCAAG
* * * *
78281234 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
78281273 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
78281313 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
78281353 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
78281393 TGCCTTCGG
1 TGCCTTCGG
78281402 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:78281385 original size:80 final size:80
Alignment explanation
Indices: 78281269--78281454 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
78281259 AGTAACTCAT
* * *
78281269 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
78281333 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
78281348 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
78281412 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
78281429 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
78281455 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:78281414 original size:40 final size:40
Alignment explanation
Indices: 78281271--78281454 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
78281261 TAACTCATAC
* *
78281271 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
78281311 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
78281351 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
78281391 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
78281432 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
78281455 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:78303701 original size:37 final size:34
Alignment explanation
Indices: 78303651--78303722 Score: 81
Period size: 37 Copynumber: 2.0 Consensus size: 34
78303641 AAGTGTGCCA
* *
78303651 TTTTTCTGACCATCTTTCCTCCTCCTCCTTTCTTTTC
1 TTTTTCTCACCATC-TACCTCCTCCT-C-TTCTTTTC
* *
78303688 TTTTTCTCTCCATCTACCTTCTCCTCTTCTTTTC
1 TTTTTCTCACCATCTACCTCCTCCTCTTCTTTTC
78303722 T
1 T
78303723 CCATAGCCGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
34 9 0.29
35 1 0.03
36 9 0.29
37 12 0.39
ACGTcount: A:0.06, C:0.38, G:0.01, T:0.56
Consensus pattern (34 bp):
TTTTTCTCACCATCTACCTCCTCCTCTTCTTTTC
Found at i:78304502 original size:8 final size:8
Alignment explanation
Indices: 78304489--78304515 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
78304479 CTAGATCAGC
78304489 AAAAGCCG
1 AAAAGCCG
78304497 AAAAGCCG
1 AAAAGCCG
78304505 AAAAGCCG
1 AAAAGCCG
78304513 AAA
1 AAA
78304516 TGCCAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.56, C:0.22, G:0.22, T:0.00
Consensus pattern (8 bp):
AAAAGCCG
Found at i:78304524 original size:16 final size:16
Alignment explanation
Indices: 78304489--78304524 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
78304479 CTAGATCAGC
*
78304489 AAAAGCCGAAAAGCCG
1 AAAAGCCGAAAAGCCA
*
78304505 AAAAGCCGAAATGCCA
1 AAAAGCCGAAAAGCCA
78304521 AAAA
1 AAAA
78304525 ATCGGTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.56, C:0.22, G:0.19, T:0.03
Consensus pattern (16 bp):
AAAAGCCGAAAAGCCA
Found at i:78309281 original size:31 final size:31
Alignment explanation
Indices: 78309240--78309303 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
78309230 CCTTTTCATA
*
78309240 TTTCATATTTCATAACACTAGGCCGAAGCCT
1 TTTCAAATTTCATAACACTAGGCCGAAGCCT
** *
78309271 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTAGGCCGAAGCCT
78309302 TT
1 TT
78309304 ACTGTAAACA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTAGGCCGAAGCCT
Found at i:78309544 original size:24 final size:24
Alignment explanation
Indices: 78309511--78309662 Score: 245
Period size: 24 Copynumber: 6.4 Consensus size: 24
78309501 CTGGAGGCCT
* *
78309511 AGCCTCTTTTAATAACTAGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
78309536 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
78309560 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
78309583 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
78309607 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
78309631 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
78309654 AGCCCTTTT
1 AGCCCTTTT
78309663 GCACTTCCTC
Statistics
Matches: 121, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
23 45 0.37
24 72 0.60
25 4 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:78309597 original size:71 final size:71
Alignment explanation
Indices: 78309511--78309663 Score: 261
Period size: 71 Copynumber: 2.1 Consensus size: 71
78309501 CTGGAGGCCT
*
78309511 AGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTG
1 AGCC-CTTTTGATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTG
78309576 GGGCATA
65 GGGCATA
* * *
78309583 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
1 AGCCCTTTTGATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGG
78309648 GGCATA
66 GGCATA
78309654 AGCCCTTTTG
1 AGCCCTTTTG
78309664 CACTTCCTCC
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
71 73 0.95
72 4 0.05
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (71 bp):
AGCCCTTTTGATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGG
GGCATA
Found at i:78309663 original size:47 final size:48
Alignment explanation
Indices: 78309511--78309662 Score: 245
Period size: 47 Copynumber: 3.2 Consensus size: 48
78309501 CTGGAGGCCT
* *
78309511 AGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
*
78309560 AGCCC-TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
*
78309607 AGCCCTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
78309654 AGCCCTTTT
1 AGCCCTTTT
78309663 GCACTTCCTC
Statistics
Matches: 97, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
47 70 0.72
48 23 0.24
49 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
Found at i:78309734 original size:9 final size:9
Alignment explanation
Indices: 78309720--78309776 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
78309710 ATCTCATGTG
78309720 CATATCATA
1 CATATCATA
*
78309729 CATATCATGTG
1 CATATCA--TA
78309740 CATATCATA
1 CATATCATA
* *
78309749 CATGTCATGTG
1 CATATCA--TA
78309760 CATATCATA
1 CATATCATA
78309769 CATATCAT
1 CATATCAT
78309777 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:78309736 original size:20 final size:20
Alignment explanation
Indices: 78309708--78309778 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
78309698 GCATTTATGA
*
78309708 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
78309728 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
78309748 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
78309768 ACATATCATGT
1 ACATATCATGT
78309779 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:78309743 original size:11 final size:11
Alignment explanation
Indices: 78309713--78309767 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
78309703 TATGAACATC
78309713 TCATGTGCATA
1 TCATGTGCATA
*
78309724 TCA--TACATA
1 TCATGTGCATA
78309733 TCATGTGCATA
1 TCATGTGCATA
* *
78309744 TCA--TACATG
1 TCATGTGCATA
78309753 TCATGTGCATA
1 TCATGTGCATA
78309764 TCAT
1 TCAT
78309768 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:78311056 original size:27 final size:26
Alignment explanation
Indices: 78311021--78311098 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 26
78311011 GGGCATATTC
*
78311021 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACC-TACAGGGGTATTACG
78311048 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCACTTTA-CCTACAGGGG-TATTACG
*
78311075 GTCACTTTACCTAATAGGGGTATT
1 GTCACTTTACCT-ACAGGGGTATT
78311099 TTAGTCATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
26 4 0.09
27 38 0.84
28 3 0.07
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGGTATTACG
Found at i:78311169 original size:27 final size:27
Alignment explanation
Indices: 78311139--78311190 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
78311129 GTAAATCTAC
78311139 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTATTTCTA-TAATTTTGT
*
78311166 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAAGGTATTTCTATAATTTT
78311191 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:78311289 original size:54 final size:54
Alignment explanation
Indices: 78311227--78311367 Score: 185
Period size: 54 Copynumber: 2.6 Consensus size: 54
78311217 TTTGTAAATT
*
78311227 AGGGTATTTTTGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAACCA
1 AGGGTATTTTAGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAACCA
* * * * *
78311281 AGGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTAGTAATTTTACAAATTGA-GGGTATTTCGATAATTTCACAAACCA
** *
78311335 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 AGGGTATTTTAGTAATTTTACAAATTGAGGGTA
78311368 AAATAGTAAT
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
53 1 0.01
54 73 0.97
55 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAACCA
Found at i:78311365 original size:27 final size:27
Alignment explanation
Indices: 78311147--78311421 Score: 155
Period size: 27 Copynumber: 10.1 Consensus size: 27
78311137 ACAAACCAAA
* * * *
78311147 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTTAGTAATTTTATAAATCAAG
*
78311174 GGTATTTCTA-TAATTTTTAGAAAGTCAAG
1 GGTATTT-TAGTAA-TTTTATAAA-TCAAG
* * *
78311203 GGTATTTCT-GTAACTTTGTAAAT-TAG
1 GGTATTT-TAGTAATTTTATAAATCAAG
* * **
78311229 GGTATTTTTGTAATTTTACAAATTGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * * *
78311256 GGTA-TTTCGATAATTTCACAAACCAAG
1 GGTATTTTAG-TAATTTTATAAATCAAG
* * *
78311283 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTAGTAATTTTATAAATC-AAG
* * *
78311310 GGTATTTTGGTAATTTTACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* *
78311337 GGTATTTTAGTAATTTTGTAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
*** *
78311364 GGTAAAATAGTAATTCTATAAATCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
**** * *
78311391 GGTAAAACAGTAATTCTATAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
78311418 GGTA
1 GGTA
78311422 AAACGGTAAT
Statistics
Matches: 203, Mismatches: 35, Indels: 20
0.79 0.14 0.08
Matches are distributed among these distances:
25 1 0.00
26 25 0.12
27 143 0.70
28 19 0.09
29 15 0.07
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.38
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTATAAATCAAG
Found at i:78311366 original size:81 final size:79
Alignment explanation
Indices: 78311116--78311367 Score: 186
Period size: 81 Copynumber: 3.1 Consensus size: 79
78311106 TTTCATCCTA
* * * * * ** *
78311116 CAAGGGTGTTTTGGTAAATCTACAAACCAAAGGTATTTCAGTAATTTTGTAAACCAATGGTATTT
1 CAAGGGTATTTTGGTAAATTTACAAA-CTAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
78311181 CTA-TAATTTTTAGAAAGT
65 -TAGTAATTTTT--AAA-T
* ** * * ***
78311199 CAAGGGTATTTCT-GTAACTTTGTAAATTAGGGTATTTTTGTAATTTTACAAATTGAGGGTA-TT
1 CAAGGGTATTT-TGGTAAATTTACAAACTAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
* ** *
78311262 TCGATAATTTCACAAAC
65 TAG-TAATTT-TTAAAT
* *
78311279 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
1 CAAGGGTATTTTGGTAAATTTACAAACTA-GGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
78311344 TAGTAATTTTGTAAAT
65 TAGTAATTTT-TAAAT
*
78311360 CGAGGGTA
1 CAAGGGTA
78311368 AAATAGTAAT
Statistics
Matches: 128, Mismatches: 33, Indels: 18
0.72 0.18 0.10
Matches are distributed among these distances:
79 1 0.01
80 24 0.19
81 49 0.38
82 34 0.27
83 19 0.15
84 1 0.01
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (79 bp):
CAAGGGTATTTTGGTAAATTTACAAACTAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTT
AGTAATTTTTAAAT
Found at i:78311377 original size:54 final size:54
Alignment explanation
Indices: 78311317--78311542 Score: 211
Period size: 54 Copynumber: 4.2 Consensus size: 54
78311307 AGGGGTATTT
* **** * *
78311317 TGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAA
1 TGGTAATTCTACAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAA
* * *
78311371 TAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTCTACAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAA
* ** * * *
78311425 CGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAGTCGAGGGTAAAA
1 TGGTAATTCTACAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAA
* * ** * * * *
78311479 TGATAATTATGTAAATCAGGGGTAAAAC-GATAATTCTGTAAATCGGGGGTAAAA
1 TGGTAATTCTACAAACCAAGGGTAAAACAG-TAATTCTATAAATCGAGGGTAAAA
*
78311533 CGGTAATTCT
1 TGGTAATTCT
78311543 GTAAATCGGG
Statistics
Matches: 147, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
53 1 0.01
54 146 0.99
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (54 bp):
TGGTAATTCTACAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAA
Found at i:78311404 original size:81 final size:81
Alignment explanation
Indices: 78311319--78311549 Score: 205
Period size: 81 Copynumber: 2.9 Consensus size: 81
78311309 GGGTATTTTG
* **** * * *
78311319 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATA
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
78311384 AATCAAGGGTAAAACA
66 AATCAAGGGTAAAACA
* * * * *
78311400 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTA
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
* * *
78311465 AGTCGAGGGTAAAA-T
66 AATCAAGGGTAAAACA
* ** * * ** * *
78311480 GATAATTATGTAAATCAGGGGTAAAAC-GATAATTCTGTAAATCGGGGGTAAAACGGTAATTCTG
1 G-TAATTCTACAAACCAAGGGTAAAACAG-TAATTCTGTAAATCAAGGGTAAAACAGTAATTCTA
78311544 TAAATC
64 TAAATC
78311550 GGGGGTACTT
Statistics
Matches: 124, Mismatches: 24, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
80 2 0.02
81 122 0.98
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (81 bp):
GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
AATCAAGGGTAAAACA
Found at i:78311422 original size:27 final size:27
Alignment explanation
Indices: 78311345--78311556 Score: 259
Period size: 27 Copynumber: 7.9 Consensus size: 27
78311335 AGGGTATTTT
* *
78311345 AGTAATTTTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
78311372 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
78311399 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
78311426 GGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
78311453 AGTAATTCTGTAAGTCGAGGGTAAAA-
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
78311479 TGATAATTATGTAAATC-AGGGGTAAAAC
1 AG-TAATTCTGTAAATCGA-GGGTAAAAC
*
78311507 -GATAATTCTGTAAATCGGGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* *
78311534 GGTAATTCTGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
78311557 CTTTGGTAAT
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
26 2 0.01
27 161 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:78311567 original size:54 final size:54
Alignment explanation
Indices: 78311345--78311549 Score: 295
Period size: 54 Copynumber: 3.8 Consensus size: 54
78311335 AGGGTATTTT
* ** *
78311345 AGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAAC
*
78311399 AGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAAC
* * * * *
78311453 AGTAATTCTGTAAGTCGAGGGTAAAATGATAATTATGTAAATCAGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAAC
*
78311507 -GATAATTCTGTAAATCGGGGGTAAAACGGTAATTCTGTAAATC
1 AG-TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC
78311550 GGGGGTACTT
Statistics
Matches: 134, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
53 1 0.01
54 133 0.99
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.28
Consensus pattern (54 bp):
AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAAC
Found at i:78311592 original size:27 final size:27
Alignment explanation
Indices: 78311562--78311650 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 27
78311552 GGGTACTTTG
*
78311562 GTAATTTTACAAGTCGAAAGTATTTCA
1 GTAATTTTACAAATCGAAAGTATTTCA
**
78311589 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAAGTATTTCA
* * *
78311616 GT-ATTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-AGTATTTCA
78311642 GTAATTTTA
1 GTAATTTTA
78311651 GTAAACTAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
25 2 0.04
26 20 0.37
27 32 0.59
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAAGTATTTCA
Found at i:78311634 original size:26 final size:27
Alignment explanation
Indices: 78311581--78311659 Score: 99
Period size: 26 Copynumber: 2.9 Consensus size: 27
78311571 CAAGTCGAAA
*
78311581 GTATTTCAGTAATTTTACAAA-TCGAGG
1 GTATTTCAGTAATTTTACAAACT-AAGG
78311608 GTATTTCAGT-ATTTTACAAACTAAGG
1 GTATTTCAGTAATTTTACAAACTAAGG
* *
78311634 GTATTTCGGTAATTTTAGTAAACTAA
1 GTATTTCAGTAATTTTA-CAAACTAA
78311660 AGTATTCTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
26 22 0.48
27 17 0.37
28 7 0.15
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.39
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAACTAAGG
Found at i:78313418 original size:31 final size:31
Alignment explanation
Indices: 78313380--78313458 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
78313370 CAGCACATAT
78313380 TGGGCCGAAGCCTTTACATTATTCATATCAC
1 TGGGCCGAAGCCTTTACATTATTCATATCAC
*
78313411 TGGGCCGAAGCCTTTTCATTATTCATATCAC
1 TGGGCCGAAGCCTTTACATTATTCATATCAC
78313442 TGGGCCGAAGCCTTTAC
1 TGGGCCGAAGCCTTTAC
78313459 TGTAACAATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.32
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTACATTATTCATATCAC
Found at i:78313690 original size:25 final size:26
Alignment explanation
Indices: 78313675--78313771 Score: 135
Period size: 26 Copynumber: 3.8 Consensus size: 26
78313665 CTCTTTTAAT
78313675 AACTGGGGCAAAAGCCCTTTTTGATA
1 AACTGGGGCAAAAGCCCTTTTTGATA
78313701 AACTGGGGCAAAAGCCCTTTTTGATA
1 AACTGGGGCAAAAGCCCTTTTTGATA
* * *
78313727 AACTGGGGC-AACGCCCTTTTCGGTA
1 AACTGGGGCAAAAGCCCTTTTTGATA
* *
78313752 AACTAGGGC-ATAGCCCTTTT
1 AACTGGGGCAAAAGCCCTTTT
78313772 GCACTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
25 30 0.46
26 35 0.54
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCAAAAGCCCTTTTTGATA
Found at i:78313835 original size:11 final size:11
Alignment explanation
Indices: 78313819--78313857 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
78313809 TATATAAATT
78313819 TATCATGTGCA
1 TATCATGTGCA
*
78313830 TATCA--TACA
1 TATCATGTGCA
78313839 TATCATGTGCA
1 TATCATGTGCA
78313850 TATCATGT
1 TATCATGT
78313858 CAAATAATGC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 8 0.33
11 16 0.67
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:78315178 original size:12 final size:12
Alignment explanation
Indices: 78315161--78315185 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
78315151 CCCTACCTAT
78315161 TAACAATATTTA
1 TAACAATATTTA
78315173 TAACAATATTTA
1 TAACAATATTTA
78315185 T
1 T
78315186 GTTATAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TAACAATATTTA
Found at i:78322124 original size:25 final size:25
Alignment explanation
Indices: 78322096--78322179 Score: 77
Period size: 25 Copynumber: 3.4 Consensus size: 25
78322086 CTGGAGGCCT
78322096 AGCCTCTTTTAAT-AACTGGGGCAAA
1 AGCCTCTTTTAATAAACTGGGGC-AA
*
78322121 AGCCAT-TTTTGATAAACTGGGGCAA
1 AGCC-TCTTTTAATAAACTGGGGCAA
* * *
78322146 AGCC-CTTTTCAGTAAACTAGGGCAT
1 AGCCTCTTTT-AATAAACTGGGGCAA
78322171 AGCC-CTTTT
1 AGCCTCTTTT
78322180 GCACTTCCTC
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
24 4 0.08
25 36 0.72
26 10 0.20
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (25 bp):
AGCCTCTTTTAATAAACTGGGGCAA
Found at i:78322243 original size:11 final size:11
Alignment explanation
Indices: 78322227--78322274 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
78322217 TATATGAATT
78322227 TATCATGTGCA
1 TATCATGTGCA
*
78322238 TATCA--TACA
1 TATCATGTGCA
78322247 TATCATGTGCA
1 TATCATGTGCA
78322258 TATCATGT-CA
1 TATCATGTGCA
*
78322268 AATCATG
1 TATCATG
78322275 CATATCAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 8 0.25
11 16 0.50
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:78338341 original size:13 final size:13
Alignment explanation
Indices: 78338325--78338367 Score: 77
Period size: 13 Copynumber: 3.3 Consensus size: 13
78338315 TAATATATGT
78338325 AATCGAAATATCA
1 AATCGAAATATCA
78338338 AATCGAAATATCA
1 AATCGAAATATCA
*
78338351 AATCAAAATATCA
1 AATCGAAATATCA
78338364 AATC
1 AATC
78338368 CATAAAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.56, C:0.16, G:0.05, T:0.23
Consensus pattern (13 bp):
AATCGAAATATCA
Found at i:78339961 original size:5 final size:5
Alignment explanation
Indices: 78339947--78339987 Score: 75
Period size: 5 Copynumber: 8.4 Consensus size: 5
78339937 TTATTTAAAA
78339947 TTTA- TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TT
78339988 ATACATCATT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.11
5 32 0.89
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:78340929 original size:33 final size:33
Alignment explanation
Indices: 78340882--78340954 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 33
78340872 TTTAAAGATA
*
78340882 AAAAATAGAGAACTTAATCAATATTTAATTTAAT
1 AAAAATAGAGAACTTAAGCAA-ATTTAATTTAAT
* * *
78340916 AAAAATA-ATAACTTAAGGAAATTTATTTTAAT
1 AAAAATAGAGAACTTAAGCAAATTTAATTTAAT
*
78340948 AAGAATA
1 AAAAATA
78340955 TATTTTATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
32 17 0.50
33 10 0.29
34 7 0.21
ACGTcount: A:0.55, C:0.04, G:0.07, T:0.34
Consensus pattern (33 bp):
AAAAATAGAGAACTTAAGCAAATTTAATTTAAT
Found at i:78342366 original size:21 final size:21
Alignment explanation
Indices: 78342341--78342391 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
78342331 CCCGTATAGT
*
78342341 CCACACGGCCTAACCCAAAAC
1 CCACACGCCCTAACCCAAAAC
*
78342362 CCACACGCCCTAGCCCAAAAC
1 CCACACGCCCTAACCCAAAAC
78342383 CCACACGCC
1 CCACACGCC
78342392 GTGTGGTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.33, C:0.53, G:0.10, T:0.04
Consensus pattern (21 bp):
CCACACGCCCTAACCCAAAAC
Found at i:78344218 original size:221 final size:221
Alignment explanation
Indices: 78343830--78344271 Score: 785
Period size: 221 Copynumber: 2.0 Consensus size: 221
78343820 TTCTATGGAG
78343830 AAACCTTAAGAAAGACAAAGTCACCCATAGAGTACTCAATATCTTTTCTCTTCAGCTCTGCATAA
1 AAACCTTAAGAAAGACAAAGTCACCCATAGAGTACTCAATATCTTTTCTCTTCAGCTCTGCATAA
* * * * *
78343895 GACTTCTGTCTATCAAAAACTGCCTTCAGATTATCCATAATCATTCTAACATTATCTTTAGTCTC
66 GACTTCTGTCTATCAAAAACTACCTTCAGATGATCCATAATCATCCTAACATTATCTTCAATCTC
*
78343960 AGAAACCAACTCAGGACCCAAAACCCTACACTCACCCAACTCAATCCAACATAACGGAGTACGAC
131 AGAAACCAACTCAGGACCCAAAACCCTACACTCACCCAACTCAATCCAACATAACAGAGTACGAC
78344025 ACTTACGGCCATACAAAGCCTCATAA
196 ACTTACGGCCATACAAAGCCTCATAA
78344051 AAACCTTAAGAAAGACAAAGTCACCCATAGAGTACTCAATATCTTTTCTCTTCAGCTCTGCATAA
1 AAACCTTAAGAAAGACAAAGTCACCCATAGAGTACTCAATATCTTTTCTCTTCAGCTCTGCATAA
* *
78344116 GACTTCTGTCTATCAGAAACTACCTTCAGATGATCCATAATCATCCTAACCTTATCTTCAATCTC
66 GACTTCTGTCTATCAAAAACTACCTTCAGATGATCCATAATCATCCTAACATTATCTTCAATCTC
* *
78344181 AGAAACCAACTCAGGACCCAAAACCCTACATTCACCCAACTCAGTCCAACATAACAGAGTACGAC
131 AGAAACCAACTCAGGACCCAAAACCCTACACTCACCCAACTCAATCCAACATAACAGAGTACGAC
*
78344246 ACTTACGGTCATACAAAGCCTCATAA
196 ACTTACGGCCATACAAAGCCTCATAA
78344272 GGTGCCATTT
Statistics
Matches: 210, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
221 210 1.00
ACGTcount: A:0.36, C:0.29, G:0.10, T:0.25
Consensus pattern (221 bp):
AAACCTTAAGAAAGACAAAGTCACCCATAGAGTACTCAATATCTTTTCTCTTCAGCTCTGCATAA
GACTTCTGTCTATCAAAAACTACCTTCAGATGATCCATAATCATCCTAACATTATCTTCAATCTC
AGAAACCAACTCAGGACCCAAAACCCTACACTCACCCAACTCAATCCAACATAACAGAGTACGAC
ACTTACGGCCATACAAAGCCTCATAA
Found at i:78348123 original size:13 final size:13
Alignment explanation
Indices: 78348105--78348150 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
78348095 AATAATATTT
78348105 ATAATATAAATAC
1 ATAATATAAATAC
*
78348118 ATAATA-ATAATGAT
1 ATAATATA-AAT-AC
78348132 ATAATATAAATAC
1 ATAATATAAATAC
78348145 ATAATA
1 ATAATA
78348151 ATATAAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
12 1 0.04
13 16 0.57
14 10 0.36
15 1 0.04
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (13 bp):
ATAATATAAATAC
Found at i:78348124 original size:16 final size:16
Alignment explanation
Indices: 78348105--78348157 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
78348095 AATAATATTT
78348105 ATAATATAAATACATA
1 ATAATATAAATACATA
*
78348121 AT-A-AT-AAT-GAT-
1 ATAATATAAATACATA
78348132 ATAATATAAATACATA
1 ATAATATAAATACATA
78348148 ATAATATAAA
1 ATAATATAAA
78348158 AGAAATAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
11 2 0.07
12 3 0.10
13 5 0.17
14 5 0.17
15 3 0.10
16 12 0.40
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (16 bp):
ATAATATAAATACATA
Found at i:78348163 original size:21 final size:20
Alignment explanation
Indices: 78348105--78348165 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 20
78348095 AATAATATTT
78348105 ATAATATAAATACATAATAATA
1 ATAATATAAA-ACA-AATAATA
* * *
78348127 ATGATATAATATAAATACATA
1 ATAATATAAAACAAATA-ATA
*
78348148 ATAATATAAAAGAAATAA
1 ATAATATAAAACAAATAA
78348166 AACATAAAGA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
20 5 0.16
21 19 0.59
22 8 0.25
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (20 bp):
ATAATATAAAACAAATAATA
Found at i:78348164 original size:27 final size:27
Alignment explanation
Indices: 78348107--78348172 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
78348097 TAATATTTAT
* * *
78348107 AATATAAATACATAATAATAATGATAT
1 AATATAAATACATAATAATAATAAAAA
*
78348134 AATATAAATACATAATAAT-ATAAAAG
1 AATATAAATACATAATAATAATAAAAA
78348160 AA-ATAAA-ACATAA
1 AATATAAATACATAA
78348173 AGAAAAAGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
24 6 0.17
25 5 0.14
26 6 0.17
27 19 0.53
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.27
Consensus pattern (27 bp):
AATATAAATACATAATAATAATAAAAA
Found at i:78358199 original size:47 final size:47
Alignment explanation
Indices: 78358130--78358224 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
78358120 AGAATAAAAT
78358130 TCACTATGTCGAAAATTTTAATCCTTACAAGAGGAATAGACTATGTC
1 TCACTATGTCGAAAATTTTAATCCTTACAAGAGGAATAGACTATGTC
78358177 TCACTATGTCGAAAATTTTAATCCTTACAAGAGGAATAGACTATGTC
1 TCACTATGTCGAAAATTTTAATCCTTACAAGAGGAATAGACTATGTC
78358224 T
1 T
78358225 ATTTATAGGC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.33
Consensus pattern (47 bp):
TCACTATGTCGAAAATTTTAATCCTTACAAGAGGAATAGACTATGTC
Found at i:78359153 original size:25 final size:25
Alignment explanation
Indices: 78359117--78359175 Score: 111
Period size: 25 Copynumber: 2.4 Consensus size: 25
78359107 TTTCATTTTA
78359117 TTTTGA-TTACCCAACTATTAATTT
1 TTTTGACTTACCCAACTATTAATTT
78359141 TTTTGACTTACCCAACTATTAATTT
1 TTTTGACTTACCCAACTATTAATTT
78359166 TTTTGACTTA
1 TTTTGACTTA
78359176 GTCATTAAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 6 0.18
25 28 0.82
ACGTcount: A:0.27, C:0.17, G:0.05, T:0.51
Consensus pattern (25 bp):
TTTTGACTTACCCAACTATTAATTT
Found at i:78367292 original size:18 final size:19
Alignment explanation
Indices: 78367253--78367294 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 19
78367243 ATGGAGGTAA
78367253 TAAAATGTCCATAATAAAAT
1 TAAAATGT-CATAATAAAAT
78367273 TAAAATGT-ATAA-AAATAT
1 TAAAATGTCATAATAAA-AT
78367291 TAAA
1 TAAA
78367295 GTAAAGCTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 3 0.14
18 10 0.48
20 8 0.38
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.31
Consensus pattern (19 bp):
TAAAATGTCATAATAAAAT
Found at i:78370870 original size:5 final size:5
Alignment explanation
Indices: 78370862--78370909 Score: 80
Period size: 5 Copynumber: 9.6 Consensus size: 5
78370852 ATTTTATGTT
78370862 ATATA ATATA ATATA ATA-A TATATA ATATA ATATA ATATA ATATA ATA
1 ATATA ATATA ATATA ATATA -ATATA ATATA ATATA ATATA ATATA ATA
78370910 ACATAATATC
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
4 1 0.02
5 39 0.95
6 1 0.02
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:78372488 original size:22 final size:22
Alignment explanation
Indices: 78372461--78372506 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
78372451 GGTAAATGTG
78372461 TGAAATAATTGAAATTGTGAGA
1 TGAAATAATTGAAATTGTGAGA
78372483 TGAAATAATTGAAATTGTGAGA
1 TGAAATAATTGAAATTGTGAGA
78372505 TG
1 TG
78372507 CTATAGGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.43, C:0.00, G:0.24, T:0.33
Consensus pattern (22 bp):
TGAAATAATTGAAATTGTGAGA
Found at i:78373015 original size:48 final size:48
Alignment explanation
Indices: 78372963--78373231 Score: 199
Period size: 48 Copynumber: 5.6 Consensus size: 48
78372953 TATGTGTGCT
* *
78372963 AGTGTAAGACCATGTCTGGGACATGGCGTTAGCCACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTAGCCATGATATGAGAGCC
* * ** * * *
78373011 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGATCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTAGCCATGATATGAGAGCC
* * * * *
78373059 AGTGTAAGACTATGT-TCGGGACATGGCATT-GACATTGATATGTGTGCT
1 AGTGTAAGACCATGTCT-GGGACATGGCATTAGCCA-TGATATGAGAGCC
* * * * * * *
78373107 AGTGTAAGACCATGTTTGGGTCATGGCATCAG-TATTA-AGAGAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATTAGCCATGATA-TG-AGAGCC
* * *
78373155 AGTGTAAGACCATGTCTGGGACATGGTATTGGCC-TCGACATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTAGCCAT-GATATG-AGAGCC
* **
78373203 AATGTAAGACCATGTCTAAGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
78373232 CTATAATTTA
Statistics
Matches: 171, Mismatches: 41, Indels: 18
0.74 0.18 0.08
Matches are distributed among these distances:
46 1 0.01
47 6 0.04
48 158 0.92
49 5 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTAGCCATGATATGAGAGCC
Found at i:78373228 original size:96 final size:95
Alignment explanation
Indices: 78372960--78373232 Score: 248
Period size: 96 Copynumber: 2.8 Consensus size: 95
78372950 TGATATGTGT
* * *
78372960 GCTAGTGTAAGACCATGTCTGGGACATGGCGTTAGCCACGATATG-AGAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGATATGTA-AGCCAGTGTAAGACCAT
* * * *
78373024 GTTTGGAACATGGCATCGGCAATGTTATGAGA
65 GTTAGG-ACATGGCATCAGCAATGTAAAGAGA
* * * * * * ** *
78373056 TCCAGTGTAAGACTATGT-TCGGGACATGGCATTGACATTGATATGTGTGCTAGTGTAAGACCAT
1 GCTAGTGTAAGACCATGTCT-GGGACATGGCATTGGCCTCGATATGTAAGCCAGTGTAAGACCAT
* * *
78373120 GTTTGGGTCATGGCATCAG-TAT-TAAGAGAAGA
65 G-TTAGGACATGGCATCAGCAATGTAA-AG-AGA
* * *
78373152 GCTAGTGTAAGACCATGTCTGGGACATGGTATTGGCCTCGACATGTAAGCCAATGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGATATGTAAGCCAGTGTAAGACCATG
*
78373217 TCTAAGACATGGCATC
66 T-TAGGACATGGCATC
78373233 TATAATTTAC
Statistics
Matches: 137, Mismatches: 33, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
94 2 0.01
95 5 0.04
96 125 0.91
97 5 0.04
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (95 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGATATGTAAGCCAGTGTAAGACCATG
TTAGGACATGGCATCAGCAATGTAAAGAGA
Found at i:78381013 original size:18 final size:18
Alignment explanation
Indices: 78380990--78381027 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
78380980 AATATATATT
78380990 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
78381008 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
78381026 AA
1 AA
78381028 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:78381020 original size:13 final size:13
Alignment explanation
Indices: 78381004--78381028 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78380994 CAAGTACCCA
78381004 ACCCAACCCAATT
1 ACCCAACCCAATT
78381017 ACCCAACCCAAT
1 ACCCAACCCAAT
78381029 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:78381106 original size:7 final size:6
Alignment explanation
Indices: 78381053--78381105 Score: 61
Period size: 6 Copynumber: 8.5 Consensus size: 6
78381043 ATAATTTAAT
* * *
78381053 AAATAA AAATAA AAATCTAA AACTAA AACTAA AACTAA AAATAA AAATAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAATAA
78381103 AAA
1 AAA
78381106 ACATAAAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
6 38 0.88
8 5 0.12
ACGTcount: A:0.75, C:0.08, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:78381139 original size:9 final size:9
Alignment explanation
Indices: 78381125--78381192 Score: 91
Period size: 9 Copynumber: 7.6 Consensus size: 9
78381115 TTTATACAAA
78381125 TAATTCGGT
1 TAATTCGGT
78381134 TAATTCGGT
1 TAATTCGGT
*
78381143 TAATTCAGT
1 TAATTCGGT
* *
78381152 TAATTTGGG
1 TAATTCGGT
*
78381161 TAATTCGGG
1 TAATTCGGT
78381170 TAATTCGGT
1 TAATTCGGT
*
78381179 TGATTCGGT
1 TAATTCGGT
78381188 TAATT
1 TAATT
78381193 TTATACTTAT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.24, C:0.09, G:0.24, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:78381174 original size:36 final size:36
Alignment explanation
Indices: 78381125--78381193 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
78381115 TTTATACAAA
*
78381125 TAATTCGGTTAATTCGGTTAATTCAGTTAATTTGGG
1 TAATTCGGGTAATTCGGTTAATTCAGTTAATTTGGG
* *
78381161 TAATTCGGGTAATTCGGTTGATTCGGTTAATTT
1 TAATTCGGGTAATTCGGTTAATTCAGTTAATTT
78381194 TATACTTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.23, C:0.09, G:0.23, T:0.45
Consensus pattern (36 bp):
TAATTCGGGTAATTCGGTTAATTCAGTTAATTTGGG
Found at i:78382093 original size:5 final size:5
Alignment explanation
Indices: 78382085--78382176 Score: 152
Period size: 5 Copynumber: 18.4 Consensus size: 5
78382075 TTTATGTTAC
78382085 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
78382135 ATAAT ATAAT AT-A- ATAAT ATAATAT ATAAT ATAAT ATAAT AT
1 ATAAT ATAAT ATAAT ATAAT AT-A-AT ATAAT ATAAT ATAAT AT
78382177 CATTTACTTA
Statistics
Matches: 83, Mismatches: 0, Indels: 8
0.91 0.00 0.09
Matches are distributed among these distances:
3 2 0.02
4 2 0.02
5 73 0.88
6 2 0.02
7 4 0.05
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:78397809 original size:12 final size:12
Alignment explanation
Indices: 78397794--78397818 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
78397784 AGTTCACCGA
78397794 GGAGTGAAGGGG
1 GGAGTGAAGGGG
78397806 GGAGTGAAGGGG
1 GGAGTGAAGGGG
78397818 G
1 G
78397819 TGATGGTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.68, T:0.08
Consensus pattern (12 bp):
GGAGTGAAGGGG
Found at i:78400061 original size:21 final size:20
Alignment explanation
Indices: 78400036--78400075 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
78400026 TCTTTTTGCG
78400036 GGTTTATATTTAGGATTTATT
1 GGTTTATATTT-GGATTTATT
* *
78400057 GGTTTCTATTTGGTTTTAT
1 GGTTTATATTTGGATTTAT
78400076 ATTAAAAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.17, C:0.03, G:0.20, T:0.60
Consensus pattern (20 bp):
GGTTTATATTTGGATTTATT
Found at i:78402326 original size:24 final size:24
Alignment explanation
Indices: 78402299--78402346 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
78402289 TCAGTTTTGA
78402299 ATTCTAGGAAGTCTTTTAGATGAG
1 ATTCTAGGAAGTCTTTTAGATGAG
78402323 ATTCTAGGAAGTCTTTTAGATGAG
1 ATTCTAGGAAGTCTTTTAGATGAG
78402347 GAATAGTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.08, G:0.25, T:0.38
Consensus pattern (24 bp):
ATTCTAGGAAGTCTTTTAGATGAG
Found at i:78409479 original size:41 final size:40
Alignment explanation
Indices: 78409331--78409534 Score: 209
Period size: 40 Copynumber: 5.1 Consensus size: 40
78409321 CGGAATTTAA
* *
78409331 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
78409371 CCAGTTAGAGTAACTCGCACAAATGCCTTCGGGACGT-GC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
78409410 CCGGATATAGTAACTTGCACAAAGGCCTTTGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78409450 CCGGGATATAGTAGCTCGCACGAATGCCTTCGGGACTTAGC
1 CC-GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** * *
78409491 CCGGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCT-TCGGGACTTAGC
78409531 CCGG
1 CCGG
78409535 TTATCATCCG
Statistics
Matches: 136, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
39 36 0.26
40 65 0.48
41 35 0.26
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:78410878 original size:10 final size:10
Alignment explanation
Indices: 78410851--78410886 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
78410841 AACATGAGAG
78410851 CTTTCTTTTT
1 CTTTCTTTTT
*
78410861 ATTT-TTTTT
1 CTTTCTTTTT
78410870 CTTTCTTTTT
1 CTTTCTTTTT
78410880 CTTTCTT
1 CTTTCTT
78410887 CTATTCGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.81
Consensus pattern (10 bp):
CTTTCTTTTT
Found at i:78417564 original size:40 final size:40
Alignment explanation
Indices: 78417514--78417742 Score: 234
Period size: 40 Copynumber: 5.7 Consensus size: 40
78417504 GCTACTCACT
* *
78417514 CAAATGCCTTCGGGACATAGCCCGGTTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
78417554 CAATTGCCTTCGGGACTTAGCCCGGATT-TAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
78417594 CAAATGCCTTCGGGACGT-GCCCGGATATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
78417633 CAAAGGCCTTTGGGACTTAGCCCGGGTTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGTTATAGTAACTCGCA
* * ** * *
78417674 CGAATGCCTTCGGAACTTAGCCCGGAATTA-A-CCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGG--TTATAGTAACTCGCA
78417714 CAAATG-CTCTCGGGACTTAGCCCGGTTAT
1 CAAATGCCT-TCGGGACTTAGCCCGGTTAT
78417743 CATCCGAACA
Statistics
Matches: 155, Mismatches: 26, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
38 4 0.03
39 33 0.21
40 79 0.51
41 36 0.23
42 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:78417634 original size:79 final size:81
Alignment explanation
Indices: 78417514--78417699 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
78417504 GCTACTCACT
* **
78417514 CAAATGCCTTCGGGACATAGCCCGGTTAGAGTAACTCGCACAATTGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATAGAGTAACTCGCACAAAGGCCTTCGGGACTTAGCCCGG
*
78417579 ATT-TAGTAATTCGCA
66 ATTATAGTAACTCGCA
* * * *
78417594 CAAATGCCTTCGGGACGT-GCCCGGATATAGTAACTTGCACAAAGGCCTTTGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATAGAGTAACTCGCACAAAGGCCTTCGGGACTTAGCCCGG
* *
78417658 GTTATAGTAGCTCGCA
66 ATTATAGTAACTCGCA
* * *
78417674 CGAATGCCTTCGGAACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGA
78417700 ATTAACCACT
Statistics
Matches: 91, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 42 0.46
80 42 0.46
81 7 0.08
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACATAGCCCGGATAGAGTAACTCGCACAAAGGCCTTCGGGACTTAGCCCGG
ATTATAGTAACTCGCA
Found at i:78417718 original size:120 final size:120
Alignment explanation
Indices: 78417514--78417738 Score: 276
Period size: 120 Copynumber: 1.9 Consensus size: 120
78417504 GCTACTCACT
* *
78417514 CAAATGCCTTCGGGACATAGCCCGGTTAGAGTAACTCGCACAATTGCCTTCGGGACTTAGCCCGG
1 CAAAGGCCTTCGGGACATAGCCCGGTTAGAGTAACTCGCACAATTGCCTTCGGAACTTAGCCCGG
* ** * *
78417579 ATTTAGTAATTCGCACAAATGC-CTTCGGGACGT-GCCCGGATATAGTAACTTGCA
66 AATTAACAACTAGCACAAATGCTC-TCGGGACGTAGCCCGGATATAGTAACTTGCA
* * * *
78417633 CAAAGGCCTTTGGGACTTAGCCCGGGTTATAGTAGCTCGCACGAA-TGCCTTCGGAACTTAGCCC
1 CAAAGGCCTTCGGGACATAGCCC-GGTTAGAGTAACTCGCAC-AATTGCCTTCGGAACTTAGCCC
* * *
78417697 GGAATTAACCACTAGCTCAAATGCTCTCGGGACTTAGCCCGG
64 GGAATTAACAACTAGCACAAATGCTCTCGGGACGTAGCCCGG
78417739 TTATCATCCG
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
119 20 0.23
120 59 0.67
121 9 0.10
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (120 bp):
CAAAGGCCTTCGGGACATAGCCCGGTTAGAGTAACTCGCACAATTGCCTTCGGAACTTAGCCCGG
AATTAACAACTAGCACAAATGCTCTCGGGACGTAGCCCGGATATAGTAACTTGCA
Found at i:78419079 original size:10 final size:10
Alignment explanation
Indices: 78419061--78419097 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
78419051 AACATGAGAG
78419061 CTTTCTTTTT
1 CTTTCTTTTT
*
78419071 CTTTTTTTTT
1 CTTTCTTTTT
78419081 CTTTCTTTTT
1 CTTTCTTTTT
78419091 CTTTCTT
1 CTTTCTT
78419098 CTATTCGGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (10 bp):
CTTTCTTTTT
Found at i:78419087 original size:14 final size:14
Alignment explanation
Indices: 78419068--78419097 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
78419058 GAGCTTTCTT
*
78419068 TTTCTTTTTTTTTC
1 TTTCTTTTTCTTTC
78419082 TTTCTTTTTCTTTC
1 TTTCTTTTTCTTTC
78419096 TT
1 TT
78419098 CTATTCGGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTCTTTTTCTTTC
Found at i:78439358 original size:37 final size:37
Alignment explanation
Indices: 78439308--78439387 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
78439298 CTTATTACGA
* *
78439308 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
*
78439345 AGTCTTACCCGGACAAAATTCCCACACGCAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
*
78439382 GGTCTT
1 AGTCTT
78439388 TAGAGCCCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:78439577 original size:47 final size:47
Alignment explanation
Indices: 78439506--78440087 Score: 959
Period size: 47 Copynumber: 12.4 Consensus size: 47
78439496 CCCTTCGGGA
** * * *
78439506 CTTATCACATTTATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACA-TGTTCACTTTCATCACATTGGCCATTCGGC
* * * * *
78439553 CTTATCTCACATACACATGCTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
* *
78439600 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
78439647 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
*
78439694 TTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
* *
78439741 CTTATCACACATACACACGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
78439788 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
* *
78439835 CTTATCACACATACACACGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
78439882 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
* *
78439929 CTTATCACACATACACACGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
78439976 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
78440023 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
1 CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
*
78440070 CCTATTCACACATATACA
1 CTTA-TCACACATATACA
78440088 CTTTCACATT
Statistics
Matches: 505, Mismatches: 28, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 491 0.97
48 13 0.03
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACACATATACATGTTCACTTTCATCACATTGGCCATTCGGC
Done.