Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 239 of 344
Found at i:79101963 original size:26 final size:26
Alignment explanation
Indices: 79101934--79101984 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
79101924 ACATGGGATA
79101934 TAAGAAATTAACATCAAAATATAAAT
1 TAAGAAATTAACATCAAAATATAAAT
* *
79101960 TAAGAAATTAACATTAGAATATAAA
1 TAAGAAATTAACATCAAAATATAAA
79101985 ACAAATCACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.27
Consensus pattern (26 bp):
TAAGAAATTAACATCAAAATATAAAT
Found at i:79102373 original size:50 final size:52
Alignment explanation
Indices: 79102296--79102400 Score: 169
Period size: 50 Copynumber: 2.1 Consensus size: 52
79102286 CAAATATAAA
* * *
79102296 AAAATTATATATACAAATATAATTCATTTATAAAAGAATATGCGTTAGTATG
1 AAAATTATATATACAAATATAATTCATTGATAAAAGAATAAGAGTTAGTATG
79102348 AAAATT-T-TATACAAATATAATTCATTGATAAAAGAATAAGAGTTAGTATG
1 AAAATTATATATACAAATATAATTCATTGATAAAAGAATAAGAGTTAGTATG
79102398 AAA
1 AAA
79102401 TAAACTTGTG
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
50 43 0.86
51 1 0.02
52 6 0.12
ACGTcount: A:0.50, C:0.05, G:0.10, T:0.34
Consensus pattern (52 bp):
AAAATTATATATACAAATATAATTCATTGATAAAAGAATAAGAGTTAGTATG
Found at i:79110649 original size:8 final size:8
Alignment explanation
Indices: 79110636--79110674 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
79110626 ATTTTAAAGA
79110636 AAGGGCAT
1 AAGGGCAT
79110644 AAGGGCAT
1 AAGGGCAT
79110652 AAGGGCAT
1 AAGGGCAT
*
79110660 GAGGGCAT
1 AAGGGCAT
*
79110668 GAGGGCA
1 AAGGGCA
79110675 ATTTGGTCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.33, C:0.13, G:0.44, T:0.10
Consensus pattern (8 bp):
AAGGGCAT
Found at i:79115460 original size:43 final size:43
Alignment explanation
Indices: 79115380--79115550 Score: 227
Period size: 43 Copynumber: 4.0 Consensus size: 43
79115370 TCTGAACTCA
* * ** *
79115380 TTCACTGGCATT-TCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCTCGATATCAT
* * *
79115422 TTCACCGGCATTATAGCCTGCTACGCCCGAGGCTCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCTCGATATCAT
* *
79115465 CTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCTCGATATCAT
*
79115508 TTCACCGGCATTACAGCCTGCTAGGCCCGAAGCTCGAATATCA
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCTCG-ATATCA
79115551 CATTTCGATA
Statistics
Matches: 111, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 11 0.10
43 94 0.85
44 6 0.05
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.25
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCTCGATATCAT
Found at i:79115488 original size:86 final size:85
Alignment explanation
Indices: 79115381--79115544 Score: 256
Period size: 86 Copynumber: 1.9 Consensus size: 85
79115371 CTGAACTCAT
* * ** *
79115381 TCACTGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGCATTATAGCCTGCTAC
1 TCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATCATTTCACCGGCATTACAGCCTGCTAC
*
79115446 GCCCGAGGCTCGATATTATC
66 GCCCGAAGCTCGATATTATC
79115466 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCATTTCACCGGCATTACAGCCTGCTA
1 TCACCGGCATT-TAGCCTGCTAGGCCCGAAGCCCGATATCATTTCACCGGCATTACAGCCTGCTA
*
79115531 GGCCCGAAGCTCGA
65 CGCCCGAAGCTCGA
79115545 ATATCACATT
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
85 10 0.14
86 61 0.86
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.24
Consensus pattern (85 bp):
TCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATCATTTCACCGGCATTACAGCCTGCTAC
GCCCGAAGCTCGATATTATC
Found at i:79116388 original size:39 final size:39
Alignment explanation
Indices: 79116329--79116407 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
79116319 TAATATAAAC
79116329 ATACGGCTATGTATCACCATATAACTAACTCATTAACTA
1 ATACGGCTATGTATCACCATATAACTAACTCATTAACTA
* * *
79116368 ATACGGTTATTTATCTCCATATAACTAACTCATTAACTA
1 ATACGGCTATGTATCACCATATAACTAACTCATTAACTA
79116407 A
1 A
79116408 CACTTAATCC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34
Consensus pattern (39 bp):
ATACGGCTATGTATCACCATATAACTAACTCATTAACTA
Found at i:79118329 original size:40 final size:40
Alignment explanation
Indices: 79118274--79118415 Score: 207
Period size: 40 Copynumber: 3.6 Consensus size: 40
79118264 TATTCGAATG
79118274 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
79118314 ATATCCGGGCTAAGTCTCAAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
79118354 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
79118394 ATAT-CTGGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
79118416 TACTTGGGTT
Statistics
Matches: 92, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 15 0.16
40 75 0.82
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:79123497 original size:29 final size:29
Alignment explanation
Indices: 79123455--79123513 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
79123445 CTAGGTTAGT
79123455 CTGAGAATCGACTAAACCATGCTCTGATA
1 CTGAGAATCGACTAAACCATGCTCTGATA
*
79123484 CTGAGAATTGACTAAACCATGCTCTGATA
1 CTGAGAATCGACTAAACCATGCTCTGATA
79123513 C
1 C
79123514 CACTAAATGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (29 bp):
CTGAGAATCGACTAAACCATGCTCTGATA
Found at i:79125371 original size:43 final size:42
Alignment explanation
Indices: 79125225--79125414 Score: 158
Period size: 43 Copynumber: 4.6 Consensus size: 42
79125215 TTTATCAAAA
* * * *
79125225 CACCGGCATT-TAGCCTGCTAGGTTTTAAACCCGAATTCA-T
1 CACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGAACTCATT
* ** * * * *
79125265 CACCAGCACGA-AGCCTGCTAGACTTTAAGTCTGAACTCATT
1 CACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGAACTCATT
* *
79125306 CACTGGCATT-TCGCCTGCTAGGCTTGAAGCCCGATA-TCATTT
1 CACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGA-ACTCA-TT
** *
79125348 CACCGGCATTATAGCCTGCTAGGCCCGAAGCCC-AATATCATTT
1 CACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGAA-CTCA-TT
79125391 CACCGGCATTATAGCCTGCTAGGC
1 CACCGGCATTATAGCCTGCTAGGC
79125415 CCGAAGCTCG
Statistics
Matches: 120, Mismatches: 22, Indels: 13
0.77 0.14 0.08
Matches are distributed among these distances:
40 29 0.24
41 29 0.24
42 13 0.11
43 49 0.41
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (42 bp):
CACCGGCATTATAGCCTGCTAGGCTTGAAGCCCGAACTCATT
Found at i:79125415 original size:43 final size:43
Alignment explanation
Indices: 79125304--79125431 Score: 186
Period size: 43 Copynumber: 3.0 Consensus size: 43
79125294 TCTGAACTCA
* * ** *
79125304 TTCACTGGCATT-TCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCAATATCAT
79125346 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCAATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCAATATCAT
*
79125389 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCTCGAATATCA
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGC-CCAATATCA
79125432 CATTTCGATA
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
42 11 0.14
43 59 0.76
44 8 0.10
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCAATATCAT
Found at i:79129672 original size:12 final size:11
Alignment explanation
Indices: 79129651--79129712 Score: 54
Period size: 11 Copynumber: 5.6 Consensus size: 11
79129641 AATTGAAATG
* *
79129651 AAAATTAAAAG
1 AAAAATAAAAA
79129662 AAAAATAAAAA
1 AAAAATAAAAA
79129673 TAAAAATAAAAA
1 -AAAAATAAAAA
* *
79129685 AAGAAT-AAAT
1 AAAAATAAAAA
*
79129695 AATAATAAAAA
1 AAAAATAAAAA
*
79129706 ATAAATA
1 AAAAATA
79129713 GGAGGAGTCA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
10 8 0.20
11 22 0.54
12 11 0.27
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (11 bp):
AAAAATAAAAA
Found at i:79129694 original size:21 final size:20
Alignment explanation
Indices: 79129662--79129706 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
79129652 AAATTAAAAG
*
79129662 AAAAATAAAAATAAAAATAA
1 AAAAAGAAAAATAAAAATAA
*
79129682 AAAAAGAATAAATAATAATAA
1 AAAAAGAA-AAATAAAAATAA
79129703 AAAA
1 AAAA
79129707 TAAATAGGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (20 bp):
AAAAAGAAAAATAAAAATAA
Found at i:79129702 original size:6 final size:6
Alignment explanation
Indices: 79129646--79129699 Score: 56
Period size: 6 Copynumber: 9.0 Consensus size: 6
79129636 AATAAAATTG
* * * *
79129646 AAATGA AAATTA AAAGAA AAATAA AAATAA AAATAA AAA-AA GAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
79129693 ATAATAA
1 A-AATAA
79129700 TAAAAAATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
5 4 0.10
6 31 0.77
7 5 0.12
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:79129711 original size:17 final size:17
Alignment explanation
Indices: 79129663--79129712 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
79129653 AATTAAAAGA
79129663 AAAATAAAAATAAA-AAT
1 AAAA-AAAAATAAATAAT
79129680 AAAAAAAGAATAAATAAT
1 AAAAAAA-AATAAATAAT
*
79129698 AATAAAAAATAAATA
1 AAAAAAAAATAAATA
79129713 GGAGGAGTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
16 3 0.10
17 18 0.60
18 9 0.30
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (17 bp):
AAAAAAAAATAAATAAT
Found at i:79135404 original size:42 final size:42
Alignment explanation
Indices: 79135358--79135443 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
79135348 GTTTCACCCT
79135358 AATTCGGTAAAATCTCGTAACCCTATTTCTAGGCGTTCGATC
1 AATTCGGTAAAATCTCGTAACCCTATTTCTAGGCGTTCGATC
79135400 AATTCGGTAAAATCTCGTAACCCTATTTCTAGGCGTTCGATC
1 AATTCGGTAAAATCTCGTAACCCTATTTCTAGGCGTTCGATC
79135442 AA
1 AA
79135444 CTCCGCTTAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (42 bp):
AATTCGGTAAAATCTCGTAACCCTATTTCTAGGCGTTCGATC
Found at i:79142499 original size:55 final size:55
Alignment explanation
Indices: 79142374--79142501 Score: 148
Period size: 55 Copynumber: 2.3 Consensus size: 55
79142364 CCCCCTCCCA
* * *
79142374 TGTTAATCTGACAGGTTCGACCACGGGTTCTAGACACGGGCATGGCGCATGACCG
1 TGTTAATTTGACAGGTTTGACCACGGGTTCTAGACACGGGCATGGCGCACGACCG
* * * * * *
79142429 TGTTAATTTGACAGGTTTGGCCACGGTTTCTAGGCACGGGCGTGTCGCACGCCCG
1 TGTTAATTTGACAGGTTTGACCACGGGTTCTAGACACGGGCATGGCGCACGACCG
** *
79142484 TGTTGTTTTGGCAGGTTT
1 TGTTAATTTGACAGGTTT
79142502 ACCCACGACC
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 61 1.00
ACGTcount: A:0.16, C:0.23, G:0.32, T:0.29
Consensus pattern (55 bp):
TGTTAATTTGACAGGTTTGACCACGGGTTCTAGACACGGGCATGGCGCACGACCG
Found at i:79151557 original size:28 final size:28
Alignment explanation
Indices: 79151524--79151606 Score: 166
Period size: 28 Copynumber: 3.0 Consensus size: 28
79151514 TATGTCCTTA
79151524 GCCCGTATTCCTCACACGGCCTGGACAT
1 GCCCGTATTCCTCACACGGCCTGGACAT
79151552 GCCCGTATTCCTCACACGGCCTGGACAT
1 GCCCGTATTCCTCACACGGCCTGGACAT
79151580 GCCCGTATTCCTCACACGGCCTGGACA
1 GCCCGTATTCCTCACACGGCCTGGACA
79151607 CGCCTGTGTC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.18, C:0.40, G:0.22, T:0.20
Consensus pattern (28 bp):
GCCCGTATTCCTCACACGGCCTGGACAT
Found at i:79162291 original size:23 final size:23
Alignment explanation
Indices: 79162265--79162325 Score: 113
Period size: 23 Copynumber: 2.7 Consensus size: 23
79162255 TATTTCAATG
*
79162265 TTCACTTTGATACTTAGATTTTT
1 TTCAATTTGATACTTAGATTTTT
79162288 TTCAATTTGATACTTAGATTTTT
1 TTCAATTTGATACTTAGATTTTT
79162311 TTCAATTTGATACTT
1 TTCAATTTGATACTT
79162326 TGAAGGTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.25, C:0.11, G:0.08, T:0.56
Consensus pattern (23 bp):
TTCAATTTGATACTTAGATTTTT
Found at i:79162335 original size:23 final size:23
Alignment explanation
Indices: 79162265--79162335 Score: 70
Period size: 23 Copynumber: 3.1 Consensus size: 23
79162255 TATTTCAATG
* ***
79162265 TTCACTTTGATACTTAGATTTTT
1 TTCAATTTGATACTTAGAAGGTT
***
79162288 TTCAATTTGATACTTAGATTTTT
1 TTCAATTTGATACTTAGAAGGTT
*
79162311 TTCAATTTGATACTTTGAAGGTT
1 TTCAATTTGATACTTAGAAGGTT
79162334 TT
1 TT
79162336 TTTGCTCCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.24, C:0.10, G:0.11, T:0.55
Consensus pattern (23 bp):
TTCAATTTGATACTTAGAAGGTT
Found at i:79167370 original size:21 final size:20
Alignment explanation
Indices: 79167357--79167404 Score: 87
Period size: 21 Copynumber: 2.4 Consensus size: 20
79167347 TTTATATAGA
79167357 TTTTTTAGTATTTTTTAAAG
1 TTTTTTAGTATTTTTTAAAG
79167377 TTTTTTTAGTATTTTTTAAAG
1 -TTTTTTAGTATTTTTTAAAG
79167398 TTTTTTA
1 TTTTTTA
79167405 AAAGAACTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 7 0.26
21 20 0.74
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (20 bp):
TTTTTTAGTATTTTTTAAAG
Found at i:79167371 original size:10 final size:10
Alignment explanation
Indices: 79167356--79167394 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
79167346 TTTTATATAG
79167356 ATTTTTTAGT
1 ATTTTTTAGT
79167366 ATTTTTTAAAGT
1 ATTTTTT--AGT
79167378 -TTTTTTAGT
1 ATTTTTTAGT
79167387 ATTTTTTA
1 ATTTTTTA
79167395 AAGTTTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
9 3 0.12
10 14 0.54
11 6 0.23
12 3 0.12
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (10 bp):
ATTTTTTAGT
Found at i:79167402 original size:11 final size:11
Alignment explanation
Indices: 79167367--79167408 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
79167357 TTTTTTAGTA
79167367 TTTTTTAAAGT
1 TTTTTTAAAGT
79167378 TTTTTT--AGT
1 TTTTTTAAAGT
79167387 ATTTTTTAAAGT
1 -TTTTTTAAAGT
*
79167399 TTTTTAAAAG
1 TTTTTTAAAG
79167409 AACTTTGTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
9 3 0.11
10 6 0.22
11 15 0.56
12 3 0.11
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.62
Consensus pattern (11 bp):
TTTTTTAAAGT
Found at i:79180365 original size:122 final size:122
Alignment explanation
Indices: 79180148--79180373 Score: 380
Period size: 122 Copynumber: 1.9 Consensus size: 122
79180138 GAATGTATTG
*
79180148 AAATGGTACCATTTTGGTTGCTAGGTGTGCATGAGGAAAGGGTGGCAAATTGGCTTTACAAATAG
1 AAATGATACCATTTTGGTTGCTAGGTGTGCATGAGGAAAGGGTGGCAAATTGGCTTTACAAATAG
79180213 CCTATTTTTATCCACACAGGCAAAGACACGGGCGTGTGTGACACACGGTCACGCTAC
66 CCTATTTTTATCCACACAGGCAAAGACACGGGCGTGTGTGACACACGGTCACGCTAC
* *
79180270 AAATGATATCATTTTGGTTGCTAGGTGTGCATGAGGAAAGGGTGGCAAATTGGCTTTGCAAATAG
1 AAATGATACCATTTTGGTTGCTAGGTGTGCATGAGGAAAGGGTGGCAAATTGGCTTTACAAATAG
* ** * *
79180335 CCTATTTTTATCTACATGGGTAGAGACACGGGCGTGTGT
66 CCTATTTTTATCCACACAGGCAAAGACACGGGCGTGTGT
79180374 CTCAGTCGTG
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
122 96 1.00
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (122 bp):
AAATGATACCATTTTGGTTGCTAGGTGTGCATGAGGAAAGGGTGGCAAATTGGCTTTACAAATAG
CCTATTTTTATCCACACAGGCAAAGACACGGGCGTGTGTGACACACGGTCACGCTAC
Found at i:79188312 original size:20 final size:20
Alignment explanation
Indices: 79188249--79188313 Score: 60
Period size: 20 Copynumber: 3.1 Consensus size: 20
79188239 TTTTCCTTTA
*
79188249 TTTTCTTTCTTCCTTCTTTATT
1 TTTTCTTT-TT-CTTCTTTAAT
** *
79188271 TTTTCTTCTTT-TTCAATCAT
1 TTTTCTT-TTTCTTCTTTAAT
79188291 TTTTCTTTTTCTTCTTTAAT
1 TTTTCTTTTTCTTCTTTAAT
79188311 TTT
1 TTT
79188314 CATAAGGAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
19 3 0.09
20 21 0.62
22 9 0.26
23 1 0.03
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.72
Consensus pattern (20 bp):
TTTTCTTTTTCTTCTTTAAT
Found at i:79192904 original size:145 final size:144
Alignment explanation
Indices: 79192717--79193115 Score: 421
Period size: 145 Copynumber: 2.7 Consensus size: 144
79192707 TACTTAACCA
* * *
79192717 TAATTATATAATGTCAAATT-TATATATTATGATCTACCATAAAATTAGTTACACATTTAATGTT
1 TAATTATATAATG-CTAATTATATATATTATAATCTACCATAAAATTAGTTACATATTTAA-GTT
*
79192781 TAAAGTTACATATCATTAATATAAAAATATACATTATAATATCATAATTGTATATAGGGTTAGAT
64 T-AAGTTACA-ATCATTAATATAAAAATATACATTATAATATCATAATTGTATATAGGGTAAGAT
79192846 ATCATTAATAATCTACC-
127 ATCATTAATAATCTACCT
* * **
79192863 TAATTATATAACGCTAATTATAT-TATTATAATCTACCATAAATTTAGTTACATGCTTAGAGTTT
1 TAATTATATAATGCTAATTATATATATTATAATCTACCATAAAATTAGTTACATATTTA-AGTTT
** * ** * ** * * *
79192927 AAGTTTACAAATCAAAAACATAAAAACGTACATTATAAAAAAATAGTTGTATATGGGGTAATATA
65 AAG-TTAC-AATCATTAATATAAAAATATACATTATAATATCATAATTGTATATAGGGTAAGATA
*
79192992 TCATTTATAATCTACCT
128 TCATTAATAATCTACCT
* * * * * *
79193009 TAATTTTATAATGTTGATTATATATATTATAATATACCATAAAATTAGCTACATATTTGAGGTTT
1 TAATTATATAATGCTAATTATATATATTATAATCTACCATAAAATTAGTTACATATTT-AAGTTT
* *
79193074 ATGTTGA-AATCATTAATA-AAAGAATAAACATTATAATATCAT
65 AAGTT-ACAATCATTAATATAAA-AATATACATTATAATATCAT
79193116 TATACATTCA
Statistics
Matches: 204, Mismatches: 40, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
144 6 0.03
145 123 0.60
146 38 0.19
147 36 0.18
148 1 0.00
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.39
Consensus pattern (144 bp):
TAATTATATAATGCTAATTATATATATTATAATCTACCATAAAATTAGTTACATATTTAAGTTTA
AGTTACAATCATTAATATAAAAATATACATTATAATATCATAATTGTATATAGGGTAAGATATCA
TTAATAATCTACCT
Found at i:79195611 original size:237 final size:237
Alignment explanation
Indices: 79195170--79195640 Score: 601
Period size: 237 Copynumber: 2.0 Consensus size: 237
79195160 AAAAAATGTC
79195170 GTTAATTATCGATGATTACCAAGATTCAGCACTTGTTGCAAACTCGAAGATACATGTGACACAGG
1 GTTAATTATCGATGATTACCAAGATTCAGCACTTGTTGCAAACTCGAAGATACATGTGACACAGG
* *
79195235 TTTAGCTCAGACAAGTAACCTGATATCTTTTTAAAGGTTTAACTCAGAAAGTTAACCTGACATGT
66 TTTAGCTCAGACAAGTAACCTGATATCGTTTTAAAGGTTTAACTCAGAAAGGTAACCTGACATGT
* * * *
79195300 ATATTTATAGCTTTGGCCAAACTATTTGATGTGTAGATAAAAGGTTTAGCCCGAATAGGTAACAT
131 ATATTTACAGCTTTAGCCAAACTATTTGATGTGTAGATAAAAGGTTTAGCCCGAACAAGTAACAT
*
79195365 GTCACAAATGGA-TCTGTTCAGCTCA-GACGAGCATTAGATATG
196 ATCACAAATGGATTC-GTTCAGCT-AGGACGAGCATTAGATATG
** * * *
79195407 GTTAATTA-CTGATGATTAGTAAGATTCAGCATTTGTTGCAGACTTGAAGATACATGTGACACAG
1 GTTAATTATC-GATGATTACCAAGATTCAGCACTTGTTGCAAACTCGAAGATACATGTGACACAG
* * * * * * *
79195471 GTTTTGCTC-GAACGAGTAACCTGATGTGGTTTTAAAGGTTTAGC-CTAGACAGGTAACTTGACA
65 GTTTAGCTCAG-ACAAGTAACCTGATATCGTTTTAAAGGTTTAACTC-AGAAAGGTAACCTGACA
* * * * * *
79195534 TGTATATTTACAGCTTTATCCAAGCTATTTGATGTGTTGATAAAAGGTTTAGTCTGGACAAGTAA
128 TGTATATTTACAGCTTTAGCCAAACTATTTGATGTGTAGATAAAAGGTTTAGCCCGAACAAGTAA
* * * *
79195599 CCTATTACAAATGGATTCGTTCATCTAGGATGAGCATTAGAT
193 CATATCACAAATGGATTCGTTCAGCTAGGACGAGCATTAGAT
79195641 GTGATTAGTA
Statistics
Matches: 200, Mismatches: 29, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
236 4 0.02
237 194 0.97
238 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (237 bp):
GTTAATTATCGATGATTACCAAGATTCAGCACTTGTTGCAAACTCGAAGATACATGTGACACAGG
TTTAGCTCAGACAAGTAACCTGATATCGTTTTAAAGGTTTAACTCAGAAAGGTAACCTGACATGT
ATATTTACAGCTTTAGCCAAACTATTTGATGTGTAGATAAAAGGTTTAGCCCGAACAAGTAACAT
ATCACAAATGGATTCGTTCAGCTAGGACGAGCATTAGATATG
Found at i:79195967 original size:27 final size:27
Alignment explanation
Indices: 79195929--79195986 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
79195919 TAATTATACA
79195929 CATTTATATACTTATGAACTTACTAAG
1 CATTTATATACTTATGAACTTACTAAG
79195956 CATTTATATACTTATGAACTTACTAAG
1 CATTTATATACTTATGAACTTACTAAG
79195983 CATT
1 CATT
79195987 AGTAATGCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.36, C:0.16, G:0.07, T:0.41
Consensus pattern (27 bp):
CATTTATATACTTATGAACTTACTAAG
Found at i:79203013 original size:22 final size:22
Alignment explanation
Indices: 79202966--79203013 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
79202956 TTGAAGTATT
* *
79202966 TCAATTTATATTTTCTTTGCAT
1 TCAATTTATATTTTATTTGCAA
*
79202988 TCAATTTATTTCTTTATTT-CAA
1 TCAATTTATAT-TTTATTTGCAA
79203010 TCAA
1 TCAA
79203014 GTGATTTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.27, C:0.15, G:0.02, T:0.56
Consensus pattern (22 bp):
TCAATTTATATTTTATTTGCAA
Found at i:79203531 original size:13 final size:14
Alignment explanation
Indices: 79203513--79203547 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
79203503 TTATCATTTG
79203513 TTTATTTTTC-TTA
1 TTTATTTTTCGTTA
79203526 TTTA-TTTTCGTTA
1 TTTATTTTTCGTTA
79203539 TTTATTTTT
1 TTTATTTTT
79203548 ATCTAAATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 5 0.25
13 11 0.55
14 4 0.20
ACGTcount: A:0.14, C:0.06, G:0.03, T:0.77
Consensus pattern (14 bp):
TTTATTTTTCGTTA
Found at i:79204801 original size:18 final size:18
Alignment explanation
Indices: 79204778--79204812 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
79204768 TTTTTACAAA
*
79204778 AATTCCTAAAGGATTTAT
1 AATTCCAAAAGGATTTAT
*
79204796 AATTCCAAAATGATTTA
1 AATTCCAAAAGGATTTA
79204813 AAACGAAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.37
Consensus pattern (18 bp):
AATTCCAAAAGGATTTAT
Found at i:79206111 original size:12 final size:11
Alignment explanation
Indices: 79206092--79206119 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
79206082 ATAGAGAATG
79206092 AGAAAAAAAAA
1 AGAAAAAAAAA
79206103 AGAAAAAAAAA
1 AGAAAAAAAAA
79206114 AGAAAA
1 AGAAAA
79206120 TTCTAACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (11 bp):
AGAAAAAAAAA
Found at i:79216952 original size:48 final size:48
Alignment explanation
Indices: 79216881--79217026 Score: 265
Period size: 48 Copynumber: 3.0 Consensus size: 48
79216871 CAAGATAAAT
79216881 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
79216929 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
79216977 ATATGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
79217025 AT
1 AT
79217027 GTGTGTATAT
Statistics
Matches: 95, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 95 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:79217219 original size:37 final size:37
Alignment explanation
Indices: 79217167--79217238 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 37
79217157 GGAAATATAT
79217167 TCCGGGTAAGACCCGA-AGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATA-ACTACGTGTGGAGATTTTG
* *
79217204 TCCGGGTAAGTCCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
79217239 CATCTGAGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 31 0.97
38 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:79218276 original size:42 final size:43
Alignment explanation
Indices: 79218179--79218336 Score: 178
Period size: 43 Copynumber: 3.7 Consensus size: 43
79218169 AGTAAATACA
* * * * *
79218179 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
* *
79218222 ATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCATATA-CG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGAAATCAAATATCG
* * *
79218264 ATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAGAA-GTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG-AAATCA-AATATCG
79218308 ATGCCAATGTCCCAGACGTGGTCTTACAC
1 ATGCCAATGTCCCAGACGTGGTCTTACAC
79218337 ACAAAACATA
Statistics
Matches: 97, Mismatches: 13, Indels: 9
0.82 0.11 0.08
Matches are distributed among these distances:
42 29 0.30
43 36 0.37
44 32 0.33
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
Found at i:79218323 original size:86 final size:85
Alignment explanation
Indices: 79218174--79218336 Score: 213
Period size: 86 Copynumber: 1.9 Consensus size: 85
79218164 TGAAAAGTAA
* * * * *
79218174 ATACAATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAACATCGATGCCACTGTCCCAGAC
1 ATACAATGCCAACGTCCCAGACATGGTCTTACACGTAAACAAACATCGATGCCAATGTCCCAGAC
79218239 AG-GGTCTTACACGAAATCAT
66 -GTGGTCTTACACGAAATCAT
* * *
79218259 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAGAA-GTCGATGCCAATGTCCCAG
1 ATACAATGCCAACGTCCCAGACATGGTCTTACACGT-AAACA-AACATCGATGCCAATGTCCCAG
79218323 ACGTGGTCTTACAC
64 ACGTGGTCTTACAC
79218337 ACAAAACATA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
85 32 0.48
86 33 0.49
87 2 0.03
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (85 bp):
ATACAATGCCAACGTCCCAGACATGGTCTTACACGTAAACAAACATCGATGCCAATGTCCCAGAC
GTGGTCTTACACGAAATCAT
Found at i:79218343 original size:44 final size:41
Alignment explanation
Indices: 79218179--79218344 Score: 145
Period size: 44 Copynumber: 3.9 Consensus size: 41
79218169 AGTAAATACA
* * *** *
79218179 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACCAAAAC-AA-ATCG
* * * *
79218222 ATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCATATACG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACCAAAACAAAT-CG
* *
79218264 ATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAGAAGTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACAC-CAAAACA-AA-TCG
79218308 ATGCCAATGTCCCAGACGTGGTCTTACACACAAAACA
1 ATGCCAATGTCCCAGACGTGGTCTTACAC-CAAAACA
79218345 TATATCGAAA
Statistics
Matches: 103, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
41 2 0.02
42 29 0.28
43 33 0.32
44 38 0.37
45 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.22
Consensus pattern (41 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACCAAAACAAATCG
Found at i:79225930 original size:44 final size:43
Alignment explanation
Indices: 79225789--79225945 Score: 146
Period size: 44 Copynumber: 3.7 Consensus size: 43
79225779 AGTAAATATA
* *
79225789 ATGCCAACGTCCTAGACGTGGTCTTACATGT--AATCAAACATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAAAATC-AA-ATCG
* * *
79225832 ATGCC-ACTGTCCCAGACAGGGTCTTACA--CAAAATCATATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAAAATCAAAT-CG
* *
79225874 ATGCTAATGTCCCAGACATGGTCTTACATGTAAAAT-AGAAGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAAAATCA-AA-TCG
*
79225918 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
79225946 CGCAAAACAG
Statistics
Matches: 92, Mismatches: 13, Indels: 17
0.75 0.11 0.14
Matches are distributed among these distances:
41 2 0.02
42 28 0.30
43 28 0.30
44 33 0.36
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAAAATCAAATCG
Found at i:79239993 original size:73 final size:71
Alignment explanation
Indices: 79239873--79240018 Score: 238
Period size: 73 Copynumber: 2.0 Consensus size: 71
79239863 GGAGGAACAA
* *
79239873 AGTTTACGAGGATTTGGCTCGTTCCCATCATTTTGTGTCGAGGTAAGTACATATGTGAATAATGT
1 AGTTTACAAGGATTTGGCTCGTTCCCATCATTTTGTGTCGAGATAAGTACATATGTGAATAATGT
79239938 GCCATTAT
66 --CATTAT
* *
79239946 AGTTTACAAGGATTTTGCTCGTTCCTATCATTTTGTGTCGAGATAAGTACATATGTGAATAATGT
1 AGTTTACAAGGATTTGGCTCGTTCCCATCATTTTGTGTCGAGATAAGTACATATGTGAATAATGT
79240011 CATTAT
66 CATTAT
79240017 AG
1 AG
79240019 CTTATTTTAA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
71 8 0.12
73 61 0.88
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (71 bp):
AGTTTACAAGGATTTGGCTCGTTCCCATCATTTTGTGTCGAGATAAGTACATATGTGAATAATGT
CATTAT
Found at i:79241676 original size:20 final size:21
Alignment explanation
Indices: 79241637--79241676 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
79241627 GTTATAATGA
79241637 CCACACGAGCGTGTTGCCCTT
1 CCACACGAGCGTGTTGCCCTT
*
79241658 CCACACGGGCGTG-TGCCCT
1 CCACACGAGCGTGTTGCCCT
79241677 GTTTCAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACGAGCGTGTTGCCCTT
Found at i:79245890 original size:21 final size:22
Alignment explanation
Indices: 79245844--79245892 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
79245834 AGTAGAACTA
*
79245844 CCAATAATTTGCAGACAAGCTG
1 CCAATAAGTTGCAGACAAGCTG
* *
79245866 CCAATAAGTTGC-GATAAGTTG
1 CCAATAAGTTGCAGACAAGCTG
79245887 CCAATA
1 CCAATA
79245893 CTCCAACAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.24
Consensus pattern (22 bp):
CCAATAAGTTGCAGACAAGCTG
Found at i:79247160 original size:16 final size:16
Alignment explanation
Indices: 79247139--79247172 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
79247129 CTCGTATCAT
79247139 AAGAACCACCTTACAC
1 AAGAACCACCTTACAC
79247155 AAGAACCACCTTACAC
1 AAGAACCACCTTACAC
79247171 AA
1 AA
79247173 CTACTACTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.35, G:0.06, T:0.12
Consensus pattern (16 bp):
AAGAACCACCTTACAC
Found at i:79247880 original size:23 final size:22
Alignment explanation
Indices: 79247827--79247880 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
79247817 GATGCGGACA
79247827 ATCTCTTTTAATGATAAGTGGC
1 ATCTCTTTTAATGATAAGTGGC
* *
79247849 ATTTCCTTTTAATGA-AATGTGGT
1 ATCT-CTTTTAATGATAA-GTGGC
79247872 ACTCTCTTT
1 A-TCTCTTT
79247881 ATATTTTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 5 0.19
23 19 0.73
24 2 0.08
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.46
Consensus pattern (22 bp):
ATCTCTTTTAATGATAAGTGGC
Found at i:79252960 original size:20 final size:20
Alignment explanation
Indices: 79252931--79252971 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
79252921 GAATGCCAAG
*
79252931 TGTGTGATAAAAATAATACA
1 TGTGTAATAAAAATAATACA
* *
79252951 TGTGTAATAAATATTATACA
1 TGTGTAATAAAAATAATACA
79252971 T
1 T
79252972 ACATTTGTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.05, G:0.12, T:0.37
Consensus pattern (20 bp):
TGTGTAATAAAAATAATACA
Found at i:79253051 original size:17 final size:17
Alignment explanation
Indices: 79253031--79253067 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
79253021 TATTTTATAT
79253031 TAATTAAATAAAGTAAA
1 TAATTAAATAAAGTAAA
*
79253048 TAATTAAATAAATTAAA
1 TAATTAAATAAAGTAAA
79253065 TAA
1 TAA
79253068 AGACAAGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
TAATTAAATAAAGTAAA
Found at i:79253170 original size:5 final size:5
Alignment explanation
Indices: 79253160--79253192 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
79253150 TTTAAGAATA
79253160 ATATT ATATT ATATT ATATT ATATT ATATT ATA
1 ATATT ATATT ATATT ATATT ATATT ATATT ATA
79253193 ATTAAAACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATATT
Found at i:79254463 original size:51 final size:53
Alignment explanation
Indices: 79254378--79254496 Score: 161
Period size: 51 Copynumber: 2.3 Consensus size: 53
79254368 AAGTGTTGCC
*
79254378 TTACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTACTC-CGTACC-TTACTG
1 TTACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTACTCGCGTACCGCTACTG
* * * * *
79254429 TTACTGTTACTGTTCTAGATTTGTTTCGATGAGGTACTCTGTGTACCGCTACTG
1 TTACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTACTC-GCGTACCGCTACTG
79254483 TTACTGTTACTGTT
1 TTACTGTTACTGTT
79254497 ACTTCTACTA
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
51 35 0.59
53 5 0.08
54 19 0.32
ACGTcount: A:0.18, C:0.21, G:0.20, T:0.41
Consensus pattern (53 bp):
TTACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTACTCGCGTACCGCTACTG
Found at i:79254489 original size:6 final size:6
Alignment explanation
Indices: 79254478--79254518 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
79254468 TGTGTACCGC
*
79254478 TACTGT TACTGT TACTGT TACT-T CTACTAT TACTGT TACTG
1 TACTGT TACTGT TACTGT TACTGT -TACTGT TACTGT TACTG
79254519 ATATGGTGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
5 1 0.03
6 30 0.94
7 1 0.03
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.49
Consensus pattern (6 bp):
TACTGT
Found at i:79254652 original size:18 final size:18
Alignment explanation
Indices: 79254629--79254734 Score: 81
Period size: 18 Copynumber: 5.8 Consensus size: 18
79254619 GTAAAAAAGG
79254629 TACTGAATAACTGACTGT
1 TACTGAATAACTGACTGT
* * *
79254647 TACTGAATAATTTATTGT
1 TACTGAATAACTGACTGT
* *
79254665 TACTAAAAAAAACTGA-TCGT
1 TACT--GAATAACTGACT-GT
*
79254685 TACTGAATAAATGACTGT
1 TACTGAATAACTGACTGT
* *
79254703 TACTGAATAGA-TGATTAT
1 TACTGAATA-ACTGACTGT
*
79254721 TACTGAAAAACTGA
1 TACTGAATAACTGA
79254735 TTATTATTGA
Statistics
Matches: 69, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
17 1 0.01
18 53 0.77
19 3 0.04
20 12 0.17
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (18 bp):
TACTGAATAACTGACTGT
Found at i:79255925 original size:37 final size:37
Alignment explanation
Indices: 79255865--79255936 Score: 119
Period size: 37 Copynumber: 1.9 Consensus size: 37
79255855 GGCTCAGATG
79255865 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
*
79255902 AAATCTCCACACGTAGTCT-TCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGT-TATCGGGTCTTACCCGGA
79255937 ATATATTTCC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
37 32 0.97
38 1 0.03
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
Found at i:79256135 original size:48 final size:48
Alignment explanation
Indices: 79256077--79256270 Score: 334
Period size: 48 Copynumber: 4.0 Consensus size: 48
79256067 ATATACACAC
* * *
79256077 ATCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
79256125 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
79256173 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATAAACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
79256221 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
79256269 AT
1 AT
79256271 ATTTATCTTG
Statistics
Matches: 137, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 137 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:79269462 original size:30 final size:31
Alignment explanation
Indices: 79269396--79269464 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
79269386 CACCCTTAAA
* * *
79269396 ATATTTACACTATTAGTCCTTCAGATTTTTC
1 ATATTTACACTATTAGCCCCTCAGAATTTTC
*
79269427 ATATTTACACT-TTAGCCCCTCA-AATTTTG
1 ATATTTACACTATTAGCCCCTCAGAATTTTC
79269456 AGTATTTAC
1 A-TATTTAC
79269465 TCTTCTGCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 6 0.18
30 16 0.48
31 11 0.33
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.45
Consensus pattern (31 bp):
ATATTTACACTATTAGCCCCTCAGAATTTTC
Found at i:79275739 original size:40 final size:40
Alignment explanation
Indices: 79275684--79275880 Score: 340
Period size: 40 Copynumber: 4.9 Consensus size: 40
79275674 GCATGAGCAT
79275684 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
79275724 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
79275764 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
79275804 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * * *
79275844 TTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
79275881 TTGCGGTTAT
Statistics
Matches: 149, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 149 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.24
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
Found at i:79283471 original size:40 final size:40
Alignment explanation
Indices: 79283416--79283612 Score: 304
Period size: 40 Copynumber: 4.9 Consensus size: 40
79283406 GCATGAGCAT
79283416 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
79283456 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * *
79283496 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
79283536 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * * * * *
79283576 TTGCTATACCCGAGTTAAGACCCAAAGGCAATTGTGC
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
79283613 TTGCGGTTAT
Statistics
Matches: 143, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
Found at i:79293158 original size:50 final size:48
Alignment explanation
Indices: 79293028--79293161 Score: 143
Period size: 50 Copynumber: 2.8 Consensus size: 48
79293018 ACATTTGGGC
*
79293028 GATATGTGTGTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTAT
1 GATATGTG-G-GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAG
* * *
79293076 GAGATGT-GTC-AGTATAAGACCATGTCTGGGACATGGCATCGGC-ACG
1 GATATGTGGGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-G
*
79293122 GATATGTGAGAGCTAGTGTAAGACCATGTCTAGGACATGG
1 GATATGTG-G-GCTAGTGTAAGACCATGTCTGGGACATGG
79293162 TGTCGGCCTC
Statistics
Matches: 71, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
44 8 0.11
45 16 0.23
46 15 0.21
48 7 0.10
49 1 0.01
50 24 0.34
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (48 bp):
GATATGTGGGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAG
Found at i:79296956 original size:39 final size:39
Alignment explanation
Indices: 79296913--79297046 Score: 193
Period size: 39 Copynumber: 3.5 Consensus size: 39
79296903 ATTCATTTTT
*
79296913 AAGCATATATCACATTACAT-ATATAATCACATAACATTC
1 AAGCATATATCACAATAC-TCATATAATCACATAACATTC
*
79296952 AAGC--ATATCACAATACTCATACAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
*
79296989 AAGCATATATCACAATACTCATATAATCACTTAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* *
79297028 AAGTATATATCACGATACT
1 AAGCATATATCACAATACT
79297047 AAAAAACATG
Statistics
Matches: 86, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
36 1 0.01
37 33 0.38
39 52 0.60
ACGTcount: A:0.45, C:0.22, G:0.04, T:0.29
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACATAACATTC
Found at i:79296978 original size:37 final size:37
Alignment explanation
Indices: 79296919--79297035 Score: 164
Period size: 37 Copynumber: 3.1 Consensus size: 37
79296909 TTTTAAGCAT
*
79296919 ATATCACATTACAT-ATATAATCACATAACATTCAAGC
1 ATATCACAATAC-TCATATAATCACATAACATTCAAGC
*
79296956 ATATCACAATACTCATACAATCACATAACATTCAAGC
1 ATATCACAATACTCATATAATCACATAACATTCAAGC
* *
79296993 ATATATCACAATACTCATATAATCACTTAACATTCAAGT
1 --ATATCACAATACTCATATAATCACATAACATTCAAGC
79297032 ATAT
1 ATAT
79297036 ATCACGATAC
Statistics
Matches: 72, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
36 1 0.01
37 37 0.51
39 34 0.47
ACGTcount: A:0.45, C:0.22, G:0.03, T:0.30
Consensus pattern (37 bp):
ATATCACAATACTCATATAATCACATAACATTCAAGC
Found at i:79297040 original size:22 final size:21
Alignment explanation
Indices: 79296975--79297040 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 21
79296965 TACTCATACA
*
79296975 ATCACATAACATTCAAGCATAT
1 ATCAC-TAACATTCAAGTATAT
* *
79296997 ATCAC-AATACTC-A-TATA-
1 ATCACTAACATTCAAGTATAT
79297014 ATCACTTAACATTCAAGTATAT
1 ATCAC-TAACATTCAAGTATAT
79297036 ATCAC
1 ATCAC
79297041 GATACTAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 10
0.69 0.10 0.20
Matches are distributed among these distances:
17 5 0.15
18 3 0.09
19 6 0.18
20 6 0.18
21 4 0.12
22 10 0.29
ACGTcount: A:0.44, C:0.23, G:0.03, T:0.30
Consensus pattern (21 bp):
ATCACTAACATTCAAGTATAT
Found at i:79314233 original size:21 final size:21
Alignment explanation
Indices: 79314207--79314252 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
79314197 AGGTACAGGG
79314207 CATTACTGTGCACGAACATGA
1 CATTACTGTGCACGAACATGA
79314228 CATTACTGTGCACGAACATGA
1 CATTACTGTGCACGAACATGA
79314249 CATT
1 CATT
79314253 TCTAGGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (21 bp):
CATTACTGTGCACGAACATGA
Found at i:79319476 original size:37 final size:37
Alignment explanation
Indices: 79319401--79319560 Score: 151
Period size: 37 Copynumber: 4.3 Consensus size: 37
79319391 TAGCATGAAT
* * * * *
79319401 ATCAGCGGCATAAAGCCTACTAGGCACATAGCCTGAA
1 ATCACCGGCACAAAGCCTACTAGGCACTTAACCCGAA
* * *
79319438 ATCACCTGCACAATGCCTGGC-AGGCACTTAACCCGAA
1 ATCACCGGCACAAAGCCT-ACTAGGCACTTAACCCGAA
* *
79319475 ATCACCGGCACAAAGCCTACTAGGCATTTAGCCCGAA
1 ATCACCGGCACAAAGCCTACTAGGCACTTAACCCGAA
** * * * *
79319512 ATCATTGACACAAAGCCTACTAGGCACATATCCTGAA
1 ATCACCGGCACAAAGCCTACTAGGCACTTAACCCGAA
*
79319549 ATCACCAGCACA
1 ATCACCGGCACA
79319561 TAACTAAATA
Statistics
Matches: 97, Mismatches: 24, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
36 1 0.01
37 95 0.98
38 1 0.01
ACGTcount: A:0.34, C:0.31, G:0.17, T:0.17
Consensus pattern (37 bp):
ATCACCGGCACAAAGCCTACTAGGCACTTAACCCGAA
Found at i:79319537 original size:74 final size:74
Alignment explanation
Indices: 79319401--79319560 Score: 180
Period size: 74 Copynumber: 2.2 Consensus size: 74
79319391 TAGCATGAAT
* * * * * *
79319401 ATCAGCGGCATAAAGCCTACTAGGCACATAGCCTGAAATCACCTGCACAATGCCTGGCAGGCACT
1 ATCACCGGCACAAAGCCTACTAGGCACATAGCCCGAAATCACCTGCACAAAGCCTGACAGGCACA
79319466 TAACCCGAA
66 TAACCCGAA
** *
79319475 ATCACCGGCACAAAGCCTACTAGGCATTTAGCCCGAAATCA-TTGACACAAAGCCT-ACTAGGCA
1 ATCACCGGCACAAAGCCTACTAGGCACATAGCCCGAAATCACCTG-CACAAAGCCTGAC-AGGCA
* *
79319538 CATATCCTGAA
64 CATAACCCGAA
*
79319549 ATCACCAGCACA
1 ATCACCGGCACA
79319561 TAACTAAATA
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
73 3 0.04
74 69 0.96
ACGTcount: A:0.34, C:0.31, G:0.17, T:0.17
Consensus pattern (74 bp):
ATCACCGGCACAAAGCCTACTAGGCACATAGCCCGAAATCACCTGCACAAAGCCTGACAGGCACA
TAACCCGAA
Found at i:79326478 original size:6 final size:6
Alignment explanation
Indices: 79326462--79326506 Score: 83
Period size: 6 Copynumber: 7.7 Consensus size: 6
79326452 ATTTATGTTA
79326462 TTTTC- TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
79326507 TATGTTTATT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
5 5 0.13
6 34 0.87
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTCT
Found at i:79331827 original size:16 final size:16
Alignment explanation
Indices: 79331806--79331838 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
79331796 TCTAAACTCA
79331806 AATTATGTTGAACCAT
1 AATTATGTTGAACCAT
79331822 AATTATGTTGAACCAT
1 AATTATGTTGAACCAT
79331838 A
1 A
79331839 TGTAGTTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (16 bp):
AATTATGTTGAACCAT
Found at i:79348745 original size:38 final size:38
Alignment explanation
Indices: 79348693--79348866 Score: 156
Period size: 37 Copynumber: 4.6 Consensus size: 38
79348683 TTACATTGGT
* *
79348693 ACAAAGCTTGCTAGGCATATAGCCCGAATATCACAGGC
1 ACAAAGCCTGCTAGGCACATAGCCCGAATATCACAGGC
* * *
79348731 ACAAAGCCTACTAGGCACATAGCCC-AAAATCACTGGC
1 ACAAAGCCTGCTAGGCACATAGCCCGAATATCACAGGC
* * * * *
79348768 AAAAAACCTGCTAGGCACATATCCTGAA-ATCACCGGC
1 ACAAAGCCTGCTAGGCACATAGCCCGAATATCACAGGC
* * * * *
79348805 ACAAAGGCTGCTAGACACATAGCCCAAATAACATTA-GC
1 ACAAAGCCTGCTAGGCACATAGCCCGAATATCA-CAGGC
* * *
79348843 ACAAATCCTGGTAGGCACAAAGCC
1 ACAAAGCCTGCTAGGCACATAGCC
79348867 TGGCAGACGC
Statistics
Matches: 107, Mismatches: 26, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
37 59 0.55
38 48 0.45
ACGTcount: A:0.38, C:0.29, G:0.18, T:0.16
Consensus pattern (38 bp):
ACAAAGCCTGCTAGGCACATAGCCCGAATATCACAGGC
Found at i:79348880 original size:54 final size:54
Alignment explanation
Indices: 79348802--79348920 Score: 150
Period size: 54 Copynumber: 2.2 Consensus size: 54
79348792 TGAAATCACC
* * * *
79348802 GGCACAAAGGCTGCTAGACACATAGCCCAAATAACATTAGCACAAATCCTGGTA
1 GGCACAAAGCCTGCTAGACACATAGCCCAAATAACATCAGCACAAAGCCTGCTA
* **
79348856 GGCACAAAGCCTGGC-AGACGCATAGCCTGAATAACATCAGCACAAAGCCTGCTA
1 GGCACAAAGCCT-GCTAGACACATAGCCCAAATAACATCAGCACAAAGCCTGCTA
*
79348910 GGCACATAGCC
1 GGCACAAAGCC
79348921 CTAAATCACT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 54 0.96
55 2 0.04
ACGTcount: A:0.36, C:0.29, G:0.21, T:0.14
Consensus pattern (54 bp):
GGCACAAAGCCTGCTAGACACATAGCCCAAATAACATCAGCACAAAGCCTGCTA
Found at i:79348918 original size:38 final size:38
Alignment explanation
Indices: 79348857--79348966 Score: 118
Period size: 37 Copynumber: 2.9 Consensus size: 38
79348847 ATCCTGGTAG
* *
79348857 GCACAAAGCCTGGC-AGACGCATAGCCTGAATAACATCA
1 GCACAAAGCCT-GCTAGGCACATAGCCTGAATAACATCA
* * *
79348895 GCACAAAGCCTGCTAGGCACATAGCCCTAAATCAC-TGA
1 GCACAAAGCCTGCTAGGCACATAG-CCTGAATAACATCA
* *
79348933 -CACAAAGCCTACTAGGCACATAGCCCGAATAACA
1 GCACAAAGCCTGCTAGGCACATAGCCTGAATAACA
79348967 CCACAGTTCT
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
36 7 0.12
37 24 0.40
38 21 0.35
39 8 0.13
ACGTcount: A:0.37, C:0.31, G:0.18, T:0.14
Consensus pattern (38 bp):
GCACAAAGCCTGCTAGGCACATAGCCTGAATAACATCA
Found at i:79356839 original size:29 final size:29
Alignment explanation
Indices: 79356779--79356839 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
79356769 TAGGGACCAG
* * **
79356779 ATCAAATTAGTCTTTCTATTATTAAATTA
1 ATCAAATTAGTCATTCTACTATTAAAAAA
* *
79356808 ATCAATTTAGTCATTGTACTATTAAAAAA
1 ATCAAATTAGTCATTCTACTATTAAAAAA
79356837 ATC
1 ATC
79356840 GAATAAGCTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.43
Consensus pattern (29 bp):
ATCAAATTAGTCATTCTACTATTAAAAAA
Found at i:79358516 original size:20 final size:20
Alignment explanation
Indices: 79358488--79358526 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
79358478 CTCTAATATA
79358488 TTTAAATTTAAATTTTAATC
1 TTTAAATTTAAATTTTAATC
* **
79358508 TTTATATTTTTATTTTAAT
1 TTTAAATTTAAATTTTAAT
79358527 ATAAATTAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTAAATTTAAATTTTAATC
Found at i:79358532 original size:32 final size:30
Alignment explanation
Indices: 79358486--79358545 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
79358476 CCCTCTAATA
* *
79358486 TATTTAAATTTAAATTTTAATCTTTATATTTT
1 TATTTAAATATAAA--TTAATCTCTATATTTT
*
79358518 TATTTTAATATAAATTAATCTCTATATT
1 TATTTAAATATAAATTAATCTCTATATT
79358546 GTTGAAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 13 0.52
32 12 0.48
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (30 bp):
TATTTAAATATAAATTAATCTCTATATTTT
Found at i:79361441 original size:88 final size:88
Alignment explanation
Indices: 79361348--79361623 Score: 229
Period size: 88 Copynumber: 3.1 Consensus size: 88
79361338 GGAGAAGAGA
* *
79361348 TTTGTAGCTTCGATCTACTTCGCTAAAACTTCAAGGAGTAAGAATTGGTAGTTTCAATCTGCTCC
1 TTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGGAGTAAGAATTGGTAGTTTCAATCTGCTCC
*
79361413 ACTACAACTTCGGGGAGATAAGG
66 ACTGCAACTTCGGGGAGATAAGG
* ** * * * * * *
79361436 TTTGTA-TTTTTATCCTACTCCACTGTAACTTC-AGAGAGATGAGGATT-GTGGCTTT-GATCTG
1 TTTGTAGCTTCGAT-CTACTCCGCTGAAACTTCAAG-GAG-TAAGAATTGGTAG-TTTCAATCTG
* * * ** *
79361497 CTCCAATGTAATTTTAGGGAGA-AGAGA
62 CTCCACTGCAACTTCGGGGAGATA-AGG
* * * * *
79361524 TTTGTAGCTTCGATCTACTCCGCTGGAATTTAAAAGAGGTAAGAATTGGTAGTTTCAACCTGCTC
1 TTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGGA-GTAAGAATTGGTAGTTTCAATCTGCTC
*
79361589 CACTGCAACTTCGAGGAGATAAGG
65 CACTGCAACTTCGGGGAGATAAGG
* *
79361613 TTGGTGGCTTC
1 TTTGTAGCTTC
79361624 AATTTTCTTC
Statistics
Matches: 137, Mismatches: 40, Indels: 21
0.69 0.20 0.11
Matches are distributed among these distances:
87 7 0.05
88 80 0.58
89 49 0.36
90 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (88 bp):
TTTGTAGCTTCGATCTACTCCGCTGAAACTTCAAGGAGTAAGAATTGGTAGTTTCAATCTGCTCC
ACTGCAACTTCGGGGAGATAAGG
Found at i:79361645 original size:177 final size:176
Alignment explanation
Indices: 79361321--79361646 Score: 447
Period size: 177 Copynumber: 1.8 Consensus size: 176
79361311 CTTCACTTTA
* * *
79361321 CTCCAAAGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTTCGCTAAAACTTCAAGGAG
1 CTCCAAAGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTAAAACTTAAAAGAG
* * * * **
79361386 TAAGAATTGGTAGTTTCAATCTGCTCCACTACAACTTCGGGGAGATAAGGTTTGTATTTTTATCC
66 TAAGAATTGGTAGTTTCAACCTGCTCCACTACAACTTCGAGGAGATAAGGTTGGTACTTCAATCC
*
79361451 TACTCCACTGTAACTTCAGAGAGATGAGGATTGTGGCTTTGATCTG
131 TACTCCACTGCAACTTCAGAGAGATGAGGATTGTGGCTTTGATCTG
* * ** *
79361497 CTCCAATGTAATTTTAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAATTTAAAAGAG
1 CTCCAAAGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTAAAACTTAAAAGA-
* *
79361562 GTAAGAATTGGTAGTTTCAACCTGCTCCACTGCAACTTCGAGGAGATAAGGTTGGTGGCTTCAAT
65 GTAAGAATTGGTAGTTTCAACCTGCTCCACTACAACTTCGAGGAGATAAGGTTGGT-ACTTCAAT
* * *
79361627 -TTTCTTCACTGCAACTTCAG
129 CCTACTCCACTGCAACTTCAG
79361647 GAAGATAAGA
Statistics
Matches: 128, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
176 56 0.44
177 68 0.53
178 4 0.03
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (176 bp):
CTCCAAAGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTAAAACTTAAAAGAG
TAAGAATTGGTAGTTTCAACCTGCTCCACTACAACTTCGAGGAGATAAGGTTGGTACTTCAATCC
TACTCCACTGCAACTTCAGAGAGATGAGGATTGTGGCTTTGATCTG
Found at i:79361783 original size:44 final size:45
Alignment explanation
Indices: 79361672--79361799 Score: 127
Period size: 45 Copynumber: 2.9 Consensus size: 45
79361662 CATTTTTGTA
* *
79361672 GCTTTAATTTGTTCCACTGCAACTTTAGGGAAATAAGATTCGCTAT
1 GCTTTAATTTGATCCACTGCAACTTTAGGGAGATAAGA-TCGCTAT
* * * * *
79361718 -CTTTAGTCTGCTCCGCTGCAACTTTAGGGAGATAAGA-C-TTAT
1 GCTTTAATTTGATCCACTGCAACTTTAGGGAGATAAGATCGCTAT
* * *
79361760 GGCTTTAATTTGATCCACTGCAACCTGAAGGAGATAAGAT
1 -GCTTTAATTTGATCCACTGCAACTTTAGGGAGATAAGAT
79361800 TTGCCATGAT
Statistics
Matches: 66, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
42 3 0.05
43 1 0.02
44 30 0.45
45 32 0.48
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (45 bp):
GCTTTAATTTGATCCACTGCAACTTTAGGGAGATAAGATCGCTAT
Found at i:79366280 original size:81 final size:85
Alignment explanation
Indices: 79366134--79366298 Score: 221
Period size: 81 Copynumber: 2.0 Consensus size: 85
79366124 GTTATGGAGG
** * * *
79366134 TGAAGGAAAAATCCCAAAGAATGAAAGAATCTAAGAATAATTATTTACATGGTATGATTATGAAT
1 TGAAGGAAAAATCCCAAAGAACAAAAGAATCTAAGAATAATTATTTACATAGTATAATTACGAAT
79366199 G-AAA-AATAAAAGAATATT
66 GAAAAGAATAAAAGAATATT
* * *
79366217 TGAAGG-AAAAT-CCAAAGAACAAAAGAATCTAAGAATAATTATTTGCGTAGTGTAATTACGAAT
1 TGAAGGAAAAATCCCAAAGAACAAAAGAATCTAAGAATAATTATTTACATAGTATAATTACGAAT
*
79366280 GAAAAGAATGAAAGAATAT
66 GAAAAGAATAAAAGAATAT
79366299 CTGCTCAAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
81 45 0.63
82 8 0.11
83 18 0.25
ACGTcount: A:0.52, C:0.07, G:0.17, T:0.25
Consensus pattern (85 bp):
TGAAGGAAAAATCCCAAAGAACAAAAGAATCTAAGAATAATTATTTACATAGTATAATTACGAAT
GAAAAGAATAAAAGAATATT
Found at i:79377264 original size:29 final size:29
Alignment explanation
Indices: 79377202--79377266 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
79377192 TTATAATTGA
* *
79377202 AAAATAAAAATAAAAAATAGTTAAATTTAG
1 AAAATAAAAATAAAAAATAG-AAAATTTAC
79377232 AAAA-AAAAATAAAAAACTA-AAAATTTCAC
1 AAAATAAAAATAAAAAA-TAGAAAATTT-AC
79377261 AAAATA
1 AAAATA
79377267 TTTAGAAGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
28 6 0.20
29 17 0.57
30 7 0.23
ACGTcount: A:0.71, C:0.05, G:0.03, T:0.22
Consensus pattern (29 bp):
AAAATAAAAATAAAAAATAGAAAATTTAC
Found at i:79377517 original size:11 final size:11
Alignment explanation
Indices: 79377498--79377530 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
79377488 AAATTTATTA
79377498 TTTTT-AATTT
1 TTTTTAAATTT
79377508 TTTTTAAATTT
1 TTTTTAAATTT
79377519 TTTTGTAAATTT
1 TTTT-TAAATTT
79377531 ATAGAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 5 0.24
11 9 0.43
12 7 0.33
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (11 bp):
TTTTTAAATTT
Found at i:79381296 original size:17 final size:18
Alignment explanation
Indices: 79381262--79381307 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
79381252 CCGTTATGTC
79381262 CGCGACCGCGA-C--AAA
1 CGCGACCGCGACCGAAAA
79381277 CGCGA-CGCGACCGAAAA
1 CGCGACCGCGACCGAAAA
79381294 CGCGACCGCGACCG
1 CGCGACCGCGACCG
79381308 CAATTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
17 8 0.30
18 8 0.30
ACGTcount: A:0.28, C:0.41, G:0.30, T:0.00
Consensus pattern (18 bp):
CGCGACCGCGACCGAAAA
Found at i:79382553 original size:33 final size:34
Alignment explanation
Indices: 79382457--79382554 Score: 98
Period size: 33 Copynumber: 2.9 Consensus size: 34
79382447 GTTAATATTT
*
79382457 TAATATATGAAATATAAATTTTAAATATTTTTAAGTAA
1 TAATATAT-AAA-ATATATTTTAAATA--TTTAAGTAA
*
79382495 TAA-ATAT-TAAT-TATTTATAAA-ATTTAAGTAA
1 TAATATATAAAATATATTT-TAAATATTTAAGTAA
79382526 -AATATATAAAATATATTTTAAATATTTAA
1 TAATATATAAAATATATTTTAAATATTTAA
79382555 ATATAACCTT
Statistics
Matches: 52, Mismatches: 3, Indels: 15
0.74 0.04 0.21
Matches are distributed among these distances:
30 2 0.04
31 13 0.25
32 7 0.13
33 16 0.31
34 6 0.12
35 1 0.02
37 4 0.08
38 3 0.06
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (34 bp):
TAATATATAAAATATATTTTAAATATTTAAGTAA
Found at i:79382780 original size:12 final size:13
Alignment explanation
Indices: 79382759--79382793 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
79382749 TTTTAACTTC
79382759 TTTTCAAAAGTGT
1 TTTTCAAAAGTGT
79382772 TTTTC-AAAGTGT
1 TTTTCAAAAGTGT
*
79382784 TTTTAAAAAG
1 TTTTCAAAAG
79382794 CTAAAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.34, C:0.06, G:0.14, T:0.46
Consensus pattern (13 bp):
TTTTCAAAAGTGT
Found at i:79383890 original size:5 final size:4
Alignment explanation
Indices: 79383865--79383904 Score: 53
Period size: 4 Copynumber: 9.5 Consensus size: 4
79383855 AGCAGAACAT
*
79383865 AAGA AAGA AAGA AAGAA AAGA GAAGA AAAA AAGA AAGA AA
1 AAGA AAGA AAGA AAG-A AAGA -AAGA AAGA AAGA AAGA AA
79383905 ATGTATTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 24 0.75
5 8 0.25
ACGTcount: A:0.78, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:79387787 original size:30 final size:30
Alignment explanation
Indices: 79387743--79387800 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
79387733 GTATGCGACC
* *
79387743 GCTCGGGCTATAGCTTGGGC-TCTGGCTCTG
1 GCTCGGCCTATAGC-TCGGCTTCTGGCTCTG
*
79387773 GCTCGGCCTCTAGCTCGGCTTCTGGCTC
1 GCTCGGCCTATAGCTCGGCTTCTGGCTC
79387801 GTATGCCTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.17
30 20 0.83
ACGTcount: A:0.05, C:0.33, G:0.33, T:0.29
Consensus pattern (30 bp):
GCTCGGCCTATAGCTCGGCTTCTGGCTCTG
Found at i:79396002 original size:54 final size:54
Alignment explanation
Indices: 79395925--79396061 Score: 211
Period size: 54 Copynumber: 2.5 Consensus size: 54
79395915 TATGTCGTCG
*
79395925 TAGGAGATTTAGCCTGGACTGGTAATCCCGACAATACTGTATGAGTTTATATTA
1 TAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTGTATGAGTTTATATTA
* * * *
79395979 TAGGGGATTTAGCCTGGATTGGTAATCCCGATAATACTTTCTGAGTTTATATTA
1 TAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTGTATGAGTTTATATTA
**
79396033 CGGGGGATTTAGCCTGGACTGGTAATCCC
1 TAGGGGATTTAGCCTGGACTGGTAATCCC
79396062 TCCGTAAGAT
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 75 1.00
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.34
Consensus pattern (54 bp):
TAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTGTATGAGTTTATATTA
Found at i:79403001 original size:49 final size:50
Alignment explanation
Indices: 79402925--79403058 Score: 155
Period size: 50 Copynumber: 2.7 Consensus size: 50
79402915 GAGGTAAATT
* * *
79402925 GCCGATGCCATGTCCCAAACATAGTCTTACACTGGTTATCAT-CAT-CGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGATTATCATACATCCG-G
* * * ** *
79402974 GCCGATGTCATGTCCCAGACATGGTCTTACACTAATTCTTGTACATCCGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGATTATCATACATCCGG
*
79403024 GCTGATGCCATGTCCCAGACATGGTCTTACACTGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA
79403059 CACATCTCAT
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
49 34 0.48
50 35 0.49
51 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (50 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGATTATCATACATCCGG
Found at i:79403169 original size:46 final size:48
Alignment explanation
Indices: 79402924--79403194 Score: 175
Period size: 46 Copynumber: 5.7 Consensus size: 48
79402914 CGAGGTAAAT
* * * * * *
79402924 TGCCGATGCCATGTCCCAAACATAGTCTTACACTGGTTA-TCATCATCGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CACTCGTC-TCAA
* * *** * **
79402973 GGCCGATGTCATGTCCCAGACATGGTCTTACACTAATTCTTGTACATCCG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGT-C-TCAA
* * *
79403023 TGCTGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTC-A
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCAA
* * * *
79403068 TAGTCAATG-CATGTCTCAGACAT-GTCTTACACTAGC-TTACGTCT-AGA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACT-CGTCTCA-A
* * *
79403115 GGCTGATG-CATGTCCTAGACAT-GTCTTACACTAGCACTCGTCTCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCAA
* *
79403161 TGCCGATGCCATGCCCCGGACATGGTCTTACACT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACT
79403195 GGCTCACACC
Statistics
Matches: 171, Mismatches: 39, Indels: 25
0.73 0.17 0.11
Matches are distributed among these distances:
44 10 0.06
45 15 0.09
46 51 0.30
47 15 0.09
48 13 0.08
49 32 0.19
50 35 0.20
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCAA
Found at i:79417880 original size:84 final size:84
Alignment explanation
Indices: 79417715--79417934 Score: 248
Period size: 84 Copynumber: 2.6 Consensus size: 84
79417705 ATTTTAAAAA
* * *
79417715 AAAAAAAGCAATTAAGCTCCCTTTTTTTTT-CAGTCACTTGAGTACTTCAACTTTCACAATCCAT
1 AAAAAAAGCAATTAAGCT-CCTTTTTTTTTGCACTCAATTG-GTACTTGAACTTTCACAATCCAT
*
79417779 AAAAAAACCCTCTAACTTTTTC
64 AAAAAAACCCTCAAAC-TTTTC
* *
79417801 AAAAAAAGCAATTAAACTCCTTTTTTTTTGCACTCAATTGGTACTTGAACTTTCA-AATGCATAA
1 AAAAAAAGCAATTAAGCTCCTTTTTTTTTGCACTCAATTGGTACTTGAACTTTCACAATCCATAA
**
79417865 AAAGGCCCTCAAACTTTTC
66 AAAAACCCTCAAACTTTTC
* * * * * *
79417884 -AAAAAAGTAATTGAGCCCCTACTTTTTTTGCACTAAATTGGGTCCTTGAAC
1 AAAAAAAGCAATTAAGCTCCT-TTTTTTTTGCACTCAATT-GGTACTTGAAC
79417935 CAACCCTAAT
Statistics
Matches: 116, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
82 16 0.14
83 21 0.18
84 29 0.25
85 25 0.22
86 25 0.22
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.34
Consensus pattern (84 bp):
AAAAAAAGCAATTAAGCTCCTTTTTTTTTGCACTCAATTGGTACTTGAACTTTCACAATCCATAA
AAAAACCCTCAAACTTTTC
Found at i:79417923 original size:83 final size:86
Alignment explanation
Indices: 79417715--79417934 Score: 225
Period size: 86 Copynumber: 2.6 Consensus size: 86
79417705 ATTTTAAAAA
* * * * * * *
79417715 AAAAAAAGCAATTAAGCTCCCT-TTTTTTTTCAGTCACTTGAGTACTTCAACTTTCACAATCCAT
1 AAAAAAAGCAATTAAAC-CCCTCTTTTTTTGCACTAAATTGGGTACTTGAACTTTCACAATCCAT
*
79417779 AAAAAAACCCTCTAACTTTTTC
65 AAAAAAACCCTCAAACTTTTTC
* * * *
79417801 AAAAAAAGCAATTAAACTCCTTTTTTTTTGCACTCAATT-GGTACTTGAACTTTCA-AATGCATA
1 AAAAAAAGCAATTAAACCCCTCTTTTTTTGCACTAAATTGGGTACTTGAACTTTCACAATCCATA
**
79417864 AAAAGGCCCTCAAAC-TTTTC
66 AAAAAACCCTCAAACTTTTTC
* * * *
79417884 -AAAAAAGTAATTGAGCCCCTACTTTTTTTGCACTAAATTGGGTCCTTGAAC
1 AAAAAAAGCAATTAAACCCCT-CTTTTTTTGCACTAAATTGGGTACTTGAAC
79417935 CAACCCTAAT
Statistics
Matches: 113, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
82 16 0.14
83 21 0.19
84 29 0.26
85 17 0.15
86 30 0.27
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.34
Consensus pattern (86 bp):
AAAAAAAGCAATTAAACCCCTCTTTTTTTGCACTAAATTGGGTACTTGAACTTTCACAATCCATA
AAAAAACCCTCAAACTTTTTC
Found at i:79418230 original size:10 final size:10
Alignment explanation
Indices: 79418215--79418342 Score: 65
Period size: 10 Copynumber: 13.2 Consensus size: 10
79418205 AAAAGAAGCA
79418215 TTTTATAATT
1 TTTTATAATT
*
79418225 TTTTATTA-T
1 TTTTATAATT
**
79418234 TTTTATAAAA
1 TTTTATAATT
*
79418244 TTTTATAATA
1 TTTTATAATT
*
79418254 TTTAAT-ATT
1 TTTTATAATT
*
79418263 TTTATATGA-T
1 TTT-TATAATT
79418273 TTTTAT-ATT
1 TTTTATAATT
*
79418282 TTTTCCTAATT
1 TTTT-ATAATT
* *
79418293 TTTAATAA-A
1 TTTTATAATT
79418302 TTTTA-AA-T
1 TTTTATAATT
*
79418310 TTTTATTAATA
1 TTTTA-TAATT
*
79418321 TTTAAT-ATT
1 TTTTATAATT
79418330 TTTTATAACTT
1 TTTTATAA-TT
79418341 TT
1 TT
79418343 ATTGATTATA
Statistics
Matches: 90, Mismatches: 17, Indels: 21
0.70 0.13 0.16
Matches are distributed among these distances:
8 8 0.09
9 32 0.36
10 35 0.39
11 15 0.17
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (10 bp):
TTTTATAATT
Found at i:79418239 original size:19 final size:19
Alignment explanation
Indices: 79418215--79418342 Score: 84
Period size: 19 Copynumber: 6.6 Consensus size: 19
79418205 AAAAGAAGCA
*
79418215 TTTTATAATTTTTTATTAT
1 TTTTATAATTTTTTATAAT
**
79418234 TTTTATAAAATTTTATAAT
1 TTTTATAATTTTTTATAAT
* *
79418253 ATTTA-ATATTTTTATATGAT
1 TTTTATA-ATTTTT-TATAAT
*
79418273 TTTTAT-ATTTTTTCCTAAT
1 TTTTATAATTTTTT-ATAAT
*
79418292 TTTTAATAA-ATTTTA-AAT
1 TTTT-ATAATTTTTTATAAT
* * *
79418310 TTTTATTAATATTTAATATT
1 TTTTA-TAATTTTTTATAAT
79418330 TTTTATAACTTTT
1 TTTTATAA-TTTT
79418343 ATTGATTATA
Statistics
Matches: 84, Mismatches: 15, Indels: 19
0.71 0.13 0.16
Matches are distributed among these distances:
17 1 0.01
18 12 0.14
19 45 0.54
20 25 0.30
21 1 0.01
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (19 bp):
TTTTATAATTTTTTATAAT
Found at i:79418248 original size:29 final size:28
Alignment explanation
Indices: 79418214--79418317 Score: 95
Period size: 29 Copynumber: 3.6 Consensus size: 28
79418204 TAAAAGAAGC
79418214 ATTTTATAATTTTTTATTATTTTTATAAA
1 ATTTTATAA-TTTTTATTATTTTTATAAA
* * *
79418243 ATTTTATAATATTTAATATTTTTATATGA
1 ATTTTATAATTTTTATTATTTTTATA-AA
* * * *
79418272 TTTTTATATTTTTTCCTAATTTTTA-ATAA
1 ATTTTATAATTTTT-ATTATTTTTATA-AA
79418301 ATTTTA-AATTTTTATTA
1 ATTTTATAATTTTTATTA
79418318 ATATTTAATA
Statistics
Matches: 59, Mismatches: 14, Indels: 6
0.75 0.18 0.08
Matches are distributed among these distances:
27 2 0.03
28 21 0.36
29 29 0.49
30 7 0.12
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.63
Consensus pattern (28 bp):
ATTTTATAATTTTTATTATTTTTATAAA
Found at i:79418274 original size:18 final size:19
Alignment explanation
Indices: 79418225--79418337 Score: 58
Period size: 18 Copynumber: 5.9 Consensus size: 19
79418215 TTTTATAATT
* *
79418225 TTTTATTATTTTTATAAAA
1 TTTTAATATTTTTATAATA
* *
79418244 TTTT-ATAATATT-TAATA
1 TTTTAATATTTTTATAATA
* *
79418261 TTTTTATATGATTTTTATATTT
1 -TTTTA-AT-ATTTTTATAATA
*
79418283 TTTCCTAAT-TTTTAATAA-A
1 TTT--TAATATTTTTATAATA
79418302 TTTTAA-ATTTTTATTAATA
1 TTTTAATATTTTTA-TAATA
79418321 -TTTAATATTTTTTATAA
1 TTTTAATA-TTTTTATAA
79418338 CTTTTATTGA
Statistics
Matches: 70, Mismatches: 12, Indels: 24
0.66 0.11 0.23
Matches are distributed among these distances:
17 12 0.17
18 17 0.24
19 12 0.17
20 15 0.21
21 7 0.10
22 5 0.07
23 2 0.03
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.63
Consensus pattern (19 bp):
TTTTAATATTTTTATAATA
Found at i:79419895 original size:22 final size:22
Alignment explanation
Indices: 79419836--79419910 Score: 59
Period size: 22 Copynumber: 3.5 Consensus size: 22
79419826 GATATTTTAA
**
79419836 AATATATATATATGTATATAC--
1 AATATATATA-AAATATATACAT
*
79419857 AATAGTATTTAAGAATATATACAT
1 AATA-TATATAA-AATATATACAT
*
79419881 AATATATATAAAATACAT--AT
1 AATATATATAAAATATATACAT
79419901 AATATATATA
1 AATATATATA
79419911 TACGTATTAG
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
20 12 0.27
21 5 0.11
22 18 0.40
23 6 0.13
24 4 0.09
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (22 bp):
AATATATATAAAATATATACAT
Found at i:79420589 original size:11 final size:11
Alignment explanation
Indices: 79420573--79420597 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
79420563 GTTTTGTATA
79420573 TATATTTTTAT
1 TATATTTTTAT
79420584 TATATTTTTAT
1 TATATTTTTAT
79420595 TAT
1 TAT
79420598 GATGTATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TATATTTTTAT
Found at i:79420650 original size:11 final size:11
Alignment explanation
Indices: 79420636--79420684 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
79420626 AAAAAAAGGA
79420636 AAAAATAAAAT
1 AAAAATAAAAT
79420647 AAAAATAAAAT
1 AAAAATAAAAT
* *
79420658 AAGAGTAAAAT
1 AAAAATAAAAT
* *
79420669 AATAAAGAAGAT
1 AA-AAATAAAAT
79420681 AAAA
1 AAAA
79420685 TCACCTTTGG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
11 24 0.77
12 7 0.23
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:79421840 original size:87 final size:91
Alignment explanation
Indices: 79421718--79421933 Score: 275
Period size: 90 Copynumber: 2.4 Consensus size: 91
79421708 GCGCGTGAGC
* * * *
79421718 CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAACT-TAACTTGAA-AAG-CAGA
1 CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAGAAGAAAAA
****
79421779 TTTTGAAAATACCTC-GATATGTGA-CT
66 AAAAG-AAATACCTCAG-TATGTGATCT
79421805 CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAGAAGAAAAA
1 CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAGAAGAAAAA
*
79421870 AAAAGAAATACCTCAGTGTGTGATCT
66 AAAAGAAATACCTCAGTATGTGATCT
*
79421896 GAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
79421934 TTGAAAGAAA
Statistics
Matches: 113, Mismatches: 10, Indels: 9
0.86 0.08 0.07
Matches are distributed among these distances:
87 40 0.35
88 4 0.04
89 8 0.07
90 53 0.47
91 8 0.07
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.30
Consensus pattern (91 bp):
CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAGAAGAAAAA
AAAAGAAATACCTCAGTATGTGATCT
Found at i:79422155 original size:77 final size:77
Alignment explanation
Indices: 79422028--79422202 Score: 260
Period size: 77 Copynumber: 2.3 Consensus size: 77
79422018 AACGCAGAAA
* * * * * **
79422028 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
*
79422093 GAGTTGATTTTT
66 GAGTCGATTTTT
*
79422105 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
79422170 GAGTCGATTTTT
66 GAGTCGATTTTT
*
79422182 TTGAAAGGCAGAAATTGAAAA
1 TTGAAAGACAGAAATTGAAAA
79422203 ACGAAAATTG
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
77 88 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (77 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
GAGTCGATTTTT
Found at i:79422200 original size:91 final size:89
Alignment explanation
Indices: 79422116--79422290 Score: 237
Period size: 91 Copynumber: 1.9 Consensus size: 89
79422106 TGAAAGACAG
* * *
79422116 AAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTCGATTT
1 AAATTGAAAATACCTCAGCGCATGA-CCTAAGGCTCAACTCACCGCTCGCAATATGAGTCGA-TT
79422180 TTTTGA-AAGGCAGAAATTGAAAAACGA
64 TTTTGACAA--CAGAAATTGAAAAACGA
* * * *
79422207 AAATTGAAAATACCTCAGCGTATGACCTGAGGCTCAACTCGCCGCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGCATGACCTAAGGCTCAACTCACCGCTCGCAATATGAGTCGATTTT
79422272 TTGACAACAGAAATTGAAA
66 TTGACAACAGAAATTGAAA
79422291 TTACCTCAGC
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
89 12 0.16
90 10 0.13
91 53 0.71
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (89 bp):
AAATTGAAAATACCTCAGCGCATGACCTAAGGCTCAACTCACCGCTCGCAATATGAGTCGATTTT
TTGACAACAGAAATTGAAAAACGA
Found at i:79422329 original size:73 final size:74
Alignment explanation
Indices: 79422207--79423073 Score: 364
Period size: 76 Copynumber: 10.9 Consensus size: 74
79422197 TGAAAAACGA
*
79422207 AAATTGAAAATACCTCAGCGTATGACCTGAGGCTCAACTCGCCGCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCG-ATGACCTGAGGCTCAACTCACCGCTCGCAATATGAGTTGATTTT
79422272 TTGACAACAG
65 TTGACAACAG
* * * *
79422282 AAATTGAAATTACCTCAGCG-TGTCCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCGATGACCTGAGGCTCAACTCACCGCTCGCAATATGAGTTGA--TTT
*
79422346 TTTTA-AAGGCAG
64 TTTGACAA--CAG
*** ** * * *
79422358 AAATTGAAAA-ACGAAAATTGAAAAT-ACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGC
1 AAATTGAAAATAC-CTCA--G-CGATGACCT----GAG-G--CT----C-A-ACTCACCGCTCGC
*
79422421 AATACGAGTTGATTTTTTTGACAACAG
49 AATATGAGTTGA-TTTTTTGACAACAG
* * *
79422448 AAATTGAAATTACCTCAGCG-TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCGATGACCTGAGGCTCAACTCACCGCTCGCAATATGAGTTGA--TTT
79422512 TTTGA-AAGGCAG
64 TTTGACAA--CAG
** * ** * * *
79422524 AAATTGAAAAATGGAAATTTA-AAAT-ACCTCAGCGTGTGACCTGAGGCTCAACTCGCCGCTCGC
1 AAATTG-AAAAT---ACCTCAGCGATGACCT----GAG-G--CT----C-A-ACTCACCGCTCGC
** * **
79422587 AATACAAGTTGATTTTTTGAAAATTG
49 AATATGAGTTGATTTTTTGACAACAG
* * *
79422613 AAATTGAAATTACCTCAGCG-TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCGATGACCTGAGGCTCAACTCACCGCTCGCAATATGAGTTGA--TTT
79422677 TTTGA-AAGGCAG
64 TTTGACAA--CAG
** * ** * * *
79422689 AAATTGAAAATGGAAAT-TGAAAT-ACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAA
1 AAATTGAAAAT--ACCTCAGCGATGACCT----GAG-G--CTCA-ACTC-AC-CG---CTCGCAA
*
79422752 TACGAGTTGATTTTTTTTGACAACAG
51 TATGAGTTGA--TTTTTTGACAACAG
* *
79422778 AAATTGAAAATACCTCAGCG-TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCGATGACCTGAGGCTCAACTCACCGCTCGCAATATGAGTTGATTTTT
*
79422842 TGAAACATACGAA
66 TG--ACA-AC-AG
* * * * * *
79422855 AAATTGACAATACCTCAACG-TGTCCCGAGGCTCAACTCACCTCACCTCTCGCAATACGAGTTGA
1 AAATTGAAAATACCTCAGCGATGACCTGAGGCTC-A---A-CTCACCGCTCGCAATATGAGTTGA
79422919 TTTTTTTGACAACAG
61 -TTTTTTGACAACAG
* *
79422934 AAATTGAAAATACCTCAGC-ATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
1 AAATTGAAAATACCTCAGCGATGACCTGAGGCTCAACTCACCGCTCGCAATATGAGTTGATTTTT
*
79422997 TGAAACATACAAA
66 TG--ACA-AC-AG
* * * * *
79423010 AAATTGACAATACCTCAGCG-TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGAATTTT
1 AAATTGAAAATACCTCAGCGATGACCTGAGGCTCAACTCACCGCTCGCAATATGAGTTGATTTTT
79423074 GAAATAAAAC
Statistics
Matches: 605, Mismatches: 98, Indels: 176
0.69 0.11 0.20
Matches are distributed among these distances:
72 6 0.01
73 63 0.10
74 54 0.09
75 68 0.11
76 93 0.15
77 43 0.07
78 7 0.01
79 40 0.07
80 12 0.02
81 10 0.02
82 27 0.04
83 14 0.02
84 7 0.01
85 7 0.01
86 10 0.02
87 7 0.01
88 9 0.01
89 21 0.03
90 48 0.08
91 14 0.02
92 45 0.07
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (74 bp):
AAATTGAAAATACCTCAGCGATGACCTGAGGCTCAACTCACCGCTCGCAATATGAGTTGATTTTT
TGACAACAG
Found at i:79422450 original size:90 final size:89
Alignment explanation
Indices: 79422282--79422456 Score: 237
Period size: 92 Copynumber: 1.9 Consensus size: 89
79422272 TTGACAACAG
* * * *
79422282 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTT
*
79422347 TTTAAAGGCAGAAATTGAAAAACGA
66 TTGAAA-GCAGAAATTGAAAAACGA
* *
79422372 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGA-TTT
1 AAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTT
79422436 TTTTGACAA-CAGAAATTGAAA
64 TTTTGA-AAGCAGAAATTGAAA
79422457 TTACCTCAGC
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
90 33 0.44
91 8 0.11
92 34 0.45
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (89 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTT
TTGAAAGCAGAAATTGAAAAACGA
Found at i:79422451 original size:166 final size:166
Alignment explanation
Indices: 79421807--79422997 Score: 1500
Period size: 165 Copynumber: 7.2 Consensus size: 166
79421797 ATGTGACTCA
*** * *
79421807 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAAAATATAAATTGAAGAA-GAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGAAAAACG-AA
*** * * * * *
79421868 AAAAAAGAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
65 AATTGA-AAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
* * * * *
79421933 TTTGAAAGAAAGAAATTGAAAATAGCTCAGCGCGTGAGCC-A
129 TTTGACA-ACAGAAATTGAAAATACCTCA--GCGTG-TCCTG
* * * * *
79421974 AGGCTCAACTCACCTATCGTAATATGAGTCGATTTTTTTTTTGAAACGCAGAAATTGAAAAACGG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTTGAAAGGCAGAAATTGAAAAACGA
* * * *
79422039 AAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
64 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
* * * *
79422104 TTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-A
129 TTTGACA-ACAGAAATTGAAAATACCTCA--GCGTG-TCCTG
*
79422145 AGGCTCAACTCACCTCTCGCAATATGAGTCGA-TTTTTTTGAAAGGCAGAAATTGAAAAACGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGAAAAACGAAA
* * *
79422209 ATTGAAAATACCTCAGCGTATGACCTGAGGCTCAACTCGCCGCTCGCAATATGAGTTGA-TTTTT
66 ATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTT
*
79422273 TGACAACAGAAATTGAAATTACCTCAGCGTGTCCTG
131 TGACAACAGAAATTGAAAATACCTCAGCGTGTCCTG
* *
79422309 AGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAGGCAGAAATTGAAAAACGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGAAAAACGAAA
* *
79422374 ATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTT
66 ATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTT
*
79422439 TGACAACAGAAATTGAAATTACCTCAGCGTGTCCTG
131 TGACAACAGAAATTGAAAATACCTCAGCGTGTCCTG
* *
79422475 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGAAAAATGGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGAAAAACGAAA
* * *
79422540 ATTTAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACAAGTTGA-TTTTT
66 ATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTT
* ** *
79422604 TGAAAATTGAAATTGAAATTACCTCAGCGTGTCCTG
131 TGACAACAGAAATTGAAAATACCTCAGCGTGTCCTG
* *
79422640 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTG-AAAATGGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGAAAAACGAAA
*
79422704 ATTG-AAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTT
66 ATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGA-TTTTT
79422768 TTGACAACAGAAATTGAAAATACCTCAGCGTGTCCTG
130 TTGACAACAGAAATTGAAAATACCTCAGCGTGTCCTG
79422805 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTGAAA--C----A-T-----ACGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGAAAAACG-AA
* * * *
79422856 AATTGACAATACCTCAACGTGT--CCCGAGGCTCAACTCACCTCACCTCTCGCAATACGAGTTGA
65 AATTGAAAATACCTCAGCGTGTGACCTGAGGCTC-A---A-CTCGCCTCTCGCAATACGAGTTGA
*
79422919 TTTTTTTGACAACAGAAATTGAAAATACCTCAGCATGTCCTG
125 TTTTTTTGACAACAGAAATTGAAAATACCTCAGCGTGTCCTG
79422961 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
79422998 GAAACATACA
Statistics
Matches: 942, Mismatches: 62, Indels: 49
0.89 0.06 0.05
Matches are distributed among these distances:
152 11 0.01
153 7 0.01
154 13 0.01
156 75 0.08
157 24 0.03
158 3 0.00
161 1 0.00
163 63 0.07
164 47 0.05
165 249 0.26
166 177 0.19
167 38 0.04
168 84 0.09
171 125 0.13
172 24 0.03
173 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (166 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGAAAAACGAAA
ATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTT
TGACAACAGAAATTGAAAATACCTCAGCGTGTCCTG
Found at i:79422514 original size:76 final size:75
Alignment explanation
Indices: 79422372--79423060 Score: 375
Period size: 76 Copynumber: 8.7 Consensus size: 75
79422362 TGAAAAACGA
* *
79422372 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTT
79422437 TTTGACAA-CAG
65 TTTGA-AAGCAG
* * *
79422448 AAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGA-TTTT
79422512 TTTGAAAGGCAG
65 TTTGAAA-GCAG
** * *** * * * * * *
79422524 AAATTGAAAAATGGAAATTTAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAA
1 AAATTG-AAAAT---ACCTCAGCGT--GT-A-CCTGAG-GCTCA-ACTC-A----CCGCTCGCAA
* ***
79422589 TACAAGTTGA-TTTTTTGAAAATTG
51 TACGAGTTGATTTTTTTGAAAGCAG
* * *
79422613 AAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGA-TTTT
79422677 TTTGAAAGGCAG
65 TTTGAAA-GCAG
* ** ** * * * *
79422689 AAATTGAAAATGGAAATTGAAATACCTCGGCGTGTGAC-CTGAG-GCTCAACTCGCCTCTCGCAA
1 AAA-T-----T-G--A---AAATACCTCAGCGTGTACCTGAG-GCTC-A-ACTCACCGCTCGCAA
79422752 TACGAGTTGATTTTTTTTGACAA-CAG
51 TACGAGTTGA-TTTTTTTGA-AAGCAG
* *
79422778 AAATTGAAAATACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
1 AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTT
79422841 TTGAAA-CATACG
66 TTGAAAGC--A-G
* * * *
79422853 AAAAATTGACAATACCTCAACGTGT-CCCGAGGCTCAACTCACCTCACCTCTCGCAATACGAGTT
1 --AAATTGAAAATACCTCAGCGTGTACCTGAGGCTC-A---A-CTCACCGCTCGCAATACGAGTT
79422917 GATTTTTTTGACAA-CAG
59 GATTTTTTTGA-AAGCAG
* * *
79422934 AAATTGAAAATACCTCAGCATGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTT
1 AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTT
* *
79422996 TTGAAACATACAAA
66 TTG-AA-A-GC-AG
* *
79423010 AAATTGACAATACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATA
1 AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATA
79423061 TGAATTGAAT
Statistics
Matches: 483, Mismatches: 72, Indels: 116
0.72 0.11 0.17
Matches are distributed among these distances:
72 10 0.02
73 27 0.06
74 59 0.12
75 45 0.09
76 86 0.18
77 53 0.11
78 5 0.01
79 32 0.07
80 9 0.02
81 2 0.00
82 27 0.06
83 11 0.02
84 3 0.01
85 9 0.02
86 3 0.01
87 3 0.01
88 22 0.05
89 15 0.03
90 43 0.09
91 2 0.00
92 17 0.04
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (75 bp):
AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTT
TTGAAAGCAG
Found at i:79422618 original size:331 final size:329
Alignment explanation
Indices: 79421807--79422997 Score: 1547
Period size: 331 Copynumber: 3.6 Consensus size: 329
79421797 ATGTGACTCA
*** * * *
79421807 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAATATAAATTGAAGAAGAAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGGCAGAAATTGAAAAAG-AAAAT
** * * * * *
79421871 AAAGAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
65 TGA-AAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTTT
* * * * * *
79421936 GAAAGAAAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTATCGTAATATG
129 GAAA-ACAGAAATTGAAAATACCTCA--GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATG
* * *
79422000 AGTCGATTTTTTTTTTGAAACGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGAT
190 AGTTGA-TTTTTTTTT-AAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGAC
* * * *
79422065 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGC
253 CTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACA-ACAGAAATTGAAAATACC
* *
79422130 TCAGCGCGTGAGCC-A
317 TCA--GCGTG-TCCTG
*
79422145 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGGCAGAAATTGAAAAACGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGGCAGAAATTGAAAAA-GAAAA
* * *
79422210 TTGAAAATACCTCAGCGTATGACCTGAGGCTCAACTCGCCGCTCGCAATATGAGTTGA-TTTTTT
64 TTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTTT
* * *
79422274 GACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTTAACTCACCTCTCGCAATATGAGTT
129 GAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
79422339 GATTTTTTTTTAAAGGCAGAAATTGAAAAACGAAAATTGAAAATACCTCGGCGTGTGACCTGAGG
194 GATTTTTTTTTAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGG
* *
79422404 CTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGT
259 CTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAAATACCTCAGCGT
79422469 GTCCTG
324 GTCCTG
*
79422475 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGAAAAATGGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTGAAAGGCAGAAATTGAAAAA-GAAA
* * *
79422540 ATTTAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACAAGTTGA-TTTTT
63 ATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTT
** *
79422604 TGAAAATTGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
128 TGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
79422669 TGATTTTTTTTGAAAGGCAGAAATTG-AAAATGGAAATTG-AAATACCTCGGCGTGTGACCTGAG
193 TGATTTTTTTTTAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAG
79422732 GCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTTGACAACAGAAATTGAAAATACCTCAGC
258 GCTCAACTCGCCTCTCGCAATACGAGTTGA-TTTTTTTGACAACAGAAATTGAAAATACCTCAGC
79422797 GTGTCCTG
322 GTGTCCTG
**
79422805 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA--C----A-T--ACGA-AAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGGCAGAAATTGAAAAAGAAAATT
* * * *
79422860 GACAATACCTCAACGTGT--CCCGAGGCTCAACTCACCTCACCTCTCGCAATACGAGTTGATTTT
66 GAAAATACCTCAGCGTGTGACCTGAGGCTC-A---A-CTCACCGCTCGCAATACGAGTTGATTTT
* *
79422923 TTTGACAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
126 TTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
79422988 GTTGATTTTT
191 GTTGATTTTT
79422998 GAAACATACA
Statistics
Matches: 773, Mismatches: 67, Indels: 43
0.88 0.08 0.05
Matches are distributed among these distances:
315 9 0.01
316 1 0.00
317 20 0.03
319 3 0.00
320 21 0.03
321 74 0.10
322 1 0.00
326 1 0.00
328 10 0.01
329 55 0.07
330 120 0.16
331 176 0.23
332 19 0.02
333 87 0.11
334 11 0.01
335 33 0.04
337 18 0.02
338 40 0.05
339 48 0.06
340 25 0.03
341 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (329 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGGCAGAAATTGAAAAAGAAAATT
GAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTTTGA
AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTTTAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCT
CAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAAATACCTCAGCGTGT
CCTG
Found at i:79422759 original size:90 final size:88
Alignment explanation
Indices: 79422603--79422788 Score: 286
Period size: 90 Copynumber: 2.1 Consensus size: 88
79422593 AGTTGATTTT
* *
79422603 TTGAAAATTGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAATGGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAG
79422668 TTGATTTTTTTTGA-AAGGCAGAAA
66 TTGATTTTTTTTGACAA--CAGAAA
* *
79422692 TTGAAAATGGAAATTGAAA-TACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACG
1 TTGAAAATGGAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATACG
79422756 AGTTGATTTTTTTTGACAACAGAAA
64 AGTTGATTTTTTTTGACAACAGAAA
79422781 TTGAAAAT
1 TTGAAAAT
79422789 ACCTCAGCGT
Statistics
Matches: 90, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
88 12 0.13
89 32 0.36
90 44 0.49
91 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (88 bp):
TTGAAAATGGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAG
TTGATTTTTTTTGACAACAGAAA
Found at i:79422974 original size:156 final size:156
Alignment explanation
Indices: 79422733--79423052 Score: 570
Period size: 156 Copynumber: 2.1 Consensus size: 156
79422723 TGACCTGAGG
* * *
79422733 CTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTTGACAACAGAAATTGAAAATACCTCAGCG
1 CTCACCTCACCTCTCGCAATACGAGTTGATTTTTTTTGACAACAGAAATTGAAAATACCTCAGCA
*
79422798 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACATACGAAAAATTGAC
66 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAACATACAAAAAATTGAC
79422863 AATACCTCAACGTGTCCCGAGGCTCAA
130 AATACCTCAACGTGTCCCGAGGCTCAA
79422890 CTCACCTCACCTCTCGCAATACGAGTTGA-TTTTTTTGACAACAGAAATTGAAAATACCTCAGCA
1 CTCACCTCACCTCTCGCAATACGAGTTGATTTTTTTTGACAACAGAAATTGAAAATACCTCAGCA
79422954 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATACAAAAAATTGACA
66 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATACAAAAAATTGACA
* *
79423019 ATACCTCAGCGTGTCCTGAGGCTCAA
131 ATACCTCAACGTGTCCCGAGGCTCAA
79423045 CTCACCTC
1 CTCACCTC
79423053 TCGCAATATG
Statistics
Matches: 157, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
155 57 0.36
156 73 0.46
157 27 0.17
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (156 bp):
CTCACCTCACCTCTCGCAATACGAGTTGATTTTTTTTGACAACAGAAATTGAAAATACCTCAGCA
TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATACAAAAAATTGACA
ATACCTCAACGTGTCCCGAGGCTCAA
Found at i:79423061 original size:76 final size:74
Alignment explanation
Indices: 79422702--79423077 Score: 457
Period size: 76 Copynumber: 4.9 Consensus size: 74
79422692 TTGAAAATGG
* * *
79422702 AAATTG-AAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
*** *
79422766 TTTTGACAACAG
63 TTGAAACAACAA
79422778 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
79422843 GAAACATACGAA
65 GAAACA-AC-AA
* * * *
79422855 AAATTGACAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCACCTCTCGCAATACGAGTTGAT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTC-A---A-CTCACCTCTCGCAATATGAGTTGAT
*** *
79422920 TTTTTTGACAACAG
61 TTTTGAAACAACAA
*
79422934 AAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
79422999 AAACATACAAA
66 AAACA-AC-AA
* * *
79423010 AAATTGACAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATTGAATTTTG
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
79423075 AAA
66 AAA
79423078 TAAAACATCA
Statistics
Matches: 262, Mismatches: 28, Indels: 20
0.85 0.09 0.06
Matches are distributed among these distances:
74 31 0.12
75 46 0.18
76 73 0.28
77 46 0.18
78 2 0.01
79 30 0.11
80 2 0.01
81 9 0.03
82 23 0.09
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (74 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAACAACAA
Found at i:79435359 original size:33 final size:32
Alignment explanation
Indices: 79435280--79435390 Score: 79
Period size: 31 Copynumber: 3.5 Consensus size: 32
79435270 ACATATGTAC
* * *
79435280 ATAAAATATACACTAATATAATAA-TAGTTATA
1 ATAATATATACAC-AATATAATAATTTGTAATA
* *
79435312 ATAATA-CTA-GCAATAGTAATAATTTGTAATA
1 ATAATATATACACAATA-TAATAATTTGTAATA
** *
79435343 ATAATATATACACAATATGGT-ATTT-TAAAA
1 ATAATATATACACAATATAATAATTTGTAATA
*
79435373 ATATATATATATACAATA
1 ATA-ATATATACACAATA
79435391 GTATTTAAGA
Statistics
Matches: 63, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
29 4 0.06
30 14 0.22
31 31 0.49
32 9 0.14
33 5 0.08
ACGTcount: A:0.52, C:0.06, G:0.05, T:0.36
Consensus pattern (32 bp):
ATAATATATACACAATATAATAATTTGTAATA
Found at i:79435389 original size:31 final size:29
Alignment explanation
Indices: 79435333--79435407 Score: 82
Period size: 31 Copynumber: 2.6 Consensus size: 29
79435323 AATAGTAATA
*
79435333 ATTTGTAATAATA-ATATATACACAATATGGT
1 ATTT-TAAAAATATATATATACACAATA--GT
*
79435364 ATTTTAAAAATATATATATATACAATAGT
1 ATTTTAAAAATATATATATACACAATAGT
*
79435393 A-TTTAAGAATATATA
1 ATTTTAAAAATATATA
79435408 CATAAGATGA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
28 13 0.32
29 3 0.08
30 7 0.17
31 17 0.43
ACGTcount: A:0.49, C:0.04, G:0.07, T:0.40
Consensus pattern (29 bp):
ATTTTAAAAATATATATATACACAATAGT
Found at i:79435499 original size:11 final size:11
Alignment explanation
Indices: 79435468--79435516 Score: 53
Period size: 11 Copynumber: 4.2 Consensus size: 11
79435458 TAATGGCATT
79435468 TAAATATATATA
1 TAAA-ATATATA
79435480 TACATAATATATA
1 TA-A-AATATATA
*
79435493 TAAAATACATA
1 TAAAATATATA
*
79435504 TAATATATATA
1 TAAAATATATA
79435515 TA
1 TA
79435517 CGTATTAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
11 18 0.56
12 3 0.09
13 10 0.31
14 1 0.03
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (11 bp):
TAAAATATATA
Found at i:79436197 original size:11 final size:11
Alignment explanation
Indices: 79436166--79436205 Score: 55
Period size: 11 Copynumber: 3.5 Consensus size: 11
79436156 TTTTTTTAAA
79436166 TATT-TATTTT
1 TATTATATTTT
79436176 GTATATATATTTT
1 -TAT-TATATTTT
79436189 TATTATATTTT
1 TATTATATTTT
79436200 TATTAT
1 TATTAT
79436206 GATGTATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
11 17 0.63
12 4 0.15
13 6 0.22
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (11 bp):
TATTATATTTT
Found at i:79436213 original size:29 final size:29
Alignment explanation
Indices: 79436155--79436216 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 29
79436145 GGAAAAGGTA
*
79436155 ATTTTTTTAAATATTTATTTTGTATATAT
1 ATTTTTTTAAATATTTATTATGTATATAT
* * *
79436184 ATTTTTATTATATTTTTATTATGATGTATAT
1 ATTTTT-TTAAATATTTATTATG-TATATAT
79436215 AT
1 AT
79436217 ATAGATTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 6 0.22
30 13 0.48
31 8 0.30
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.65
Consensus pattern (29 bp):
ATTTTTTTAAATATTTATTATGTATATAT
Found at i:79443038 original size:6 final size:6
Alignment explanation
Indices: 79443027--79443051 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
79443017 CTTGATGGGT
79443027 TTGGAG TTGGAG TTGGAG TTGGAG T
1 TTGGAG TTGGAG TTGGAG TTGGAG T
79443052 AGTATGATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.48, T:0.36
Consensus pattern (6 bp):
TTGGAG
Found at i:79443575 original size:6 final size:6
Alignment explanation
Indices: 79443564--79443590 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
79443554 CAAAGCTTTT
79443564 ACTCAC ACTCAC ACTCAC ACTCAC ACT
1 ACTCAC ACTCAC ACTCAC ACTCAC ACT
79443591 TGTTTAAGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.48, G:0.00, T:0.19
Consensus pattern (6 bp):
ACTCAC
Found at i:79445481 original size:63 final size:60
Alignment explanation
Indices: 79445405--79445530 Score: 137
Period size: 59 Copynumber: 2.0 Consensus size: 60
79445395 TATTGATGTT
* * * *
79445405 TTTAAGTATTTTTCACATATATAGTTATAGCCTAATTTTTAGTTTCTTTATAAACTATATA-TA
1 TTTAAATAATTTTCAC-T-TATAGTTATA--ATAATTTTTAGTTTCTTAATAAACTATATATTA
* ** *
79445468 TTTAAATAATTTTCACTTATATTTATAATTTTTTTTAGTTTCTTAATAAATTATATATTA
1 TTTAAATAATTTTCACTTATAGTTATAATAATTTTTAGTTTCTTAATAAACTATATATTA
79445528 TTT
1 TTT
79445531 TGGTCAAAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
59 25 0.46
60 5 0.09
61 9 0.17
62 1 0.02
63 14 0.26
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (60 bp):
TTTAAATAATTTTCACTTATAGTTATAATAATTTTTAGTTTCTTAATAAACTATATATTA
Found at i:79463117 original size:26 final size:26
Alignment explanation
Indices: 79463087--79463140 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
79463077 ACTTTTTAAG
*
79463087 TAATTAATAC-AAATTATTTGTAAAAT
1 TAATT-ATACAAAAATATTTGTAAAAT
*
79463113 TAATTATACATAAAATATTTTTAAAAT
1 TAATTATACA-AAAATATTTGTAAAAT
79463140 T
1 T
79463141 TAAATAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 4 0.17
26 5 0.21
27 15 0.62
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (26 bp):
TAATTATACAAAAATATTTGTAAAAT
Found at i:79469642 original size:46 final size:47
Alignment explanation
Indices: 79469577--79469896 Score: 328
Period size: 46 Copynumber: 6.7 Consensus size: 47
79469567 TTATCTTTGA
* * * * *
79469577 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
79469623 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
* * **
79469669 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
**
79469715 CATGTTGCCATGGTATCTTTCAACCATGGTCAACCATGGTCTTATTCA-TTTCCCGT
1 CATGTTGCCATGGTATC--T------T--TCAACCATGGTCTTATTCATTTTCATGT
* * *
79469771 CATGTTGCCATGGTATCTCTCAACCATGGTCCTATTCA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
* ** *
79469817 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
* *
79469863 CAGGTTGCCATGTTATCTTTCAACCATGGTCTTA
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA
79469897 CACATTTCAT
Statistics
Matches: 241, Mismatches: 22, Indels: 22
0.85 0.08 0.08
Matches are distributed among these distances:
45 4 0.02
46 190 0.79
48 1 0.00
54 2 0.01
56 44 0.18
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.39
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
Found at i:79469728 original size:30 final size:30
Alignment explanation
Indices: 79469692--79469784 Score: 83
Period size: 30 Copynumber: 3.2 Consensus size: 30
79469682 TATCTTTCAA
79469692 CCATGGTCTTATTCATTTCCCGTCATGTTG
1 CCATGGTCTTATTCATTTCCCGTCATGTTG
* **
79469722 CCATGG---TA-TC-TTTCAAC--CATGGTCAA
1 CCATGGTCTTATTCATTTC-CCGTCAT-GT-TG
79469748 CCATGGTCTTATTCATTTCCCGTCATGTTG
1 CCATGGTCTTATTCATTTCCCGTCATGTTG
79469778 CCATGGT
1 CCATGGT
79469785 ATCTCTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 20
0.64 0.08 0.27
Matches are distributed among these distances:
24 3 0.06
25 6 0.13
26 9 0.19
27 2 0.04
29 2 0.04
30 16 0.34
31 6 0.13
32 3 0.06
ACGTcount: A:0.17, C:0.27, G:0.17, T:0.39
Consensus pattern (30 bp):
CCATGGTCTTATTCATTTCCCGTCATGTTG
Found at i:79469754 original size:56 final size:56
Alignment explanation
Indices: 79469688--79469801 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 56
79469678 ATGGTATCTT
*
79469688 TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGG
1 TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGG
79469744 TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGG
1 TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGG
79469800 TC
1 TC
79469802 CTATTCATTT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.19, C:0.28, G:0.16, T:0.37
Consensus pattern (56 bp):
TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGG
Found at i:79469824 original size:102 final size:102
Alignment explanation
Indices: 79469642--79469847 Score: 322
Period size: 102 Copynumber: 2.0 Consensus size: 102
79469632 ATGGTATCTT
* * *
79469642 TCAACCATGGTCTTATTCATTTCATGTCACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCA
1 TCAACCATGGTCTTATTCATTTCACGTCACGCTGCCATGGTATCTCTCAACCATGGTCCTATTCA
* * *
79469707 TTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGG
66 TTTCACATCAGGTTGCCATGGTATCTTTCAACCATGG
* * *
79469744 TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTCCTATTCA
1 TCAACCATGGTCTTATTCATTTCACGTCACGCTGCCATGGTATCTCTCAACCATGGTCCTATTCA
*
79469809 TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGG
66 TTTCACATCAGGTTGCCATGGTATCTTTCAACCATGG
79469846 TC
1 TC
79469848 TTACACATTT
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 94 1.00
ACGTcount: A:0.20, C:0.27, G:0.16, T:0.38
Consensus pattern (102 bp):
TCAACCATGGTCTTATTCATTTCACGTCACGCTGCCATGGTATCTCTCAACCATGGTCCTATTCA
TTTCACATCAGGTTGCCATGGTATCTTTCAACCATGG
Found at i:79469870 original size:148 final size:148
Alignment explanation
Indices: 79469596--79469893 Score: 452
Period size: 148 Copynumber: 2.0 Consensus size: 148
79469586 ATAGTGTCTT
* * * * *
79469596 TCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
1 TCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTCCTATTCA
* ** * * *
79469661 TTTCATGTCACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCAT
66 TTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACATCAGGTTGCCAT
79469726 GGTATCTTTCAACCATGG
131 GGTATCTTTCAACCATGG
*
79469744 TCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTCCTATTCA
1 TCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTCCTATTCA
* * *
79469809 TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCAT
66 TTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACATCAGGTTGCCAT
*
79469874 GTTATCTTTCAACCATGG
131 GGTATCTTTCAACCATGG
79469892 TC
1 TC
79469894 TTACACATTT
Statistics
Matches: 134, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
148 134 1.00
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.39
Consensus pattern (148 bp):
TCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTCCTATTCA
TTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACATCAGGTTGCCAT
GGTATCTTTCAACCATGG
Found at i:79473440 original size:3 final size:3
Alignment explanation
Indices: 79473432--79473491 Score: 95
Period size: 3 Copynumber: 20.0 Consensus size: 3
79473422 ACTGATAATT
79473432 AAG AAG AAG -AG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AATG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA-G
*
79473480 ACG AAG AAG AAG
1 AAG AAG AAG AAG
79473492 GACGATGGGT
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
2 2 0.04
3 49 0.92
4 2 0.04
ACGTcount: A:0.63, C:0.02, G:0.33, T:0.02
Consensus pattern (3 bp):
AAG
Found at i:79490157 original size:37 final size:37
Alignment explanation
Indices: 79490107--79490185 Score: 140
Period size: 37 Copynumber: 2.1 Consensus size: 37
79490097 CACTCCAGAT
*
79490107 ATGTCGTACTTGAGCTGTAACATAGTTGATTGTCAAC
1 ATGTCGTACTTGAGCTGTAACAGAGTTGATTGTCAAC
*
79490144 ATGTCGTGCTTGAGCTGTAACAGAGTTGATTGTCAAC
1 ATGTCGTACTTGAGCTGTAACAGAGTTGATTGTCAAC
79490181 ATGTC
1 ATGTC
79490186 ATAATGTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.34
Consensus pattern (37 bp):
ATGTCGTACTTGAGCTGTAACAGAGTTGATTGTCAAC
Found at i:79493623 original size:18 final size:19
Alignment explanation
Indices: 79493596--79493638 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
79493586 TTGAATTGAT
**
79493596 AAAATATTAATTATATA-A
1 AAAATATTAAAAATATATA
*
79493614 AAAATTTTAAAAATATATA
1 AAAATATTAAAAATATATA
79493633 AAAATA
1 AAAATA
79493639 ACTTTAATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAATATTAAAAATATATA
Found at i:79496660 original size:93 final size:93
Alignment explanation
Indices: 79496553--79496766 Score: 347
Period size: 93 Copynumber: 2.3 Consensus size: 93
79496543 CCCATAAGCA
* * *
79496553 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAAC
* *
79496618 GAGTTCGGATGCCTAGTTACATTTCACG
66 GAGCTCGGATGCCTAGTTACATCTCACG
* * *
79496646 AACTCGGACTCAACTCAAAGAGTTCGGACGATCGCATCCATAAGTGAACTTGGACTCAACTCAAT
1 AACTCGGACTCAACTCAACGAGTTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAAC
79496711 GAGCTCGGATGCCTAGTTACATCTCACG
66 GAGCTCGGATGCCTAGTTACATCTCACG
*
79496739 AACTCAGACTCAACTCAACGAGTTCGGA
1 AACTCGGACTCAACTCAACGAGTTCGGA
79496767 TGCTCAAAAA
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 111 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCACG
Done.