Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 237 of 344
Found at i:78439679 original size:25 final size:25
Alignment explanation
Indices: 78439650--78439727 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
78439640 ATTCGGCCTT
78439650 ATCACACATATACATGTTCACTTTC
1 ATCACACATATACATGTTCACTTTC
* *** *
78439675 ATCACA-TTGGCCA--TTCGGCTTT-
1 ATCACACATATACATGTTC-ACTTTC
78439697 ATCACACATATACATGTTCACTTTC
1 ATCACACATATACATGTTCACTTTC
78439722 ATCACA
1 ATCACA
78439728 TTGGCCATTC
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 9 0.24
23 7 0.18
24 7 0.18
25 15 0.39
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.35
Consensus pattern (25 bp):
ATCACACATATACATGTTCACTTTC
Found at i:78440008 original size:25 final size:25
Alignment explanation
Indices: 78439979--78440056 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
78439969 ATTCGGCCTT
78439979 ATCACACATATACATGTTCACTTTC
1 ATCACACATATACATGTTCACTTTC
* *** * *
78440004 ATCACA-TTGGCCA--TTCGGCCTT-
1 ATCACACATATACATGTTC-ACTTTC
78440026 ATCACACATATACATGTTCACTTTC
1 ATCACACATATACATGTTCACTTTC
78440051 ATCACA
1 ATCACA
78440057 TTGGCCATTC
Statistics
Matches: 36, Mismatches: 12, Indels: 10
0.62 0.21 0.17
Matches are distributed among these distances:
22 9 0.25
23 6 0.17
24 6 0.17
25 15 0.42
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (25 bp):
ATCACACATATACATGTTCACTTTC
Found at i:78444037 original size:40 final size:40
Alignment explanation
Indices: 78443982--78444203 Score: 367
Period size: 40 Copynumber: 5.6 Consensus size: 40
78443972 TATTCGGATG
* *
78443982 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
78444022 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
78444062 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
78444102 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
78444142 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
78444182 ATATCC-GGCTAAATCCTGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
78444204 TACTTGGGTT
Statistics
Matches: 174, Mismatches: 7, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
39 13 0.07
40 159 0.91
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:78448481 original size:27 final size:27
Alignment explanation
Indices: 78448443--78448522 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
78448433 AACACGTCGG
*
78448443 GAAAGAAAAGCCTTTGTGGCGAAATGT
1 GAAAGAAAAGCCTTTGTGGCGAAATAT
* *
78448470 GAAAGAAAAGCCTTTTTGGTGAAATAT
1 GAAAGAAAAGCCTTTGTGGCGAAATAT
* *
78448497 GAAATG-AATGCCTTTGTGTC-AAATAT
1 GAAA-GAAAAGCCTTTGTGGCGAAATAT
78448523 TGAATGGATC
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 6 0.13
27 38 0.84
28 1 0.02
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.29
Consensus pattern (27 bp):
GAAAGAAAAGCCTTTGTGGCGAAATAT
Found at i:78452579 original size:29 final size:27
Alignment explanation
Indices: 78452491--78452581 Score: 83
Period size: 29 Copynumber: 3.2 Consensus size: 27
78452481 TATCTGTACC
** *
78452491 TGGCCCATTAAGCCCAATCGTATTCATA
1 TGGCCCATT-AGCCCAATCACATTTATA
* * *
78452519 TGACCCATTAGGCCCAAATCACCTGTATA
1 TGGCCCATTA-GCCC-AATCACATTTATA
78452548 TGGCCCATTAGTCCCAATTCACATTTATA
1 TGGCCCATTAG-CCCAA-TCACATTTATA
78452577 TGGCC
1 TGGCC
78452582 TGTTCGGCCC
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
27 1 0.02
28 15 0.30
29 34 0.68
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (27 bp):
TGGCCCATTAGCCCAATCACATTTATA
Found at i:78455950 original size:38 final size:39
Alignment explanation
Indices: 78455803--78455960 Score: 282
Period size: 39 Copynumber: 4.1 Consensus size: 39
78455793 ATGCAAGACA
78455803 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
78455842 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
78455881 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
78455920 CTGGAAATGTATCC-GGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
78455958 CTG
1 CTG
78455961 ATAATATAAT
Statistics
Matches: 115, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
38 25 0.22
39 90 0.78
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:78468156 original size:29 final size:28
Alignment explanation
Indices: 78468096--78468179 Score: 87
Period size: 28 Copynumber: 3.0 Consensus size: 28
78468086 CCTGTACCTA
* **
78468096 GCCCATTAAGCCCAATCGTATTCATATC
1 GCCCATTAGGCCCAATCACATTCATATC
* *
78468124 GCCCATTAGGCCCAAATCACATTTATATG
1 GCCCATTAGGCCC-AATCACATTCATATC
* * *
78468153 GCCCGTTCGGCCCAGTCACATTCATAT
1 GCCCATTAGGCCCAATCACATTCATAT
78468180 TCATGCTCAC
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
28 24 0.52
29 22 0.48
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.27
Consensus pattern (28 bp):
GCCCATTAGGCCCAATCACATTCATATC
Found at i:78471231 original size:25 final size:25
Alignment explanation
Indices: 78471203--78471250 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
78471193 CTTTAATTGT
* *
78471203 CAATTTGGTAATTTTTTTATTTATG
1 CAATTTAGTAATTTTTTCATTTATG
*
78471228 CAATTTAGTCATTTTTTCATTTA
1 CAATTTAGTAATTTTTTCATTTA
78471251 AACCCCAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.08, G:0.08, T:0.58
Consensus pattern (25 bp):
CAATTTAGTAATTTTTTCATTTATG
Found at i:78479675 original size:27 final size:27
Alignment explanation
Indices: 78479640--78479791 Score: 155
Period size: 27 Copynumber: 5.6 Consensus size: 27
78479630 TTAAATTGTA
78479640 TAGCACTAAGTGTGCGATATGACTATG
1 TAGCACTAAGTGTGCGATATGACTATG
* * *
78479667 TTGCACTAAGTGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCGATATGACTATG
* *
78479694 -ATGCACAAAGTGTGCGA-ATTGACCATG
1 TA-GCACTAAGTGTGCGATA-TGACTATG
** *
78479721 CGGCACTAAGTGTGCGAGTTTGACTATG
1 TAGCACTAAGTGTGCGA-TATGACTATG
* * *
78479749 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGATATGACTATG
*
78479776 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
78479792 GGCTCAATAT
Statistics
Matches: 104, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
26 1 0.01
27 81 0.78
28 22 0.21
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGATATGACTATG
Found at i:78481765 original size:826 final size:826
Alignment explanation
Indices: 78480174--78481808 Score: 3261
Period size: 826 Copynumber: 2.0 Consensus size: 826
78480164 TCCATTTTGT
*
78480174 TTCCTCTTGTGATAATGTTATTGATGGATGGTAGTGCATTGCTTTTGACTTACTGAGTTATAAAC
1 TTCCTCTTGTGATAATGTTATTGATGGATGGTAGTGCATTGCTTATGACTTACTGAGTTATAAAC
78480239 TCACTCGGTGTTTCCTTGTCACCCATTATAGGTTGCTTGGACTCATCTATTTTTTGCGGGGTCAG
66 TCACTCGGTGTTTCCTTGTCACCCATTATAGGTTGCTTGGACTCATCTATTTTTTGCGGGGTCAG
78480304 GCCGTCATCGAAGTCATCACACCGGATAGCAAGTTTTGGTATTTTCTTCTTAGTTGGCTTAGAAG
131 GCCGTCATCGAAGTCATCACACCGGATAGCAAGTTTTGGTATTTTCTTCTTAGTTGGCTTAGAAG
78480369 AACATTTTGGCATGTATAAGCTATTACGTTGTGTTTGAATTTTGGCATGTAAACTTTAAGCCATG
196 AACATTTTGGCATGTATAAGCTATTACGTTGTGTTTGAATTTTGGCATGTAAACTTTAAGCCATG
78480434 CGAAAATGGCACGAATGTTCGATTGAGTTGGATCAAGGGTAGGCATGAGATGGACCTAGTTACTT
261 CGAAAATGGCACGAATGTTCGATTGAGTTGGATCAAGGGTAGGCATGAGATGGACCTAGTTACTT
78480499 TCGTAACAGATGCTGGCAGCAGCAGTGTCATGAGATTGAAAAATCACTAAAAATAGTAGGAGTGG
326 TCGTAACAGATGCTGGCAGCAGCAGTGTCATGAGATTGAAAAATCACTAAAAATAGTAGGAGTGG
78480564 AATTAATTGATGAATAAATTATGTAATCGAAGCTCGATGAGTCTGCTTTCATGAGGAAGTAACGA
391 AATTAATTGATGAATAAATTATGTAATCGAAGCTCGATGAGTCTGCTTTCATGAGGAAGTAACGA
78480629 AAAGATCATATGAGCAGTATATTAAGAGATAATCAGATTATAGTGGGACAGGGCCAGAACGGTTT
456 AAAGATCATATGAGCAGTATATTAAGAGATAATCAGATTATAGTGGGACAGGGCCAGAACGGTTT
78480694 CTGGATTCCCTGCTCCGACTTTGGAAATTCATTACAAATTAACCAGAGATAATTAGGGGTCGTAC
521 CTGGATTCCCTGCTCCGACTTTGGAAATTCATTACAAATTAACCAGAGATAATTAGGGGTCGTAC
78480759 CATATATGTACAGATTCCTCTATGAGTCTAGTTTTCATAGAAACAAACGGCATCAGTATTGAAGC
586 CATATATGTACAGATTCCTCTATGAGTCTAGTTTTCATAGAAACAAACGGCATCAGTATTGAAGC
78480824 CCCGTGTAGGGAGATATCCAAGTCGTAATGGGAAAAGGTCAGTGTAGTCGATCCCTGCAACATGG
651 CCCGTGTAGGGAGATATCCAAGTCGTAATGGGAAAAGGTCAGTGTAGTCGATCCCTGCAACATGG
78480889 GAGACTTTGACTAATAAACTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGAT
716 GAGACTTTGACTAATAAACTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGAT
78480954 GGGCACATGAGTCTAGTTTCTGGGAAAAAATACATAGATGTACAGA
781 GGGCACATGAGTCTAGTTTCTGGGAAAAAATACATAGATGTACAGA
78481000 TTCCTCTTGTGATAATGTTATTGATGGATGGTAGTGCATTGCTTATGACTTACTGAGTTATAAAC
1 TTCCTCTTGTGATAATGTTATTGATGGATGGTAGTGCATTGCTTATGACTTACTGAGTTATAAAC
78481065 TCACTCGGTGTTTCCTTGTCACCCATTATAGGTTGCTTGGACTCATCTATTTTTTGCGGGGTCAG
66 TCACTCGGTGTTTCCTTGTCACCCATTATAGGTTGCTTGGACTCATCTATTTTTTGCGGGGTCAG
78481130 GCCGTCATCGAAGTCATCACACCGGATAGCAAGTTTTGGTATTTTCTTCTTAGTTGGCTTAGAAG
131 GCCGTCATCGAAGTCATCACACCGGATAGCAAGTTTTGGTATTTTCTTCTTAGTTGGCTTAGAAG
78481195 AACATTTTGGCATGTATAAGCTATTACGTTGTGTTTGAATTTTGGCATGTAAACTTTAAGCCATG
196 AACATTTTGGCATGTATAAGCTATTACGTTGTGTTTGAATTTTGGCATGTAAACTTTAAGCCATG
78481260 CGAAAATGGCACGAATGTTCGATTGAGTTGGATCAAGGGTAGGCATGAGATGGACCTAGTTACTT
261 CGAAAATGGCACGAATGTTCGATTGAGTTGGATCAAGGGTAGGCATGAGATGGACCTAGTTACTT
78481325 TCGTAACAGATGCTGGCAGCAGCAGTGTCATGAGATTGAAAAATCACTAAAAATAGTAGGAGTGG
326 TCGTAACAGATGCTGGCAGCAGCAGTGTCATGAGATTGAAAAATCACTAAAAATAGTAGGAGTGG
78481390 AATTAATTGATGAATAAATTATGTAATCGAAGCTCGATGAGTCTGCTTTCATGAGGAAGTAACGA
391 AATTAATTGATGAATAAATTATGTAATCGAAGCTCGATGAGTCTGCTTTCATGAGGAAGTAACGA
78481455 AAAGATCATATGAGCAGTATATTAAGAGATAATCAGATTATAGTGGGACAGGGCCAGAACGGTTT
456 AAAGATCATATGAGCAGTATATTAAGAGATAATCAGATTATAGTGGGACAGGGCCAGAACGGTTT
78481520 CTGGATTCCCTGCTCCGACTTTGGAAATTCATTACAAATTAACCAGAGATAATTAGGGGTCGTAC
521 CTGGATTCCCTGCTCCGACTTTGGAAATTCATTACAAATTAACCAGAGATAATTAGGGGTCGTAC
78481585 CATATATGTACAGATTCCTCTATGAGTCTAGTTTTCATAGAAACAAACGGCATCAGTATTGAAGC
586 CATATATGTACAGATTCCTCTATGAGTCTAGTTTTCATAGAAACAAACGGCATCAGTATTGAAGC
78481650 CCCGTGTAGGGAGATATCCAAGTCGTAATGGGAAAAGGTCAGTGTAGTCGATCCCTGCAACATGG
651 CCCGTGTAGGGAGATATCCAAGTCGTAATGGGAAAAGGTCAGTGTAGTCGATCCCTGCAACATGG
78481715 GAGACTTTGACTAATAAACTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGAT
716 GAGACTTTGACTAATAAACTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGAT
78481780 GGGCACATGAGTCTAGTTTCTGGGAAAAA
781 GGGCACATGAGTCTAGTTTCTGGGAAAAA
78481809 TTACGAAACT
Statistics
Matches: 808, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
826 808 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (826 bp):
TTCCTCTTGTGATAATGTTATTGATGGATGGTAGTGCATTGCTTATGACTTACTGAGTTATAAAC
TCACTCGGTGTTTCCTTGTCACCCATTATAGGTTGCTTGGACTCATCTATTTTTTGCGGGGTCAG
GCCGTCATCGAAGTCATCACACCGGATAGCAAGTTTTGGTATTTTCTTCTTAGTTGGCTTAGAAG
AACATTTTGGCATGTATAAGCTATTACGTTGTGTTTGAATTTTGGCATGTAAACTTTAAGCCATG
CGAAAATGGCACGAATGTTCGATTGAGTTGGATCAAGGGTAGGCATGAGATGGACCTAGTTACTT
TCGTAACAGATGCTGGCAGCAGCAGTGTCATGAGATTGAAAAATCACTAAAAATAGTAGGAGTGG
AATTAATTGATGAATAAATTATGTAATCGAAGCTCGATGAGTCTGCTTTCATGAGGAAGTAACGA
AAAGATCATATGAGCAGTATATTAAGAGATAATCAGATTATAGTGGGACAGGGCCAGAACGGTTT
CTGGATTCCCTGCTCCGACTTTGGAAATTCATTACAAATTAACCAGAGATAATTAGGGGTCGTAC
CATATATGTACAGATTCCTCTATGAGTCTAGTTTTCATAGAAACAAACGGCATCAGTATTGAAGC
CCCGTGTAGGGAGATATCCAAGTCGTAATGGGAAAAGGTCAGTGTAGTCGATCCCTGCAACATGG
GAGACTTTGACTAATAAACTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGAT
GGGCACATGAGTCTAGTTTCTGGGAAAAAATACATAGATGTACAGA
Found at i:78490570 original size:42 final size:44
Alignment explanation
Indices: 78490447--78490603 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 44
78490437 GTTATCGAGT
* *
78490447 TGTGATTACATGTAAGACCATGTCTGGGACATTAGCATTGTAT-
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTAGCATCGTATA
*
78490490 TGTGATTACGTGTAAGACCATGTTTGGGACATTAGCATCGTATA
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTAGCATCGTATA
* * * * *
78490534 T-TGATT-CGTGTAAGACCCTGTCTAGGATAATGGCATCG-ATA
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTAGCATCGTATA
* ** * *
78490575 TGTGATAACAAGTAAGACAATATCTGGGA
1 TGTGATTACGTGTAAGACCATGTCTGGGA
78490604 TATGGCATTG
Statistics
Matches: 95, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 4 0.04
42 30 0.32
43 60 0.63
44 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (44 bp):
TGTGATTACGTGTAAGACCATGTCTGGGACATTAGCATCGTATA
Found at i:78490735 original size:43 final size:44
Alignment explanation
Indices: 78490689--78490837 Score: 173
Period size: 43 Copynumber: 3.5 Consensus size: 44
78490679 GTTATCGAGT
*
78490689 TGTGATTACATGTAAGACCATGTCT-GGAACATTGGCATTGTAT-
1 TGTGATTACATGTAAGACCATGTCTAGG-ACATTGGCATCGTATA
** * *
78490732 TGTGATTATGTGTAAGACCATTTCTAGGACATTGGCATCATATA
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTATA
* * *
78490776 T-TGATT-CGTGTAAGACCTTGTCTAGGACAGTGGCATCG-ATA
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTATA
*
78490817 TGTGATAACATGTAAGACCAT
1 TGTGATTACATGTAAGACCAT
78490838 TTTTGGGATA
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
41 4 0.04
42 31 0.35
43 51 0.57
44 3 0.03
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.34
Consensus pattern (44 bp):
TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTATA
Found at i:78490812 original size:242 final size:241
Alignment explanation
Indices: 78490376--78490859 Score: 772
Period size: 242 Copynumber: 2.0 Consensus size: 241
78490366 CAAAGTTACA
* *
78490376 ACATCTGAAAGTCCCTTACAAACCTTAGAAATAGCATAGGATACGAATGTCATGACATTAGGTTA
1 ACATATGAAAGTCCCGTACAAACCTTAGAAATAGCATAGGATACGAATGTCATGACATTAGGTTA
*
78490441 TCGAGTTGTGATTACATGTAAGACCATGTCTGGGACATTAGCATTGTATTGTGATTACGTGTAAG
66 TCGAGTTGTGATTACATGTAAGACCATGTCTGGAACATTAGCATTGTATTGTGATTACGTGTAAG
* * *
78490506 ACCATGTTTGGGACATTAGCATCGTATATTGATTCGTGTAAGACCCTGTCTAGGATAATGGCATC
131 ACCATGTTTAGGACATTAGCATCATATATTGATTCGTGTAAGACCCTGTCTAGGACAATGGCATC
78490571 GATATGTGATAACAAGTAAGACAATATCTGGGATATGGCATTGTACG
196 GATATGTGATAACAAGTAAGACAATATCTGGGATAT-GCATTGTACG
* * * *
78490618 ACATATGAAAGTCTCGTACGAACCTTTGGAATAGCATAGGATACGAATGTCATGACATTAGGTTA
1 ACATATGAAAGTCCCGTACAAACCTTAGAAATAGCATAGGATACGAATGTCATGACATTAGGTTA
* *
78490683 TCGAGTTGTGATTACATGTAAGACCATGTCTGGAACATTGGCATTGTATTGTGATTATGTGTAAG
66 TCGAGTTGTGATTACATGTAAGACCATGTCTGGAACATTAGCATTGTATTGTGATTACGTGTAAG
* * *
78490748 ACCAT-TTCTAGGACATTGGCATCATATATTGATTCGTGTAAGACCTTGTCTAGGACAGTGGCAT
131 ACCATGTT-TAGGACATTAGCATCATATATTGATTCGTGTAAGACCCTGTCTAGGACAATGGCAT
* * * *
78490812 CGATATGTGATAACATGTAAGACCATTTTTGGGATATGCATTGTACG
195 CGATATGTGATAACAAGTAAGACAATATCTGGGATATGCATTGTACG
78490859 A
1 A
78490860 GCTTATGTGA
Statistics
Matches: 222, Mismatches: 19, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
241 13 0.06
242 209 0.94
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.32
Consensus pattern (241 bp):
ACATATGAAAGTCCCGTACAAACCTTAGAAATAGCATAGGATACGAATGTCATGACATTAGGTTA
TCGAGTTGTGATTACATGTAAGACCATGTCTGGAACATTAGCATTGTATTGTGATTACGTGTAAG
ACCATGTTTAGGACATTAGCATCATATATTGATTCGTGTAAGACCCTGTCTAGGACAATGGCATC
GATATGTGATAACAAGTAAGACAATATCTGGGATATGCATTGTACG
Found at i:78505694 original size:40 final size:40
Alignment explanation
Indices: 78505646--78505953 Score: 535
Period size: 40 Copynumber: 7.7 Consensus size: 40
78505636 GCAAACACAT
* * *
78505646 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
78505686 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
78505726 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
78505766 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
78505806 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
78505846 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
78505886 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
78505926 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
78505954 TCCAATGCTC
Statistics
Matches: 255, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 255 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:78530727 original size:12 final size:12
Alignment explanation
Indices: 78530710--78530740 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
78530700 TTGAAGGTTG
*
78530710 TGAGGAGAGATT
1 TGAGGAGAGACT
78530722 TGAGGAGAGACT
1 TGAGGAGAGACT
78530734 TGAGGAG
1 TGAGGAG
78530741 GGGATCATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.03, G:0.45, T:0.19
Consensus pattern (12 bp):
TGAGGAGAGACT
Found at i:78532574 original size:40 final size:40
Alignment explanation
Indices: 78532519--78532750 Score: 263
Period size: 40 Copynumber: 5.8 Consensus size: 40
78532509 ATAACCACAA
* * * *
78532519 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
78532559 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
78532599 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * *
78532639 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * * *
78532679 GCATAAATGCCTTCGGGACTTAGCCCAGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
78532719 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
78532751 CATTCAAATG
Statistics
Matches: 180, Mismatches: 11, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 175 0.97
41 4 0.02
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:78532647 original size:80 final size:79
Alignment explanation
Indices: 78532499--78532750 Score: 319
Period size: 80 Copynumber: 3.2 Consensus size: 79
78532489 TCTTCAGAAT
* * * * * * * *
78532499 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCA
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCA
* *
78532562 CAAATGCCTTCGGGTC
64 TAAATGCCTTCGGGAC
*
78532578 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
78532643 AAATGCCTTCGGGAC
65 AAATGCCTTCGGGAC
* * * *
78532658 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCAGATAAAATCACTAGCAT
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
78532723 AAATGCCTTCGGGAC
65 AAATGCCTTCGGGAC
78532738 TTAGCCCGGATAT
1 TTAGCCCGGATAT
78532751 CATTCAAATG
Statistics
Matches: 152, Mismatches: 17, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
79 7 0.05
80 138 0.91
81 7 0.05
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (79 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCATA
AATGCCTTCGGGAC
Found at i:78535930 original size:34 final size:34
Alignment explanation
Indices: 78535887--78535954 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
78535877 TGCATTTCTA
*
78535887 TTACTGTTACCAAAATGGGTTAAAGCCCACACTG
1 TTACTGTTACCAAAATGGGCTAAAGCCCACACTG
*** *
78535921 TTACTGTTACTGTAATGGGCTAAGGCCCACACTG
1 TTACTGTTACCAAAATGGGCTAAAGCCCACACTG
78535955 ATACAGAGCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (34 bp):
TTACTGTTACCAAAATGGGCTAAAGCCCACACTG
Found at i:78541865 original size:47 final size:48
Alignment explanation
Indices: 78541702--78541877 Score: 180
Period size: 49 Copynumber: 3.6 Consensus size: 48
78541692 ATTGTGTGCT
* * * *
78541702 AGTGTAAGA-CATGTTTGGGACATGGCATCGGCACGGATATGCGA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTC-GAT-T-CGATGAGCC
* *
78541751 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTCGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGA-TTCGATGAGCC
* * * * *
78541800 AGTGTAAGAACATTTCTGGGACATGGGATCGACTTGA-TGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATTCGATGAGCC
78541847 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
78541878 GCATTATACC
Statistics
Matches: 107, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
46 4 0.04
47 31 0.29
48 5 0.05
49 41 0.38
50 22 0.21
51 4 0.04
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATTCGATGAGCC
Found at i:78545832 original size:48 final size:46
Alignment explanation
Indices: 78545764--78545895 Score: 156
Period size: 48 Copynumber: 2.8 Consensus size: 46
78545754 CCACATTATG
* *
78545764 AGAGCCAGTGTAAGACCATGTTTGGGACATGGTATCGTCATTGAGACA
1 AGAGCCAGTGTAAGA-CATGTTTGGGACATGGAATCGT-ATTAAGACA
* * * *
78545812 AGATCCAGTGTAAGATCATGTCTCGGACATGGAATCGGTATTAAGACG
1 AGAGCCAGTGTAAGA-CATGTTTGGGACATGGAATC-GTATTAAGACA
* *
78545860 AGAGCTAGTGTAAGACATGTTTGGGACATGGCATCG
1 AGAGCCAGTGTAAGACATGTTTGGGACATGGAATCG
78545896 GCTTGACATG
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
46 1 0.01
47 17 0.24
48 51 0.72
49 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (46 bp):
AGAGCCAGTGTAAGACATGTTTGGGACATGGAATCGTATTAAGACA
Found at i:78545996 original size:49 final size:49
Alignment explanation
Indices: 78545724--78546086 Score: 143
Period size: 48 Copynumber: 7.7 Consensus size: 49
78545714 GATGTGTGCT
* * * * *
78545724 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC-AT-TATGAGAGCC
1 AGTGTAAGACCTGTTTGGGACATGGCATCAGCCTCGATAGATGAGAGCC
* ** *
78545770 AGTGTAAGACCATGTTTGGGACATGGTATC-G--TC-ATTGAGACAAGATCC
1 AGTGTAAGACC-TGTTTGGGACATGGCATCAGCCTCGA-T-AGATGAGAGCC
* * * * * ** * * *
78545818 AGTGTAAGATCATGTCTCGGACATGGAATCGGTAT-TA-AGACGAGAGCT
1 AGTGTAAGA-CCTGTTTGGGACATGGCATCAGCCTCGATAGATGAGAGCC
* * * * * *
78545866 AGTGTAAGACATGTTTGGGACATGGCATC-GGCTTG--ACAT--GTGTC
1 AGTGTAAGACCTGTTTGGGACATGGCATCAGCCTCGATAGATGAGAGCC
* ** * **
78545910 AGAGTAAGACCTG-TCAGGACATGGCATTGATAC-CGATAGATGAGAGCC
1 AGTGTAAGACCTGTTTGGGACATGGCA-TCAGCCTCGATAGATGAGAGCC
* * * *
78545958 AGTGTAAGACCTATTTGGGACATGGCATCAGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTTTGGGACATGGCATCAGCCTCGATAGATGAGAGCC
* * * * * * *
78546007 AGTGTAGGACCTGTCTGGGACATGGTATC-GACTTAGAT-G-TGTGAGCT
1 AGTGTAAGACCTGTTTGGGACATGGCATCAG-CCTCGATAGATGAGAGCC
*
78546054 AGTGTAAGACCATGTTTGGAACATGGCATCAGC
1 AGTGTAAGACC-TGTTTGGGACATGGCATCAGC
78546087 ATCGTACCCT
Statistics
Matches: 233, Mismatches: 62, Indels: 42
0.69 0.18 0.12
Matches are distributed among these distances:
43 11 0.05
44 15 0.06
45 3 0.01
46 18 0.08
47 43 0.18
48 85 0.36
49 56 0.24
51 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCTGTTTGGGACATGGCATCAGCCTCGATAGATGAGAGCC
Found at i:78548755 original size:6 final size:6
Alignment explanation
Indices: 78548709--78548753 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
78548699 GAAATACACC
* *
78548709 GTAACG GTAACA GTAACA GTAACA GTAACA GTAACA GTAGCA GTA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTA
78548754 GCGGTACACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.18
Consensus pattern (6 bp):
GTAACA
Found at i:78549343 original size:20 final size:22
Alignment explanation
Indices: 78549293--78549349 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
78549283 TCCCCTGTTC
*
78549293 TTCTCTGTTTCATTTGCTTTGT
1 TTCTCTTTTTCATTTGCTTTGT
78549315 TTCTCTTTTTCATTT-CTTT-T
1 TTCTCTTTTTCATTTGCTTTGT
78549335 GTT-TCTTTTTCATTT
1 -TTCTCTTTTTCATTT
78549350 ATTATTTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 13 0.39
21 6 0.18
22 14 0.42
ACGTcount: A:0.05, C:0.18, G:0.07, T:0.70
Consensus pattern (22 bp):
TTCTCTTTTTCATTTGCTTTGT
Found at i:78549502 original size:14 final size:15
Alignment explanation
Indices: 78549478--78549523 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
78549468 ATAAATATCT
78549478 TATAATATAATTATAA
1 TATAAT-TAATTATAA
78549494 TA-AATTAATT-TAA
1 TATAATTAATTATAA
*
78549507 TATAATTTATTACTAA
1 TATAATTAATTA-TAA
78549523 T
1 T
78549524 TCATATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 5 0.19
14 12 0.46
15 3 0.12
16 6 0.23
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
TATAATTAATTATAA
Found at i:78551838 original size:12 final size:12
Alignment explanation
Indices: 78551821--78551847 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
78551811 CATTTTTGAG
78551821 TTAACATGAACA
1 TTAACATGAACA
78551833 TTAACATGAACA
1 TTAACATGAACA
78551845 TTA
1 TTA
78551848 TCACAATAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (12 bp):
TTAACATGAACA
Found at i:78554117 original size:12 final size:11
Alignment explanation
Indices: 78554099--78554128 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
78554089 TTCAAACCAC
78554099 AACCAATACTA
1 AACCAATACTA
78554110 ATACCAATACTA
1 A-ACCAATACTA
78554122 AACCAAT
1 AACCAAT
78554129 CCAAACACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.53, C:0.27, G:0.00, T:0.20
Consensus pattern (11 bp):
AACCAATACTA
Found at i:78554331 original size:111 final size:111
Alignment explanation
Indices: 78554086--78554312 Score: 445
Period size: 111 Copynumber: 2.0 Consensus size: 111
78554076 CATCCTTGCA
*
78554086 AATTTCAAACCACAACCAATACTAATACCAATACTAAACCAATCCAAACACATTTTATATATTAT
1 AATTTCAAACCACAACCAATACAAATACCAATACTAAACCAATCCAAACACATTTTATATATTAT
78554151 CCAATACTTGACTTAAAACACTTATCATGTATCATTCTCAATTATC
66 CCAATACTTGACTTAAAACACTTATCATGTATCATTCTCAATTATC
78554197 AATTTCAAACCACAACCAATACAAATACCAATACTAAACCAATCCAAACACATTTTATATATTAT
1 AATTTCAAACCACAACCAATACAAATACCAATACTAAACCAATCCAAACACATTTTATATATTAT
78554262 CCAATACTTGACTTAAAACACTTATCATGTATCATTCTCAATTATC
66 CCAATACTTGACTTAAAACACTTATCATGTATCATTCTCAATTATC
78554308 AATTT
1 AATTT
78554313 ACTTATTTCA
Statistics
Matches: 115, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 115 1.00
ACGTcount: A:0.43, C:0.24, G:0.02, T:0.32
Consensus pattern (111 bp):
AATTTCAAACCACAACCAATACAAATACCAATACTAAACCAATCCAAACACATTTTATATATTAT
CCAATACTTGACTTAAAACACTTATCATGTATCATTCTCAATTATC
Found at i:78554782 original size:18 final size:18
Alignment explanation
Indices: 78554761--78554801 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
78554751 ATAATCAGTA
78554761 ATTCAATAACAGTCAAAT
1 ATTCAATAACAGTCAAAT
* * *
78554779 ATTCAGTAGCAGTCAATT
1 ATTCAATAACAGTCAAAT
78554797 ATTCA
1 ATTCA
78554802 GTACCTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (18 bp):
ATTCAATAACAGTCAAAT
Found at i:78554802 original size:18 final size:18
Alignment explanation
Indices: 78554770--78554804 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
78554760 AATTCAATAA
78554770 CAGTCAAATATTCAGTAG
1 CAGTCAAATATTCAGTAG
*
78554788 CAGTCAATTATTCAGTA
1 CAGTCAAATATTCAGTA
78554805 CCTTTATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (18 bp):
CAGTCAAATATTCAGTAG
Found at i:78554927 original size:6 final size:6
Alignment explanation
Indices: 78554912--78554950 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
78554902 GGAATACATC
* *
78554912 GTAACG GTAACA GTAACA GTAACA GTAACA ATAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTA
78554951 GCAATAGCGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
GTAACA
Found at i:78554955 original size:12 final size:12
Alignment explanation
Indices: 78554919--78554956 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
78554909 ATCGTAACGG
*
78554919 TAACAGTAACAG
1 TAACAGTAACAA
78554931 TAACAGTAACAA
1 TAACAGTAACAA
*
78554943 TAACAGTAGCAA
1 TAACAGTAACAA
78554955 TA
1 TA
78554957 GCGATACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.53, C:0.16, G:0.13, T:0.18
Consensus pattern (12 bp):
TAACAGTAACAA
Found at i:78555533 original size:22 final size:20
Alignment explanation
Indices: 78555499--78555554 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 20
78555489 CCCCTGTTCT
*
78555499 TTTCTGTTTCATTTGC-TTTG
1 TTTCTTTTTCATTT-CTTTTG
78555519 TTTCTCTTTTTCATTTCTTTTG
1 -TT-TCTTTTTCATTTCTTTTG
78555541 TTTCTTTTTCATTT
1 TTTCTTTTTCATTT
78555555 ATTATTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
20 12 0.38
21 5 0.16
22 15 0.47
ACGTcount: A:0.05, C:0.16, G:0.07, T:0.71
Consensus pattern (20 bp):
TTTCTTTTTCATTTCTTTTG
Found at i:78555548 original size:20 final size:21
Alignment explanation
Indices: 78555498--78555554 Score: 73
Period size: 20 Copynumber: 2.7 Consensus size: 21
78555488 TCCCCTGTTC
*
78555498 TTTTCTGTTTCATTTGCTTTG
1 TTTTCTTTTTCATTTGCTTTG
78555519 TTTCTCTTTTTCATTT-CTTT-
1 TTT-TCTTTTTCATTTGCTTTG
78555539 TGTTTCTTTTTCATTT
1 T-TTTCTTTTTCATTT
78555555 ATTATTTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
20 13 0.39
21 9 0.27
22 11 0.33
ACGTcount: A:0.05, C:0.16, G:0.07, T:0.72
Consensus pattern (21 bp):
TTTTCTTTTTCATTTGCTTTG
Found at i:78557254 original size:27 final size:27
Alignment explanation
Indices: 78557224--78557294 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
78557214 GTAGGCTAGC
78557224 ATTACTAAAATACCCTTGTAAGGTAGA
1 ATTACTAAAATACCCTTGTAAGGTAGA
* * *
78557251 ATTACTAAAATGCCCCTGTAGGGTAGA
1 ATTACTAAAATACCCTTGTAAGGTAGA
*
78557278 ATTACCAAAATACCCTT
1 ATTACTAAAATACCCTT
78557295 AGTTTATAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (27 bp):
ATTACTAAAATACCCTTGTAAGGTAGA
Found at i:78557408 original size:27 final size:26
Alignment explanation
Indices: 78557277--78557488 Score: 185
Period size: 27 Copynumber: 7.8 Consensus size: 26
78557267 TGTAGGGTAG
* *
78557277 AATTACCAAAATACCCTTAGTTTATAA
1 AATTACCAAAATACCCTGA-TTTGTAA
* * * *
78557304 AATTACCAAAATACCTTTGGTCTATAA
1 AATTACCAAAATACC-CTGATTTGTAA
*
78557331 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATA-CCCTGATTTGTAA
78557358 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATA-CCCTGA-TTTGTAA
*
78557385 AATTACCAAAATACCTCTGATTTGTGA
1 AATTACCAAAATACC-CTGATTTGTAA
** ** *
78557412 AATTACTGAAATACCCTCGACCTATAA
1 AATTACCAAAATACCCT-GATTTGTAA
* *
78557439 AATTACTAAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCT-GATTTGTAA
78557466 AATTACCAAAGA-ACCCTCGATTT
1 AATTACCAAA-ATACCCT-GATTT
78557489 ACAGAATTAT
Statistics
Matches: 158, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
26 4 0.03
27 149 0.94
28 5 0.03
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (26 bp):
AATTACCAAAATACCCTGATTTGTAA
Found at i:78557409 original size:54 final size:53
Alignment explanation
Indices: 78557277--78557475 Score: 211
Period size: 54 Copynumber: 3.7 Consensus size: 53
78557267 TGTAGGGTAG
* * ** *
78557277 AATTACCAAAATACCCTTAGTTTATAAAATTACCAAAATACCTTTGGTCTATAA
1 AATTACCAAAATACCCTGA-TTTGTAAAATTACCAAAATACCCCTAGTCTATAA
* * *
78557331 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATA-CCCTGATTTGTAAAATTACCAAAATACCCCTAGTCTATAA
* ** * *
78557385 AATTACCAAAATACCTCTGATTTGTGAAATTACTGAAATA-CCCTCGACCTATAA
1 AATTACCAAAATACC-CTGATTTGTAAAATTACCAAAATACCCCTAG-TCTATAA
* *
78557439 AATTACTAAAATACCCTCGACTTGTAAAATTACCAAA
1 AATTACCAAAATACCCT-GATTTGTAAAATTACCAAA
78557476 GAACCCTCGA
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
53 9 0.08
54 107 0.89
55 4 0.03
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (53 bp):
AATTACCAAAATACCCTGATTTGTAAAATTACCAAAATACCCCTAGTCTATAA
Found at i:78557415 original size:81 final size:81
Alignment explanation
Indices: 78557277--78557475 Score: 222
Period size: 81 Copynumber: 2.5 Consensus size: 81
78557267 TGTAGGGTAG
* * * *
78557277 AATTACCAAAATACCCTTAGTTTATAAAATTACCAAAATACCTTTGGTCTATAAAATTACCAAAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCTCTGATCTATAAAATTACCAAAA
*** *
78557342 TACCC-CTGGTTTGTAA
66 TACCCTC-GACCTATAA
* * * **
78557358 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCTCTGATTTGTGAAATTACTGAAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCTCTGATCTATAAAATTACCAAAA
78557423 TACCCTCGACCTATAA
66 TACCCTCGACCTATAA
* * *
78557439 AATTACTAAAATA-CCCTCGACTTGTAAAATTACCAAA
1 AATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAA
78557476 GAACCCTCGA
Statistics
Matches: 100, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
80 5 0.05
81 94 0.94
82 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCTCTGATCTATAAAATTACCAAAA
TACCCTCGACCTATAA
Found at i:78557508 original size:54 final size:54
Alignment explanation
Indices: 78557450--78557566 Score: 126
Period size: 54 Copynumber: 2.2 Consensus size: 54
78557440 ATTACTAAAA
* *
78557450 TACCCTCGACTTGTAAAATTACCAAAGAACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGACTTATAAAATTACCAAAGAACCCTCGATTTACAAAATTATCGTTT
* * * ****** *
78557504 TACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTATAAAATTATCGTTT
1 TACCCTCGACTTATAAAATTACCAAAGAACCCTCGATTTACAAAATTATCGTTT
78557558 TACCCTCGA
1 TACCCTCGA
78557567 TTTACAGAAT
Statistics
Matches: 50, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.38
Consensus pattern (54 bp):
TACCCTCGACTTATAAAATTACCAAAGAACCCTCGATTTACAAAATTATCGTTT
Found at i:78557508 original size:81 final size:81
Alignment explanation
Indices: 78557423--78557590 Score: 183
Period size: 81 Copynumber: 2.1 Consensus size: 81
78557413 ATTACTGAAA
*
78557423 TACCCTCGACCTATAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGAACCCTCGATT
1 TACCCTCGACCTATAAAATTACTAAAATACCCTCGACTTATAAAATTACCAAAGAACCCTCGATT
78557488 TACAGAATTATCGTTT
66 TACAGAATTATCGTTT
* ** * **** * * *****
78557504 TACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTATAAAATTATCGTTTTACCCTCGATT
1 TACCCTCGACCTATAAAATTACTAAAATACCCTCGACTTATAAAATTACCAAAGAACCCTCGATT
*
78557569 TACAGAATTATTGTTT
66 TACAGAATTATCGTTT
78557585 TACCCT
1 TACCCT
78557591 TAATTTAAAA
Statistics
Matches: 70, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.38
Consensus pattern (81 bp):
TACCCTCGACCTATAAAATTACTAAAATACCCTCGACTTATAAAATTACCAAAGAACCCTCGATT
TACAGAATTATCGTTT
Found at i:78557591 original size:81 final size:81
Alignment explanation
Indices: 78557478--78557885 Score: 498
Period size: 81 Copynumber: 5.0 Consensus size: 81
78557468 TTACCAAAGA
* * *
78557478 ACCCTCGATTTACAGAATTA-TCGTTTTACCCTTGATTTATAGAATTACTGTTTTACCCTCGATT
1 ACCCTCGATTTACAGAATTACT-GTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
78557542 TATAAAATTATCGTTTT
65 TATAAAATTATCGTTTT
* ** * *
78557559 ACCCTCGATTTACAGAATTATTGTTTTACCCTTAATTTAAAAAATTACTATTTTACCCTCGATTT
1 ACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTT
* *
78557624 ACAAAATTATCGGTTT
66 ATAAAATTATCGTTTT
* *
78557640 ACCCTCGATTTACAGAATTACTATTTTAACCTCGATTTACAGAATTACTATTTTACCCTCGATTT
1 ACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTT
* * *
78557705 ACAGAATTA-CTATTTT
66 ATAAAATTATC-GTTTT
* * * * * *
78557721 ACCCTCAATTTGCAGAATTACCGTTTTACCCTCGA-TTACAAAATTACTATTTTATCCTTGATTT
1 ACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTT
* *
78557785 ATAGAATTACCGTTTT
66 ATAAAATTATCGTTTT
* * * ** **
78557801 ACCCTCGATTTATAGAATTACTATTTTACCCTCAATTTACAGAATTACCGTTTTACCCTTAATTT
1 ACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTT
*
78557866 ATAAAATTATCATTTT
66 ATAAAATTATCGTTTT
78557882 ACCC
1 ACCC
78557886 CAATGGTGTT
Statistics
Matches: 283, Mismatches: 40, Indels: 8
0.85 0.12 0.02
Matches are distributed among these distances:
80 68 0.24
81 214 0.76
82 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (81 bp):
ACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTT
ATAAAATTATCGTTTT
Found at i:78557874 original size:27 final size:27
Alignment explanation
Indices: 78557478--78557859 Score: 448
Period size: 27 Copynumber: 14.2 Consensus size: 27
78557468 TTACCAAAGA
78557478 ACCCTCGATTTACAGAATTA-TCGTTTT
1 ACCCTCGATTTACAGAATTACT-GTTTT
* *
78557505 ACCCTTGATTTATAGAATTACTGTTTT
1 ACCCTCGATTTACAGAATTACTGTTTT
* *
78557532 ACCCTCGATTTATAAAATTA-TCGTTTT
1 ACCCTCGATTTACAGAATTACT-GTTTT
*
78557559 ACCCTCGATTTACAGAATTATTGTTTT
1 ACCCTCGATTTACAGAATTACTGTTTT
** * * *
78557586 ACCCTTAATTTAAAAAATTACTATTTT
1 ACCCTCGATTTACAGAATTACTGTTTT
* *
78557613 ACCCTCGATTTACAAAATTA-TCGGTTT
1 ACCCTCGATTTACAGAATTACT-GTTTT
*
78557640 ACCCTCGATTTACAGAATTACTATTTT
1 ACCCTCGATTTACAGAATTACTGTTTT
* *
78557667 AACCTCGATTTACAGAATTACTATTTT
1 ACCCTCGATTTACAGAATTACTGTTTT
*
78557694 ACCCTCGATTTACAGAATTACTATTTT
1 ACCCTCGATTTACAGAATTACTGTTTT
* * *
78557721 ACCCTCAATTTGCAGAATTACCGTTTT
1 ACCCTCGATTTACAGAATTACTGTTTT
* *
78557748 ACCCTCGA-TTACAAAATTACTATTTT
1 ACCCTCGATTTACAGAATTACTGTTTT
* * * *
78557774 ATCCTTGATTTATAGAATTACCGTTTT
1 ACCCTCGATTTACAGAATTACTGTTTT
* *
78557801 ACCCTCGATTTATAGAATTACTATTTT
1 ACCCTCGATTTACAGAATTACTGTTTT
* *
78557828 ACCCTCAATTTACAGAATTACCGTTTT
1 ACCCTCGATTTACAGAATTACTGTTTT
78557855 ACCCT
1 ACCCT
78557860 TAATTTATAA
Statistics
Matches: 304, Mismatches: 45, Indels: 12
0.84 0.12 0.03
Matches are distributed among these distances:
26 22 0.07
27 279 0.92
28 3 0.01
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
ACCCTCGATTTACAGAATTACTGTTTT
Found at i:78558424 original size:31 final size:31
Alignment explanation
Indices: 78558389--78558459 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 31
78558379 TTGCATTCAC
* * *
78558389 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTAATTCTGTCACCTAATACTG
*
78558420 ATTCTGATTTTAATTCTGTCACCTAATTCTG
1 ATTCTGATTTTAATTCTGTCACCTAATACTG
78558451 ATTCTGATT
1 ATTCTGATT
78558460 CTCATTTTGA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTAATTCTGTCACCTAATACTG
Found at i:78558428 original size:6 final size:6
Alignment explanation
Indices: 78558389--78558483 Score: 50
Period size: 6 Copynumber: 15.5 Consensus size: 6
78558379 TTGCATTCAC
* * * *
78558389 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * *
78558438 -TCACCTA ATTCTG ATTCTG ATTCTC ATTTTG ATTCTC ATTTTG ATT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT
78558484 TAGTTCTGAT
Statistics
Matches: 64, Mismatches: 19, Indels: 12
0.67 0.20 0.13
Matches are distributed among these distances:
5 3 0.05
6 54 0.84
7 5 0.08
8 2 0.03
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:78558470 original size:12 final size:12
Alignment explanation
Indices: 78558445--78558483 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
78558435 CTGTCACCTA
* *
78558445 ATTCTGATTCTG
1 ATTCTCATTTTG
78558457 ATTCTCATTTTG
1 ATTCTCATTTTG
78558469 ATTCTCATTTTG
1 ATTCTCATTTTG
78558481 ATT
1 ATT
78558484 TAGTTCTGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.18, C:0.15, G:0.10, T:0.56
Consensus pattern (12 bp):
ATTCTCATTTTG
Found at i:78560378 original size:27 final size:26
Alignment explanation
Indices: 78560348--78560430 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
78560338 ATCTCATATC
* *
78560348 TGTAGGCTAGCATTACTGAAATACCCT
1 TGTAGG-TAGAATTACTAAAATACCCT
* *
78560375 TGTAAGGTAGAATTACTAAAATGCCCC
1 TGT-AGGTAGAATTACTAAAATACCCT
*
78560402 TGTAGGGTAGAATTACCAAAATACCCT
1 TGTA-GGTAGAATTACTAAAATACCCT
78560429 TG
1 TG
78560431 GTTTATAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
26 1 0.02
27 43 0.91
28 3 0.06
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (26 bp):
TGTAGGTAGAATTACTAAAATACCCT
Found at i:78560543 original size:27 final size:27
Alignment explanation
Indices: 78560412--78560615 Score: 214
Period size: 27 Copynumber: 7.6 Consensus size: 27
78560402 TGTAGGGTAG
* *
78560412 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCCTGGTTTGTAA
*
78560439 AATTACCAAAATACCCCTGGTTTATAA
1 AATTACCAAAATACCCCTGGTTTGTAA
78560466 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
*
78560493 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* ** *
78560520 AATTACCAAAATACCTCTAATTTGTGA
1 AATTACCAAAATACCCCTGGTTTGTAA
** * * *
78560547 AATTACTGAAATA-CTCTCGATCTGTAA
1 AATTACCAAAATACCCCT-GGTTTGTAA
** * **
78560574 AATTACTGAAATACCTC-GACTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
*
78560600 AATTACCAAAGTACCC
1 AATTACCAAAATACCC
78560616 TCGATTTAAA
Statistics
Matches: 158, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
26 23 0.15
27 132 0.84
28 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGGTTTGTAA
Found at i:78560645 original size:27 final size:26
Alignment explanation
Indices: 78560611--78561020 Score: 435
Period size: 27 Copynumber: 15.2 Consensus size: 26
78560601 ATTACCAAAG
*
78560611 TACCCTCGATTTA-AAAAGTTATCGTTT
1 TACCCTCGATTTACAGAA-TTA-CGTTT
* *
78560638 TACTCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTAC-GTTT
* * * *
78560665 TACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTA-CGTTT
78560692 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTAC-GTTT
* *
78560719 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
*
78560746 TACCCTCGATTTACAGAATTATCATTT
1 TACCCTCGATTTACAGAATTA-CGTTT
*
78560773 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-GTTT
*
78560800 TACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
* * *
78560827 TACCCTCAATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-GTTT
*
78560854 TATCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTA-CGTTT
* *
78560881 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-GTTT
*
78560908 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTA-CGTTT
* *
78560935 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-GTTT
*
78560962 TACCCTCGATTTACAGAATTACCGTTA
1 TACCCTCGATTTACAGAATTA-CGTTT
* * * *
78560989 TACCCTTGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTA-CGTTT
78561016 TACCC
1 TACCC
78561021 CTATGGTGTT
Statistics
Matches: 331, Mismatches: 39, Indels: 26
0.84 0.10 0.07
Matches are distributed among these distances:
26 5 0.02
27 318 0.96
28 8 0.02
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (26 bp):
TACCCTCGATTTACAGAATTACGTTT
Found at i:78560658 original size:54 final size:54
Alignment explanation
Indices: 78560611--78561020 Score: 563
Period size: 54 Copynumber: 7.6 Consensus size: 54
78560601 ATTACCAAAG
* * * *
78560611 TACCCTCGATTTA-AAAAGTTA-TCGTTTTACTCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAA-TTACT-ATTTTACCCTCGATTTACAGAATTACCGTTT
* * * *
78560665 TACCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* ** * *
78560719 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTATCATTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* **
78560773 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* *
78560827 TACCCTCAATTTACAAAATTACTATTTTATCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
*
78560881 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * *
78560935 TACCCTCAATTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTA
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * *
78560989 TACCCTTGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAAAATTACTATTTTACCC
78561021 CTATGGTGTT
Statistics
Matches: 321, Mismatches: 33, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
54 317 0.99
55 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:78560698 original size:81 final size:81
Alignment explanation
Indices: 78560611--78561020 Score: 563
Period size: 81 Copynumber: 5.1 Consensus size: 81
78560601 ATTACCAAAG
* * * *
78560611 TACCCTCGATTTA-AAAAGTTA-TCGTTTTACTCTCGATTTATAGAATTACTGTTTTACCCTCAA
1 TACCCTCGATTTACAGAA-TTACT-GTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGA
*
78560674 TTTATAAAATTACCATTT
64 TTTACAAAATTACCATTT
* * *
78560692 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
* *
78560757 TACAGAATTATCATTT
66 TACAAAATTACCATTT
* * *
78560773 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAGAATTATTGTTTTACCCTCAATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
*
78560838 TACAAAATTACTATTT
66 TACAAAATTACCATTT
* * * *
78560854 TATCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
*
78560919 TACAGAATTACCATTT
66 TACAAAATTACCATTT
* * * * *
78560935 TACCCTCAATTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTATACCCTTGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
*
78561000 TATAAAATTACCATTT
66 TACAAAATTACCATTT
78561016 TACCC
1 TACCC
78561021 CTATGGTGTT
Statistics
Matches: 290, Mismatches: 37, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
81 286 0.99
82 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
TACAAAATTACCATTT
Found at i:78561375 original size:26 final size:27
Alignment explanation
Indices: 78561346--78561405 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
78561336 CCATATATAT
*
78561346 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * * *
78561372 ATATTTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
78561399 ATATCTG
1 ATATCTG
78561406 GCAGCCTCGT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:78561562 original size:6 final size:6
Alignment explanation
Indices: 78561553--78561654 Score: 66
Period size: 6 Copynumber: 16.7 Consensus size: 6
78561543 TACCTGATAT
* * * * *
78561553 TGATTC TGATTC TAATTC TG-TCACC TAATTC TAATTC TGATTT TGATTC
1 TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC
* * *
78561602 TGATTC TG-TCATC TGATTT TGATTC TGATTC TCATTT TGATTC T-AGTTC
1 TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC TGATTC TGA-TTC
78561651 TGAT
1 TGAT
78561655 AATGTTTCTT
Statistics
Matches: 74, Mismatches: 14, Indels: 16
0.71 0.13 0.15
Matches are distributed among these distances:
5 3 0.04
6 62 0.84
7 7 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.51
Consensus pattern (6 bp):
TGATTC
Found at i:78561603 original size:31 final size:31
Alignment explanation
Indices: 78561524--78561603 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 31
78561514 TTGCATTCAC
* * * *
78561524 ATTCTGATTTTGATTCTCTTACCTGATATTG
1 ATTCTGATTTTGATTCTGTCACCTAATATTA
* *
78561555 ATTCTGATTCTAATTCTGTCACCTAAT-TCTA
1 ATTCTGATTTTGATTCTGTCACCTAATAT-TA
78561586 ATTCTGATTTTGATTCTG
1 ATTCTGATTTTGATTCTG
78561604 ATTCTGTCAT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
30 1 0.03
31 39 0.98
ACGTcount: A:0.21, C:0.17, G:0.11, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTAATATTA
Found at i:78561643 original size:37 final size:37
Alignment explanation
Indices: 78561553--78561645 Score: 114
Period size: 37 Copynumber: 2.5 Consensus size: 37
78561543 TACCTGATAT
*
78561553 TGATTCTGATTCTAATTCTGTCACCTAATTCTAATTC
1 TGATTCTGATTCTGATTCTGTCACCTAATTCTAATTC
* * * * *
78561590 TGATTTTGATTCTGATTCTGTCATCTGATTTTGATTC
1 TGATTCTGATTCTGATTCTGTCACCTAATTCTAATTC
* *
78561627 TGATTCTCATTTTGATTCT
1 TGATTCTGATTCTGATTCT
78561646 AGTTCTGATA
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.52
Consensus pattern (37 bp):
TGATTCTGATTCTGATTCTGTCACCTAATTCTAATTC
Found at i:78562322 original size:19 final size:19
Alignment explanation
Indices: 78562298--78562335 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
78562288 ACAAAACATA
78562298 GGCGTGTCAAAGGCACACG
1 GGCGTGTCAAAGGCACACG
*
78562317 GGCGTGTCGAAGGCACACG
1 GGCGTGTCAAAGGCACACG
78562336 AACGTGTCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.26, G:0.39, T:0.11
Consensus pattern (19 bp):
GGCGTGTCAAAGGCACACG
Found at i:78562341 original size:19 final size:19
Alignment explanation
Indices: 78562300--78562343 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
78562290 AAAACATAGG
**
78562300 CGTGTCAAAGGCACACGGG
1 CGTGTCAAAGGCACACGAA
*
78562319 CGTGTCGAAGGCACACGAA
1 CGTGTCAAAGGCACACGAA
78562338 CGTGTC
1 CGTGTC
78562344 CCTGTCTCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.34, T:0.14
Consensus pattern (19 bp):
CGTGTCAAAGGCACACGAA
Found at i:78565268 original size:27 final size:27
Alignment explanation
Indices: 78565238--78565415 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
78565228 ATATTGAGTC
* * * *
78565238 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
78565265 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
78565292 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
78565320 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
78565347 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
78565374 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
78565401 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78565416 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:78565377 original size:82 final size:81
Alignment explanation
Indices: 78565259--78565414 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
78565249 TGCTATATAA
* *
78565259 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
78565324 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
78565341 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
78565405 CACTTAGTGC
65 CACTTAGTGC
78565415 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:78573075 original size:27 final size:27
Alignment explanation
Indices: 78573045--78573222 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
78573035 ATATTGAGTC
* * * *
78573045 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
78573072 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
78573099 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
78573127 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
78573154 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
78573181 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
78573208 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78573223 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:78573184 original size:82 final size:81
Alignment explanation
Indices: 78573066--78573221 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
78573056 TGCTATATAA
* *
78573066 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
78573131 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
78573148 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
78573212 CACTTAGTGC
65 CACTTAGTGC
78573222 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:78589432 original size:55 final size:55
Alignment explanation
Indices: 78589316--78589446 Score: 138
Period size: 55 Copynumber: 2.4 Consensus size: 55
78589306 TGGCCGTGGG
* ** * **
78589316 CAAACCTGCCAAAACAATACGGGCGTGCGACACGCCCGTGCCTTGAAACCTTGGC
1 CAAACCTGTCAAATTAACACGGGCGTGCGACACGCCCGTGCCAAGAAACCTTGGC
* * *
78589371 CAAACCTGTCAAATTAACACGGGTGTGCGACACGCCCGTGCCAAGCAA-CTATGGT
1 CAAACCTGTCAAATTAACACGGGCGTGCGACACGCCCGTGCCAAGAAACCT-TGGC
* * *
78589426 CGAACCTGTTAGATTAACACG
1 CAAACCTGTCAAATTAACACG
78589447 AGCATGGGAC
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
54 2 0.03
55 61 0.97
ACGTcount: A:0.29, C:0.31, G:0.23, T:0.18
Consensus pattern (55 bp):
CAAACCTGTCAAATTAACACGGGCGTGCGACACGCCCGTGCCAAGAAACCTTGGC
Found at i:78591305 original size:6 final size:6
Alignment explanation
Indices: 78591291--78591343 Score: 72
Period size: 6 Copynumber: 9.0 Consensus size: 6
78591281 GATGTTTAAA
* * *
78591291 TTTA-T TTTATC TTTATT TTTATT TTTATT TTTATT TTTATT TATGTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
78591338 TTTATT
1 TTTATT
78591344 AATTTCACCT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
5 4 0.10
6 37 0.90
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:78593432 original size:13 final size:13
Alignment explanation
Indices: 78593414--78593439 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
78593404 AAGCAATCGT
78593414 ACACGGGCGTGTC
1 ACACGGGCGTGTC
78593427 ACACGGGCGTGTC
1 ACACGGGCGTGTC
78593440 CCCGTCAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:78594644 original size:11 final size:11
Alignment explanation
Indices: 78594628--78594672 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
78594618 TAGTAAATAT
78594628 TATTTTATTAA
1 TATTTTATTAA
*
78594639 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
78594652 TATTTTATTAT
1 TATTTTATTAA
78594663 TATTTTATTA
1 TATTTTATTA
78594673 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:78597688 original size:12 final size:12
Alignment explanation
Indices: 78597668--78597697 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
78597658 TAGCCCTATA
*
78597668 CAGTATCAGTAG
1 CAGTGTCAGTAG
78597680 CAGTGTCAGTAG
1 CAGTGTCAGTAG
78597692 CAGTGT
1 CAGTGT
78597698 GGGCCTTAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (12 bp):
CAGTGTCAGTAG
Found at i:78605128 original size:48 final size:47
Alignment explanation
Indices: 78604975--78605340 Score: 218
Period size: 48 Copynumber: 7.7 Consensus size: 47
78604965 ATGGATGTGT
* * *
78604975 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC-ATTATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGAATATGA-A
* * * * * * *
78605021 GCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCAT-TAAGACGAGA
1 GCTAGTGTAAGACC-TGTCTGGGACATGGCATCGGCCTCGAATATGA-A
* *
78605069 GCTAGTATAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATATGTAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGA-ATATG-AA
* * * * *
78605117 GCTAGTGTAAGACCTGTCTAGGACATGGCATCAG-CTTG-ACATG-T
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGAATATGAA
* * *
78605161 G-TCAGTGTTAGACCTGTCTAGGACATGGCATCGACAC-CG-ATAGCTGAAA
1 GCT-AGTGTAAGACCTGTCTGGGACATGGCATCGGC-CTCGAATA--TG-AA
* * * * *
78605210 GCCAGTGTAAGACCTGTTTGGGACATAGCATTGGGCTCGATATATGAAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGA-ATATG-AA
* * * *
78605259 G-TCAGTGTAAGACCTGTCTGGGACAT-GCATCGACTTAGATGTATG-A
1 GCT-AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGA-ATATGAA
* * *
78605305 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 GCTAGTGTAAGACC-TGTCTGGGACATGGCATCGGC
78605341 ATCGTACCCT
Statistics
Matches: 247, Mismatches: 51, Indels: 42
0.73 0.15 0.12
Matches are distributed among these distances:
43 1 0.00
44 29 0.12
45 3 0.01
46 38 0.15
47 35 0.14
48 75 0.30
49 63 0.26
51 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGAATATGAA
Found at i:78605235 original size:49 final size:47
Alignment explanation
Indices: 78604978--78605338 Score: 176
Period size: 49 Copynumber: 7.6 Consensus size: 47
78604968 GATGTGTGCT
* * * *
78604978 AGTGTAAGACATGTCTGGGACAT-GCATCGGC-CACATTA-TGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTC-GA-TAGTGAAAGCC
* * * * *
78605024 AGTGTAAGACCATGTTTGGGACATGGCATC-A-GC-ATTAAGACGAGAGCT
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGACTCGA-T-AG-TGAAAGCC
* * * * *
78605072 AGTATAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATA-TGTAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATC-GACTC--GATAGTGAAAGCC
* * * * *
78605120 AGTGTAAGACCTGTCTAGGACATGGCATC-AGCTTGACA-TG--TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CTCGATAGTGAAAGCC
* * *
78605164 AGTGTTAGACCTGTCTAGGACATGGCATCGACACCGATAGCTGAAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-TCGATAG-TGAAAGCC
* * * * * *
78605213 AGTGTAAGACCTGTTTGGGACATAGCATTGGGCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCA-TCGACTCGATA-GTGAAAGCC
* *
78605262 AGTGTAAGACCTGTCTGGGACAT-GCATCGACTTAGAT-GT-ATGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-TCGATAGTGA-AAGCC
* *
78605308 AGTGTAAGACCATGTTTGGAACATGGCATCG
1 AGTGTAAGACC-TGTCTGGGACATGGCATCG
78605339 GCATCGTACC
Statistics
Matches: 243, Mismatches: 46, Indels: 50
0.72 0.14 0.15
Matches are distributed among these distances:
44 30 0.12
45 8 0.03
46 36 0.15
47 38 0.16
48 60 0.25
49 65 0.27
50 4 0.02
51 1 0.00
52 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACTCGATAGTGAAAGCC
Found at i:78607279 original size:56 final size:56
Alignment explanation
Indices: 78607193--78607312 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
78607183 ACAAGGGATG
78607193 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
78607249 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
78607305 ATGGGCAA
1 ATGGGCAA
78607313 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:78608813 original size:47 final size:47
Alignment explanation
Indices: 78608759--78609357 Score: 805
Period size: 47 Copynumber: 12.6 Consensus size: 47
78608749 TATTTGAATA
*
78608759 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
78608806 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
78608855 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
78608904 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
78608951 AATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
78608998 AATGTGAAAGTGTATATATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG----TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
78609049 AATGTGAACA-TCTGTATGTGTGATAAGTCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
** *
78609096 AATGTGAACA-TACATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
78609143 AATGTGAACA-TG-AGTATGTGTGATAAGGCCGAATGGCCAATGTGATT
1 AATGTGAA-AGTGTA-TATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
78609190 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
78609237 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
78609284 AATGTGGAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
78609331 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
78609358 TCCCGAAGGG
Statistics
Matches: 510, Mismatches: 32, Indels: 20
0.91 0.06 0.04
Matches are distributed among these distances:
46 2 0.00
47 370 0.73
49 95 0.19
51 42 0.08
52 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:78609235 original size:22 final size:22
Alignment explanation
Indices: 78609208--78609329 Score: 68
Period size: 22 Copynumber: 5.3 Consensus size: 22
78609198 CATGTGTATG
78609208 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
78609230 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
78609255 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* ** ***
78609277 TGTGATGAATGTGGAAGTGTATATA
1 TGTGAT-AAGGCCGAA-TGGCCA-A
78609302 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
78609324 TGTGAT
1 TGTGAT
78609330 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 20, Indels: 20
0.64 0.18 0.18
Matches are distributed among these distances:
22 20 0.29
23 18 0.26
24 18 0.26
25 14 0.20
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:78609304 original size:25 final size:24
Alignment explanation
Indices: 78609275--78609354 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 24
78609265 CCGAATGGCC
78609275 AATGTGATGAATGTGGAAGTGTAT
1 AATGTGATGAATGTGGAAGTGTAT
* ** ***
78609299 ATATGTGAT-AAGGCCGAA-TGGCC
1 A-ATGTGATGAATGTGGAAGTGTAT
*
78609322 AATGTGATGGATGTGGAAGTGTAT
1 AATGTGATGAATGTGGAAGTGTAT
78609346 AAATGTGAT
1 -AATGTGAT
78609355 AAGTCCCGAA
Statistics
Matches: 39, Mismatches: 13, Indels: 7
0.66 0.22 0.12
Matches are distributed among these distances:
22 7 0.18
23 8 0.21
24 9 0.23
25 15 0.38
ACGTcount: A:0.33, C:0.05, G:0.33, T:0.30
Consensus pattern (24 bp):
AATGTGATGAATGTGGAAGTGTAT
Found at i:78609353 original size:141 final size:141
Alignment explanation
Indices: 78608759--78609357 Score: 798
Period size: 145 Copynumber: 4.2 Consensus size: 141
78608749 TATTTGAATA
* *
78608759 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATA-ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--CATA
* * *
78608824 TATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
63 TATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCGA
*
78608889 ATGGCCGATGTGATG
127 ATGGCCAATGTGATG
* * *
78608904 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATA-ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATA
* * *
78608969 TGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATATGAGATAAGGCCGA
65 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG---ATATATATGTGATAAGGCCGA
78609034 ATGGCCAATGTGATG
127 ATGGCCAATGTGATG
* * * *
78609049 AATGTGAACATCTGTAT-GTGTGATAAGTCCGAATGGCCAATGTGATGAATGTGAACA-TACATA
1 AATGTGAA-A-GTGTATAATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGCATA
* *
78609112 TATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGA-GTATGTGTGATAAGGCCGA
63 TATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGATATATATGTGATAAGGCCGA
*
78609175 ATGGCCAATGTGATT
127 ATGGCCAATGTGATG
*
78609190 AATGTGAACATGTGTAT-GTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCATA
1 AATGTGAA-A-GTGTATAATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGCATA
*
78609253 TATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGGAAGTG-TATATATGTGATAAGGCCGAA
63 TATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGAA
78609317 TGGCCAATGTGATG
128 TGGCCAATGTGATG
* *
78609331 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTAT-AATGTGATAAG
78609358 TCCCGAAGGG
Statistics
Matches: 415, Mismatches: 29, Indels: 24
0.89 0.06 0.05
Matches are distributed among these distances:
139 6 0.01
140 2 0.00
141 176 0.42
142 1 0.00
143 45 0.11
145 177 0.43
146 3 0.01
147 5 0.01
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (141 bp):
AATGTGAAAGTGTATAATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATAT
GAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGG
CCAATGTGATG
Found at i:78611617 original size:30 final size:28
Alignment explanation
Indices: 78611567--78611629 Score: 72
Period size: 30 Copynumber: 2.2 Consensus size: 28
78611557 AATAAAAATC
* *
78611567 ATTTTACAAGTCTAGAGGCAAAAGTGTA
1 ATTTTACAAGTCTAGAGGCAAAAATATA
* *
78611595 ATTTTGACAAAGTTTAGGGGCAAAAATATA
1 ATTTT-AC-AAGTCTAGAGGCAAAAATATA
78611625 ATTTT
1 ATTTT
78611630 TCCAAAATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 5 0.17
29 2 0.07
30 22 0.76
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.33
Consensus pattern (28 bp):
ATTTTACAAGTCTAGAGGCAAAAATATA
Found at i:78626723 original size:42 final size:42
Alignment explanation
Indices: 78626660--78626775 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 42
78626650 TTACTAAGAT
*
78626660 TACATGTAAGACCATATCTGGGATATGGCATCGACATGAGAC
1 TACATGTAAGACCATATCTGGGATATGGCATCGACAAGAGAC
* * * * * * *
78626702 TTCGTGTAAGACCATAGCTGGGCTATTGACATTGATAAGAGAC
1 TACATGTAAGACCATATCTGGGATA-TGGCATCGACAAGAGAC
* *
78626745 TACATGTAATACCATATCTAGGATATGGCAT
1 TACATGTAAGACCATATCTGGGATATGGCAT
78626776 TGGTACGATA
Statistics
Matches: 58, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
42 26 0.45
43 32 0.55
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (42 bp):
TACATGTAAGACCATATCTGGGATATGGCATCGACAAGAGAC
Found at i:78630355 original size:20 final size:21
Alignment explanation
Indices: 78630330--78630368 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
78630320 CTCTTGAAAC
*
78630330 AGGGC-ACACGCCCGTGTGAA
1 AGGGCAACACGCCCATGTGAA
78630350 AGGGCAACACGCCCATGTG
1 AGGGCAACACGCCCATGTG
78630369 GTCAATATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.26, C:0.31, G:0.33, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGAA
Found at i:78631651 original size:46 final size:47
Alignment explanation
Indices: 78631518--78631777 Score: 218
Period size: 46 Copynumber: 5.6 Consensus size: 47
78631508 AGGGTATAAT
* *
78631518 GCCGATGCCATGTCCCAGACATGATCTTACACTGGCTTA-TTCATCAA
1 GCCGATGCCATGTCCCAGACATG-TCTTACACTGGCTTACATCATCTA
** * * * * * *
78631565 GTTGATGCCATATCCTAGACATGGTCTTACATTGAC--ACATCTTGTA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTTACATCATCTA
*
78631611 GCTGATG-CATGTCCCAGACATGTCTTACACTGGCTTACATC-TCTA
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCATCTA
* *
78631656 GGCCGATG-CATGTCCCAGACATGTCTTACACTAGCTCT-CGTCA-CAATA
1 -GCCGATGCCATGTCCCAGACATGTCTTACACTGGCT-TACATCATC--TA
* * *
78631704 -CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGTG
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCT-TACATCATCTA
*
78631751 GCCAATG-CATGTCCCAGACATGTCTTA
1 GCCGATGCCATGTCCCAGACATGTCTTA
78631778 TACTAGAACA
Statistics
Matches: 175, Mismatches: 25, Indels: 27
0.77 0.11 0.12
Matches are distributed among these distances:
44 11 0.06
45 16 0.09
46 64 0.37
47 58 0.33
48 26 0.15
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCATCTA
Found at i:78631759 original size:94 final size:92
Alignment explanation
Indices: 78631614--78631783 Score: 254
Period size: 94 Copynumber: 1.8 Consensus size: 92
78631604 TCTTGTAGCT
* *
78631614 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCTAGGCCGATGCATGTCCCAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCTAGGCCAATGCATGTCCCAGACATG
78631679 TCTTACACTAGCTCTCGTCACAATACC
66 TCTTACACTAGCTCTCGTCACAATACC
*
78631706 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGT-GGCCAATGCATGTCCCAGA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCTAGGCCAATGCATGTCCCAGA
*
78631769 CATGTCTTATACTAG
62 CATGTCTTACACTAG
78631784 AACACAAATA
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
92 4 0.06
93 14 0.20
94 49 0.70
95 3 0.04
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCTAGGCCAATGCATGTCCCAGACATG
TCTTACACTAGCTCTCGTCACAATACC
Found at i:78634778 original size:27 final size:25
Alignment explanation
Indices: 78634704--78634846 Score: 88
Period size: 27 Copynumber: 5.4 Consensus size: 25
78634694 TCAAATGGTA
* *
78634704 GTAATTTTACAATCGACGATATTTCG
1 GTAATTTTACAATCGAAGGTATTT-G
* * **
78634730 GTAATTTTATAAACCGGGGGTACTTTG
1 GTAATTTTA-CAATCGAAGGTA-TTTG
*
78634757 GTAATTTTACAAGTCGAAGGTATTTTA
1 GTAATTTTACAA-TCGAAGGTA-TTTG
* * * *
78634784 GTAATTTTACAAATTGAGGGCATTTCA
1 GTAATTTTAC-AATCGAAGGTATTT-G
* *
78634811 GTAATTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAATCGAA-GGTATTT-G
78634838 GTAATTTTA
1 GTAATTTTA
78634847 ATAAACTAAA
Statistics
Matches: 91, Mismatches: 20, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
26 17 0.19
27 69 0.76
28 5 0.05
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (25 bp):
GTAATTTTACAATCGAAGGTATTTG
Found at i:78637196 original size:42 final size:42
Alignment explanation
Indices: 78637149--78637240 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
78637139 TGGCCCATAG
* ** *
78637149 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
78637191 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
78637233 GCCCATTT
1 GCCCATTT
78637241 GGAGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:78637403 original size:24 final size:24
Alignment explanation
Indices: 78637376--78637433 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 24
78637366 TTGGAGGCCT
* *
78637376 AGCCTCTTTTAAT-AACTGGGGTAA
1 AGCC-CTTTTAATAAACAGGGGCAA
78637400 AGCCCTTTCTAATAAACAGGGGCAA
1 AGCCCTTT-TAATAAACAGGGGCAA
78637425 AGCCCTTTT
1 AGCCCTTTT
78637434 CGGTAAACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 4 0.13
24 9 0.30
25 17 0.57
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAAACAGGGGCAA
Found at i:78638418 original size:27 final size:27
Alignment explanation
Indices: 78638388--78638495 Score: 96
Period size: 27 Copynumber: 3.9 Consensus size: 27
78638378 GTAAATCTAC
78638388 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
78638415 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
78638441 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* **
78638471 AAA-TAAGGGGTATTTTGGTAATTTT
1 AAACCAA-GGGTATTTCAGTAATTTT
78638496 ACAAGCTAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
26 3 0.04
27 38 0.57
28 7 0.10
29 18 0.27
30 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:78638506 original size:27 final size:28
Alignment explanation
Indices: 78638476--78638549 Score: 98
Period size: 27 Copynumber: 2.7 Consensus size: 28
78638466 TTTGTAAATA
*
78638476 AGGGGTATTTTGGTAATTTTAC-AAGCT
1 AGGGGTATTTTGGTAATTTTACTAAGCG
* *
78638503 AGGGGTATTTTGGTAATTTTCCTAATCG
1 AGGGGTATTTTGGTAATTTTACTAAGCG
*
78638531 A-GGGTATTTTTGTAATTTT
1 AGGGGTATTTTGGTAATTTT
78638550 GTAATTCGAG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 38 0.90
28 4 0.10
ACGTcount: A:0.23, C:0.07, G:0.24, T:0.46
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACTAAGCG
Found at i:78638558 original size:27 final size:26
Alignment explanation
Indices: 78638450--78638563 Score: 97
Period size: 27 Copynumber: 4.2 Consensus size: 26
78638440 TAGAAAGTCA
*
78638450 AGGGTATTTCT-GTAATTTTGTAAAT-A
1 AGGGTATTT-TGGTAATTTTGT-AATCG
** * *
78638476 AGGGGTATTTTGGTAATTTTACAAGCT
1 A-GGGTATTTTGGTAATTTTGTAATCG
*
78638503 AGGGGTATTTTGGTAATTTTCCTAATCG
1 A-GGGTATTTTGGTAATTTT-GTAATCG
*
78638531 AGGGTATTTTTGTAATTTTGTAATTCG
1 AGGGTATTTTGGTAATTTTGTAA-TCG
78638558 AGGGTA
1 AGGGTA
78638564 AAACGATAAT
Statistics
Matches: 73, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
26 7 0.10
27 62 0.85
28 4 0.05
ACGTcount: A:0.25, C:0.06, G:0.25, T:0.44
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTGTAATCG
Found at i:78638573 original size:27 final size:27
Alignment explanation
Indices: 78638542--78638887 Score: 433
Period size: 27 Copynumber: 12.8 Consensus size: 27
78638532 GGGTATTTTT
* *
78638542 GTAATTTTGTAATTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
78638569 ATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
78638596 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
78638623 GTAATTCTAG-GAATCGAGGGTAAAATG
1 GTAATTCT-GTAAATCGAGGGTAAAACG
* **
78638650 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
78638677 GTAATTCTATAAATTGAAGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
78638704 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
78638731 GTAATTCTGTAAATCGAGGGAAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
78638758 GTAATTCTGTAAATCGAGAGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
78638785 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
78638812 GTAATTCTATAAATCGAGGGAAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
78638839 GTAATTCTGTAAATTGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
78638866 GTAATTTTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
78638888 CTTTGGTAAT
Statistics
Matches: 281, Mismatches: 36, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
27 281 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:78638906 original size:27 final size:26
Alignment explanation
Indices: 78638865--78639039 Score: 154
Period size: 27 Copynumber: 6.5 Consensus size: 26
78638855 AGGGTAAAAC
**
78638865 AGTAATTTTGTAAATCGAGGGTACTTT
1 AGTAATTTTACAAATCGAGGGTA-TTT
* * * *
78638892 GGTAATTTTAGAAATTGAGGGCATTTT
1 AGTAATTTTACAAATCGAGGGTA-TTT
*
78638919 AGTAATTTTAC-AATCGACGGTATTT
1 AGTAATTTTACAAATCGAGGGTATTT
* * * *
78638944 CGGTAATTTTATAAACCGGGGGTACTTT
1 -AGTAATTTTACAAATCGAGGGTA-TTT
* * *
78638972 GGTAATTTTACAAGTCGAAGGTATTT
1 AGTAATTTTACAAATCGAGGGTATTT
*
78638998 CAGTAATTTTACAAATCGAGGGCATTTT
1 -AGTAATTTTACAAATCGAGGGTA-TTT
78639026 AGTAATTTTACAAA
1 AGTAATTTTACAAA
78639040 CTAATGGTAT
Statistics
Matches: 118, Mismatches: 25, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
25 3 0.03
26 20 0.17
27 89 0.75
28 6 0.05
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (26 bp):
AGTAATTTTACAAATCGAGGGTATTT
Found at i:78638923 original size:54 final size:53
Alignment explanation
Indices: 78638865--78639062 Score: 188
Period size: 54 Copynumber: 3.7 Consensus size: 53
78638855 AGGGTAAAAC
* * *
78638865 AGTAATTTTGTAAATCGAGGGTACTTT-GGTAATTTTAGAAATTGAGGGCATTTT
1 AGTAATTTT-TAAATCGAAGGTA-TTTCGGTAATTTTACAAATCGAGGGCATTTT
* * * * * *
78638919 AGTAA-TTTTACAATCGACGGTATTTCGGTAATTTTATAAACCGGGGGTACTTT
1 AGTAATTTTTA-AATCGAAGGTATTTCGGTAATTTTACAAATCGAGGGCATTTT
* *
78638972 GGTAA-TTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGGGCATTTT
1 AGTAATTTTTA-AA-TCGAAGGTATTTCGGTAATTTTACAAATCGAGGGCATTTT
* *
78639026 AGTAA-TTTTACAAACTAATGGTATTTCGGTAATTTTA
1 AGTAATTTTTA-AATCGAA-GGTATTTCGGTAATTTTA
78639063 GTAAACTAAA
Statistics
Matches: 121, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
52 5 0.04
53 49 0.40
54 67 0.55
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
AGTAATTTTTAAATCGAAGGTATTTCGGTAATTTTACAAATCGAGGGCATTTT
Found at i:78638924 original size:81 final size:81
Alignment explanation
Indices: 78638579--78638981 Score: 319
Period size: 81 Copynumber: 5.0 Consensus size: 81
78638569 ATAATTCTGT
* * * ** * *
78638579 AAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTAG-GAATCGAGGG
1 AAATCGAGGGAAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATT-TTGTAAATCGAGGG
*** * *
78638643 TAAAATGGTAATTCTAT
65 TACTTTGGTAATTTTAG
* * * * * * * * *
78638660 AAATCGAGGGTAAAATAGTAATTCTATAAATTGAAGGTAAAATGGTAATTCTATAAATTGAGGGT
1 AAATCGAGGGAAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
*** *
78638725 AAAATGGTAATTCT-G
66 ACTTTGGTAATTTTAG
* *
78638740 TAAATCGAGGGAAAAACGGTAATTCTGTAAATCGAGAGTAAAACGGTAATTTTGTAAATCGAGGG
1 -AAATCGAGGGAAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGG
*** * *
78638805 TAAAATGGTAATTCTAT
65 TACTTTGGTAATTTTAG
* * *
78638822 AAATCGAGGGAAAAACGGTAATTCTGTAAATTGAGGGTAAAACAGTAATTTTGTAAATCGAGGGT
1 AAATCGAGGGAAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
78638887 ACTTTGGTAATTTTAG
66 ACTTTGGTAATTTTAG
* * **** * *** * * *
78638903 AAATTGAGGGCATTTTAGTAATT-T-TACAATCGACGGTATTTCGGTAATTTTATAAACCGGGGG
1 AAATCGAGGGAAAAACAGTAATTCTGTA-AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGG
78638966 TACTTTGGTAATTTTA
65 TACTTTGGTAATTTTA
78638982 CAAGTCGAAG
Statistics
Matches: 271, Mismatches: 47, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.01
80 44 0.16
81 225 0.83
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (81 bp):
AAATCGAGGGAAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
ACTTTGGTAATTTTAG
Found at i:78638973 original size:80 final size:81
Alignment explanation
Indices: 78638864--78639062 Score: 222
Period size: 80 Copynumber: 2.5 Consensus size: 81
78638854 GAGGGTAAAA
* * * * * *
78638864 CAGTAATTTTGTAAATCGAGGGTACTTTGGTAATTTTAGAAATTGAGGGCATTTTAGTAATTTTA
1 CAGTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAAGGCATTTCAGTAATTTTA
*
78638929 C-AATCGACGGTATTT
66 CAAATCGACGGCATTT
* * * *
78638944 CGGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTA
1 CAGTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAAGGCATTTCAGTAATTTTA
*
78639009 CAAATCGAGGGCATTT
66 CAAATCGACGGCATTT
* * ** *
78639025 TAGTAATTTTACAAACTAATGGTA-TTTCGGTAATTTTA
1 CAGTAATTTTATAAACCGAGGGTACTTT-GGTAATTTTA
78639063 GTAAACTAAA
Statistics
Matches: 98, Mismatches: 19, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
80 59 0.60
81 39 0.40
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (81 bp):
CAGTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAAGGCATTTCAGTAATTTTA
CAAATCGACGGCATTT
Found at i:78639051 original size:27 final size:27
Alignment explanation
Indices: 78638893--78639071 Score: 96
Period size: 27 Copynumber: 6.6 Consensus size: 27
78638883 GGGTACTTTG
* * * * *
78638893 GTAATTTTAGAAATTGAGGGCATTTTA
1 GTAATTTTACAAACTAAGGGTATTTCA
* * * *
78638920 GTAATTTTACAATC-GACGGTATTTCG
1 GTAATTTTACAAACTAAGGGTATTTCA
* *** *
78638946 GTAATTTTATAAACCGGGGGTACTTT-G
1 GTAATTTTACAAACTAAGGGTA-TTTCA
* *
78638973 GTAATTTTACAAGTCGAA-GGTATTTCA
1 GTAATTTTACAA-ACTAAGGGTATTTCA
* * *
78639000 GTAATTTTACAAA-TCGAGGGCATTTTA
1 GTAATTTTACAAACT-AAGGGTATTTCA
* *
78639027 GTAATTTTACAAACTAATGGTATTTCG
1 GTAATTTTACAAACTAAGGGTATTTCA
*
78639054 GTAATTTTAGTAAACTAA
1 GTAATTTTA-CAAACTAA
78639072 AGTATTCTAA
Statistics
Matches: 116, Mismatches: 28, Indels: 15
0.73 0.18 0.09
Matches are distributed among these distances:
26 24 0.21
27 80 0.69
28 12 0.10
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGGGTATTTCA
Found at i:78641916 original size:20 final size:21
Alignment explanation
Indices: 78641891--78641929 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
78641881 CTCTTGCAAC
*
78641891 AGGGC-ACACGCCCGTGTGAA
1 AGGGCAACACGCCCATGTGAA
78641911 AGGGCAACACGCCCATGTG
1 AGGGCAACACGCCCATGTG
78641930 GTCATTATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.26, C:0.31, G:0.33, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGAA
Found at i:78643128 original size:48 final size:49
Alignment explanation
Indices: 78643017--78643138 Score: 140
Period size: 48 Copynumber: 2.5 Consensus size: 49
78643007 AAGTCGATGC
* *
78643017 CATGTCCCATACATGGTCTTACACTAACTATCGAAATCGAGGCTGACGC
1 CATGTCCCAAACATGGTCTTACACTAACTATCGAAATCGAGGCTGACGA
* *** * *
78643066 CATGTCCCAGACATGGTCTTACACTAAC-ATCTCTATAC-ATGCTGATGA
1 CATGTCCCAAACATGGTCTTACACTAACTATCGAAAT-CGAGGCTGACGA
*
78643114 TATGTCCCAAACATGGTCTTACACT
1 CATGTCCCAAACATGGTCTTACACT
78643139 GGCACATCTC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
48 35 0.56
49 28 0.44
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (49 bp):
CATGTCCCAAACATGGTCTTACACTAACTATCGAAATCGAGGCTGACGA
Found at i:78643203 original size:46 final size:46
Alignment explanation
Indices: 78643115--78643322 Score: 219
Period size: 46 Copynumber: 4.5 Consensus size: 46
78643105 TGCTGATGAT
* * *
78643115 ATGTCCCAAACATGGTCTTACACTGG--CACATCTC-ATAGCCGATGC
1 ATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCGA-GGCCGATGC
*
78643160 ATGTCCCGGACATGTCTTACACTGGCT-TACATCTCGAGGCCGATGC
1 ATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGGCCGATGC
* * ** *
78643206 ATGTCCCAGACATGTCTTACACTGGCTCTCTTCTCAATACTGATGCC
1 ATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCGATG-C
* * *
78643253 ATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATAC
1 ATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGCCGATGC
78643300 ATGTCCCAGACATGTCTTACACT
1 ATGTCCCAGACATGTCTTACACT
78643323 AGCACACAAA
Statistics
Matches: 137, Mismatches: 18, Indels: 15
0.81 0.11 0.09
Matches are distributed among these distances:
44 12 0.09
45 11 0.08
46 61 0.45
47 30 0.22
48 22 0.16
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
ATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCGATGC
Found at i:78643278 original size:48 final size:48
Alignment explanation
Indices: 78642965--78643285 Score: 247
Period size: 46 Copynumber: 6.8 Consensus size: 48
78642955 GTATAATATC
* *
78642965 GATGCCATGTCCCAGACATGGTTTTACACTAG--CTCATCCATCAA-G-T
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-C-TCAATGCT
* ** * ** * *
78643011 CGATGCCATGTCCCATACATGGTCTTACACTAACTATCGAAATCGAGGCT
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ATCTCAATGCT
* ** *
78643061 GACGCCATGTCCCAGACATGGTCTTACACTAACATCTC-TAT-ACATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATCTCA-ATGCT
** * * *
78643109 GATGATATGTCCCAAACATGGTCTTACACTGG--CACATCTC-ATAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAAT-GCT
* * * *
78643155 GATG-CATGTCCCGGACAT-GTCTTACACTGGCT-TACATCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATCTCAATGCT
* *
78643201 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCTTCTCAATACT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAATGCT
78643247 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
78643286 AATGTGGCCG
Statistics
Matches: 223, Mismatches: 34, Indels: 33
0.77 0.12 0.11
Matches are distributed among these distances:
44 12 0.05
45 15 0.07
46 59 0.26
47 45 0.20
48 53 0.24
49 34 0.15
50 5 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAATGCT
Found at i:78643280 original size:94 final size:90
Alignment explanation
Indices: 78643115--78643425 Score: 263
Period size: 97 Copynumber: 3.3 Consensus size: 90
78643105 TGCTGATGAT
* *
78643115 ATGTCCCAAACATGGTCTTACACTGGCACATCTCATAGCCGATGCATGTCCCGGACATGTCTTAC
1 ATGTCCCAGACAT-GTCTTACACTGGCACATCTCATAGCCGATGCATGTCCCAGACATGTCTTAC
* *
78643180 ACTGGCT-TACAT-CTCGAGGCCGATGC
65 ACTGGCTCT-CATAAT-GAGGCCGATAC
* * *
78643206 ATGTCCCAGACATGTCTTACACTGGCTCTCTTCTCAATA-CTGATGCCATGTCCCAGACATGGTC
1 ATGTCCCAGACATGTCTTACACTGG--CACATCTC-ATAGCCGATG-CATGTCCCAGACAT-GTC
*
78643270 TTACACTGGCTCTCATAATGTGGCCGATAC
61 TTACACTGGCTCTCATAATGAGGCCGATAC
* * * * *** *
78643300 ATGTCCCAGACATGTCTTACACTAGCACA-CAAACA-ACCCAAATGTCATGGCATGAATATACAT
1 ATGTCCCAGACATGTCTTACACTGGCACATC--TCATAGCC-GATG-CAT-G--T-CCCAGACAT
* *
78643363 GGTCTTACACTGGCTCTCATAATGTGGTCGATAC
58 -GTCTTACACTGGCTCTCATAATGAGGCCGATAC
*
78643397 ATGTCCCAGACATGTCTTACACTAGCACA
1 ATGTCCCAGACATGTCTTACACTGGCACA
78643426 CAAACAACCC
Statistics
Matches: 185, Mismatches: 20, Indels: 24
0.81 0.09 0.10
Matches are distributed among these distances:
90 12 0.06
91 14 0.08
92 15 0.08
93 23 0.12
94 51 0.28
95 2 0.01
96 1 0.01
97 67 0.36
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (90 bp):
ATGTCCCAGACATGTCTTACACTGGCACATCTCATAGCCGATGCATGTCCCAGACATGTCTTACA
CTGGCTCTCATAATGAGGCCGATAC
Found at i:78643389 original size:97 final size:97
Alignment explanation
Indices: 78643262--78643455 Score: 370
Period size: 97 Copynumber: 2.0 Consensus size: 97
78643252 CATGTCCCAG
78643262 ACATGGTCTTACACTGGCTCTCATAATGTGGCCGATACATGTCCCAGACATGTCTTACACTAGCA
1 ACATGGTCTTACACTGGCTCTCATAATGTGGCCGATACATGTCCCAGACATGTCTTACACTAGCA
*
78643327 CACAAACAACCCAAATGTCATGGCATGAATAT
66 CACAAACAACCCAAATATCATGGCATGAATAT
*
78643359 ACATGGTCTTACACTGGCTCTCATAATGTGGTCGATACATGTCCCAGACATGTCTTACACTAGCA
1 ACATGGTCTTACACTGGCTCTCATAATGTGGCCGATACATGTCCCAGACATGTCTTACACTAGCA
78643424 CACAAACAACCCAAATATCATGGCATGAATAT
66 CACAAACAACCCAAATATCATGGCATGAATAT
78643456 CTGATTTATT
Statistics
Matches: 95, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
97 95 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (97 bp):
ACATGGTCTTACACTGGCTCTCATAATGTGGCCGATACATGTCCCAGACATGTCTTACACTAGCA
CACAAACAACCCAAATATCATGGCATGAATAT
Found at i:78646130 original size:29 final size:29
Alignment explanation
Indices: 78646091--78646226 Score: 130
Period size: 29 Copynumber: 4.7 Consensus size: 29
78646081 TCAAAGCCTT
* *
78646091 GCCACAAAGGCATCCTTTTAAGAGAGATA
1 GCCACAAAGGCTTCCTTTTAACAGAGATA
* *
78646120 GCCAAAAAGGCTTCCTTTTAACATAGATCA
1 GCCACAAAGGCTTCCTTTTAACAGAGAT-A
* ** * *
78646150 -CCACAAATGCTTTATTTTAATAGAGACA
1 GCCACAAAGGCTTCCTTTTAACAGAGATA
* * *
78646178 GCTACAAATGCTTCCTTTTAACAAAGATA
1 GCCACAAAGGCTTCCTTTTAACAGAGATA
* *
78646207 GCCACAAAGACATCCTTTTA
1 GCCACAAAGGCTTCCTTTTA
78646227 CGAAAACTGG
Statistics
Matches: 84, Mismatches: 21, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
28 1 0.01
29 82 0.98
30 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.13, T:0.27
Consensus pattern (29 bp):
GCCACAAAGGCTTCCTTTTAACAGAGATA
Found at i:78646226 original size:58 final size:58
Alignment explanation
Indices: 78646091--78646226 Score: 150
Period size: 58 Copynumber: 2.3 Consensus size: 58
78646081 TCAAAGCCTT
* *
78646091 GCCACAAAGGCATCCTTTTAAGAGAGATAGCCAAAAAGGCTTCCTTTTAACATAGATCA
1 GCCACAAA-GCATCCTTTTAAGAGAGACAGCCAAAAAGGCTTCCTTTTAACAAAGATCA
* ** * * * *
78646150 -CCACAAATGCTTTATTTTAATAGAGACAGCTACAAATGCTTCCTTTTAACAAAGAT-A
1 GCCACAAA-GCATCCTTTTAAGAGAGACAGCCAAAAAGGCTTCCTTTTAACAAAGATCA
78646207 GCCACAAAGACATCCTTTTA
1 GCCACAAAG-CATCCTTTTA
78646227 CGAAAACTGG
Statistics
Matches: 62, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
57 2 0.03
58 60 0.97
ACGTcount: A:0.38, C:0.22, G:0.13, T:0.27
Consensus pattern (58 bp):
GCCACAAAGCATCCTTTTAAGAGAGACAGCCAAAAAGGCTTCCTTTTAACAAAGATCA
Found at i:78650375 original size:37 final size:37
Alignment explanation
Indices: 78650314--78650429 Score: 171
Period size: 37 Copynumber: 3.1 Consensus size: 37
78650304 TTATTACGAA
* * *
78650314 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
78650351 GTCTTACCCAGACAAAATCCCCACACGTAA-TCATCGG
1 GTCTTACCCGGACAAAATCCCCACACG-AAGTCATCGG
*
78650388 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
78650425 GTCTT
1 GTCTT
78650430 TAGAGCTCGG
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.01
37 68 0.96
38 2 0.03
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:78650626 original size:47 final size:47
Alignment explanation
Indices: 78650548--78651017 Score: 708
Period size: 47 Copynumber: 9.7 Consensus size: 47
78650538 CCCTTCGGGA
* * * * * *
78650548 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78650595 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78650642 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78650689 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78650736 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78650783 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78650832 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78650879 CTTATCACATATATACACTTTCACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--A---T---ACACTTTCACATTCATCACATCGGCCATTAGGC
78650936 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
78650983 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
78651018 AGAATCCTAA
Statistics
Matches: 395, Mismatches: 15, Indels: 26
0.91 0.03 0.06
Matches are distributed among these distances:
46 1 0.00
47 294 0.74
49 51 0.13
50 1 0.00
51 1 0.00
53 1 0.00
54 1 0.00
55 4 0.01
57 41 0.10
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78650914 original size:57 final size:57
Alignment explanation
Indices: 78650846--78650960 Score: 230
Period size: 57 Copynumber: 2.0 Consensus size: 57
78650836 TCACATATAT
78650846 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
78650903 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
78650960 A
1 A
78650961 TTCATCACAT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.30, C:0.31, G:0.07, T:0.31
Consensus pattern (57 bp):
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
Found at i:78651007 original size:104 final size:104
Alignment explanation
Indices: 78650799--78650996 Score: 387
Period size: 104 Copynumber: 1.9 Consensus size: 104
78650789 ACATATATAT
78650799 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
78650864 CATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
66 CATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
78650903 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
*
78650968 CATCGGCCATTAGGCCTTATCTCATATAT
66 CATCGGCCATTAGGCCTTATCACATATAT
78650997 GCATGTTCAC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 93 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (104 bp):
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
CATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
Found at i:78654412 original size:40 final size:40
Alignment explanation
Indices: 78654367--78654562 Score: 198
Period size: 40 Copynumber: 4.9 Consensus size: 40
78654357 CGAGTACACG
* * * *
78654367 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
* *** *
78654407 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
* * *
78654447 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
* * *
78654487 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATGG
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATAT-A
* * *
78654528 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-CAGCACGAATGCTCTTCGGAACTTAGCCCGGA
78654563 CATCATTCAA
Statistics
Matches: 134, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
40 120 0.90
41 8 0.06
42 6 0.04
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
Found at i:78654523 original size:80 final size:81
Alignment explanation
Indices: 78654380--78654562 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
78654370 CCAGCATGAT
* * ***
78654380 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAGCACGGATA
78654445 T-ATCAC-TAGCACGAA
66 TGATCACTTAGCAC-AA
* * * *
78654460 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC-CGGAT
1 TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAG-CACGGAT
*
78654524 ATGGTCACTTAGCACAA
65 ATGATCACTTAGCACAA
*
78654541 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
78654563 CATCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
80 72 0.83
81 9 0.10
82 6 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAGCACGGATA
TGATCACTTAGCACAA
Found at i:78654907 original size:29 final size:29
Alignment explanation
Indices: 78654868--78654946 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
78654858 CTTAATAATC
*
78654868 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
78654898 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
78654927 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
78654947 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:78654989 original size:43 final size:43
Alignment explanation
Indices: 78654928--78655030 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
78654918 TGCATTTCAA
78654928 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
78654971 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
78655014 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
78655031 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:78656343 original size:37 final size:37
Alignment explanation
Indices: 78656293--78656408 Score: 187
Period size: 37 Copynumber: 3.1 Consensus size: 37
78656283 TTATTACGAA
* * * *
78656293 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
78656330 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
*
78656367 GTCTTACCTGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
78656404 GTCTT
1 GTCTT
78656409 TAGAGCTCGG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
Found at i:78656598 original size:47 final size:47
Alignment explanation
Indices: 78656531--78656845 Score: 497
Period size: 47 Copynumber: 6.7 Consensus size: 47
78656521 TCGGGACTTG
* * * * * * * *
78656531 TCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
78656578 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
78656625 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
78656672 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
78656719 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
78656768 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* * *
78656815 TCTCATATATGCA-TGTTCACATCCATCACAT
1 TCACATATATACACT-TTCACATTCATCACAT
78656846 AGAATCCTAA
Statistics
Matches: 254, Mismatches: 11, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 206 0.81
49 47 0.19
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:78656756 original size:96 final size:96
Alignment explanation
Indices: 78656531--78656824 Score: 488
Period size: 96 Copynumber: 3.1 Consensus size: 96
78656521 TCGGGACTTG
* * * * * * *
78656531 TCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTT
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
78656594 TCACATTCATCACATCGGCCATTAGGCCTTA
66 TCACATTCATCACATCGGCCATTAGGCCTTA
78656625 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
78656688 TCACATTCATCACATCGGCCATTAGGCCTTA
66 TCACATTCATCACATCGGCCATTAGGCCTTA
78656719 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
78656784 TCACATTCATCACATCGGCCATTAGGCCTTA
66 TCACATTCATCACATCGGCCATTAGGCCTTA
*
78656815 TCTCATATAT
1 TCACATATAT
78656825 GCATGTTCAC
Statistics
Matches: 188, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
93 1 0.01
94 88 0.47
96 99 0.53
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:78656787 original size:143 final size:141
Alignment explanation
Indices: 78656531--78656845 Score: 506
Period size: 143 Copynumber: 2.2 Consensus size: 141
78656521 TCGGGACTTG
* * * * *
78656531 TCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTTC
1 TCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTC
78656596 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
78656661 ATTAGGCCTTA
131 ATTAGGCCTTA
* * *
78656672 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATATACACTT
78656737 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
64 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
78656802 CCATTAGGCCTTA
129 CCATTAGGCCTTA
* *
78656815 TCTCATATATGCA-TGTTCACATCCATCACAT
1 TCACATATATACACT-TTCACATCCATCACAT
78656846 AGAATCCTAA
Statistics
Matches: 160, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
141 43 0.27
142 1 0.01
143 116 0.73
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
TCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
ATTAGGCCTTA
Found at i:78662796 original size:6 final size:6
Alignment explanation
Indices: 78662786--78662826 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
78662776 GTCTAATAGA
* *
78662786 ATAAAA ATAAAC ATAAAT ATAAAT ATAAAT ATAAAT ATAAA
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAA
78662827 ACAAATGAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (6 bp):
ATAAAT
Found at i:78665701 original size:19 final size:19
Alignment explanation
Indices: 78665658--78665701 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
78665648 TTTTGCAAGA
* *
78665658 TAGCTGAGCAAACTGCATT
1 TAGCTTAGCAAACTCCATT
78665677 TAGCTTAGCAAACTTCCATT
1 TAGCTTAGCAAAC-TCCATT
78665697 T-GCTT
1 TAGCTT
78665702 GTCAAAAGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (19 bp):
TAGCTTAGCAAACTCCATT
Found at i:78687390 original size:33 final size:32
Alignment explanation
Indices: 78687353--78687414 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 32
78687343 TTCATGCTTG
*
78687353 AAACATATACCAAATCATATCATTCTATAAGCC
1 AAACACATACCAAATCATATCATT-TATAAGCC
* *
78687386 AAACACATACCAAATTATATGATTTATAA
1 AAACACATACCAAATCATATCATTTATAA
78687415 CCTTGATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 5 0.19
33 21 0.81
ACGTcount: A:0.48, C:0.19, G:0.03, T:0.29
Consensus pattern (32 bp):
AAACACATACCAAATCATATCATTTATAAGCC
Found at i:78699135 original size:12 final size:12
Alignment explanation
Indices: 78699101--78699159 Score: 50
Period size: 12 Copynumber: 5.0 Consensus size: 12
78699091 TTTTCCTTTT
78699101 TTTATACTATAT-
1 TTTATA-TATATA
78699113 TTTA-ATATATA
1 TTTATATATATA
78699124 TTTATATATATA
1 TTTATATATATA
* * * * *
78699136 GTTAAAAAAATC
1 TTTATATATATA
78699148 TTTATATATATA
1 TTTATATATATA
78699160 CATAAACAGT
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
10 5 0.14
11 5 0.14
12 25 0.71
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (12 bp):
TTTATATATATA
Found at i:78699195 original size:13 final size:13
Alignment explanation
Indices: 78699174--78699206 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
78699164 AACAGTTTCG
78699174 AAAAGAAAAAATA
1 AAAAGAAAAAATA
*
78699187 AAGAGAAAAAATA
1 AAAAGAAAAAATA
78699200 AAAAGAA
1 AAAAGAA
78699207 CCTTTGCACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (13 bp):
AAAAGAAAAAATA
Found at i:78699780 original size:23 final size:23
Alignment explanation
Indices: 78699753--78699800 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
78699743 GAAGTGATTA
* * *
78699753 ATGGCTCTCTAGAGCTTCCCGAT
1 ATGGCTCGCTAGAACTTCCCAAT
*
78699776 ATGGCTCGCTTGAACTTCCCAAT
1 ATGGCTCGCTAGAACTTCCCAAT
78699799 AT
1 AT
78699801 AAGGCTATCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (23 bp):
ATGGCTCGCTAGAACTTCCCAAT
Found at i:78699939 original size:25 final size:25
Alignment explanation
Indices: 78699911--78699980 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
78699901 AGACCAGATA
*
78699911 AGCTTCCCGTTACATGGCTCACAAG
1 AGCTTCCCGTTATATGGCTCACAAG
*
78699936 AGCTTCCCGTTATATGGCTCACATG
1 AGCTTCCCGTTATATGGCTCACAAG
78699961 AGCTTCCCGTTATATGGCTC
1 AGCTTCCCGTTATATGGCTC
78699981 GAGAGAGAGC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (25 bp):
AGCTTCCCGTTATATGGCTCACAAG
Found at i:78699939 original size:50 final size:50
Alignment explanation
Indices: 78699885--78699980 Score: 122
Period size: 50 Copynumber: 1.9 Consensus size: 50
78699875 TGGCTCTTAT
*
78699885 GAGCTTCCCATTATACAGAC-CAGATAAGCTTCCCGTTACATGGCTCACAA
1 GAGCTTCCCATTATA-AGACTCACATAAGCTTCCCGTTACATGGCTCACAA
* * * * *
78699935 GAGCTTCCCGTTATATGGCTCACATGAGCTTCCCGTTATATGGCTC
1 GAGCTTCCCATTATAAGACTCACATAAGCTTCCCGTTACATGGCTC
78699981 GAGAGAGAGC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
49 2 0.05
50 37 0.95
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (50 bp):
GAGCTTCCCATTATAAGACTCACATAAGCTTCCCGTTACATGGCTCACAA
Found at i:78708125 original size:37 final size:37
Alignment explanation
Indices: 78708084--78708157 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
78708074 TTTTTTAAAC
* * *
78708084 AATGTTAAAAAACTTGAATCAAAAACTGTAACAAAAA
1 AATGTTAAAAAAATTGAATAAAAAACTATAACAAAAA
78708121 AATGTTAAAAAAATTGAATAAAAAACTATAACAAAAA
1 AATGTTAAAAAAATTGAATAAAAAACTATAACAAAAA
78708158 TTACTTTAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.64, C:0.08, G:0.07, T:0.22
Consensus pattern (37 bp):
AATGTTAAAAAAATTGAATAAAAAACTATAACAAAAA
Found at i:78709011 original size:18 final size:18
Alignment explanation
Indices: 78708987--78709025 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
78708977 ATAATAAATA
78708987 ATATATAATGTACTACTATT
1 ATATAT-ATG-ACTACTATT
*
78709007 ATATATATGACTATTATT
1 ATATATATGACTACTATT
78709025 A
1 A
78709026 CAATATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 3 0.17
20 6 0.33
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (18 bp):
ATATATATGACTACTATT
Found at i:78709160 original size:5 final size:5
Alignment explanation
Indices: 78709088--78709156 Score: 129
Period size: 5 Copynumber: 13.8 Consensus size: 5
78709078 AACTATTAAT
78709088 ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG
1 ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG
*
78709138 ATATG ATATG ATATA ATAT
1 ATATG ATATG ATATG ATAT
78709157 AATAGAAGGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 63 1.00
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.41
Consensus pattern (5 bp):
ATATG
Found at i:78720064 original size:100 final size:100
Alignment explanation
Indices: 78719891--78720078 Score: 324
Period size: 100 Copynumber: 1.9 Consensus size: 100
78719881 TATTGTGAGG
** *
78719891 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTACAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCACATGTGTAGTACT
78719956 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
*
78719991 TCACGTGTACAGTACTAAGTGCAGGCTACTACGTGTACC-AGATTATTGGTCACATGTGTAGTAC
1 TCACGTGTACAGTACTAAGTGCAGGCTACTACGTGTACCGA-ATAATTGGTCACATGTGTAGTAC
78720055 TAAGTGCAGGCTACTATGCGTACC
65 TAAGTGCAGGCTACTATGCGTACC
78720079 AGATAGCTTC
Statistics
Matches: 83, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
99 1 0.01
100 82 0.99
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.28
Consensus pattern (100 bp):
TCACGTGTACAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
Done.