Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 238 of 344
Found at i:78720078 original size:49 final size:49
Alignment explanation
Indices: 78719889--78720083 Score: 239
Period size: 49 Copynumber: 3.9 Consensus size: 49
78719879 ACTATTGTGA
* *
78719889 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GAATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAG-ATAATT
* * * *
78719938 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-T-T
* * ** * *
78719989 GATCACGTGTACAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
*
78720038 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
78720084 GCTTCGGCTA
Statistics
Matches: 121, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
49 80 0.66
50 3 0.02
51 38 0.31
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:78723998 original size:14 final size:14
Alignment explanation
Indices: 78723979--78724006 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
78723969 AAGCTCAGTG
78723979 TGAGTTTTAAGCAT
1 TGAGTTTTAAGCAT
78723993 TGAGTTTTAAGCAT
1 TGAGTTTTAAGCAT
78724007 ACTTAACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (14 bp):
TGAGTTTTAAGCAT
Found at i:78726237 original size:6 final size:6
Alignment explanation
Indices: 78726218--78726327 Score: 150
Period size: 6 Copynumber: 18.3 Consensus size: 6
78726208 ACCAACACTT
* * *
78726218 ATATAC ATAGAC ATATAC ATATAC ATATAC ATATAT ATATAC ATGTAC
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC
* *
78726266 ATGTAC ATGTAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC
*
78726314 ACATAAC ATA-AC AT
1 ATAT-AC ATATAC AT
78726328 TCAAAATGCA
Statistics
Matches: 95, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
5 4 0.04
6 87 0.92
7 4 0.04
ACGTcount: A:0.48, C:0.16, G:0.04, T:0.32
Consensus pattern (6 bp):
ATATAC
Found at i:78729429 original size:46 final size:46
Alignment explanation
Indices: 78729366--78729538 Score: 265
Period size: 46 Copynumber: 3.8 Consensus size: 46
78729356 TATATCTCGA
* * *
78729366 GGCCAATGCATGTCCCAGATATATCTTACACTGGCTTTCATAATGT
1 GGCCGATGCATGTCCCAGACATATCTTACACTGGCTCTCATAATGT
* *
78729412 GGCCGATGTATGTCCCAGACATATCTTACACTTGCTCTCATAATGT
1 GGCCGATGCATGTCCCAGACATATCTTACACTGGCTCTCATAATGT
* *
78729458 GGCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATAATGT
1 GGCCGATGCATGTCCCAGACATATCTTACACTGGCTCTCATAATGT
* *
78729504 GGCTGATGCATGTCCCAGACATGTCTTACACTGGC
1 GGCCGATGCATGTCCCAGACATATCTTACACTGGC
78729539 ACACATGCCA
Statistics
Matches: 116, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 116 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAGACATATCTTACACTGGCTCTCATAATGT
Found at i:78730897 original size:18 final size:18
Alignment explanation
Indices: 78730874--78730925 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
78730864 CAATTTTATA
78730874 TTCCATTTCACATTTCAC
1 TTCCATTTCACATTTCAC
*
78730892 TTCCATTTCACA--TCAT
1 TTCCATTTCACATTTCAC
*
78730908 TTCCCATTTCCCATTTCA
1 TT-CCATTTCACATTTCA
78730926 AATATCAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
16 5 0.17
17 9 0.31
18 12 0.41
19 3 0.10
ACGTcount: A:0.21, C:0.35, G:0.00, T:0.44
Consensus pattern (18 bp):
TTCCATTTCACATTTCAC
Found at i:78743937 original size:29 final size:29
Alignment explanation
Indices: 78743902--78743975 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
78743892 GTTGTGAGAT
* *
78743902 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
78743931 TGGCACTAAGTGTGTGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
78743960 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
78743976 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:78752391 original size:3 final size:3
Alignment explanation
Indices: 78752383--78752429 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
78752373 TTGTGATGCT
78752383 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
78752430 GTTTGTTCAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:78757075 original size:40 final size:41
Alignment explanation
Indices: 78757020--78757309 Score: 308
Period size: 41 Copynumber: 7.1 Consensus size: 41
78757010 AAAAATTGTA
* * * * * *
78757020 AAAACACATAGCAATAGTGGCG-TTTTACCAAAAACGCCACG
1 AAAA-ACAGAGCATTAGCGGCGCTTTTAGCAAAAACGCCGCT
* * *
78757061 AAAAACAGAGCAATAGCGGCG-TTTTAGTAAAAAACGCCGCA
1 AAAAACAGAGCATTAGCGGCGCTTTTAG-CAAAAACGCCGCT
*
78757102 AAAAACAGAGCATTAGCGGCGCTTTTTGC-AAAACGCCGCT
1 AAAAACAGAGCATTAGCGGCGCTTTTAGCAAAAACGCCGCT
*
78757142 AAAAACTAGAGCATTAGCGGCGCTTTT-GGAAAAACGCCGCT
1 AAAAAC-AGAGCATTAGCGGCGCTTTTAGCAAAAACGCCGCT
**
78757183 AAAAACCAGAGCATTAGCGGCGCTTTT-GGTAAAACGCCGCT
1 AAAAA-CAGAGCATTAGCGGCGCTTTTAGCAAAAACGCCGCT
78757224 AAAAACCAGAGCATTAGCGGCGCTTTT-G-ATAAAACGCCGCT
1 AAAAA-CAGAGCATTAGCGGCGCTTTTAGCA-AAAACGCCGCT
* * **
78757265 AAAAACCAGAACATTAGCGGCACTTTT-GGTAAAACGCCGCT
1 AAAAA-CAGAGCATTAGCGGCGCTTTTAGCAAAAACGCCGCT
78757306 AAAA
1 AAAA
78757310 GTCATATAAC
Statistics
Matches: 226, Mismatches: 16, Indels: 14
0.88 0.06 0.05
Matches are distributed among these distances:
40 37 0.16
41 183 0.81
42 6 0.03
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.18
Consensus pattern (41 bp):
AAAAACAGAGCATTAGCGGCGCTTTTAGCAAAAACGCCGCT
Found at i:78757153 original size:82 final size:81
Alignment explanation
Indices: 78757050--78757309 Score: 380
Period size: 82 Copynumber: 3.2 Consensus size: 81
78757040 CGTTTTACCA
* * * *
78757050 AAAACGCCACGAAAAACAGAGCAATAGCGGCG-TTTTAGTAAAAAACGCCGC-AAAAAACAGAGC
1 AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTT-G-AAAAAACGCCGCTAAAAACCAGAGC
* *
78757113 ATTAGCGGCGCTTTTTGC
64 ATTAGCGGCGCTTTTGGT
*
78757131 AAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAAACCAGAGCA
1 AAAACGCCGCTAAAAAC-AGAGCATTAGCGGCGCTTTTGAAAAAACGCCGCTAAAAACCAGAGCA
78757196 TTAGCGGCGCTTTTGGT
65 TTAGCGGCGCTTTTGGT
* *
78757213 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGATAAAACGCCGCTAAAAACCAGAACA
1 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGAAAAAACGCCGCTAAAAACCAGAGCA
*
78757278 TTAGCGGCACTTTTGGT
65 TTAGCGGCGCTTTTGGT
78757295 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
78757310 GTCATATAAC
Statistics
Matches: 164, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
81 26 0.16
82 133 0.81
83 5 0.03
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (81 bp):
AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGAAAAAACGCCGCTAAAAACCAGAGCAT
TAGCGGCGCTTTTGGT
Found at i:78757237 original size:123 final size:121
Alignment explanation
Indices: 78757049--78757309 Score: 373
Period size: 123 Copynumber: 2.1 Consensus size: 121
78757039 GCGTTTTACC
* *
78757049 AAAAACGCCACGAAAAACAGAGCAATAGCGGCGTTTTAGTAAAAAACGCCGCAAAAAACAGAGCA
1 AAAAACGCCGCTAAAAACAGAGCAATAGCGGCGTTTTAGT-AAAAACGCCGCAAAAAACAGAGCA
* * *
78757114 TTAGCGGCGCTTTTTG-CAAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTGG
65 TTAGCGGCGC-TTTTGACAAAACGCCGCTAAAAACCAGAACATTAGCGGCACTTTTGG
* * *
78757171 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT-AAAACGCCGCTAAAAACCAGAG
1 AAAAACGCCGCTAAAAA-CAGAGCAATAGCGGCG-TTTTAGTAAAAACGCCGC-AAAAAACAGAG
*
78757235 CATTAGCGGCGCTTTTGATAAAACGCCGCTAAAAACCAGAACATTAGCGGCACTTTTGG
63 CATTAGCGGCGCTTTTGACAAAACGCCGCTAAAAACCAGAACATTAGCGGCACTTTTGG
*
78757294 TAAAACGCCGCTAAAA
1 AAAAACGCCGCTAAAA
78757310 GTCATATAAC
Statistics
Matches: 125, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
122 30 0.24
123 89 0.71
124 6 0.05
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (121 bp):
AAAAACGCCGCTAAAAACAGAGCAATAGCGGCGTTTTAGTAAAAACGCCGCAAAAAACAGAGCAT
TAGCGGCGCTTTTGACAAAACGCCGCTAAAAACCAGAACATTAGCGGCACTTTTGG
Found at i:78757519 original size:21 final size:21
Alignment explanation
Indices: 78757471--78757519 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
78757461 TATCATTATA
*
78757471 GTTTATGGTTTATGGTTCAAG
1 GTTTATGGTTTAGGGTTCAAG
* * * *
78757492 ATATATGGTTTCGGGTTTAAG
1 GTTTATGGTTTAGGGTTCAAG
78757513 GTTTATG
1 GTTTATG
78757520 AGTTAACTAT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.04, G:0.29, T:0.47
Consensus pattern (21 bp):
GTTTATGGTTTAGGGTTCAAG
Found at i:78757568 original size:21 final size:21
Alignment explanation
Indices: 78757544--78757736 Score: 63
Period size: 21 Copynumber: 8.7 Consensus size: 21
78757534 TAAGATATAT
78757544 GGTTTAGGGTTTAGGGTTTAA
1 GGTTTAGGGTTTAGGGTTTAA
**
78757565 GGTTTAGGAGTTAACTAGTATTTGAA
1 GGTTTAGG-GTT---TAGGGTTT-AA
** *
78757591 GGTTTATGATGAATTATGGGTTTAG
1 GGTTTA-G--GGTTTA-GGGTTTAA
* * * *
78757616 GGATTATGATTTAGGGTTTAG
1 GGTTTAGGGTTTAGGGTTTAA
*
78757637 GGGTTAGGG-TT-GGAGTTTAA
1 GGTTTAGGGTTTAGG-GTTTAA
* *
78757657 GGTGTAAGGGTTT-GGGGTTAA
1 GGT-TTAGGGTTTAGGGTTTAA
* *
78757678 GGGTTAAGGGTTTAGAGTTT-A
1 -GGTTTAGGGTTTAGGGTTTAA
* *
78757699 GTGTTTATGGG-ATAGGGGTTAAGA
1 G-GTTTA-GGGTTTA-GGGTTTA-A
78757723 GGTTTAGGGTTTAG
1 GGTTTAGGGTTTAG
78757737 ATTAATTAGT
Statistics
Matches: 128, Mismatches: 24, Indels: 39
0.67 0.13 0.20
Matches are distributed among these distances:
19 2 0.02
20 10 0.08
21 48 0.38
22 30 0.23
23 7 0.05
24 2 0.02
25 14 0.11
26 12 0.09
27 1 0.01
28 1 0.01
29 1 0.01
ACGTcount: A:0.23, C:0.01, G:0.38, T:0.39
Consensus pattern (21 bp):
GGTTTAGGGTTTAGGGTTTAA
Found at i:78757637 original size:7 final size:7
Alignment explanation
Indices: 78757608--78757736 Score: 75
Period size: 7 Copynumber: 18.1 Consensus size: 7
78757598 GATGAATTAT
78757608 GGGTTTA
1 GGGTTTA
*
78757615 GGGATTA
1 GGGTTTA
* *
78757622 TGATTTA
1 GGGTTTA
78757629 GGGTTTA
1 GGGTTTA
*
78757636 GGGGTTA
1 GGGTTTA
78757643 GGG-TT-
1 GGGTTTA
78757648 GGAGTTTA
1 GG-GTTTA
* *
78757656 AGGTGTAA
1 GGGT-TTA
*
78757664 GGGTTTG
1 GGGTTTA
*
78757671 GGGTTAA
1 GGGTTTA
*
78757678 GGGTTAA
1 GGGTTTA
78757685 GGGTTTA
1 GGGTTTA
*
78757692 GAGTTTA
1 GGGTTTA
*
78757699 GTGTTTA
1 GGGTTTA
*
78757706 TGGG-ATA
1 -GGGTTTA
*
78757713 GGGGTTAA
1 -GGGTTTA
78757721 GAGGTTTA
1 G-GGTTTA
78757729 GGGTTTA
1 GGGTTTA
78757736 G
1 G
78757737 ATTAATTAGT
Statistics
Matches: 92, Mismatches: 23, Indels: 14
0.71 0.18 0.11
Matches are distributed among these distances:
5 2 0.02
6 3 0.03
7 72 0.78
8 15 0.16
ACGTcount: A:0.21, C:0.00, G:0.42, T:0.37
Consensus pattern (7 bp):
GGGTTTA
Found at i:78759035 original size:15 final size:15
Alignment explanation
Indices: 78759015--78759045 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
78759005 TTGAAGGTAA
78759015 CCTACTGGTTTTCTT
1 CCTACTGGTTTTCTT
78759030 CCTACTGGTTTTCTT
1 CCTACTGGTTTTCTT
78759045 C
1 C
78759046 TAATTCAAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.29, G:0.13, T:0.52
Consensus pattern (15 bp):
CCTACTGGTTTTCTT
Found at i:78760248 original size:12 final size:12
Alignment explanation
Indices: 78760231--78760280 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
78760221 AGTTGCTGGA
78760231 AATTGAGATGTT
1 AATTGAGATGTT
*
78760243 AATTGAGGTGTAT
1 AATTGAGATGT-T
* *
78760256 AAAT--GTTGTT
1 AATTGAGATGTT
78760266 AATTGAGATGTT
1 AATTGAGATGTT
78760278 AAT
1 AAT
78760281 ATGTGTGTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
10 4 0.13
11 4 0.13
12 18 0.60
13 4 0.13
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.42
Consensus pattern (12 bp):
AATTGAGATGTT
Found at i:78760284 original size:23 final size:23
Alignment explanation
Indices: 78760239--78760284 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
78760229 GAAATTGAGA
*
78760239 TGTTAATTGAGGTGTATAAATGT
1 TGTTAATTGAGATGTATAAATGT
78760262 TGTTAATTGAGATGT-TAATATGT
1 TGTTAATTGAGATGTATAA-ATGT
78760285 GTGTGTGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46
Consensus pattern (23 bp):
TGTTAATTGAGATGTATAAATGT
Found at i:78760688 original size:23 final size:23
Alignment explanation
Indices: 78760662--78761107 Score: 378
Period size: 23 Copynumber: 19.4 Consensus size: 23
78760652 AAATGTTGTT
78760662 AATTG-AGATGTTAAAGTGCTGCA
1 AATTGAAG-TGTTAAAGTGCTGCA
*
78760685 AATTGAAGTGTTTAAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
*
78760708 AATTGAACTGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* **
78760731 AATTGAAGTGTTAGAGTGCTATA
1 AATTGAAGTGTTAAAGTGCTGCA
* * *
78760754 AATTGGAGTGTTTAAGTACTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
78760777 AATTGAAGTGTT-TAGTTGCTGGA
1 AATTGAAGTGTTAAAG-TGCTGCA
* **
78760800 AATTG-AGATGTTTAAA-TGTTGTT
1 AATTGAAG-TG-TTAAAGTGCTGCA
*
78760823 AATTGAAATGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
78760846 AATTGAAGTGTTTTAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
78760869 AATTG-AGTGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* **
78760891 AATTGAAGTGTTTAAA-TGTTGTT
1 AATTGAAGTG-TTAAAGTGCTGCA
* *
78760914 AATTGAAATGTTAAAGTGCCGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
78760937 AATTGAAGTGTTTGAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
*
78760960 AATTGAAGTGCTTAAA-TGTTGCA
1 AATTGAAGTG-TTAAAGTGCTGCA
** **
78760983 AATTGAAGTGCTATAAA-TATTGTT
1 AATTGAAGTG-T-TAAAGTGCTGCA
* *
78761007 AATTGAAATGTTTAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
78761030 AATTGAAGTGTTTTAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
78761053 AATTGAAGTGTTAAAGTGCTGCA
1 AATTGAAGTGTTAAAGTGCTGCA
* *
78761076 AATTGAAGTGTTTGAA-TGCTGTA
1 AATTGAAGTG-TTAAAGTGCTGCA
78761099 AATTGAAGT
1 AATTGAAGT
78761108 TGTGGATTGA
Statistics
Matches: 342, Mismatches: 61, Indels: 40
0.77 0.14 0.09
Matches are distributed among these distances:
21 4 0.01
22 41 0.12
23 247 0.72
24 49 0.14
25 1 0.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (23 bp):
AATTGAAGTGTTAAAGTGCTGCA
Found at i:78760720 original size:46 final size:45
Alignment explanation
Indices: 78760672--78761107 Score: 446
Period size: 46 Copynumber: 9.5 Consensus size: 45
78760662 AATTGAGATG
* * *
78760672 TTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAACTG-
1 TTAAA-TGCTGTAAATTGAAGTG-TTAAATGCTGCAAATTGAAGTGT
* * ** *
78760718 TTAAAGTGCTGCAAATTGAAGTGTTAGAGTGCTATAAATTGGAGTGT
1 TTAAA-TGCTGTAAATTGAAGTGTTA-AATGCTGCAAATTGAAGTGT
* * * ** *
78760765 TTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGAAATTG-AGATGT
1 TTAAATGCTGTAAATTGAAGTG-TTAAATGCTGCAAATTGAAG-TGT
* * *
78760811 TTAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGT
1 TTAAATGCTGTAAATTGAAGTGTTAAA-TGCTGCAAATTGAAGTGT
*
78760857 TTTAATGCTGTAAATTG-AGTGTTAAAGTGCTGCAAATTGAAGTGT
1 TTAAATGCTGTAAATTGAAGTGTTAAA-TGCTGCAAATTGAAGTGT
* * * *
78760902 TTAAATGTTGTTAATTGAAATGTTAAAGTGCCGCAAATTGAAGTGT
1 TTAAATGCTGTAAATTGAAGTGTTAAA-TGCTGCAAATTGAAGTGT
* *
78760948 TTGAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGCT
1 TTAAATGCTGTAAATTGAAGTG-TTAAATGCTGCAAATTGAAGTG-T
* ** * * *
78760995 ATAAATATTGTTAATTGAAATGTTTAAGTGCTGCAAATTGAAGTGT
1 TTAAATGCTGTAAATTGAAGTG-TTAAATGCTGCAAATTGAAGTGT
*
78761041 TTTAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGT
1 TTAAATGCTGTAAATTGAAGTGTTAAA-TGCTGCAAATTGAAGTGT
*
78761087 TTGAATGCTGTAAATTGAAGT
1 TTAAATGCTGTAAATTGAAGT
78761108 TGTGGATTGA
Statistics
Matches: 329, Mismatches: 51, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
45 53 0.16
46 225 0.68
47 51 0.16
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.37
Consensus pattern (45 bp):
TTAAATGCTGTAAATTGAAGTGTTAAATGCTGCAAATTGAAGTGT
Found at i:78761024 original size:93 final size:92
Alignment explanation
Indices: 78760678--78761105 Score: 510
Period size: 92 Copynumber: 4.7 Consensus size: 92
78760668 GATGTTAAAG
* * * * ** *
78760678 TGCTGCAAATTGAAGTGTTTAAA-TGCTGTAAATTGAACTGT-TAAAGTGCTGCAAATTGAAGTG
1 TGCTGTAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTGTATAAA-TGTTGTTAATTGAAATG
* ** *
78760741 TTAGAGTGCTATAAATTGGAGTG-TTTAA
64 TTAAAGTGCTGCAAATTGAAGTGTTTTAA
* * * * *
78760769 GTACTGCAAATTGAAGTGTT-TAGTTGCTGGAAATTG-AGATGTTTAAATGTTGTTAATTGAAAT
1 -TGCTGTAAATTGAAGTGTTAAAG-TGCTGCAAATTGAAG-TGTATAAATGTTGTTAATTGAAAT
78760832 GTTAAAGTGCTGCAAATTGAAGTGTTTTAA
63 GTTAAAGTGCTGCAAATTGAAGTGTTTTAA
*
78760862 TGCTGTAAATTG-AGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTTAATTGAAATGTT
1 TGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTATAAATGTTGTTAATTGAAATGTT
* *
78760926 AAAGTGCCGCAAATTGAAGTGTTTGAA
66 AAAGTGCTGCAAATTGAAGTGTTTTAA
* *
78760953 TGCTGTAAATTGAAGTGCTTAAA-TGTTGCAAATTGAAGTGCTATAAATATTGTTAATTGAAATG
1 TGCTGTAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTG-TATAAATGTTGTTAATTGAAATG
*
78761017 TTTAAGTGCTGCAAATTGAAGTGTTTTAA
64 TTAAAGTGCTGCAAATTGAAGTGTTTTAA
* * * *
78761046 TGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAA
1 TGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTATAAATGTTGTTAATTGAA
78761106 GTTGTGGATT
Statistics
Matches: 295, Mismatches: 30, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
90 1 0.00
91 84 0.28
92 116 0.39
93 94 0.32
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (92 bp):
TGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTATAAATGTTGTTAATTGAAATGTT
AAAGTGCTGCAAATTGAAGTGTTTTAA
Found at i:78761118 original size:13 final size:13
Alignment explanation
Indices: 78761100--78761142 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
78761090 AATGCTGTAA
78761100 ATTGAAGTTGTGG
1 ATTGAAGTTGTGG
* **
78761113 ATTGAATGCTGTAA
1 ATTGAA-GTTGTGG
78761127 ATTGAAGTTGTGG
1 ATTGAAGTTGTGG
78761140 ATT
1 ATT
78761143 ATTACCTCTT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
13 13 0.57
14 10 0.43
ACGTcount: A:0.28, C:0.02, G:0.30, T:0.40
Consensus pattern (13 bp):
ATTGAAGTTGTGG
Found at i:78761125 original size:27 final size:27
Alignment explanation
Indices: 78761087--78761142 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
78761077 ATTGAAGTGT
78761087 TTGAATGCTGTAAATTGAAGTTGTGGA
1 TTGAATGCTGTAAATTGAAGTTGTGGA
78761114 TTGAATGCTGTAAATTGAAGTTGTGGA
1 TTGAATGCTGTAAATTGAAGTTGTGGA
78761141 TT
1 TT
78761143 ATTACCTCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.29, C:0.04, G:0.29, T:0.39
Consensus pattern (27 bp):
TTGAATGCTGTAAATTGAAGTTGTGGA
Found at i:78761132 original size:14 final size:14
Alignment explanation
Indices: 78761087--78761132 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
78761077 ATTGAAGTGT
78761087 TTGAATGCTGTAAA
1 TTGAATGCTGTAAA
* **
78761101 TTGAA-GTTGTGGA
1 TTGAATGCTGTAAA
78761114 TTGAATGCTGTAAA
1 TTGAATGCTGTAAA
78761128 TTGAA
1 TTGAA
78761133 GTTGTGGATT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (14 bp):
TTGAATGCTGTAAA
Found at i:78762773 original size:19 final size:19
Alignment explanation
Indices: 78762750--78762796 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
78762740 ATTTAATCTA
*
78762750 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
78762768 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
78762788 ATTTTTATT
1 ATTTTTATT
78762797 TTAATTTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:78763135 original size:12 final size:12
Alignment explanation
Indices: 78763120--78763144 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
78763110 TTTCAACATT
78763120 ACTATGATTATG
1 ACTATGATTATG
78763132 ACTATGATTATG
1 ACTATGATTATG
78763144 A
1 A
78763145 GTAAATCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (12 bp):
ACTATGATTATG
Found at i:78764600 original size:12 final size:12
Alignment explanation
Indices: 78764583--78764616 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
78764573 GGAGAAGTAA
78764583 GAATACATACTT
1 GAATACATACTT
78764595 GAATACATACTT
1 GAATACATACTT
*
78764607 GCATACATAC
1 GAATACATAC
78764617 ATATAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (12 bp):
GAATACATACTT
Found at i:78766220 original size:21 final size:21
Alignment explanation
Indices: 78766159--78766220 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
78766149 TTATTTTTAA
*
78766159 TCTA-TTTTTTTCTTTCATAT
1 TCTATTTTTTTTCTTTCATTT
* *
78766179 T-TATTTTTTTCCTTTCTTTT
1 TCTATTTTTTTTCTTTCATTT
*
78766199 TCTATTTTTTTTCTTTCCTTT
1 TCTATTTTTTTTCTTTCATTT
78766220 T
1 T
78766221 TCCGCTTCTC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
19 2 0.06
20 15 0.43
21 18 0.51
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (21 bp):
TCTATTTTTTTTCTTTCATTT
Found at i:78766477 original size:27 final size:27
Alignment explanation
Indices: 78766443--78766494 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
78766433 TAGGTTACAA
78766443 AAAAGAAAA-ATAAG-GAGAACGAGAGAG
1 AAAAGAAAAGA-AAGAGAGAA-GAGAGAG
78766470 AAAAGAAAAGAAAGAGAGAAGAGAG
1 AAAAGAAAAGAAAGAGAGAAGAGAG
78766495 TTTTGGTTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.65, C:0.02, G:0.31, T:0.02
Consensus pattern (27 bp):
AAAAGAAAAGAAAGAGAGAAGAGAGAG
Found at i:78768729 original size:40 final size:40
Alignment explanation
Indices: 78768684--78768832 Score: 228
Period size: 40 Copynumber: 3.7 Consensus size: 40
78768674 GCTACTTGCT
78768684 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
78768724 TAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * *
78768764 CAATTGCCTTCGGGACTTAGCCCGG-AATTGGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
78768804 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
78768833 CATCCGAATA
Statistics
Matches: 98, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 96 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:78776772 original size:40 final size:40
Alignment explanation
Indices: 78776728--78776876 Score: 228
Period size: 40 Copynumber: 3.7 Consensus size: 40
78776718 GCTACTTGCT
78776728 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
78776768 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * * *
78776808 CAATTGCCTTCGGGACTTAGCCCGG-AATTGGTCACTAGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
78776848 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
78776877 CATCCGAATA
Statistics
Matches: 99, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 97 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:78786714 original size:42 final size:42
Alignment explanation
Indices: 78786653--78786733 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
78786643 CAGCAATCTT
78786653 TTTTCAAAAATACTAGCACATAGTAGGAACTGAGGTAATATC
1 TTTTCAAAAATACTAGCACATAGTAGGAACTGAGGTAATATC
* *
78786695 TTTTCAAAACTACTGGCACATAGTAGGAACTGAGGTAAT
1 TTTTCAAAAATACTAGCACATAGTAGGAACTGAGGTAAT
78786734 GTGTTTTTGC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (42 bp):
TTTTCAAAAATACTAGCACATAGTAGGAACTGAGGTAATATC
Found at i:78789953 original size:23 final size:23
Alignment explanation
Indices: 78789906--78789953 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
78789896 CCTAGTATAA
*
78789906 AAATATGAATATTTTAATTATAT
1 AAATATGAATATTTTAATTAAAT
* **
78789929 AAATATGAGTATTTTGTTTAAAT
1 AAATATGAATATTTTAATTAAAT
78789952 AA
1 AA
78789954 CGCTTAATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (23 bp):
AAATATGAATATTTTAATTAAAT
Found at i:78792823 original size:21 final size:21
Alignment explanation
Indices: 78792797--78792836 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
78792787 GGATTCACTG
78792797 TATCTATTT-TGTTTATCTGCA
1 TATCTATTTCTG-TTATCTGCA
78792818 TATCTATTTCTGTTATCTG
1 TATCTATTTCTGTTATCTG
78792837 AATCTGTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.17, C:0.15, G:0.10, T:0.57
Consensus pattern (21 bp):
TATCTATTTCTGTTATCTGCA
Found at i:78795758 original size:16 final size:18
Alignment explanation
Indices: 78795727--78795759 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
78795717 GTTAATAGAA
78795727 TAAATTTAGATTTAATTG
1 TAAATTTAGATTTAATTG
78795745 TAAATTT-G-TTTAATT
1 TAAATTTAGATTTAATT
78795760 TTTATTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (18 bp):
TAAATTTAGATTTAATTG
Found at i:78797078 original size:18 final size:18
Alignment explanation
Indices: 78797055--78797093 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
78797045 ATATAATTGT
78797055 TCTCATTTAACTTTACAA
1 TCTCATTTAACTTTACAA
78797073 TCTCATTTAACTTTACAA
1 TCTCATTTAACTTTACAA
78797091 TCT
1 TCT
78797094 TATGCTTTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (18 bp):
TCTCATTTAACTTTACAA
Found at i:78797410 original size:16 final size:17
Alignment explanation
Indices: 78797389--78797421 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
78797379 CATATTGAAG
78797389 TGTTTT-TCGAAAACCT
1 TGTTTTATCGAAAACCT
78797405 TGTTTTCATCGAAAACC
1 TGTTTT-ATCGAAAACC
78797422 CTTCTTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.27, C:0.21, G:0.12, T:0.39
Consensus pattern (17 bp):
TGTTTTATCGAAAACCT
Found at i:78800710 original size:23 final size:24
Alignment explanation
Indices: 78800680--78800727 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
78800670 TTCAAGTCTA
78800680 AAACCAAT-TATTGTCCCTTAAAT
1 AAACCAATATATTGTCCCTTAAAT
78800703 AAACCAATCATATTGTCCCTTAAAT
1 AAACCAAT-ATATTGTCCCTTAAAT
78800728 GGACCCTCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 8 0.35
25 15 0.65
ACGTcount: A:0.40, C:0.23, G:0.04, T:0.33
Consensus pattern (24 bp):
AAACCAATATATTGTCCCTTAAAT
Found at i:78817247 original size:37 final size:37
Alignment explanation
Indices: 78817150--78817256 Score: 124
Period size: 37 Copynumber: 2.9 Consensus size: 37
78817140 CTGAAAGTAT
* * * *
78817150 GCTCAAATGAGCAATATCTAATGAATATATTGAATGT
1 GCTCAAAAGAGCAATATCTATTGAATATACTGAATGA
* * *
78817187 GCTCAAACGAGCAATATCCATTGAATATACTGATTGA
1 GCTCAAAAGAGCAATATCTATTGAATATACTGAATGA
* * *
78817224 GCTCAAAAGAGCAATGTTTATTGATTATACTGA
1 GCTCAAAAGAGCAATATCTATTGAATATACTGA
78817257 GTGTTTTCTC
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (37 bp):
GCTCAAAAGAGCAATATCTATTGAATATACTGAATGA
Found at i:78819833 original size:42 final size:44
Alignment explanation
Indices: 78819785--78819885 Score: 118
Period size: 44 Copynumber: 2.3 Consensus size: 44
78819775 TCCCAGATAG
* *
78819785 GGTCTTACAC-AAAATCA-AA-TATGATTCCAACGTCCCAGACGT
1 GGTCTTACACGAAAATCATAAGT-CGATGCCAACGTCCCAGACGT
* * *
78819827 GGTCTTACACGTAAATCATAAGTCGATGCCAACGTCCTAGAGGT
1 GGTCTTACACGAAAATCATAAGTCGATGCCAACGTCCCAGACGT
*
78819871 GGTCTTACATGAAAA
1 GGTCTTACACGAAAA
78819886 CACATATTGG
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
42 10 0.20
43 6 0.12
44 32 0.65
45 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.25
Consensus pattern (44 bp):
GGTCTTACACGAAAATCATAAGTCGATGCCAACGTCCCAGACGT
Found at i:78819843 original size:43 final size:43
Alignment explanation
Indices: 78819735--78819879 Score: 122
Period size: 43 Copynumber: 3.4 Consensus size: 43
78819725 GGCAACATCT
* *
78819735 CAGATGTGGTCTTACATGT-AATCAAATATCGATGT-C-ACTGTCC
1 CAGAAGTGGTCTTACACGTAAATCAAATAT-GAT-TCCAAC-GTCC
*
78819778 CAGATAG-GGTCTTACAC-AAAATCAAATATGATTCCAACGTCC
1 CAGA-AGTGGTCTTACACGTAAATCAAATATGATTCCAACGTCC
* * *
78819820 CAGACGTGGTCTTACACGTAAATCATAAGT-CGATGCCAACGTCC
1 CAGAAGTGGTCTTACACGTAAATCA-AA-TATGATTCCAACGTCC
* *
78819864 TAGAGGTGGTCTTACA
1 CAGAAGTGGTCTTACA
78819880 TGAAAACACA
Statistics
Matches: 85, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
41 2 0.02
42 22 0.26
43 31 0.36
44 29 0.34
45 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (43 bp):
CAGAAGTGGTCTTACACGTAAATCAAATATGATTCCAACGTCC
Found at i:78828272 original size:27 final size:27
Alignment explanation
Indices: 78828242--78828418 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 27
78828232 AAATTGTACA
* *
78828242 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
* ** *
78828269 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * *
78828296 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
* *
78828323 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
78828351 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * * *
78828378 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTG
*
78828405 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
78828419 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:78828355 original size:82 final size:81
Alignment explanation
Indices: 78828242--78828397 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
78828232 AAATTGTACA
* * * *
78828242 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
78828306 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
78828323 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGGGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
78828388 TGCGAGTTGA
65 TGCGAATTGA
78828398 TTATATAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.77
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:78828409 original size:82 final size:81
Alignment explanation
Indices: 78828238--78828418 Score: 202
Period size: 82 Copynumber: 2.2 Consensus size: 81
78828228 GATTAAATTG
* * * * *
78828238 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
78828303 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
78828319 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
78828383 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
78828401 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
78828419 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
81 17 0.21
82 64 0.79
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:78836249 original size:26 final size:27
Alignment explanation
Indices: 78836220--78836393 Score: 165
Period size: 27 Copynumber: 6.5 Consensus size: 27
78836210 AAATTGTACA
78836220 GCACTAAG-GTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTT
** * *
78836246 GCACT-AGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTT
* * **
78836272 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTT
* *
78836299 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTT
* *
78836327 GCACTAAGTGTGCGATTTGATTACG-T
1 GCACTAAGTGTGCGATTTGACTATGTT
* * * *
78836353 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTT
*
78836380 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
78836394 GGCTCAATTA
Statistics
Matches: 121, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
25 2 0.02
26 46 0.38
27 51 0.42
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTT
Found at i:78836302 original size:27 final size:27
Alignment explanation
Indices: 78836220--78836372 Score: 134
Period size: 26 Copynumber: 5.7 Consensus size: 27
78836210 AAATTGTACA
* **
78836220 GCACTAAG-GTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGCG
* * **
78836246 GCACT-AGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGCG
*
78836272 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGCG
* **
78836299 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGCG
* *
78836327 GCACTAAGTGTGCGATTTGA-T-TACG
1 GCACTAAGTGTGCGAATTGACTATGCG
*
78836352 TGCACTAAGTGTGCGAGTTGA
1 -GCACTAAGTGTGCGAATTGA
78836373 TTATATAGCA
Statistics
Matches: 105, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
25 3 0.03
26 44 0.42
27 35 0.33
28 23 0.22
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGCG
Found at i:78836331 original size:81 final size:79
Alignment explanation
Indices: 78836220--78836372 Score: 209
Period size: 81 Copynumber: 1.9 Consensus size: 79
78836210 AAATTGTACA
* * *
78836220 GCACTAAGGTGCGATTTGACTATGTTGCACT-AGTGTGCGAAATGAATATGATGCACTAAGTGTG
1 GCACTAAGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGCACTAAGTGTG
78836284 CGAATTGACCATGCG
65 CGAATTGACCATGCG
** *
78836299 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGCACTAAGTGT
1 GCACTAAG-GTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGCACTAAGTGT
*
78836364 GCGAGTTGA
64 GCGAATTGA
78836373 TTATATAGCA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
79 8 0.12
80 6 0.09
81 35 0.55
82 15 0.23
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (79 bp):
GCACTAAGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGCACTAAGTGTGC
GAATTGACCATGCG
Found at i:78836384 original size:81 final size:80
Alignment explanation
Indices: 78836216--78836393 Score: 207
Period size: 81 Copynumber: 2.2 Consensus size: 80
78836206 GATTAAATTG
* * *
78836216 TACAGCACTAAG-GTGCGATTTGACTATGTTGCACTAGTGTGCGAAATGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAGTGTGCGAAATGAATACGATGCACTAAG
78836280 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * ** *
78836295 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGCACTA
1 TACAGCACTAAGTGTGCGA-TCTGACTATGTAGCACT-AGTGTGCGAAATGAATACGATGCACTA
* **
78836359 AGTGTGCGAGTTGATTA
64 AGTGTGCGAATTGACCA
* *
78836376 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
78836394 GGCTCAATTA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
79 10 0.12
80 6 0.07
81 50 0.62
82 15 0.19
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAGTGTGCGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCA
Found at i:78836404 original size:54 final size:54
Alignment explanation
Indices: 78836299--78836404 Score: 133
Period size: 54 Copynumber: 2.0 Consensus size: 54
78836289 TGACCATGCG
* * **
78836299 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGT
1 GCACTAAGTGTGCGAGTCTGACTATATAGCACTAAGTGTGCGACTCAATTACGT
* * *
78836353 GCACTAAGTGTGCGAGT-TGATTATATAGCACTGAGTGTGCGGGCTCAATTAC
1 GCACTAAGTGTGCGAGTCTGACTATATAGCACTAAGTGTGC-GACTCAATTAC
78836405 ATTCGTGAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
53 20 0.45
54 24 0.55
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTCTGACTATATAGCACTAAGTGTGCGACTCAATTACGT
Found at i:78839231 original size:40 final size:40
Alignment explanation
Indices: 78839176--78839322 Score: 233
Period size: 40 Copynumber: 3.7 Consensus size: 40
78839166 ATTTGAATGA
*
78839176 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
78839216 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
78839256 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
78839296 TATCCGGGCTAAGACCCGAAGGCATTT
1 TATCCGGGCTAAGACCCGAAGGCATTT
78839323 GTACGAGTTG
Statistics
Matches: 102, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
40 99 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:78839323 original size:40 final size:40
Alignment explanation
Indices: 78839175--78839364 Score: 224
Period size: 40 Copynumber: 4.8 Consensus size: 40
78839165 CATTTGAATG
* * *
78839175 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * *
78839215 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
78839255 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* *
78839295 ATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGT--TG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * *
78839333 CTACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
78839365 TGGTTATATC
Statistics
Matches: 136, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
38 27 0.20
39 1 0.01
40 105 0.77
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:78862165 original size:43 final size:43
Alignment explanation
Indices: 78862102--78862183 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
78862092 ATGTAACACG
*
78862102 TCCATAATGAACTCAGACCTCTCAACGAGCTCGGATGCTCTCA
1 TCCATAATGAACTCAGACCTCTCAACGAGCTCGAATGCTCTCA
78862145 TCCATAATGAACTC-GAACCTCTCAACGAGCTCGAATGCT
1 TCCATAATGAACTCAG-ACCTCTCAACGAGCTCGAATGCT
78862184 ACATATCTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
42 1 0.03
43 36 0.97
ACGTcount: A:0.29, C:0.32, G:0.16, T:0.23
Consensus pattern (43 bp):
TCCATAATGAACTCAGACCTCTCAACGAGCTCGAATGCTCTCA
Found at i:78864724 original size:49 final size:49
Alignment explanation
Indices: 78864652--78864749 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
78864642 TTGGTGTTCA
78864652 GCCTTTACTTATTGGCAAATCAAGCATCTCGATACAAATTTGGATATAT
1 GCCTTTACTTATTGGCAAATCAAGCATCTCGATACAAATTTGGATATAT
*
78864701 GCCTTTACTTGTTGGCAAATCAAGCATCTCGATACAAATTTGGATATAT
1 GCCTTTACTTATTGGCAAATCAAGCATCTCGATACAAATTTGGATATAT
78864750 CTCTTTTCAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (49 bp):
GCCTTTACTTATTGGCAAATCAAGCATCTCGATACAAATTTGGATATAT
Found at i:78870422 original size:29 final size:29
Alignment explanation
Indices: 78870347--78870461 Score: 92
Period size: 29 Copynumber: 4.0 Consensus size: 29
78870337 TACATACATG
* * *
78870347 CATATAGCCCACTAGGCCCAATT-TTATT
1 CATATGGCCCACTACGCCCAATTCATATT
* * * *
78870375 CAAATGGTCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCA-CTACGCCCAATTCATATT
*
78870404 CTTATGGCCCACTACGCCCAATTCACT-TT
1 CATATGGCCCACTACGCCCAATTCA-TATT
* * *
78870433 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCACTACGCCCAATTCATATT
78870462 ATACTCATGC
Statistics
Matches: 68, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
28 19 0.28
29 48 0.71
30 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.30
Consensus pattern (29 bp):
CATATGGCCCACTACGCCCAATTCATATT
Found at i:78870557 original size:18 final size:19
Alignment explanation
Indices: 78870534--78870570 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
78870524 TGGGCCCAAC
78870534 AGCCCAT-CAGGCCCATTT
1 AGCCCATACAGGCCCATTT
*
78870552 AGCCCATACCGGCCCATTT
1 AGCCCATACAGGCCCATTT
78870571 GGCCAATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.22, C:0.41, G:0.16, T:0.22
Consensus pattern (19 bp):
AGCCCATACAGGCCCATTT
Found at i:78872024 original size:43 final size:43
Alignment explanation
Indices: 78871963--78872082 Score: 188
Period size: 43 Copynumber: 2.8 Consensus size: 43
78871953 ACATGAATCA
* *
78871963 CATCCATTATGAACTCGGACCTCTTATCGAGCTCGGGTGCTCG
1 CATCCATAATGAACTCGGACCTCTCATCGAGCTCGGGTGCTCG
78872006 CATCCATAATGAACTCGGACCTCTCGAT-GAGCTCGGGTGCTCG
1 CATCCATAATGAACTCGGACCTCTC-ATCGAGCTCGGGTGCTCG
* *
78872049 CATCCATAATGAACTCGAACCTCTCAACGAGCTC
1 CATCCATAATGAACTCGGACCTCTCATCGAGCTC
78872083 AGATGCTACA
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
42 1 0.01
43 68 0.96
44 2 0.03
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (43 bp):
CATCCATAATGAACTCGGACCTCTCATCGAGCTCGGGTGCTCG
Found at i:78879527 original size:24 final size:24
Alignment explanation
Indices: 78879500--78879548 Score: 57
Period size: 24 Copynumber: 2.0 Consensus size: 24
78879490 CTCTTACATA
78879500 TAATAATTATC-CTAT-TATAATTAT
1 TAATAA-TATCACTATATAT-ATTAT
*
78879524 TAATGATATCACTATATATATTAT
1 TAATAATATCACTATATATATTAT
78879548 T
1 T
78879549 CTCATACTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
23 4 0.18
24 15 0.68
25 3 0.14
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.49
Consensus pattern (24 bp):
TAATAATATCACTATATATATTAT
Found at i:78890024 original size:46 final size:45
Alignment explanation
Indices: 78889971--78890146 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
78889961 TATTTGGGCA
78889971 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
78890017 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
78890064 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
78890110 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78890147 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:78890126 original size:93 final size:93
Alignment explanation
Indices: 78889967--78890138 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
78889957 AGGATATTTG
* *
78889967 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
78890032 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
78890060 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
78890125 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
78890139 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:78893064 original size:21 final size:21
Alignment explanation
Indices: 78893022--78893075 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
78893012 AAACTACTAC
*
78893022 TAAACATATACAAATTCATAAA
1 TAAA-ATATACAAAATCATAAA
78893044 TAAAATATACAACAATC-TAAA
1 TAAAATATACAA-AATCATAAA
*
78893065 TACAATCATAC
1 TAAAAT-ATAC
78893076 CATATGAACT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 17 0.61
22 11 0.39
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.26
Consensus pattern (21 bp):
TAAAATATACAAAATCATAAA
Found at i:78897810 original size:16 final size:17
Alignment explanation
Indices: 78897789--78897820 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
78897779 GAATTTACTT
78897789 ATTATATA-AGTAAATA
1 ATTATATACAGTAAATA
78897805 ATTATATACAGTAAAT
1 ATTATATACAGTAAAT
78897821 TATATTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.38
Consensus pattern (17 bp):
ATTATATACAGTAAATA
Found at i:78901910 original size:6 final size:6
Alignment explanation
Indices: 78901899--78901932 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
78901889 CATTTCTTAT
*
78901899 TTTTCA TTTTCA TTTTCA TTTTCA TTTCCA TTTT
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTT
78901933 GGAGAAAGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTTCA
Found at i:78912587 original size:26 final size:26
Alignment explanation
Indices: 78912532--78912587 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
78912522 CAACCTTAAC
* * *
78912532 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGCGGTAAATCAGTAATTTTACA
*
78912558 CCTAGCGGTAAATCTGTAATTTGT-CA
1 CCTAGCGGTAAATCAGTAATTT-TACA
78912584 CCTA
1 CCTA
78912588 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.36
Consensus pattern (26 bp):
CCTAGCGGTAAATCAGTAATTTTACA
Found at i:78924516 original size:93 final size:93
Alignment explanation
Indices: 78924388--78924559 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
78924378 GCCCATAAGT
* * *
78924388 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
78924453 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
78924481 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
78924546 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
78924560 CAAACATCCA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:78924555 original size:46 final size:46
Alignment explanation
Indices: 78924380--78924555 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
78924370 TGTAACCCGC
* * *
78924380 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
78924426 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
78924472 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
78924519 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
78924556 TGCCCAAACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:78930023 original size:93 final size:93
Alignment explanation
Indices: 78929914--78930085 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
78929904 GCCCATAAGT
* * * *
78929914 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
78929979 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
78930007 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
78930072 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
78930086 CAAACATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:78930081 original size:46 final size:46
Alignment explanation
Indices: 78929906--78930081 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
78929896 TGTAACCCGC
* * *
78929906 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
78929952 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
78929998 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
78930045 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
78930082 TGCCCAAACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.63
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:78930100 original size:46 final size:46
Alignment explanation
Indices: 78929957--78930100 Score: 134
Period size: 46 Copynumber: 3.1 Consensus size: 46
78929947 CGCATCCATA
* *
78929957 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * * *
78930006 --CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
*
78930050 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
78930096 AGTGA
1 AGTGA
78930101 CATGTCACTT
Statistics
Matches: 74, Mismatches: 15, Indels: 15
0.71 0.14 0.14
Matches are distributed among these distances:
44 8 0.11
46 32 0.43
47 30 0.41
49 4 0.05
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:78949225 original size:40 final size:40
Alignment explanation
Indices: 78949193--78949424 Score: 347
Period size: 40 Copynumber: 5.8 Consensus size: 40
78949183 CCAGCATGAT
* * * *
78949193 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** * *
78949233 TGCTCTTTGGGGTTTAGCACAGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
78949273 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
78949313 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
78949353 TGCTCTTCGGGACTTAGCCCGGATTTATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
78949393 TGCTCTTTGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
78949425 CTCAATTCTC
Statistics
Matches: 173, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 173 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:78950701 original size:37 final size:37
Alignment explanation
Indices: 78950640--78950718 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
78950630 TTATTACGAA
* * * * *
78950640 GTCTTACTCGGCCATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
78950677 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
78950714 GTCTT
1 GTCTT
78950719 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:78950908 original size:47 final size:47
Alignment explanation
Indices: 78950837--78951139 Score: 462
Period size: 47 Copynumber: 6.4 Consensus size: 47
78950827 CCCTTCGGGA
* * * * * * *
78950837 CTTATCACATTTATACACTTTCACATCCATCACGTTGTCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
78950884 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78950931 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
78950978 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78951027 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78951074 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78951121 CTTATCACATATATACACT
1 CTTATCACATATATACACT
78951140 CACATCACAA
Statistics
Matches: 237, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
47 193 0.81
49 44 0.19
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78950915 original size:25 final size:25
Alignment explanation
Indices: 78950887--78950965 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
78950877 ACTCGGCCCT
78950887 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
78950912 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
78950934 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
78950959 ATCACAT
1 ATCACAT
78950966 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:78951106 original size:143 final size:143
Alignment explanation
Indices: 78950837--78951135 Score: 503
Period size: 143 Copynumber: 2.1 Consensus size: 143
78950827 CCCTTCGGGA
* *
78950837 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGTCCACTCGGCCCTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATAC
* *
78950900 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
78950965 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* * * *
78950978 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGTCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATAC
*
78951043 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
78951108 TCGGCCATTAGGC
131 TCGGCCATTAGGC
78951121 CTTATCACATATATA
1 CTTATCACATATATA
78951136 CACTCACATC
Statistics
Matches: 147, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
141 10 0.07
142 1 0.01
143 136 0.93
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:78957352 original size:35 final size:35
Alignment explanation
Indices: 78957306--78957376 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
78957296 TCTAAACATA
78957306 CAATATCATGTTTCCATCCATTTGGTTAAATTTGC
1 CAATATCATGTTTCCATCCATTTGGTTAAATTTGC
*
78957341 CAATATTATGTTTCCATCCATTTGGTTAAATTTGC
1 CAATATCATGTTTCCATCCATTTGGTTAAATTTGC
78957376 C
1 C
78957377 TAAGCACGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.25, C:0.20, G:0.11, T:0.44
Consensus pattern (35 bp):
CAATATCATGTTTCCATCCATTTGGTTAAATTTGC
Found at i:78957488 original size:38 final size:38
Alignment explanation
Indices: 78957437--78957510 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
78957427 ATCAAGTAAC
78957437 ATAGATGAGCCCATCAAGCAATATTCTATCTAGTCATT
1 ATAGATGAGCCCATCAAGCAATATTCTATCTAGTCATT
78957475 ATAGATGAGCCCATCAAGCAATATTCTATCTAGTCA
1 ATAGATGAGCCCATCAAGCAATATTCTATCTAGTCA
78957511 CTACTATTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.30
Consensus pattern (38 bp):
ATAGATGAGCCCATCAAGCAATATTCTATCTAGTCATT
Found at i:78961200 original size:5 final size:5
Alignment explanation
Indices: 78961190--78961217 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
78961180 TGAAAAATGA
78961190 GAGAG GAGAG GAGAG GAGAG GAGAG GAG
1 GAGAG GAGAG GAGAG GAGAG GAGAG GAG
78961218 CAGCTAGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (5 bp):
GAGAG
Found at i:78963536 original size:80 final size:79
Alignment explanation
Indices: 78963404--78963620 Score: 285
Period size: 80 Copynumber: 2.7 Consensus size: 79
78963394 ACCCAAGTAT
* * * * * *
78963404 CTTCGGGATTTAG-CCAGATATCGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAAATAGCACAAATGCCTTC-GGACTTAGCCCGGATATAGT
78963468 CACTAGCATAAATGC
65 CACTAGCATAAATGC
* *
78963483 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGAGACTTAGCCCGGGTATAG
1 CTTCGGGACTTAGCCCGGATATAG-CAAATAGCACAAATGCCTTCG-GACTTAGCCCGGATATAG
78963547 TCACTAGCATAAATGC
64 TCACTAGCATAAATGC
** *
78963563 CTTCGGGACTTAGCCCGGATATAGCAAATCTCACAAATGCCTTCGGATCTTAGTCCGG
1 CTTCGGGACTTAGCCCGGATATAGCAAATAGCACAAATGCCTTCGGA-CTTAGCCCGG
78963621 TTATCATCTG
Statistics
Matches: 123, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
79 16 0.13
80 106 0.86
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGCAAATAGCACAAATGCCTTCGGACTTAGCCCGGATATAGTC
ACTAGCATAAATGC
Found at i:78963615 original size:40 final size:40
Alignment explanation
Indices: 78963433--78963608 Score: 264
Period size: 40 Copynumber: 4.4 Consensus size: 40
78963423 ATCGCAACTC
*
78963433 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
*
78963473 GCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
* *
78963513 GCACAAATGCCTTCGAGACTTAGCCCGGGTATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
* * *
78963553 GCATAAATGCCTTCGGGACTTAGCCCGGATATAG-CAAATC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC-ACTA
*
78963593 TCACAAATGCCTTCGG
1 GCACAAATGCCTTCGG
78963609 ATCTTAGTCC
Statistics
Matches: 123, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 1 0.01
40 122 0.99
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
Found at i:78971523 original size:40 final size:40
Alignment explanation
Indices: 78971446--78971658 Score: 274
Period size: 40 Copynumber: 5.4 Consensus size: 40
78971436 ACCCAAGTAT
* * *
78971446 CTTCGGGATTTAG-CCGGATATCG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
78971485 CTTCGGGTCTTAGCCCGGATATAGTCACTTGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
78971525 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
78971565 CTTCGGGACTTAGCCCGGGTATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
78971605 CTTCGGGACTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
78971644 CTTC-GGATCTTAGCC
1 CTTCGGGA-CTTAGCC
78971659 GGTTATCATC
Statistics
Matches: 154, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
38 4 0.03
39 41 0.27
40 108 0.70
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:78971562 original size:80 final size:79
Alignment explanation
Indices: 78971446--78971658 Score: 320
Period size: 80 Copynumber: 2.7 Consensus size: 79
78971436 ACCCAAGTAT
* * *
78971446 CTTCGGGATTTAGCCGGATATCGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC
1 CTTCGGGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC
*
78971511 ACTTGCATAAATGC
66 ACTAGCATAAATGC
* * *
78971525 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CTTCGGGACTTAG-CCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
78971589 TCACTAGCATAAATGC
64 TCACTAGCATAAATGC
* *
78971605 CTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGCC
1 CTTCGGGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCC
78971659 GGTTATCATC
Statistics
Matches: 120, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 47 0.39
80 71 0.59
81 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC
ACTAGCATAAATGC
Found at i:78973935 original size:46 final size:46
Alignment explanation
Indices: 78973766--78973941 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
78973756 TGTAACCCGC
* * * ***
78973766 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGTGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
78973812 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGTATTCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
78973862 CTCA-CA---AACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
78973905 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
78973942 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 8 0.08
44 1 0.01
46 59 0.56
47 27 0.25
50 7 0.07
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:78976512 original size:27 final size:27
Alignment explanation
Indices: 78976482--78976657 Score: 158
Period size: 27 Copynumber: 6.5 Consensus size: 27
78976472 AAATTGTACA
* *
78976482 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
** *
78976509 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * *
78976536 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
* *
78976563 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* * *
78976591 GCACTAAGTGTGCGATTCGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * * *
78976618 GCACTAAG-GTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTG
*
78976644 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
78976658 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
26 20 0.17
27 78 0.64
28 23 0.19
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:78976542 original size:54 final size:55
Alignment explanation
Indices: 78976481--78976657 Score: 182
Period size: 54 Copynumber: 3.3 Consensus size: 55
78976471 TAAATTGTAC
* *
78976481 AGCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGA-AATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGAATGAATATGT
* * * ** *
78976534 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTGACTATGT
1 A-GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGAATGAATATGT
* * * * * *
78976590 AGCACTAAGTGTGCGATTCGATTACGTGGCACTAAG-GTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGAATGAATATGT
*
78976643 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78976658 GGCTCAATAT
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
53 22 0.21
54 44 0.43
55 36 0.35
56 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGAATGAATATGT
Found at i:78976622 original size:82 final size:80
Alignment explanation
Indices: 78976482--78976636 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 80
78976472 AAATTGTACA
* * *
78976482 GCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG-GT
78976547 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
* * *
78976563 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCG-ATTCGATTACG-TGGCACTAAG
1 GCACTAAGGGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAAT-GAATACGAT-GCACTAAG
*
78976626 GTGCGAGTTGA
63 GTGCGAATTGA
78976637 TTATATAGCA
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
81 27 0.42
82 37 0.58
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (80 bp):
GCACTAAGGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGGTG
CGAATTGACCATGCG
Found at i:78984544 original size:27 final size:27
Alignment explanation
Indices: 78984460--78984636 Score: 140
Period size: 27 Copynumber: 6.5 Consensus size: 27
78984450 AAATTGTACA
* * * *
78984460 GCACTAAGGGTGAGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
78984487 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
78984514 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * * *
78984541 GCACAAAGTGTGCGAGTCTGACTAAGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
78984569 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * * *
78984596 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTG
*
78984623 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
78984637 GGCTCAATAT
Statistics
Matches: 120, Mismatches: 27, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
27 98 0.82
28 22 0.18
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:78984582 original size:55 final size:54
Alignment explanation
Indices: 78984514--78984636 Score: 149
Period size: 55 Copynumber: 2.3 Consensus size: 54
78984504 TGAATATGAT
*
78984514 GCACTAAGTGTGCGAATTGACCATGCGGCACAAAGTGTGCGAGTCTGACTA-AGTA
1 GCACTAAGTGTGCGAATTGACCACGCGGCACAAAGTGTGCGAGT-TGACTATA-TA
* ** * * *
78984569 GCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACCACGCGGCACAAAGTGTGCGAGTTGACTATATA
*
78984623 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
78984637 GGCTCAATAT
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
54 20 0.34
55 39 0.66
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (54 bp):
GCACTAAGTGTGCGAATTGACCACGCGGCACAAAGTGTGCGAGTTGACTATATA
Found at i:78986471 original size:44 final size:42
Alignment explanation
Indices: 78986366--78986471 Score: 108
Period size: 44 Copynumber: 2.5 Consensus size: 42
78986356 AATACCACTA
* *
78986366 TCCCAGATAG-GGACTTACACGAAATCAAATACGATGCAAATG
1 TCCCAGAT-GTGGTCTTACACGAAATCAAATACGATGCAAACG
** * *
78986408 TCCCAGACATGGTCCTACACGTAAATCATAAGT-CGATGCCAACG
1 TCCCAGATGTGGTCTTACACG-AAATCA-AA-TACGATGCAAACG
78986452 TCCCAGATGTGGTCTTACAC
1 TCCCAGATGTGGTCTTACAC
78986472 AAAAACACAT
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
42 16 0.31
43 6 0.12
44 28 0.55
45 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (42 bp):
TCCCAGATGTGGTCTTACACGAAATCAAATACGATGCAAACG
Found at i:78987299 original size:16 final size:16
Alignment explanation
Indices: 78987278--78987315 Score: 67
Period size: 16 Copynumber: 2.3 Consensus size: 16
78987268 TTTCTTTTAT
78987278 TTGATATAATCGGCCA
1 TTGATATAATCGGCCA
78987294 TTGATATAATCGGCCA
1 TTGATATAATCGGCCA
78987310 TATGAT
1 T-TGAT
78987316 GGATAATGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (16 bp):
TTGATATAATCGGCCA
Found at i:78990314 original size:47 final size:47
Alignment explanation
Indices: 78990243--78990641 Score: 683
Period size: 47 Copynumber: 8.4 Consensus size: 47
78990233 TATCACAGTT
* * * * *
78990243 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTATCATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATAC
*
78990290 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
78990337 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
*
78990384 ATACACTTTCACATTCTTCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
78990433 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
78990480 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
78990527 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
78990574 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
78990623 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
78990642 GTAACAAAAT
Statistics
Matches: 338, Mismatches: 9, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 267 0.79
48 2 0.01
49 69 0.20
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.33
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
Found at i:78990487 original size:143 final size:143
Alignment explanation
Indices: 78990243--78990641 Score: 682
Period size: 143 Copynumber: 2.8 Consensus size: 143
78990233 TATCACAGTT
* * * * *
78990243 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTAT--CATATATATATACTTTCACATT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATT
78990305 CATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCG
65 CATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCG
78990370 GCCTTATCACATAC
130 GCCTTATCACATAC
*
78990384 ATACACTTTCACATTCTTCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
78990449 ATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGG
66 ATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGG
78990514 CCTTATCACATAC
131 CCTTATCACATAC
78990527 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
78990590 ATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTCATC
66 ATCACATTGGCCATTCGGCCTTATCAC--ATACATACACTTTCACATTCATC
78990642 GTAACAAAAT
Statistics
Matches: 246, Mismatches: 7, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
141 80 0.33
142 2 0.01
143 164 0.67
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.33
Consensus pattern (143 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
ATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGG
CCTTATCACATAC
Found at i:78990566 original size:190 final size:190
Alignment explanation
Indices: 78990243--78990641 Score: 719
Period size: 190 Copynumber: 2.1 Consensus size: 190
78990233 TATCACAGTT
* * * * *
78990243 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTATCATATATATATACTTTCACATTCA
1 ATACACTTTCACATT-CATCACATTGACCATTCGGCCTTATCACATACATACACTTTCACATTCA
78990307 TCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGC
65 TCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGC
*
78990372 CTTATCACATACATACACTTTCACATTCTTCACATTGGCCATTCGGCCTTATCACATATAC
130 CTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
*
78990433 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATTGACCATTCGGCCTTATCACATACATACACTTTCACATTCAT
78990498 CACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCC
66 CACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCC
78990563 TTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
131 TTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
78990623 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
78990642 GTAACAAAAT
Statistics
Matches: 201, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
190 199 0.99
191 2 0.01
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.33
Consensus pattern (190 bp):
ATACACTTTCACATTCATCACATTGACCATTCGGCCTTATCACATACATACACTTTCACATTCAT
CACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCC
TTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
Found at i:79000498 original size:21 final size:21
Alignment explanation
Indices: 79000472--79000516 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
79000462 AATTTTATGG
*
79000472 AGAAAAATAA-ATAATAAAAGA
1 AGAAAAATAAGA-AAGAAAAGA
79000493 AGAAAAATAAGAAAGAAAAGA
1 AGAAAAATAAGAAAGAAAAGA
79000514 AGA
1 AGA
79000517 CGACCTAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.09
Consensus pattern (21 bp):
AGAAAAATAAGAAAGAAAAGA
Found at i:79012996 original size:56 final size:56
Alignment explanation
Indices: 79012896--79013060 Score: 242
Period size: 56 Copynumber: 2.9 Consensus size: 56
79012886 TGTATGCTTT
* * * *
79012896 GATGATCATACAGAGCTACAGTAGTCCACAACATATGCGGAATACTACCAATCCTA
1 GATGCTCACACAGAGCTACGGTAGTCCACAACATATGCGAAATACTACCAATCCTA
* *
79012952 GATGCTCACACAGAGCTACGGTAGTCCATAACATATGCGAAATACTACCAATCCTC
1 GATGCTCACACAGAGCTACGGTAGTCCACAACATATGCGAAATACTACCAATCCTA
* *
79013008 GATGCTCACACAGAGCTACGATAGTCCACAACTTATGC-AGAATACTACCAATC
1 GATGCTCACACAGAGCTACGGTAGTCCACAACATATGCGA-AATACTACCAATC
79013061 ACTATACTCA
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
55 1 0.01
56 98 0.99
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.21
Consensus pattern (56 bp):
GATGCTCACACAGAGCTACGGTAGTCCACAACATATGCGAAATACTACCAATCCTA
Found at i:79013948 original size:16 final size:16
Alignment explanation
Indices: 79013927--79013957 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
79013917 TTCCCTTTCC
79013927 TTTTTCTTTCTTTCTG
1 TTTTTCTTTCTTTCTG
79013943 TTTTTCTTTCTTTCT
1 TTTTTCTTTCTTTCT
79013958 TTCCCCTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTTTCTTTCTTTCTG
Found at i:79014035 original size:18 final size:18
Alignment explanation
Indices: 79014012--79014168 Score: 119
Period size: 20 Copynumber: 8.7 Consensus size: 18
79014002 TGCTTTGTTT
79014012 TATATT-TAATGATAAAAA
1 TATATTATAAT-ATAAAAA
*
79014030 TATATTATAATATAATAA
1 TATATTATAATATAAAAA
*
79014048 TATA--ATAATATAATAA
1 TATATTATAATATAAAAA
*
79014064 TATAATATAATAT---AA
1 TATATTATAATATAAAAA
*
79014079 TATAATATAATATAATATAA
1 TATATTATAATATAA-A-AA
*
79014099 TATAATATAATATAATATAA
1 TATATTATAATATAA-A-AA
*
79014119 TATAATATAATATAATATAA
1 TATATTATAATATAA-A-AA
* * * *
79014139 TATAATATAATATTATAT
1 TATATTATAATATAAAAA
79014157 TATATTATAATA
1 TATATTATAATA
79014169 ATATTATTCT
Statistics
Matches: 126, Mismatches: 5, Indels: 16
0.86 0.03 0.11
Matches are distributed among these distances:
15 15 0.12
16 16 0.13
18 35 0.28
19 4 0.03
20 56 0.44
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (18 bp):
TATATTATAATATAAAAA
Found at i:79014043 original size:5 final size:5
Alignment explanation
Indices: 79014028--79014172 Score: 206
Period size: 5 Copynumber: 29.0 Consensus size: 5
79014018 TAATGATAAA
*
79014028 AATAT ATTAT AATAT -A-AT AATAT AATA- ATATAAT AATAT AATAT AATAT
1 AATAT AATAT AATAT AATAT AATAT AATAT A-AT-AT AATAT AATAT AATAT
79014077 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT
* * *
79014127 AATAT AATAT AATAT AATAT AATAT TATAT TATAT TATAAT AATAT
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AAT-AT AATAT
79014173 TATTCTTTAT
Statistics
Matches: 130, Mismatches: 4, Indels: 12
0.89 0.03 0.08
Matches are distributed among these distances:
3 2 0.02
4 3 0.02
5 117 0.90
6 7 0.05
7 1 0.01
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
AATAT
Found at i:79014707 original size:6 final size:6
Alignment explanation
Indices: 79014693--79014726 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
79014683 TAGGTACAGT
* *
79014693 TTCAGA TTCAAA TTCAGA TCCAGA TTCAGA TTCA
1 TTCAGA TTCAGA TTCAGA TTCAGA TTCAGA TTCA
79014727 AATTACAGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (6 bp):
TTCAGA
Found at i:79014708 original size:12 final size:12
Alignment explanation
Indices: 79014693--79014735 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
79014683 TAGGTACAGT
79014693 TTCAGATTCAAA
1 TTCAGATTCAAA
* *
79014705 TTCAGATCCAGA
1 TTCAGATTCAAA
79014717 TTCAGATTCAAA
1 TTCAGATTCAAA
79014729 TTACAGA
1 TT-CAGA
79014736 AGTAGATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
12 22 0.85
13 4 0.15
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.30
Consensus pattern (12 bp):
TTCAGATTCAAA
Found at i:79017187 original size:30 final size:29
Alignment explanation
Indices: 79017153--79017220 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 29
79017143 ATGAATCGGA
*
79017153 AGCTTTGGCACTAAGTGTGTGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTT-AACT
79017183 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAACT
79017212 AGCTTTGGC
1 AGCTTTGGC
79017221 TACTTGAGGC
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 13 0.35
30 24 0.65
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCGATTTAACT
Found at i:79023601 original size:16 final size:16
Alignment explanation
Indices: 79023580--79023610 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
79023570 TTTAATACCT
79023580 TTAGCTACTAGAACTA
1 TTAGCTACTAGAACTA
79023596 TTAGCTACTAGAACT
1 TTAGCTACTAGAACT
79023611 CAACTTTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (16 bp):
TTAGCTACTAGAACTA
Found at i:79028953 original size:40 final size:42
Alignment explanation
Indices: 79028909--79028986 Score: 106
Period size: 41 Copynumber: 1.9 Consensus size: 42
79028899 AGACAAGTGC
** *
79028909 TAGTGTAAGA-CATATTTGGGACAT-GCATCGAGATGATAGT
1 TAGTGTAAGACCATATCAGGGACATGGCATCGACATGATAGT
*
79028949 TAGTGTAAGACCATGTCAGGGACATGGCATCGACATGA
1 TAGTGTAAGACCATATCAGGGACATGGCATCGACATGA
79028987 GATATGAGCT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 10 0.31
41 11 0.34
42 11 0.34
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (42 bp):
TAGTGTAAGACCATATCAGGGACATGGCATCGACATGATAGT
Found at i:79029019 original size:88 final size:88
Alignment explanation
Indices: 79028861--79029022 Score: 218
Period size: 88 Copynumber: 1.8 Consensus size: 88
79028851 TTATGAGAGC
* * * *
79028861 TAGTATAAGACCATGTCTGGGACATGGCATCGGCATCGAGACAAGTGCTAGTGTAAGACATATTT
1 TAGTATAAGACCATGTCAGGGACATGGCATCGACATCGAGACAAGAGCTAGTGTAAGACATATCT
*
79028926 GGGACATGCATCGAGATGATAGT
66 AGGACATGCATCGAGATGATAGT
* * * * *
79028949 TAGTGTAAGACCATGTCAGGGACATGGCATCGACAT-GAGATATGAGCTAGTGTAAGACCGTGTC
1 TAGTATAAGACCATGTCAGGGACATGGCATCGACATCGAGACAAGAGCTAGTGTAAGA-CATATC
79029013 TAGGACATGC
65 TAGGACATGC
79029023 CATCAGAACC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
87 18 0.29
88 45 0.71
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (88 bp):
TAGTATAAGACCATGTCAGGGACATGGCATCGACATCGAGACAAGAGCTAGTGTAAGACATATCT
AGGACATGCATCGAGATGATAGT
Found at i:79037021 original size:13 final size:13
Alignment explanation
Indices: 79036981--79037021 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
79036971 GCTTGGCAGG
*
79036981 GACACGCCCGTGT
1 GACATGCCCGTGT
*
79036994 GACATGCTCGTGT
1 GACATGCCCGTGT
*
79037007 GACATGCCCGAGT
1 GACATGCCCGTGT
79037020 GA
1 GA
79037022 ATCGTGCTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.20
Consensus pattern (13 bp):
GACATGCCCGTGT
Found at i:79050503 original size:30 final size:30
Alignment explanation
Indices: 79050445--79050503 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
79050435 ATTTTCACGC
* **
79050445 CTAGGGGTAAAATGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCATTTTACCAAAGT
79050475 CTAGGGGCAAAATGGTCATTTTACCAAAG
1 CTAGGGGCAAAATGGTCATTTTACCAAAG
79050504 ATGTGAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTACCAAAGT
Found at i:79050948 original size:46 final size:47
Alignment explanation
Indices: 79050804--79051014 Score: 198
Period size: 46 Copynumber: 4.5 Consensus size: 47
79050794 ATTGTGGGCT
* ** * *
79050804 AGTGTAAGACATGTCTAGGACATGCATCAGCC-ACATTATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTACAAGACGAGAGCC
* * * * *
79050850 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-CGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTACAAGACGAGAGCC
79050898 AGTGTAAGACATGTCTGGGACATGCATCAGCCTA-AAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTACAAGACG-AGAGCC
* ** * * * *
79050944 AGTGTAAGACATGTTTGGGACATGCATC-GGTTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTACAAGACGAGAGCC
79050990 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
79051015 GCATTGACAT
Statistics
Matches: 137, Mismatches: 20, Indels: 15
0.80 0.12 0.09
Matches are distributed among these distances:
45 4 0.03
46 67 0.49
47 42 0.31
48 24 0.18
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTACAAGACGAGAGCC
Found at i:79051029 original size:47 final size:49
Alignment explanation
Indices: 79050848--79051065 Score: 147
Period size: 47 Copynumber: 4.6 Consensus size: 49
79050838 ATTATGAGAG
* * *
79050848 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACG--AGT
1 CTAGTGTAAGACCATGTCTGGGACATGGCATTGACATAGAGACGTAAGT
* * *
79050895 GCTAGTGTAAGA-CATGTCTGGGACAT-GCA-TCAGCCTAAAGACGTAAG-
1 -CTAGTGTAAGACCATGTCTGGGACATGGCATTGA-CATAGAGACGTAAGT
* * * ** *
79050942 CCAGTGTAAGA-CATGTTTGGGACAT-GCATCG-GTTACGAGATG-ATAGT
1 CTAGTGTAAGACCATGTCTGGGACATGGCATTGACATA-GAGACGTA-AGT
** *
79050989 C-AGTGTAAGACCATGTCTGGGACATGGCATTGACAT-GAGATATGAG-
1 CTAGTGTAAGACCATGTCTGGGACATGGCATTGACATAGAGACGTAAGT
* * *
79051035 CTAGTGTAAGACCGTGTCTAGGATATGGCAT
1 CTAGTGTAAGACCATGTCTGGGACATGGCAT
79051066 CAGCACCTTA
Statistics
Matches: 135, Mismatches: 23, Indels: 25
0.74 0.13 0.14
Matches are distributed among these distances:
45 3 0.02
46 52 0.39
47 61 0.45
48 18 0.13
49 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.24
Consensus pattern (49 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATTGACATAGAGACGTAAGT
Found at i:79051041 original size:93 final size:93
Alignment explanation
Indices: 79050801--79051066 Score: 226
Period size: 94 Copynumber: 2.8 Consensus size: 93
79050791 GTTATTGTGG
* * *
79050801 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACATTATG--A-GAGCTAGTGTAAGACCAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG---CATAAAGACATGAGCTAGTGTAAGA-CAT
79050863 GTCTGGGACATGGCATCGGCATCGAGACGAGT
62 GTCTGGGACATGGCATCGGCATCGAGACGAGT
* * * * *
79050895 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTAAAGACGTAAGCCAGTGTAAGACATGTTT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATAAAGACATGAGCTAGTGTAAGACATGTCT
* *
79050960 GGGACAT-GCATCGG-TTACGAGATGA-T
66 GGGACATGGCATCGGCAT-CGAGACGAGT
* * *
79050986 AG-TCAGTGTAAGACCATGTCTGGGACATGGCAT-TGACAT-GAGATATGAGCTAGTGTAAGACC
1 -GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCAG-CATAAAGACATGAGCTAGTGTAAGA-C
* * *
79051048 GTGTCTAGGATATGGCATC
60 ATGTCTGGGACATGGCATC
79051067 AGCACCTTAC
Statistics
Matches: 140, Mismatches: 21, Indels: 21
0.77 0.12 0.12
Matches are distributed among these distances:
91 7 0.05
92 24 0.17
93 44 0.31
94 60 0.43
95 5 0.04
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATAAAGACATGAGCTAGTGTAAGACATGTCT
GGGACATGGCATCGGCATCGAGACGAGT
Found at i:79056276 original size:55 final size:55
Alignment explanation
Indices: 79056216--79056328 Score: 145
Period size: 55 Copynumber: 2.1 Consensus size: 55
79056206 CAAGCCTGCC
* * *
79056216 AAAACAACACGGGCGTGCGACATGCCCGGGTGGAAGAACCGTGGGCGAACCTGTT
1 AAAACAACACGGGAGTGCGACACGCCCGGGTGGAACAACCGTGGGCGAACCTGTT
** * * * *
79056271 AAAACAACACGGGAGTTTGACACGCCCGTGTGGAACACCCGTGGTCGAACTTGTT
1 AAAACAACACGGGAGTGCGACACGCCCGGGTGGAACAACCGTGGGCGAACCTGTT
79056326 AAA
1 AAA
79056329 TTAACACGAG
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.29, C:0.25, G:0.30, T:0.16
Consensus pattern (55 bp):
AAAACAACACGGGAGTGCGACACGCCCGGGTGGAACAACCGTGGGCGAACCTGTT
Found at i:79061527 original size:28 final size:28
Alignment explanation
Indices: 79061487--79061544 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 28
79061477 CACATGGGTT
79061487 AGGACACGAGC-GTGTCATGGCCGTGTGA
1 AGGACACGAGCGGTGTCA-GGCCGTGTGA
*
79061515 AGGACACGGGCGTGTGTCAGGCCGTGTGA
1 AGGACACGAGCG-GTGTCAGGCCGTGTGA
79061544 A
1 A
79061545 AACCCCTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 10 0.37
29 11 0.41
30 6 0.22
ACGTcount: A:0.21, C:0.21, G:0.41, T:0.17
Consensus pattern (28 bp):
AGGACACGAGCGGTGTCAGGCCGTGTGA
Found at i:79064694 original size:3 final size:3
Alignment explanation
Indices: 79064688--79064744 Score: 68
Period size: 3 Copynumber: 20.3 Consensus size: 3
79064678 TTTTTCTTTT
*
79064688 TTC TTC TTC -TC TTC TTC TTC TT- TTT TTC TTC TTC -TC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
*
79064733 TT- TTT TTC TTC T
1 TTC TTC TTC TTC T
79064745 CCTTTCTCTC
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
2 8 0.17
3 40 0.83
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (3 bp):
TTC
Found at i:79064702 original size:11 final size:11
Alignment explanation
Indices: 79064689--79064768 Score: 69
Period size: 11 Copynumber: 7.5 Consensus size: 11
79064679 TTTTCTTTTT
79064689 TCTTCTTC-TC
1 TCTTCTTCTTC
*
79064699 TTCTTCTTCTTT
1 -TCTTCTTCTTC
*
79064711 TTTTCTTCTTC
1 TCTTCTTCTTC
79064722 TCTTCTTCTTC
1 TCTTCTTCTTC
* *
79064733 TTTTTTTCTTC
1 TCTTCTTCTTC
*
79064744 TCCT-TTC-TC
1 TCTTCTTCTTC
79064753 TCTT-TTCTTTC
1 TCTTCTTC-TTC
79064764 TCTTC
1 TCTTC
79064769 CAGTGTGTGG
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
9 8 0.14
10 3 0.05
11 44 0.79
12 1 0.02
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (11 bp):
TCTTCTTCTTC
Found at i:79064707 original size:14 final size:14
Alignment explanation
Indices: 79064688--79064768 Score: 82
Period size: 14 Copynumber: 6.0 Consensus size: 14
79064678 TTTTTCTTTT
79064688 TTCTTCTTCTCTTC
1 TTCTTCTTCTCTTC
79064702 TTCTTCTT-T-TT-
1 TTCTTCTTCTCTTC
79064713 TTCTTCTTCTCTTC
1 TTCTTCTTCTCTTC
* *
79064727 TTCTTCTTTTTTTC
1 TTCTTCTTCTCTTC
*
79064741 TTCTCCTT-TCTCTC
1 TTCTTCTTCTCT-TC
79064755 TT-TTCTTTCTCTTC
1 TTCTTC-TTCTCTTC
79064769 CAGTGTGTGG
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
11 8 0.14
12 3 0.05
13 7 0.12
14 35 0.62
15 3 0.05
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (14 bp):
TTCTTCTTCTCTTC
Found at i:79064717 original size:25 final size:25
Alignment explanation
Indices: 79064684--79064768 Score: 124
Period size: 25 Copynumber: 3.5 Consensus size: 25
79064674 CTTTTTTTTC
79064684 TTTTTTCTTCTTCTCTTCTTCTTCT
1 TTTTTTCTTCTTCTCTTCTTCTTCT
79064709 TTTTTTCTTCTTCTCTTCTTCTTCT
1 TTTTTTCTTCTTCTCTTCTTCTTCT
*
79064734 TTTTTTCTTCTCCT-TTC-TC-TCT
1 TTTTTTCTTCTTCTCTTCTTCTTCT
79064756 TTTCTTTC-TCTTC
1 TTT-TTTCTTCTTC
79064769 CAGTGTGTGG
Statistics
Matches: 57, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
22 10 0.18
23 6 0.11
24 3 0.05
25 38 0.67
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (25 bp):
TTTTTTCTTCTTCTCTTCTTCTTCT
Found at i:79065014 original size:13 final size:14
Alignment explanation
Indices: 79064996--79065024 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
79064986 AAAATAATAT
79064996 TTTATT-TAAAAAA
1 TTTATTATAAAAAA
79065009 TTTATTATAAAAAA
1 TTTATTATAAAAAA
79065023 TT
1 TT
79065025 AAATCGAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TTTATTATAAAAAA
Found at i:79066275 original size:18 final size:18
Alignment explanation
Indices: 79066248--79066285 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
79066238 ATGTGTATGA
* *
79066248 TTAAATCAAAATTAAAGT
1 TTAAACCAAAAATAAAGT
79066266 TTAAACCAAAAATAAAGT
1 TTAAACCAAAAATAAAGT
79066284 TT
1 TT
79066286 CACATGTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.55, C:0.08, G:0.05, T:0.32
Consensus pattern (18 bp):
TTAAACCAAAAATAAAGT
Found at i:79072286 original size:43 final size:42
Alignment explanation
Indices: 79072216--79072360 Score: 123
Period size: 43 Copynumber: 3.4 Consensus size: 42
79072206 ATATCGTACA
* * * **
79072216 ATGCCAACGTCCTAGAC-GTGGTATTACATGTAATCACACGTCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACATG-AATCACAAATCG
* * * *
79072259 ATGCCACTGTCGCAGACAGGGTCTTACACGAATCACAATTACG
1 ATGCCAATGTCCCAGACAGGGTCTTACATGAATCACAAAT-CG
* *
79072302 ATGCCAATGTCCCAGACATGGTCTTAC-TCGAAATCACATATCG
1 ATGCCAATGTCCCAGACAGGGTCTTACAT-G-AATCACAAATCG
*
79072345 ATGCCAATGTCTCAGA
1 ATGCCAATGTCCCAGA
79072361 ACTTCTCAGT
Statistics
Matches: 83, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
42 8 0.10
43 66 0.80
44 9 0.11
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACATGAATCACAAATCG
Found at i:79077392 original size:43 final size:42
Alignment explanation
Indices: 79077246--79077417 Score: 154
Period size: 43 Copynumber: 4.0 Consensus size: 42
79077236 ATATCGTACA
* * * * *
79077246 ATGCCAACGCCCCAGACGTGGTCTTACATGTAATCACATGTCG
1 ATGCCAACG-TCCAGACATGGTCTTACACGAAATCACATATCG
*
79077289 ATGCC-ACTGTCGCAGACAGGGTCTTACACG-AATCACA-ATTACG
1 ATGCCAAC-GTC-CAGACATGGTCTTACACGAAATCACATA-T-CG
* *
79077332 ATGCCAATGTCCCAGACATGGTCTTACTCGAAATCACATATCG
1 ATGCCAACGT-CCAGACATGGTCTTACACGAAATCACATATCG
* *
79077375 ATGCCAACATCCTAGACATGGTATTACACGAGAA-CACATATCG
1 ATGCCAACGTCC-AGACATGGTCTTACACGA-AATCACATATCG
79077418 GAAATCCTAT
Statistics
Matches: 107, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 13 0.12
43 81 0.76
44 12 0.11
45 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.23
Consensus pattern (42 bp):
ATGCCAACGTCCAGACATGGTCTTACACGAAATCACATATCG
Found at i:79077392 original size:86 final size:86
Alignment explanation
Indices: 79077246--79077405 Score: 200
Period size: 86 Copynumber: 1.9 Consensus size: 86
79077236 ATATCGTACA
* * * *
79077246 ATGCCAACGCCCCAGACGTGGTCTTACATGTAATCACATGTCGATGCCACTGTCGCAGACAGGGT
1 ATGCCAACGCCCCAGACATGGTCTTACATGAAATCACATATCGATGCCACTATCGCAGACAGGGT
*
79077311 CTTACACGAATCACAATTACG
66 ATTACACGAATCACAATTACG
* * *
79077332 ATGCCAATGTCCCAGACATGGTCTTAC-TCGAAATCACATATCGATGCCAAC-ATC-CTAGACAT
1 ATGCCAACGCCCCAGACATGGTCTTACAT-GAAATCACATATCGATGCC-ACTATCGC-AGACAG
79077394 GGTATTACACGA
63 GGTATTACACGA
79077406 GAACACATAT
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
85 2 0.03
86 59 0.94
87 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (86 bp):
ATGCCAACGCCCCAGACATGGTCTTACATGAAATCACATATCGATGCCACTATCGCAGACAGGGT
ATTACACGAATCACAATTACG
Found at i:79078563 original size:14 final size:15
Alignment explanation
Indices: 79078546--79078574 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
79078536 GCACAAAAAT
79078546 TTCACACAT-ATAAA
1 TTCACACATAATAAA
79078560 TTCACACATAATAAA
1 TTCACACATAATAAA
79078575 CACTGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:79082142 original size:44 final size:44
Alignment explanation
Indices: 79082088--79082172 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
79082078 ATTTCACTAG
* * *
79082088 AACTGACCTTATTACCAA-TCTAAATCGAGTTTAAGTACATCAAA
1 AACTAACCTTATTACCAATTC-AAATCGAATTCAAGTACATCAAA
*
79082132 AACTAACCTTATTATCAATTCAAATCGAATTCAAGTACATC
1 AACTAACCTTATTACCAATTCAAATCGAATTCAAGTACATC
79082173 GAGAAGGGGG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 34 0.94
45 2 0.06
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (44 bp):
AACTAACCTTATTACCAATTCAAATCGAATTCAAGTACATCAAA
Found at i:79096102 original size:24 final size:24
Alignment explanation
Indices: 79095988--79096102 Score: 99
Period size: 24 Copynumber: 4.8 Consensus size: 24
79095978 GAGTCATGGT
* *
79095988 CAGTAAGCTCCTCTGAGCTGATAAA
1 CAGTAAGCTCTTTTGAGCTGA-AAA
* *
79096013 CAGTAAGCTCTATTAAGCTGAAAA
1 CAGTAAGCTCTTTTGAGCTGAAAA
*
79096037 CAGTAAGCTCTTTCGAGCT-AAATA
1 CAGTAAGCTCTTTTGAGCTGAAA-A
* *** * *
79096061 -GGTAAGCTCCAATAAGCTGAAAG
1 CAGTAAGCTCTTTTGAGCTGAAAA
79096084 CAGTAAGCTCTTTTGAGCT
1 CAGTAAGCTCTTTTGAGCT
79096103 ATGGTGAGTC
Statistics
Matches: 68, Mismatches: 19, Indels: 7
0.72 0.20 0.07
Matches are distributed among these distances:
23 15 0.22
24 36 0.53
25 17 0.25
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (24 bp):
CAGTAAGCTCTTTTGAGCTGAAAA
Found at i:79099268 original size:22 final size:22
Alignment explanation
Indices: 79099242--79099298 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 22
79099232 TAAAACTAAC
79099242 ATAGAATCAAAAATCATGATTT
1 ATAGAATCAAAAATCATGATTT
*
79099264 ATAGATGGAATAAAAAATCATGATTT
1 AT--A--GAATCAAAAATCATGATTT
79099290 ATA-AATCAA
1 ATAGAATCAA
79099299 TTTGTACCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
21 5 0.17
22 2 0.07
24 2 0.07
26 20 0.69
ACGTcount: A:0.53, C:0.07, G:0.11, T:0.30
Consensus pattern (22 bp):
ATAGAATCAAAAATCATGATTT
Done.