Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 240 of 344
Found at i:79496669 original size:47 final size:46
Alignment explanation
Indices: 79496598--79496769 Score: 186
Period size: 47 Copynumber: 3.7 Consensus size: 46
79496588 ATCCATAAGT
79496598 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACA-TTCAC
* * * * * * * *
79496645 GAACTCGGACTCAACTCAAAGAGTTCGGACG-ATCGCATCCA-TAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATTCA-C
* * *
79496691 GAACTTGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-TCAC
*
79496738 GAACTCAGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
79496770 TCAAAAATCT
Statistics
Matches: 98, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
45 2 0.02
46 32 0.33
47 62 0.63
48 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTCAC
Found at i:79496719 original size:46 final size:46
Alignment explanation
Indices: 79496544--79496719 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 46
79496534 TGTAACCCAC
* * *
79496544 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGATCGCAT
* * * * * *
79496590 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACG-ATCGCAT
* * * *
79496636 ACATTTCA-CGAACTCGGACTCAACTCAAAGAGTTCGGACGATCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGATCGCAT
* * *
79496683 CCATAAGTGAACTTGGACTCAACTCAATGAGCTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
79496720 TGCCTAGTTA
Statistics
Matches: 103, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
45 2 0.02
46 65 0.63
47 34 0.33
48 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGATCGCAT
Found at i:79503880 original size:59 final size:59
Alignment explanation
Indices: 79503817--79503929 Score: 226
Period size: 59 Copynumber: 1.9 Consensus size: 59
79503807 GGGAGATAAG
79503817 TGGCCGGCACCACATTATAATATTTAAAAAATAGTTATTTTTGGGTGTTGGCACACTGA
1 TGGCCGGCACCACATTATAATATTTAAAAAATAGTTATTTTTGGGTGTTGGCACACTGA
79503876 TGGCCGGCACCACATTATAATATTTAAAAAATAGTTATTTTTGGGTGTTGGCAC
1 TGGCCGGCACCACATTATAATATTTAAAAAATAGTTATTTTTGGGTGTTGGCAC
79503930 CAACTTTATC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (59 bp):
TGGCCGGCACCACATTATAATATTTAAAAAATAGTTATTTTTGGGTGTTGGCACACTGA
Found at i:79505932 original size:131 final size:131
Alignment explanation
Indices: 79505696--79506083 Score: 417
Period size: 131 Copynumber: 3.0 Consensus size: 131
79505686 CTTTATTTAA
* * * *
79505696 CATGAACAATTTTATTTGAGTTAGCTGATTTAAGATCGCAACTCCAAAAAACTTGCTAATTTAAG
1 CATGAACAATTTTATTTGAGTTAGCTAATTCAAGATCACAACTCCAAAAAACTTACTAATTTAAG
* *
79505761 ATCACAATTGATATTATTAAGGTTCACTGATTTAATATCGCAATCTAAGTTCATTCGATTTTAGA
66 ATCACAACTGATATTATTAAGGTTCACTGATTTAATATCGCAACCTAAGTTCATTCGATTTTAGA
79505826 T
131 T
* * * *
79505827 CATGAACAATTCTATTTGAGTTAGCTAATTCAATATCACAACTCCGAACAA-TTCACTAATTTAA
1 CATGAACAATTTTATTTGAGTTAGCTAATTCAAGATCACAACTCCAAAAAACTT-ACTAATTTAA
* **
79505891 GATCGCAACTGATATTATTAAGGTTTGCTGATTTCAA-ATCGCAACCTAAGTTCATTCGATTTTA
65 GATCACAACTGATATTATTAAGGTTCACTGATTT-AATATCGCAACCTAAGTTCATTCGATTTTA
79505955 GAT
129 GAT
* ** * * * ** * * * *
79505958 CATGAACAATTTTATTTGAATTTTCTGATTTAATATCGTAACTCCAAACAGC-TAGTTGATTTAA
1 CATGAACAATTTTATTTGAGTTAGCTAATTCAAGATCACAACTCCAAAAAACTTA-CTAATTTAA
* * * ** *
79506022 GATCACATCTAATATTGTTAAAATT-AGCTGATTTAAGATCGCAACCTATA-TTCATTCGATTT
65 GATCACAACTGATATTATTAAGGTTCA-CTGATTTAATATCGCAACCTA-AGTTCATTCGATTT
79506084 ATCGGAGTTA
Statistics
Matches: 218, Mismatches: 32, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
130 5 0.02
131 210 0.96
132 3 0.01
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (131 bp):
CATGAACAATTTTATTTGAGTTAGCTAATTCAAGATCACAACTCCAAAAAACTTACTAATTTAAG
ATCACAACTGATATTATTAAGGTTCACTGATTTAATATCGCAACCTAAGTTCATTCGATTTTAGA
T
Found at i:79512010 original size:63 final size:63
Alignment explanation
Indices: 79511889--79512036 Score: 163
Period size: 63 Copynumber: 2.3 Consensus size: 63
79511879 GTGATGTGAG
* * * * * ** *
79511889 TTTGATTAATTATATAAGTAATTTAAAGTCTTCTTAAATTGTGTTTTTATAATTAAATAAGAT
1 TTTGATTAATTAAATAATTAATCTAAAGTCTTCTTAAATTGAGTTTCTATAACCAAATAAAAT
* * *
79511952 TTTGATTAATTAAATAATTAATCTAAAGTGTTCTTATATTGAGTTTCTACT-GCCAAATAAAAT
1 TTTGATTAATTAAATAATTAATCTAAAGTCTTCTTAAATTGAGTTTCTA-TAACCAAATAAAAT
* *
79512015 TTTGTTTAATTAGATAATTAAT
1 TTTGATTAATTAAATAATTAAT
79512037 AAAACTTTCT
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
63 70 0.99
64 1 0.01
ACGTcount: A:0.38, C:0.05, G:0.09, T:0.47
Consensus pattern (63 bp):
TTTGATTAATTAAATAATTAATCTAAAGTCTTCTTAAATTGAGTTTCTATAACCAAATAAAAT
Found at i:79515635 original size:86 final size:86
Alignment explanation
Indices: 79515490--79515661 Score: 317
Period size: 86 Copynumber: 2.0 Consensus size: 86
79515480 AATGTGATTT
* *
79515490 TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTTATACCAATATAAAATTTTAACACGAAT
1 TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTGATACAAATATAAAATTTTAACACGAAT
*
79515555 ATTTTATGGCATAATTAATAA
66 ATTTAATGGCATAATTAATAA
79515576 TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTGATACAAATATAAAATTTTAACACGAAT
1 TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTGATACAAATATAAAATTTTAACACGAAT
79515641 ATTTAATGGCATAATTAATAA
66 ATTTAATGGCATAATTAATAA
79515662 ATAAATTTTA
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 83 1.00
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37
Consensus pattern (86 bp):
TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTGATACAAATATAAAATTTTAACACGAAT
ATTTAATGGCATAATTAATAA
Found at i:79518865 original size:23 final size:25
Alignment explanation
Indices: 79518820--79518866 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
79518810 AATAAATATA
*
79518820 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
79518845 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
79518867 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:79523646 original size:40 final size:40
Alignment explanation
Indices: 79523602--79523678 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
79523592 TTATTTTGTG
* * *
79523602 ATAGTTAAATTGCTATCTTTCTTACGAATGATCAAATGTT
1 ATAGTTAAATTGCCATATTTCTTACGAATAATCAAATGTT
*
79523642 ATAGTTAATTTGCCATATTTCTTACGAATAATCAAAT
1 ATAGTTAAATTGCCATATTTCTTACGAATAATCAAAT
79523679 ATTTCATGAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (40 bp):
ATAGTTAAATTGCCATATTTCTTACGAATAATCAAATGTT
Found at i:79524643 original size:29 final size:29
Alignment explanation
Indices: 79524608--79524686 Score: 115
Period size: 29 Copynumber: 2.7 Consensus size: 29
79524598 GTTGTGAGAT
*
79524608 TGGCACTAAGTGTGCGGGTTTGAAA-TGCA
1 TGGCACTAAGTGTGCGGGTTT-AAAGTACA
*
79524637 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGGGTTTAAAGTACA
79524666 TGGCACTAAGTGTGCGTGGTT
1 TGGCACTAAGTGTGCG-GGTT
79524687 GATTATTAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:79534737 original size:31 final size:31
Alignment explanation
Indices: 79534699--79534760 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
79534689 CTAAAAGGTA
** *
79534699 GAGATGTCTATGGAGGAAACAGTACTCATCT
1 GAGATGTCTATAAAGGAAACAATACTCATCT
*
79534730 GAGATGTCTATAAAGGAAATAATACTCATCT
1 GAGATGTCTATAAAGGAAACAATACTCATCT
79534761 TACCACATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (31 bp):
GAGATGTCTATAAAGGAAACAATACTCATCT
Found at i:79537805 original size:53 final size:53
Alignment explanation
Indices: 79537743--79537850 Score: 207
Period size: 53 Copynumber: 2.0 Consensus size: 53
79537733 AGGTTTGGTC
*
79537743 ATATATGTGTGTCTTAAATGTATGCTCTGGGTATGCTCTGTTAAGAGTAAACT
1 ATATATGTGTGTCTTAAATGTATGCTCTGGGTATGCTCCGTTAAGAGTAAACT
79537796 ATATATGTGTGTCTTAAATGTATGCTCTGGGTATGCTCCGTTAAGAGTAAACT
1 ATATATGTGTGTCTTAAATGTATGCTCTGGGTATGCTCCGTTAAGAGTAAACT
79537849 AT
1 AT
79537851 GGAGTTAAAG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (53 bp):
ATATATGTGTGTCTTAAATGTATGCTCTGGGTATGCTCCGTTAAGAGTAAACT
Found at i:79542891 original size:16 final size:16
Alignment explanation
Indices: 79542872--79542902 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79542862 CTTCTTCACT
79542872 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
79542888 TACTTACTTACTTAA
1 TACTCACTTACTTAA
79542903 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:79542908 original size:20 final size:20
Alignment explanation
Indices: 79542869--79542908 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
79542859 AAACTTCTTC
* *
79542869 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
79542889 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
79542909 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:79543019 original size:23 final size:24
Alignment explanation
Indices: 79542981--79543025 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
79542971 TTTGCTCTTC
*
79542981 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
79543005 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
79543026 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:79543284 original size:55 final size:53
Alignment explanation
Indices: 79543094--79543348 Score: 227
Period size: 55 Copynumber: 4.8 Consensus size: 53
79543084 ACACGGGTAC
* * * * *
79543094 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * *
79543143 CTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* * *
79543196 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATGGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AA
* ***
79543251 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * * *
79543304 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
79543349 AAACCCTAAT
Statistics
Matches: 171, Mismatches: 24, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 48 0.28
54 10 0.06
55 71 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:79543285 original size:108 final size:110
Alignment explanation
Indices: 79543141--79543341 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
79543131 ATCCTTTTGA
* *
79543141 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
79543204 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATGGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATGGT
* * * *
79543249 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
79543314 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
79543342 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.58
109 7 0.08
110 27 0.33
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATGGT
Found at i:79548935 original size:23 final size:23
Alignment explanation
Indices: 79548909--79548967 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
79548899 TAGAGATCAA
* *
79548909 ACTTGTGTGCATTT-CGATTTGGT
1 ACTTGTGTGCATTTAC-ATATGGC
*
79548932 ACTTGTGTGCGTTTACATATGGC
1 ACTTGTGTGCATTTACATATGGC
*
79548955 ACTTATGTGCATT
1 ACTTGTGTGCATT
79548968 CTCAGAGTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 29 0.97
24 1 0.03
ACGTcount: A:0.17, C:0.15, G:0.24, T:0.44
Consensus pattern (23 bp):
ACTTGTGTGCATTTACATATGGC
Found at i:79558850 original size:56 final size:54
Alignment explanation
Indices: 79558717--79558867 Score: 189
Period size: 53 Copynumber: 2.8 Consensus size: 54
79558707 AACATAGCAC
* * *
79558717 GCCTCTCAACAGGGCTACATAAGCTCCCGGACCTAGCATGCATCACATAACCACA
1 GCCTCTCAAC-GGGCTACATAAGCTCCCGGACCTAGCATGTACCACATAACAACA
* *
79558772 -CCTCTCATA-GGGCTACATAAGCTCCCGGACCTAGCGTGTACCACATAATAACA
1 GCCTCTCA-ACGGGCTACATAAGCTCCCGGACCTAGCATGTACCACATAACAACA
* *
79558825 TGCCTCTCAACGGGGCTACACAAGCTCCCGAACCTAGCATGTA
1 -GCCTCTCAAC-GGGCTACATAAGCTCCCGGACCTAGCATGTA
79558868 TCATGTCATC
Statistics
Matches: 83, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
53 39 0.47
54 8 0.10
55 8 0.10
56 28 0.34
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19
Consensus pattern (54 bp):
GCCTCTCAACGGGCTACATAAGCTCCCGGACCTAGCATGTACCACATAACAACA
Found at i:79565984 original size:54 final size:56
Alignment explanation
Indices: 79565911--79566068 Score: 187
Period size: 54 Copynumber: 2.9 Consensus size: 56
79565901 CACAACATAG
* * *
79565911 CACGCCTTTCAACGGGGCTACACAAGCTCCTAGACCTAGCATGCATCACAT-A-AC
1 CACGCCTCTCAACGGGGCTACACAAGCTCCTAGACCTAGCATGTATCACATAATAA
** * * * *
79565965 CACGCCTCTCAACAAGGCTACATAAGGTCCTAGACCTAGCGTGTACCACATAATAA
1 CACGCCTCTCAACGGGGCTACACAAGCTCCTAGACCTAGCATGTATCACATAATAA
* *
79566021 CATGCCTCTCAACGGGGCTACACAAGCTCC-CGAACCTAGCATGTATCA
1 CACGCCTCTCAACGGGGCTACACAAGCTCCTAG-ACCTAGCATGTATCA
79566069 TGTCATCAAA
Statistics
Matches: 84, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
54 43 0.51
55 2 0.02
56 39 0.46
ACGTcount: A:0.30, C:0.34, G:0.17, T:0.19
Consensus pattern (56 bp):
CACGCCTCTCAACGGGGCTACACAAGCTCCTAGACCTAGCATGTATCACATAATAA
Found at i:79569993 original size:39 final size:40
Alignment explanation
Indices: 79569950--79570033 Score: 125
Period size: 42 Copynumber: 2.1 Consensus size: 40
79569940 TCTTAGATCC
* *
79569950 GCCACCA-CTTTACGGCTAAGGGCATCAGCTACTACGTTA
1 GCCACCATCTTTACGGCTAAGGGCATCAGCTACCACATTA
79569989 GCCACCACTTCTTTACGGCTAAGGGCATCAGCTACCACATTA
1 GCCACCA--TCTTTACGGCTAAGGGCATCAGCTACCACATTA
79570031 GCC
1 GCC
79570034 TTACCTGGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
39 7 0.17
42 33 0.82
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (40 bp):
GCCACCATCTTTACGGCTAAGGGCATCAGCTACCACATTA
Found at i:79572169 original size:15 final size:15
Alignment explanation
Indices: 79572149--79572178 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
79572139 CATTTTATTT
79572149 ATATTAGGATAATTA
1 ATATTAGGATAATTA
79572164 ATATTAGGATAATTA
1 ATATTAGGATAATTA
79572179 TTAGGACTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (15 bp):
ATATTAGGATAATTA
Found at i:79572225 original size:10 final size:10
Alignment explanation
Indices: 79572210--79572235 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
79572200 GATTTTATTC
79572210 TAATTATCTT
1 TAATTATCTT
79572220 TAATTATCTT
1 TAATTATCTT
79572230 TAATTA
1 TAATTA
79572236 AATGTATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58
Consensus pattern (10 bp):
TAATTATCTT
Found at i:79576401 original size:21 final size:21
Alignment explanation
Indices: 79576375--79576417 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
79576365 ACAACATGAG
79576375 ATTGTGTACGTCCATATGGCT
1 ATTGTGTACGTCCATATGGCT
79576396 ATTGTGTACGTCCATATGGCT
1 ATTGTGTACGTCCATATGGCT
79576417 A
1 A
79576418 AGACCCATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (21 bp):
ATTGTGTACGTCCATATGGCT
Found at i:79580071 original size:40 final size:41
Alignment explanation
Indices: 79579993--79580072 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 41
79579983 TACAGGGATT
*
79579993 TTCACACGGCCTGGCATGCGCCCGTGTCCCTAGCCCGTGTCC
1 TTCACACGGCCTGACA-GCGCCCGTGTCCCTAGCCCGTGTCC
79580035 TTCACACGGCCATGACA-CGCCCGTGT-CCTAGCCCGTGT
1 TTCACACGGCC-TGACAGCGCCCGTGTCCCTAGCCCGTGT
79580073 GCAAAAACCT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
40 12 0.33
41 9 0.25
42 11 0.31
43 4 0.11
ACGTcount: A:0.12, C:0.41, G:0.25, T:0.21
Consensus pattern (41 bp):
TTCACACGGCCTGACAGCGCCCGTGTCCCTAGCCCGTGTCC
Found at i:79581190 original size:46 final size:44
Alignment explanation
Indices: 79581078--79581294 Score: 156
Period size: 46 Copynumber: 4.7 Consensus size: 44
79581068 GTATATCTAT
*
79581078 GCTGATACCATGTCCCAGACATGATCTTAGACTGGCACATCTCATA
1 GCTGATA-CATGTCCCAGACATG-TCTTACACTGGCACATCTCATA
* * * *
79581124 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACTTCTCGA-G
1 GCTGATACATGTCCCAGACATGTCTTACACTGGC--ACATCTC-ATA
* * *
79581170 GCTGATACATGTCCAAGACATGTCTTACACTAGCGCTCGTCTCA-A
1 GCTGATACATGTCCCAGACATGTCTTACACT-G-GCACATCTCATA
* *
79581215 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-G-AC-TCTCATAA
1 -GCTGAT-ACATGTCCCAGACAT-GTCTTACACTGGCACATCTCAT-A
* *
79581260 TGTGGCCGATGCATGTCCCAGACATGTCTTACACT
1 ----GCTGATACATGTCCCAGACATGTCTTACACT
79581295 AGCTCACACA
Statistics
Matches: 141, Mismatches: 17, Indels: 26
0.77 0.09 0.14
Matches are distributed among these distances:
43 5 0.04
44 12 0.09
45 18 0.13
46 59 0.42
47 29 0.21
48 18 0.13
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (44 bp):
GCTGATACATGTCCCAGACATGTCTTACACTGGCACATCTCATA
Found at i:79581275 original size:94 final size:93
Alignment explanation
Indices: 79581031--79581302 Score: 270
Period size: 94 Copynumber: 2.9 Consensus size: 93
79581021 GTCAGGTGCT
* * * *
79581031 GATGCCATGTCCCAGACATGGTCTTACAC-AAGCTCTGGTATATCTATGCTGATACCATGTCCCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTCT-ATA-ATGT-GGCTGATA-CATGTCCCA
*
79581095 GACATGATCTTAGACT-G-GCACATCTCATAGCC
61 GACATG-TCTTACACTAGCGCACATCTCATAGCC
* ** * *
79581127 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACTTCTCGAGGCTGATACATGTCCAAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTA-TAAT-GTGGCTGATACATGTCCCAGAC
* *
79581189 ATGTCTTACACTAGCGCTCGTCTCA-ATGCC
64 ATGTCTTACACTAGCGCACATCTCATA-GCC
* *
79581219 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATGTGGCCGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCT-ATAATGTGGCTGATACATGTCCCAGACA
*
79581284 TGTCTTACACTAGCTCACA
65 TGTCTTACACTAGCGCACA
79581303 CAAGTGACCC
Statistics
Matches: 144, Mismatches: 22, Indels: 22
0.77 0.12 0.12
Matches are distributed among these distances:
90 8 0.06
91 16 0.11
92 23 0.16
93 16 0.11
94 59 0.41
95 17 0.12
96 5 0.03
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTCTATAATGTGGCTGATACATGTCCCAGACAT
GTCTTACACTAGCGCACATCTCATAGCC
Found at i:79594570 original size:13 final size:13
Alignment explanation
Indices: 79594546--79594582 Score: 53
Period size: 11 Copynumber: 3.1 Consensus size: 13
79594536 TTATATTTTT
79594546 TAAAAAATT-ATA
1 TAAAAAATTAATA
79594558 T-AAAAA-TAATA
1 TAAAAAATTAATA
79594569 TAAAAAATTAATA
1 TAAAAAATTAATA
79594582 T
1 T
79594583 GGGCGAGCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.05
11 9 0.41
12 6 0.27
13 6 0.27
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TAAAAAATTAATA
Found at i:79597527 original size:22 final size:21
Alignment explanation
Indices: 79597497--79597582 Score: 63
Period size: 22 Copynumber: 4.0 Consensus size: 21
79597487 AATAACATAT
*
79597497 AATATAATATA-ATATAAAAGA
1 AATATAATA-AGATATAAAAAA
79597518 AATATAAATAAGATATAAAAAA
1 AATAT-AATAAGATATAAAAAA
* * *
79597540 AATAT-TTAATATATAGATAAAT
1 AATATAATAAGATATA-A-AAAA
79597562 AATATATATAA-A-ATAAAAAA
1 AATATA-ATAAGATATAAAAAA
79597582 A
1 A
79597583 TTTTATAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
20 12 0.23
21 8 0.15
22 29 0.55
23 1 0.02
24 3 0.06
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.29
Consensus pattern (21 bp):
AATATAATAAGATATAAAAAA
Found at i:79603307 original size:38 final size:38
Alignment explanation
Indices: 79603256--79603329 Score: 121
Period size: 38 Copynumber: 1.9 Consensus size: 38
79603246 CTCTACTGAG
*
79603256 TACATGTTAAGCATGTCTACTGCTAGTGTTGAATTGAA
1 TACATGTTAAGCATGTCTACTGCTAGCGTTGAATTGAA
* *
79603294 TACATGTTAAGCATGTCTATTGTTAGCGTTGAATTG
1 TACATGTTAAGCATGTCTACTGCTAGCGTTGAATTG
79603330 TTCTATTACA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (38 bp):
TACATGTTAAGCATGTCTACTGCTAGCGTTGAATTGAA
Found at i:79606173 original size:11 final size:11
Alignment explanation
Indices: 79606148--79606183 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
79606138 CTCCAAAAAA
*
79606148 TTTAAACTT-T
1 TTTAAAATTAT
79606158 TTTAAAATTAT
1 TTTAAAATTAT
79606169 TTTAAAATTAT
1 TTTAAAATTAT
79606180 TTTA
1 TTTA
79606184 TATGTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 8 0.33
11 16 0.67
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (11 bp):
TTTAAAATTAT
Found at i:79607279 original size:6 final size:6
Alignment explanation
Indices: 79607268--79607301 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
79607258 TTAGTTTGTT
79607268 ACCAAC ACCAAC ACCAAC ACCAAC ACCAAC ACCA
1 ACCAAC ACCAAC ACCAAC ACCAAC ACCAAC ACCA
79607302 TCCTATTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (6 bp):
ACCAAC
Found at i:79614787 original size:46 final size:45
Alignment explanation
Indices: 79614692--79614907 Score: 184
Period size: 46 Copynumber: 4.6 Consensus size: 45
79614682 ATCTCAAGTT
* * * *
79614692 GATGCCATGTCTCAGACATGGTCTTACACTGACTATCCTTTCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCATCTCG-AGGCC
79614740 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCGAGGCC
* * * * * * * *
79614786 GAAGCATGTCCCAAACATGTCTTATACTAGCACTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTCGAGGCC
* ** *
79614832 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCAAAAT-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TC-ATCTCGAGGCC
79614880 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
79614908 AGCTCACACA
Statistics
Matches: 136, Mismatches: 25, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
45 2 0.01
46 70 0.51
47 39 0.29
48 24 0.18
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCGAGGCC
Found at i:79614887 original size:94 final size:92
Alignment explanation
Indices: 79614737--79614910 Score: 235
Period size: 94 Copynumber: 1.9 Consensus size: 92
79614727 TCCTTTCGTA
**
79614737 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCGAAGCATGTCCCAAAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACAAATCGAGGCCGAAGCATGTCCCAAAC
*
79614802 ATGTCTTATACTAGCACTCGTCTCAAT
66 ATGTCTTACACTAGCACTCGTCTCAAT
* * *
79614829 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCT-CAAAAT-GTGGCCGATGCATGTCCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TAC-AAATCGAGGCCGAAGCATGTCCC
*
79614892 AGACATGTCTTACACTAGC
62 AAACATGTCTTACACTAGC
79614911 TCACACAAGT
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
92 7 0.10
93 13 0.18
94 48 0.68
95 3 0.04
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACAAATCGAGGCCGAAGCATGTCCCAAAC
ATGTCTTACACTAGCACTCGTCTCAAT
Found at i:79621862 original size:72 final size:72
Alignment explanation
Indices: 79621776--79621924 Score: 289
Period size: 72 Copynumber: 2.1 Consensus size: 72
79621766 TTTGCATATA
79621776 TCAAAATAAATATTAGCCATCATTCAAGGCTTAATACAAAATGAGGAATTTATCCCAATCCAACA
1 TCAAAATAAATATTAGCCATCATTCAAGGCTTAATACAAAATGAGGAATTTATCCCAATCCAACA
79621841 CATGTGG
66 CATGTGG
79621848 TCAAAATAAATATTAGCCATCATTCAAGGCTTAATACAAAATGAGGAATTTATCCCAATCCAACA
1 TCAAAATAAATATTAGCCATCATTCAAGGCTTAATACAAAATGAGGAATTTATCCCAATCCAACA
79621913 CATGTGG
66 CATGTGG
*
79621920 CCAAA
1 TCAAA
79621925 TTATAAACAC
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 76 1.00
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.26
Consensus pattern (72 bp):
TCAAAATAAATATTAGCCATCATTCAAGGCTTAATACAAAATGAGGAATTTATCCCAATCCAACA
CATGTGG
Found at i:79622523 original size:46 final size:45
Alignment explanation
Indices: 79622473--79622596 Score: 149
Period size: 46 Copynumber: 2.7 Consensus size: 45
79622463 CGTAGTCGAT
*
79622473 GCATGTCCCAGACATGTCTTACATTGGCTTACGTCTCAAGGCCGAA
1 GCATGTCCCAGACATGTCTTACAATGGCTT-CGTCTCAAGGCCGAA
* * * * *
79622519 GCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACAATGGC-TTCGTCTCAAGGCCGAA
*
79622565 GCCATGTCCTAGACATGGTCTTACAATGGCTT
1 G-CATGTCCCAGACAT-GTCTTACAATGGCTT
79622597 TCAAAATGTG
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
46 40 0.61
47 15 0.23
48 11 0.17
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (45 bp):
GCATGTCCCAGACATGTCTTACAATGGCTTCGTCTCAAGGCCGAA
Found at i:79632941 original size:78 final size:78
Alignment explanation
Indices: 79632812--79632968 Score: 244
Period size: 78 Copynumber: 2.0 Consensus size: 78
79632802 TTTTCTTGTT
* *
79632812 TGTAACCATCTTTAATGCTTATTGTTTTTGAATTCCATACCTGTCTTAAGCCTTAGAACGTTACA
1 TGTAACCATCTTTAATGCTTATTGTTTTTGAATTCCATACCTGTCTTAAGCCTCAGAACATTACA
*
79632877 AACCAAAAACACC
66 AACCAAAAAAACC
* * *
79632890 TGTAACCATCTTTAATGCTTATTGTTTTTGACTTTCATACCTGTAC-TAAGCCTCAGAGCATTAC
1 TGTAACCATCTTTAATGCTTATTGTTTTTGAATTCCATACCTGT-CTTAAGCCTCAGAACATTAC
79632954 AAACCAAAAAAACC
65 AAACCAAAAAAACC
79632968 T
1 T
79632969 ATGTGACCTA
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
78 71 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.10, T:0.34
Consensus pattern (78 bp):
TGTAACCATCTTTAATGCTTATTGTTTTTGAATTCCATACCTGTCTTAAGCCTCAGAACATTACA
AACCAAAAAAACC
Found at i:79640086 original size:19 final size:18
Alignment explanation
Indices: 79640064--79640099 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
79640054 ACTGTGATTG
79640064 TAAAATAAATTAAGTGAAA
1 TAAAATAAATT-AGTGAAA
*
79640083 TAAATTAAATTAGTGAA
1 TAAAATAAATTAGTGAA
79640100 TTTAATATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.31
Consensus pattern (18 bp):
TAAAATAAATTAGTGAAA
Found at i:79641075 original size:8 final size:8
Alignment explanation
Indices: 79641062--79641089 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
79641052 GTCAACCACT
79641062 AATTCTTC
1 AATTCTTC
79641070 AATTCTTC
1 AATTCTTC
79641078 AATTCTTC
1 AATTCTTC
79641086 AATT
1 AATT
79641090 TGGCCCTCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (8 bp):
AATTCTTC
Found at i:79642584 original size:16 final size:16
Alignment explanation
Indices: 79642563--79642593 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79642553 TCTTCAAGTG
*
79642563 AAGAAAGACTACGCCC
1 AAGAAAGAATACGCCC
79642579 AAGAAAGAATACGCC
1 AAGAAAGAATACGCC
79642594 AAAGGGAGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.26, G:0.19, T:0.06
Consensus pattern (16 bp):
AAGAAAGAATACGCCC
Found at i:79643806 original size:25 final size:25
Alignment explanation
Indices: 79643774--79643821 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
79643764 TTAGTGCTGA
*
79643774 AGTTATCTAGGAAGCTCT-TATGGCG
1 AGTTATCTAGAAAG-TCTATATGGCG
79643799 AGTTATCTAGAAAGTCTATATGG
1 AGTTATCTAGAAAGTCTATATGG
79643822 TGAATCCTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (25 bp):
AGTTATCTAGAAAGTCTATATGGCG
Found at i:79650041 original size:18 final size:18
Alignment explanation
Indices: 79650018--79650054 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
79650008 ACTTAGTAAG
79650018 CTCTAAAACAAGTTACTT
1 CTCTAAAACAAGTTACTT
*
79650036 CTCTAAAATAAGTTACTT
1 CTCTAAAACAAGTTACTT
79650054 C
1 C
79650055 AATTTTTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.35
Consensus pattern (18 bp):
CTCTAAAACAAGTTACTT
Found at i:79660239 original size:48 final size:46
Alignment explanation
Indices: 79660139--79660496 Score: 227
Period size: 46 Copynumber: 7.6 Consensus size: 46
79660129 TATTTGTGTA
* *
79660139 CTAGTGTAAGA-TATGTCTGGGACAT-GCATCGGCCATATTATG-AGAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CAT-TGA-GAAGAG
*
79660185 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACAAGAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG--AAGAG
* * *
79660233 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAAG--AG
* * * *
79660279 CTAGTGTAAGA-CATGTCTGAGACA-AGCATCGGC-TATGAGATGTG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAGAAGAG
* * * *
79660323 -TCAGTGTAAGACCATGTCTGGGATATGGCATCGGAACGTAT-AGAGGTG
1 CT-AGTGTAAGACCATGTCTGGGACATGGCATCGG--CAT-TGAGAAGAG
* * * * *
79660371 -TCAGTGTAAGACCATGTCTGGGAAATGGTATCGGTACAAATAAGTGAGAG
1 CT-AGTGTAAGACCATGTCTGGGACATGGCATCGG--C-ATTGAG-AAGAG
* * * * *
79660421 CTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCGTCGATTTCAATAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA---GAAGAG
79660470 -TCAGTGTAAGACCATGTCTGGGACATG
1 CT-AGTGTAAGACCATGTCTGGGACATG
79660497 ACATTGACTT
Statistics
Matches: 257, Mismatches: 32, Indels: 43
0.77 0.10 0.13
Matches are distributed among these distances:
43 1 0.00
44 12 0.05
45 13 0.05
46 70 0.27
47 31 0.12
48 65 0.25
49 33 0.13
50 31 0.12
51 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (46 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAAGAG
Found at i:79660441 original size:50 final size:48
Alignment explanation
Indices: 79660322--79660454 Score: 151
Period size: 48 Copynumber: 2.7 Consensus size: 48
79660312 TATGAGATGT
* ** *
79660322 GTCAGTGTAAGACCATGTCTGGGATATGGCATCGGAACGTATAGAGGT
1 GTCAGTGTAAGACCATGTCTGGGAAATGGCATCGGAACAAATAGAGGA
* *
79660370 GTCAGTGTAAGACCATGTCTGGGAAATGGTATCGGTACAAATA-AGTGA
1 GTCAGTGTAAGACCATGTCTGGGAAATGGCATCGGAACAAATAGAG-GA
* * *
79660418 GAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGG
1 G-TC-AGTGTAAGACCATGTCTGGGAAATGGCATCGG
79660455 CGTCGATTTC
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
47 2 0.03
48 40 0.56
49 1 0.01
50 29 0.40
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.24
Consensus pattern (48 bp):
GTCAGTGTAAGACCATGTCTGGGAAATGGCATCGGAACAAATAGAGGA
Found at i:79668034 original size:40 final size:40
Alignment explanation
Indices: 79667966--79668131 Score: 262
Period size: 40 Copynumber: 4.2 Consensus size: 40
79667956 AACCTAAGTA
*
79667966 CCTTCGGGATTTAG-CCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
79668005 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
79668045 CCTTCGGGACTTAGCCCGGATATAGTAAATCACACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
79668085 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79668125 CCTTCGG
1 CCTTCGG
79668132 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 13 0.11
40 102 0.89
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:79669582 original size:14 final size:14
Alignment explanation
Indices: 79669560--79669602 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
79669550 TTTCATTTTG
79669560 TAACATAAAATTAT
1 TAACATAAAATTAT
*
79669574 TAGCATAAAA-TAT
1 TAACATAAAATTAT
* *
79669587 TAACACAAAATAAT
1 TAACATAAAATTAT
79669601 TA
1 TA
79669603 TAATATGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.30
Consensus pattern (14 bp):
TAACATAAAATTAT
Found at i:79669596 original size:13 final size:13
Alignment explanation
Indices: 79669560--79669598 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
79669550 TTTCATTTTG
79669560 TAACATAAAATTAT
1 TAACATAAAA-TAT
*
79669574 TAGCATAAAATAT
1 TAACATAAAATAT
*
79669587 TAACACAAAATA
1 TAACATAAAATA
79669599 ATTATAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (13 bp):
TAACATAAAATAT
Found at i:79676279 original size:40 final size:40
Alignment explanation
Indices: 79676067--79676272 Score: 297
Period size: 40 Copynumber: 5.2 Consensus size: 40
79676057 AACCCAAGTA
* * *
79676067 CCTTCGAGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
79676106 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
79676146 CCTTCAGGACTTAGCCCGGATATAATAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
79676186 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
79676226 CCTTCGGGACTTAGCCCGGATATGGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79676266 CCTTCGG
1 CCTTCGG
79676273 ATCTTAGTCC
Statistics
Matches: 150, Mismatches: 16, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 12 0.08
40 138 0.92
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:79677723 original size:14 final size:14
Alignment explanation
Indices: 79677701--79677743 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
79677691 TTTCATTTTG
79677701 TAACATAAAATTAT
1 TAACATAAAATTAT
*
79677715 TAGCATAAAA-TAT
1 TAACATAAAATTAT
* *
79677728 TAACACAAAATAAT
1 TAACATAAAATTAT
79677742 TA
1 TA
79677744 TAATATGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.30
Consensus pattern (14 bp):
TAACATAAAATTAT
Found at i:79677737 original size:13 final size:13
Alignment explanation
Indices: 79677701--79677739 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
79677691 TTTCATTTTG
79677701 TAACATAAAATTAT
1 TAACATAAAA-TAT
*
79677715 TAGCATAAAATAT
1 TAACATAAAATAT
*
79677728 TAACACAAAATA
1 TAACATAAAATA
79677740 ATTATAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (13 bp):
TAACATAAAATAT
Found at i:79693323 original size:11 final size:11
Alignment explanation
Indices: 79693307--79693334 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
79693297 AAAAAGGGAT
79693307 CATTCTGAAGA
1 CATTCTGAAGA
79693318 CATTCTGAAGA
1 CATTCTGAAGA
79693329 CATTCT
1 CATTCT
79693335 ACATTTATGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (11 bp):
CATTCTGAAGA
Found at i:79693593 original size:44 final size:45
Alignment explanation
Indices: 79693529--79693758 Score: 154
Period size: 44 Copynumber: 5.1 Consensus size: 45
79693519 TTAAGTCATC
** *
79693529 ATAGCAAACCTTATCACTCTGAAGTTGCAGTAGAGCAGGTCGAAG
1 ATAGCAAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAG
* *
79693574 -TAGCAAGTCTTATCTCTCTGAAGTTGCAGTGGAGCA-GACTGAAG
1 ATAGCAAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTC-GAAG
* ** * * * *
79693618 ATAGC-AGATCGTGCCTCCCTGAAGTTGCAG-CGAAACAGATCGAAG
1 ATAGCAAG-TCTTATCTCTCTGAAGTTGCAGTAG-AGCAGGTCGAAG
** *
79693663 CCA-CAA-TCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGAT--AAA
1 ATAGCAAGT-CTTATCTCTCTGAAGTTGCAGTAGAGCAGG-TCGAAG
* * * *
79693706 ATTACCCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA-GACTGAAG
1 A-TA-GCAAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTC-GAAG
79693753 ATAGCA
1 ATAGCA
79693759 GATCTTGTCT
Statistics
Matches: 139, Mismatches: 30, Indels: 32
0.69 0.15 0.16
Matches are distributed among these distances:
43 5 0.04
44 62 0.45
45 36 0.26
46 32 0.23
47 4 0.03
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.23
Consensus pattern (45 bp):
ATAGCAAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTCGAAG
Found at i:79693642 original size:45 final size:43
Alignment explanation
Indices: 79693529--79693789 Score: 186
Period size: 45 Copynumber: 5.8 Consensus size: 43
79693519 TTAAGTCATC
* * * * *
79693529 ATAGCAAACCTTATCACTCTGAAGTTGCAGTAGAGCAGGTCGAAG
1 ATAGC-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-GAAG
*
79693574 -TAGCAAGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAG
1 ATAGCAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TGAAG
* ** * * *
79693618 ATAGCAGATCGTGCCTCCCTGAAGTTGCAGCGAAACAGATCGAAG
1 ATAGCA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-GAAG
** * * *
79693663 CCA-CAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGAT-AAA
1 ATAGCAAT-CTTATCTCCCTGAAGTTGCAGTGGAGCA-GATGAAG
*
79693706 ATTACCCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
1 A-TA-GCAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TGAAG
* * * *
79693753 ATAGCAGATCTTGTCTCCTTGAAGTTACATTGGAGCA
1 ATAGCA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCA
79693790 AATCAAAGCT
Statistics
Matches: 170, Mismatches: 32, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
43 6 0.04
44 59 0.35
45 67 0.39
46 34 0.20
47 4 0.02
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (43 bp):
ATAGCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAG
Found at i:79693743 original size:135 final size:133
Alignment explanation
Indices: 79693537--79693778 Score: 385
Period size: 135 Copynumber: 1.8 Consensus size: 133
79693527 TCATAGCAAA
** * *
79693537 CCTTATCACTCTGAAGTTGCAGTAGAGCAGGTCGAAGTAGCAAGTCTTATCTCTCTGAAGTTGCA
1 CCTTATCACTCTGAAGTTGCAGTAGAGCAGGTAAAAGTACCAAGTCTTATCTCCCTGAAGTTGCA
79693602 GTGGAGCAGACTGAAGATAGCAGATCGTGCCTCCCTGAAGTTGCAGCGAAACAGATCGAAGCCAC
66 GTGGAGCAGACTGAAGATAGCAGATCGTGCCTCCCTGAAGTTGCAGCGAAACAGATCGAAGCCAC
79693667 AAT
131 AAT
* *
79693670 CCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTTATCTCCCTGAAGTTG
1 CCTTATCACTCTGAAGTTGCAGTAGAGCAGG-TAAAAGTA-CCAAGTCTTATCTCCCTGAAGTTG
* * *
79693735 CAGTGGAGCAGACTGAAGATAGCAGATCTTGTCTCCTTGAAGTT
64 CAGTGGAGCAGACTGAAGATAGCAGATCGTGCCTCCCTGAAGTT
79693779 ACATTGGAGC
Statistics
Matches: 98, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
133 30 0.31
134 5 0.05
135 63 0.64
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.26
Consensus pattern (133 bp):
CCTTATCACTCTGAAGTTGCAGTAGAGCAGGTAAAAGTACCAAGTCTTATCTCCCTGAAGTTGCA
GTGGAGCAGACTGAAGATAGCAGATCGTGCCTCCCTGAAGTTGCAGCGAAACAGATCGAAGCCAC
AAT
Found at i:79693819 original size:135 final size:133
Alignment explanation
Indices: 79693545--79693825 Score: 350
Period size: 135 Copynumber: 2.1 Consensus size: 133
79693535 AACCTTATCA
** * *
79693545 CTCTGAAGTTGCAGTAGAGCAGGTCGAAGTAGCAAGTCTTATCTCTCTGAAGTTGCAGTGGAGCA
1 CTCTGAAGTTGCAGTAGAGCAGGTAAAAGTACCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA
* * * *
79693610 GACTGAAGATAGCAGATCGTGCCTCCCTGAAGTTGCAGCGAAACAGATCGAAGCCACAATCCTTA
66 GACTGAAGATAGCAGATCGTGCCTCCCTGAAGTTACAGCGAAACAAATCAAAGCCACAATCCTCA
79693675 TCT
131 TCT
*
79693678 CTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTTATCTCCCTGAAGTTGCAGTGGAG
1 CTCTGAAGTTGCAGTAGAGCAGG-TAAAAGTA-CCAAGTCTTATCTCCCTGAAGTTGCAGTGGAG
* * * ** * * * *
79693743 CAGACTGAAGATAGCAGATCTTGTCTCCTTGAAGTTACATTGGAGCAAATCAAAGCTATAAGT-C
64 CAGACTGAAGATAGCAGATCGTGCCTCCCTGAAGTTACAGCGAAACAAATCAAAGCCACAA-TCC
79693807 TCATCT
128 TCATCT
79693813 -TCCTGAAGTTGCA
1 CT-CTGAAGTTGCA
79693826 ATAGGACTAC
Statistics
Matches: 126, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
133 23 0.18
134 6 0.05
135 96 0.76
136 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (133 bp):
CTCTGAAGTTGCAGTAGAGCAGGTAAAAGTACCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA
GACTGAAGATAGCAGATCGTGCCTCCCTGAAGTTACAGCGAAACAAATCAAAGCCACAATCCTCA
TCT
Found at i:79712790 original size:7 final size:6
Alignment explanation
Indices: 79712774--79712820 Score: 51
Period size: 6 Copynumber: 7.7 Consensus size: 6
79712764 ATATTACTTT
* *
79712774 TAAAAG TAAAAA TTAAAAA TAAAAT TAAAAA CTAAAAA T-AAAA TAAA
1 TAAAAA TAAAAA -TAAAAA TAAAAA TAAAAA -TAAAAA TAAAAA TAAA
79712821 TCTAAAAAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
5 5 0.14
6 18 0.51
7 12 0.34
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (6 bp):
TAAAAA
Found at i:79712796 original size:19 final size:18
Alignment explanation
Indices: 79712774--79712820 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 18
79712764 ATATTACTTT
*
79712774 TAAAAGTAAAAATTAAAAA
1 TAAAA-TAAAAACTAAAAA
79712793 TAAAATTAAAAACTAAAAA
1 TAAAA-TAAAAACTAAAAA
79712812 TAAAATAAA
1 TAAAATAAA
79712821 TCTAAAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (18 bp):
TAAAATAAAAACTAAAAA
Found at i:79726846 original size:17 final size:17
Alignment explanation
Indices: 79726824--79726877 Score: 108
Period size: 17 Copynumber: 3.2 Consensus size: 17
79726814 CTTAAGGAAA
79726824 GACTTAAGAAATGGCAT
1 GACTTAAGAAATGGCAT
79726841 GACTTAAGAAATGGCAT
1 GACTTAAGAAATGGCAT
79726858 GACTTAAGAAATGGCAT
1 GACTTAAGAAATGGCAT
79726875 GAC
1 GAC
79726878 AAGCACATTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 37 1.00
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (17 bp):
GACTTAAGAAATGGCAT
Found at i:79733406 original size:25 final size:25
Alignment explanation
Indices: 79733359--79733407 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
79733349 TTGGCTTGAC
**
79733359 ATTTACTAAGCAATATCGGATATTT
1 ATTTACTAAGCAATATCAAATATTT
* *
79733384 ATTTATTAGGCAATATCAAATATT
1 ATTTACTAAGCAATATCAAATATT
79733408 CAAATTATTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (25 bp):
ATTTACTAAGCAATATCAAATATTT
Found at i:79735466 original size:13 final size:13
Alignment explanation
Indices: 79735448--79735476 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
79735438 CTATCCGGGC
79735448 TAAATCCTTTCTA
1 TAAATCCTTTCTA
79735461 TAAATCCTTTCTA
1 TAAATCCTTTCTA
79735474 TAA
1 TAA
79735477 TGAGGCCAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (13 bp):
TAAATCCTTTCTA
Found at i:79745540 original size:15 final size:15
Alignment explanation
Indices: 79745516--79745572 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
79745506 AATATATTTG
*
79745516 AAATAATTTAATATA
1 AAATATTTTAATATA
*
79745531 AAATATTTT-ATTTCA
1 AAATATTTTAATAT-A
*
79745546 AAATATAATTTAAAATA
1 AAATAT--TTTAATATA
79745563 AAATATTTTA
1 AAATATTTTA
79745573 TTTTAAATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
14 3 0.09
15 19 0.56
17 10 0.29
18 2 0.06
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AAATATTTTAATATA
Found at i:79745564 original size:32 final size:32
Alignment explanation
Indices: 79745518--79745592 Score: 109
Period size: 32 Copynumber: 2.4 Consensus size: 32
79745508 TATATTTGAA
*
79745518 ATAATTTAATATAAAATATTTTATTTCAAAAT
1 ATAATTTAAAATAAAATATTTTATTTCAAAAT
* *
79745550 ATAATTTAAAATAAAATATTTTATTTTAAATT
1 ATAATTTAAAATAAAATATTTTATTTCAAAAT
79745582 AT-A-TTAAAATA
1 ATAATTTAAAATA
79745593 TATGATGGGC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 8 0.20
31 1 0.03
32 31 0.77
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (32 bp):
ATAATTTAAAATAAAATATTTTATTTCAAAAT
Found at i:79748625 original size:13 final size:13
Alignment explanation
Indices: 79748607--79748632 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79748597 TTTAGCTTCT
79748607 TCTTTTTTCTTAC
1 TCTTTTTTCTTAC
79748620 TCTTTTTTCTTAC
1 TCTTTTTTCTTAC
79748633 AAAGTAGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.23, G:0.00, T:0.69
Consensus pattern (13 bp):
TCTTTTTTCTTAC
Found at i:79751815 original size:24 final size:24
Alignment explanation
Indices: 79751788--79751840 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
79751778 TGAAAAGGTA
79751788 AAAAGGATTTTAAAGTGAATGAAG
1 AAAAGGATTTTAAAGTGAATGAAG
79751812 AAAAGGATTTTAAAGTGAATGAAG
1 AAAAGGATTTTAAAGTGAATGAAG
79751836 AAAAG
1 AAAAG
79751841 CTTACACGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.53, C:0.00, G:0.25, T:0.23
Consensus pattern (24 bp):
AAAAGGATTTTAAAGTGAATGAAG
Found at i:79754159 original size:33 final size:30
Alignment explanation
Indices: 79754112--79754179 Score: 75
Period size: 33 Copynumber: 2.2 Consensus size: 30
79754102 AATTTCACAA
*
79754112 TATTATTTATTT-AAATTCAATCTAATATTAAT
1 TATTATTTATTTAAAATT-AAACTAATA-T-AT
*
79754144 TATTATGTTTTTTAAAATTAAACTAATATAT
1 TATTAT-TTATTTAAAATTAAACTAATATAT
79754175 TATTA
1 TATTA
79754180 AATTTTACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
31 7 0.22
32 7 0.22
33 13 0.41
34 5 0.16
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.53
Consensus pattern (30 bp):
TATTATTTATTTAAAATTAAACTAATATAT
Found at i:79754796 original size:13 final size:13
Alignment explanation
Indices: 79754778--79754804 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
79754768 AAAATGGTCT
79754778 ATTTGTAGGTTAA
1 ATTTGTAGGTTAA
79754791 ATTTGTAGGTTAA
1 ATTTGTAGGTTAA
79754804 A
1 A
79754805 GAATATTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (13 bp):
ATTTGTAGGTTAA
Found at i:79766386 original size:24 final size:22
Alignment explanation
Indices: 79766348--79766407 Score: 61
Period size: 22 Copynumber: 2.6 Consensus size: 22
79766338 TGTGTAAATT
79766348 ATATATATTAATTATGTCAA-AA
1 ATATATATTAATTAT-TCAACAA
79766370 ATATATATTAATTTTATTCAACAA
1 ATATATATTAA--TTATTCAACAA
*
79766394 A-ATATTTTTAATTA
1 ATATA-TATTAATTA
79766408 AAAATTTACC
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
22 14 0.42
23 7 0.21
24 12 0.36
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (22 bp):
ATATATATTAATTATTCAACAA
Found at i:79766552 original size:23 final size:23
Alignment explanation
Indices: 79766526--79766569 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
79766516 AATATTTCAA
79766526 TATTT-TTATAATAATT-AAAATAT
1 TATTTCTT-TAAT-ATTCAAAATAT
79766549 TATTTCTTTAATATTCAAAAT
1 TATTTCTTTAATATTCAAAAT
79766570 CAAACATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 3 0.16
23 14 0.74
24 2 0.11
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (23 bp):
TATTTCTTTAATATTCAAAATAT
Found at i:79766684 original size:27 final size:28
Alignment explanation
Indices: 79766653--79766714 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
79766643 TATTTAATGT
* * *
79766653 TTAAAAAGTATGTCTTACATTTTTATAA
1 TTAAAAAATACGTATTACATTTTTATAA
* *
79766681 -TAAAAAATGCGTATTGCATTTTTATAA
1 TTAAAAAATACGTATTACATTTTTATAA
79766708 TTAAAAA
1 TTAAAAA
79766715 TATCTATTAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
27 22 0.79
28 6 0.21
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.42
Consensus pattern (28 bp):
TTAAAAAATACGTATTACATTTTTATAA
Found at i:79769930 original size:28 final size:29
Alignment explanation
Indices: 79769872--79769930 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 29
79769862 TCACTTCTCT
* ** *
79769872 CAGATTGGTACCTATAGTTTTTTTTATCC
1 CAGATTGGTACCCATAACTTTTTTTAGCC
*
79769901 CAGATTGGTACCCA-AACTTTTTTTCGCC
1 CAGATTGGTACCCATAACTTTTTTTAGCC
79769929 CA
1 CA
79769931 CTGGTTTAGT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.41
Consensus pattern (29 bp):
CAGATTGGTACCCATAACTTTTTTTAGCC
Found at i:79770806 original size:10 final size:9
Alignment explanation
Indices: 79770781--79771036 Score: 90
Period size: 8 Copynumber: 29.1 Consensus size: 9
79770771 CTTCATTGTT
79770781 TATG-TATG
1 TATGTTATG
79770789 TATGTTATG
1 TATGTTATG
79770798 TATTGTTATG
1 TA-TGTTATG
*
79770808 CATG-TATG
1 TATGTTATG
79770816 TTATGTTTAATG
1 -TATG-TT-ATG
79770828 TTATGTT-TG
1 -TATGTTATG
* *
79770837 TATATTTTG
1 TATGTTATG
*
79770846 TATGTCATG
1 TATGTTATG
*
79770855 T-T-TAATG
1 TATGTTATG
79770862 TATGTATAT-
1 TATGT-TATG
*
79770871 TATGTGGTATAT
1 TATGT--TAT-G
*
79770883 TACTATTAT-
1 TA-TGTTATG
79770892 T-TG-TATG
1 TATGTTATG
79770899 -ACTGTTTAT-
1 TA-TG-TTATG
79770908 TAATGTTTATG
1 T-ATGT-TATG
79770919 TATG-TATG
1 TATGTTATG
79770927 TATG-TATG
1 TATGTTATG
* *
79770935 CATG-TATA
1 TATGTTATG
79770943 TATG-TATG
1 TATGTTATG
79770951 TATG-TATG
1 TATGTTATG
79770959 TATG-TATG
1 TATGTTATG
79770967 TATG-TATG
1 TATGTTATG
79770975 TATG-TATG
1 TATGTTATG
*
79770983 TATG-TACG
1 TATGTTATG
79770991 TATG-TATG
1 TATGTTATG
*
79770999 TATG-GATG
1 TATGTTATG
*
79771007 GATGGATGTATG
1 TAT-G-T-TATG
79771019 TATG-TATG
1 TATGTTATG
79771027 TATGTTATG
1 TATGTTATG
79771036 T
1 T
79771037 TTAGTACTGT
Statistics
Matches: 199, Mismatches: 21, Indels: 55
0.72 0.08 0.20
Matches are distributed among these distances:
6 3 0.02
7 6 0.03
8 104 0.52
9 36 0.18
10 24 0.12
11 9 0.05
12 15 0.08
13 2 0.01
ACGTcount: A:0.25, C:0.02, G:0.22, T:0.51
Consensus pattern (9 bp):
TATGTTATG
Found at i:79770812 original size:23 final size:24
Alignment explanation
Indices: 79770775--79770821 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
79770765 ATGTTTCTTC
*
79770775 ATTGTTTATGTATGTATGTTATGT
1 ATTGTTTATGCATGTATGTTATGT
79770799 ATTG-TTATGCATGTATGTTATGT
1 ATTGTTTATGCATGTATGTTATGT
79770822 TTAATGTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.21, C:0.02, G:0.21, T:0.55
Consensus pattern (24 bp):
ATTGTTTATGCATGTATGTTATGT
Found at i:79770924 original size:4 final size:4
Alignment explanation
Indices: 79770915--79771036 Score: 181
Period size: 4 Copynumber: 30.2 Consensus size: 4
79770905 TATTAATGTT
* *
79770915 TATG TATG TATG TATG TATG CATG TATA TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * *
79770963 TATG TATG TATG TATG TATG TATG TACG TATG TATG TATG GATG GATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
79771011 GATG TATG TATG TATG TATG TTATG T
1 TATG TATG TATG TATG TATG -TATG T
79771037 TTAGTACTGT
Statistics
Matches: 109, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
4 105 0.96
5 4 0.04
ACGTcount: A:0.25, C:0.02, G:0.26, T:0.47
Consensus pattern (4 bp):
TATG
Found at i:79775421 original size:37 final size:37
Alignment explanation
Indices: 79775360--79775438 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
79775350 TTATTACGAA
* * * *
79775360 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
*
79775397 GTCTTACCCAGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
79775434 GTCTT
1 GTCTT
79775439 TAGAGCTCAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:79775644 original size:47 final size:47
Alignment explanation
Indices: 79775557--79775938 Score: 557
Period size: 47 Copynumber: 8.1 Consensus size: 47
79775547 CCTTTCGGGA
* * * * * * * * *
79775557 CTTATCACATTTATGCACTTCCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79775604 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79775651 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
79775698 CTTATCACACACATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79775745 CCTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79775792 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79775839 CTTATTACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79775886 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79775935 CTTA
1 CTTA
79775939 CTATCATTTC
Statistics
Matches: 306, Mismatches: 27, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 265 0.87
49 41 0.13
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79779449 original size:40 final size:40
Alignment explanation
Indices: 79779402--79779637 Score: 309
Period size: 40 Copynumber: 5.9 Consensus size: 40
79779392 CGAATACACG
* * *
79779402 TCACCAGCATGATTGCTCTTCGGGACCTAGCCC-GA-ACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * *
79779440 TAACACCAGCACGAATGCTCTTCAGGG-TTTAGCACGGATATA
1 T--CACTAGCATGAATGCTCTTC-GGGACTTAGCCCGGATACA
* *
79779482 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
79779522 TCACTAGCATGAATGCTCCTT-GGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCT-CTTCGGGACTTAGCCCGGATACA
79779562 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
79779602 TCACTAGCATGAATGGTCTTCGGGACTTAGCCCGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA
79779638 CATCATTCAA
Statistics
Matches: 176, Mismatches: 14, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
38 1 0.01
39 5 0.03
40 159 0.90
41 8 0.05
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:79779984 original size:29 final size:29
Alignment explanation
Indices: 79779945--79780023 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
79779935 CTTAATAATC
*
79779945 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
79779975 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
79780004 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
79780024 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:79780066 original size:43 final size:43
Alignment explanation
Indices: 79780005--79780107 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
79779995 TGCATTTCAA
79780005 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
79780048 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
79780091 GCTCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
79780108 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:79782011 original size:37 final size:37
Alignment explanation
Indices: 79781961--79782039 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
79781951 TTATTACGAA
* * *
79781961 GTCTTACCCGGACATAATCTCCACACGAAATTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAATCATCGG
* *
79781998 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAATCATCGG
79782035 GTCTT
1 GTCTT
79782040 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAATCATCGG
Found at i:79782245 original size:47 final size:47
Alignment explanation
Indices: 79782158--79782586 Score: 615
Period size: 47 Copynumber: 9.1 Consensus size: 47
79782148 CCTTTCGGGA
* * * * * * * * *
79782158 CTTATCACATTTATGCACTTCCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79782205 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79782252 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
79782299 CTTATCACACACATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
79782346 CTTATCACACATATACACTTTCACATTCATCACCTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
79782393 CCTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79782440 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79782487 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79782534 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79782583 CTTA
1 CTTA
79782587 CTATCATTTC
Statistics
Matches: 353, Mismatches: 27, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 312 0.88
49 41 0.12
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79785334 original size:13 final size:14
Alignment explanation
Indices: 79785315--79785346 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
79785305 TGGATGGTTT
79785315 TATTTTGTTGGATG
1 TATTTTGTTGGATG
79785329 -ATTTTGTTGGATG
1 TATTTTGTTGGATG
79785342 TATTT
1 TATTT
79785347 CGATGATGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 13 0.76
14 4 0.24
ACGTcount: A:0.16, C:0.00, G:0.25, T:0.59
Consensus pattern (14 bp):
TATTTTGTTGGATG
Found at i:79788716 original size:42 final size:43
Alignment explanation
Indices: 79788669--79788750 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
79788659 GATATATGTG
* * *
79788669 GCATCCGAGCT-GTTGAGAGGTTCGAGTTCATTATGGATGCGA
1 GCATCCGAGCTCATTGAGAGGTCCGAGTTCATAATGGATGCGA
*
79788711 GCATCCGAGCTCATTGAGTGGTCCGAGTTCATAATGGATG
1 GCATCCGAGCTCATTGAGAGGTCCGAGTTCATAATGGATG
79788751 GGATACATGT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
42 11 0.31
43 24 0.69
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (43 bp):
GCATCCGAGCTCATTGAGAGGTCCGAGTTCATAATGGATGCGA
Found at i:79802381 original size:43 final size:43
Alignment explanation
Indices: 79802328--79802413 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
79802318 GATATATGTG
* * *
79802328 GCATCTGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATGCGA
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGCGA
*
79802371 GCATCCGAGCTCGTTGAGTGGTCCGAGTTCATAATGGATGCGA
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGCGA
79802414 TACATGTGAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.21, C:0.19, G:0.33, T:0.28
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGCGA
Found at i:79806818 original size:87 final size:87
Alignment explanation
Indices: 79806671--79806921 Score: 387
Period size: 87 Copynumber: 2.9 Consensus size: 87
79806661 AGATTAAAAT
** * *
79806671 TCAGTGAATTCATCAAGTCCGTCTCAATAAAACCACCCAAACTTTAGGATATGAGCTCATTAAGA
1 TCAGTGAATTCATCAAGTCCGTCTCAATAGGACCACCCAAACTTTGGGATATGAGTTCATTAAGA
*
79806736 GTAAGAAACTTAACCTCACATG
66 GTAAGAAACTCAACCTCACATG
* *
79806758 TCAGTGAATTCATCAAGTCCGTCTCAATAGGATCACTCAAACTTTGGGATATGAGTTCATTAAGA
1 TCAGTGAATTCATCAAGTCCGTCTCAATAGGACCACCCAAACTTTGGGATATGAGTTCATTAAGA
*
79806823 GTAAGAAACTCAACCTCATATG
66 GTAAGAAACTCAACCTCACATG
* * *
79806845 TCGGTGAATTCATCAAGTCCGTCTCAATAGGACCACCCAAACTTTGGGCTATGAATTCATTAAGA
1 TCAGTGAATTCATCAAGTCCGTCTCAATAGGACCACCCAAACTTTGGGATATGAGTTCATTAAGA
*
79806910 GTAA-TAACTCAA
66 GTAAGAAACTCAA
79806922 TCTTATGCAT
Statistics
Matches: 150, Mismatches: 14, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
86 7 0.05
87 143 0.95
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (87 bp):
TCAGTGAATTCATCAAGTCCGTCTCAATAGGACCACCCAAACTTTGGGATATGAGTTCATTAAGA
GTAAGAAACTCAACCTCACATG
Found at i:79809501 original size:46 final size:46
Alignment explanation
Indices: 79809445--79809620 Score: 221
Period size: 46 Copynumber: 3.8 Consensus size: 46
79809435 TGTTTGGGCA
79809445 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*** * * * *
79809491 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* *
79809538 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*
79809584 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79809621 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
45 1 0.01
46 72 0.65
47 37 0.34
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:79809600 original size:93 final size:93
Alignment explanation
Indices: 79809441--79809612 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
79809431 AGGATGTTTG
*
79809441 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
79809506 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
79809534 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGA
79809598 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
79809613 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 1 0.01
93 74 0.99
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:79836567 original size:48 final size:47
Alignment explanation
Indices: 79836508--79836690 Score: 178
Period size: 48 Copynumber: 3.8 Consensus size: 47
79836498 GCCACATTAT
* * *
79836508 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGTAATAATAC
1 GAGAGCTAGTGTAAGACC-TGTCTGGGACATGGCATCGGTAATAATAA
* * *
79836556 GAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCAA-GATAT
1 GAGAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGG--T-AATAATAA
**
79836604 GCA-AGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATAA
1 G-AGAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGGTA---ATA-ATAA
79836655 GAGA-C-AGTGTAAGACCTGTCTGGGACATGGCATCGG
1 GAGAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGG
79836691 CCTCGATATA
Statistics
Matches: 113, Mismatches: 11, Indels: 21
0.78 0.08 0.14
Matches are distributed among these distances:
46 7 0.06
47 12 0.11
48 47 0.42
49 40 0.35
50 2 0.02
51 5 0.04
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.21
Consensus pattern (47 bp):
GAGAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGGTAATAATAA
Found at i:79836715 original size:98 final size:93
Alignment explanation
Indices: 79836473--79836740 Score: 283
Period size: 98 Copynumber: 2.8 Consensus size: 93
79836463 ACATTCAAGC
* * *
79836473 GTAAGACATGCCT-GGACATGCATCGGCCACAT-TATGAGAGCCAGTGTAAGACCATGTCTGGGA
1 GTAAGACATGTCTGGGACATGCATCGGCCTCATATATGAAAG-CAGTGTAAGACC-TGTCTGGGA
* ** *
79836536 CATGGCATTGGTAATAATACGAGAGCTAGT
64 CATGGCATCGACAATAATAAGAGAGCTAGT
* *
79836566 GTAAGACATGTCTGGGACATGCATCGGCCTCAAGATATGCAAGCTAGTGTAAGACCTGTCTGGGA
1 GTAAGACATGTCTGGGACATGCATCGGCCTC-ATATATGAAAGC-AGTGTAAGACCTGTCTGGGA
79836631 CATGGCATCGACACCGATAGATAAGAGA-C-AGT
64 CATGGCATCGACA---ATA-ATAAGAGAGCTAGT
* * *
79836663 GTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAGTCAGTGTAAGACTTGTTTGGG
1 GTAAGACATGTCTGGGACAT-GCATCGGCCTC-ATATATGAAAG-CAGTGTAAGACCTGTCTGGG
**
79836728 ACATAACATCGAC
63 ACATGGCATCGAC
79836741 TTAGATGTGT
Statistics
Matches: 148, Mismatches: 17, Indels: 15
0.82 0.09 0.08
Matches are distributed among these distances:
93 12 0.08
94 16 0.11
95 21 0.14
96 17 0.11
97 22 0.15
98 52 0.35
99 8 0.05
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (93 bp):
GTAAGACATGTCTGGGACATGCATCGGCCTCATATATGAAAGCAGTGTAAGACCTGTCTGGGACA
TGGCATCGACAATAATAAGAGAGCTAGT
Found at i:79836738 original size:49 final size:48
Alignment explanation
Indices: 79836473--79836731 Score: 223
Period size: 49 Copynumber: 5.4 Consensus size: 48
79836463 ACATTCAAGC
* * * *
79836473 GTAAGACATGCCT-GGACAT-GCATCGGCCAC-AT-TATGAGAGCCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAG-CAGT
* * * *
79836518 GTAAGACCATGTCTGGGACATGGCATTGG--T-AATAATACGAGAGCTAGT
1 GTAAGACC-TGTCTGGGACATGGCATCGGCCTCGAT-ATATGAAAGC-AGT
* * * *
79836566 GTAAGACATGTCTGGGACAT-GCATCGGCCTCAAGATATGCAAGCTAGT
1 GTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAGC-AGT
* *
79836614 GTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGAT-AAGAGACAGT
1 GTAAGACCTGTCTGGGACATGGCATCGGC-CTCGATATATGAA-AG-CAGT
79836663 GTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAGTCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAG-CAGT
* *
79836712 GTAAGACTTGTTTGGGACAT
1 GTAAGACCTGTCTGGGACAT
79836732 AACATCGACT
Statistics
Matches: 176, Mismatches: 22, Indels: 28
0.78 0.10 0.12
Matches are distributed among these distances:
45 7 0.04
46 12 0.07
47 19 0.11
48 56 0.32
49 78 0.44
50 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (48 bp):
GTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAGCAGT
Found at i:79838292 original size:46 final size:46
Alignment explanation
Indices: 79838236--79838411 Score: 221
Period size: 46 Copynumber: 3.8 Consensus size: 46
79838226 TGTTTGGGCA
79838236 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*** * * * *
79838282 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* *
79838329 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*
79838375 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79838412 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
45 1 0.01
46 72 0.65
47 37 0.34
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:79838391 original size:93 final size:93
Alignment explanation
Indices: 79838232--79838403 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
79838222 AGGATGTTTG
*
79838232 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
79838297 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
79838325 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGA
79838389 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
79838404 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 1 0.01
93 74 0.99
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:79841370 original size:15 final size:15
Alignment explanation
Indices: 79841350--79841418 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
79841340 ATATCTTGGG
79841350 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
79841365 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
79841380 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
79841395 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
79841410 TTTCTTTAT
1 TTTCTTTAT
79841419 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:79841419 original size:30 final size:30
Alignment explanation
Indices: 79841341--79841428 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
79841331 CATAGTATCA
* * * *
79841341 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
79841371 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
79841401 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
79841429 TATTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:79843451 original size:46 final size:46
Alignment explanation
Indices: 79843350--79843476 Score: 197
Period size: 46 Copynumber: 2.8 Consensus size: 46
79843340 TGTTTGGGCA
*
79843350 TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTAT-GATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
79843394 TCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
79843440 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79843477 GCGGGTTACA
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
44 20 0.26
45 14 0.18
46 42 0.55
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:79848078 original size:38 final size:38
Alignment explanation
Indices: 79848036--79848218 Score: 222
Period size: 38 Copynumber: 4.8 Consensus size: 38
79848026 ATACTAGCAA
* * *
79848036 TAAGCCTACTAGGCACTAAGCTTGAATAATACCGACAC
1 TAAGCCTACTAGGCACAAAGCCTGAATAACACCGACAC
* * * *
79848074 TAAGCCTACTAGGCATAAAACCTGAATAACACTGGCAC
1 TAAGCCTACTAGGCACAAAGCCTGAATAACACCGACAC
* * *
79848112 TAAGCCTACTAGGCAAAAAGCCTGAATAACGCCGGCAC
1 TAAGCCTACTAGGCACAAAGCCTGAATAACACCGACAC
** * *
79848150 TAAGCCTGTTAGGCTCAAAGCCCGAATAACACCGACAC
1 TAAGCCTACTAGGCACAAAGCCTGAATAACACCGACAC
* *
79848188 TAAGCCTGCTAGGCACAAAGCTTGAATAACA
1 TAAGCCTACTAGGCACAAAGCCTGAATAACA
79848219 ATATAATTCA
Statistics
Matches: 123, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 123 1.00
ACGTcount: A:0.37, C:0.27, G:0.18, T:0.17
Consensus pattern (38 bp):
TAAGCCTACTAGGCACAAAGCCTGAATAACACCGACAC
Found at i:79849613 original size:27 final size:27
Alignment explanation
Indices: 79849575--79849634 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
79849565 GAGAAAATCT
* *
79849575 GAATAGATCACCTTCATGGTGTACTCG
1 GAATGGATCACCTTCATGGCGTACTCG
** *
79849602 GAATGGATCACCTTTGTGGCGTACTCT
1 GAATGGATCACCTTCATGGCGTACTCG
79849629 GAATGG
1 GAATGG
79849635 GTTGCCTTAG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (27 bp):
GAATGGATCACCTTCATGGCGTACTCG
Found at i:79855806 original size:20 final size:19
Alignment explanation
Indices: 79855781--79855838 Score: 82
Period size: 19 Copynumber: 3.1 Consensus size: 19
79855771 TTACAAAAAA
*
79855781 AAAAATTCAAAATAATTTTT
1 AAAAATTCAAAAT-ATTTAT
79855801 AAAAATTCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
*
79855820 AAAAATTCTAAA-ATTTAT
1 AAAAATTCAAAATATTTAT
79855838 A
1 A
79855839 TTTTTTGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.19
19 16 0.44
20 13 0.36
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:79855817 original size:19 final size:20
Alignment explanation
Indices: 79855781--79855833 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
79855771 TTACAAAAAA
*
79855781 AAAAATTCAAAATAATTTTT
1 AAAAATTCAAAATAATTTAT
79855801 AAAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTTAT
79855820 AAAAATTCTAAAAT
1 AAAAATTC-AAAAT
79855834 TTATATTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 13 0.42
20 18 0.58
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTAT
Found at i:79861256 original size:31 final size:31
Alignment explanation
Indices: 79861190--79861249 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
79861180 GGTTATTGAT
*
79861190 CTATTAGAAATTTTTTATTTATGTCACTAAA
1 CTATTAGAAATTTTTTATTTAAGTCACTAAA
* *
79861221 CTATTTGAAATTTTTTATTTAAGTTACTA
1 CTATTAGAAATTTTTTATTTAAGTCACTA
79861250 GGCTATTAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.33, C:0.08, G:0.07, T:0.52
Consensus pattern (31 bp):
CTATTAGAAATTTTTTATTTAAGTCACTAAA
Found at i:79861642 original size:19 final size:20
Alignment explanation
Indices: 79861606--79861643 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
79861596 ACATTAGATT
* *
79861606 TTTTTTAAAGTTTTAATATA
1 TTTTTTAAAGATTAAATATA
79861626 TTTTTTAAA-ATTAAATAT
1 TTTTTTAAAGATTAAATAT
79861644 TCAAAATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (20 bp):
TTTTTTAAAGATTAAATATA
Found at i:79861844 original size:41 final size:41
Alignment explanation
Indices: 79861784--79861864 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
79861774 TTGAGATAGT
79861784 TGATTATCTAATTTGATCTCATTCTAAAATCTAATAAATTA
1 TGATTATCTAATTTGATCTCATTCTAAAATCTAATAAATTA
* *
79861825 TGATTATCTAATTTTATCTCATTTTAAAATCTAATAAATT
1 TGATTATCTAATTTGATCTCATTCTAAAATCTAATAAATT
79861865 GGATGAGGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.38, C:0.11, G:0.04, T:0.47
Consensus pattern (41 bp):
TGATTATCTAATTTGATCTCATTCTAAAATCTAATAAATTA
Found at i:79872807 original size:27 final size:27
Alignment explanation
Indices: 79872777--79872954 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
79872767 ATATTGAGTC
* *
79872777 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
79872804 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
79872831 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
79872859 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* ***
79872886 CGCACACTTAGTGC-ATCATATTCGTTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
79872913 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
79872940 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
79872955 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:79880932 original size:27 final size:27
Alignment explanation
Indices: 79880902--79881075 Score: 170
Period size: 27 Copynumber: 6.4 Consensus size: 27
79880892 TATTGAGTCT
* *
79880902 GCACACTCAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTACATAATCAACTC
* *
79880929 GCACACTTAGTGCTACGTAATCAAATC
1 GCACACTTAGTGCTACATAATCAACTC
*
79880956 GCACACTTAGTGCTACATAGTCAAACTC
1 GCACACTTAGTGCTACATAATC-AACTC
** ** *
79880984 GCACACTTAGTGCCGCATGGTCAATTC
1 GCACACTTAGTGCTACATAATCAACTC
* ***
79881011 GCACACTTAGTGC-ATCATATTCGTTTC
1 GCACACTTAGTGCTA-CATAATCAACTC
* * *
79881038 GCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTACATAATCAACTC
79881065 GCACACTTAGT
1 GCACACTTAGT
79881076 ACTGTACAAT
Statistics
Matches: 124, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
GCACACTTAGTGCTACATAATCAACTC
Found at i:79883942 original size:47 final size:49
Alignment explanation
Indices: 79883871--79883999 Score: 153
Period size: 47 Copynumber: 2.7 Consensus size: 49
79883861 TATCGTAAGC
79883871 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-C-AAAACA-AGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATACGAAAACATAGT
* * **
79883917 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-TACGAGATGATAGT
1 -C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATACGAAAACATAGT
*
79883965 CAGTGTAAGACCATGTCTGGGACATGGCATTGGCA
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
79884000 CCTTATCCCA
Statistics
Matches: 69, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
45 1 0.01
46 17 0.25
47 33 0.48
48 18 0.26
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (49 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATACGAAAACATAGT
Found at i:79887935 original size:94 final size:94
Alignment explanation
Indices: 79887774--79887959 Score: 354
Period size: 94 Copynumber: 2.0 Consensus size: 94
79887764 TATATCACCC
*
79887774 AATATTTCTTCCTGTATCTAGATGCTAACAAATCATTATTTGAATAGTTAATTTTATGAGTAGAG
1 AATATTTCTTCCTGTATCTAGATGCTAACAAATCATGATTTGAATAGTTAATTTTATGAGTAGAG
79887839 TAAGTTCAATTCCATAAAATAATTTAAAA
66 TAAGTTCAATTCCATAAAATAATTTAAAA
*
79887868 AATATTTCTTCCTGTATTTAGATGCTAACAAATCATGATTTGAATAGTTAATTTTATGAGTAGAG
1 AATATTTCTTCCTGTATCTAGATGCTAACAAATCATGATTTGAATAGTTAATTTTATGAGTAGAG
79887933 TAAGTTCAATTCCATAAAATAATTTAA
66 TAAGTTCAATTCCATAAAATAATTTAA
79887960 CTTCCCTATT
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 90 1.00
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.40
Consensus pattern (94 bp):
AATATTTCTTCCTGTATCTAGATGCTAACAAATCATGATTTGAATAGTTAATTTTATGAGTAGAG
TAAGTTCAATTCCATAAAATAATTTAAAA
Found at i:79889601 original size:42 final size:42
Alignment explanation
Indices: 79889514--79889602 Score: 97
Period size: 42 Copynumber: 2.1 Consensus size: 42
79889504 TCACACGCCC
* * * *
79889514 GTGTGCCTTACACGGTCACCAGACACGCCCGCGTCAAAGGTT
1 GTGTGCCTCACACGGTCACCAAACACGCCCACGTCAAAGGCT
* * * * *
79889556 GTGTGCCTCACACGGTCACTAAACACGTCCATGTCACATGCT
1 GTGTGCCTCACACGGTCACCAAACACGCCCACGTCAAAGGCT
79889598 GTGTG
1 GTGTG
79889603 AAAATAGGGC
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.22
Consensus pattern (42 bp):
GTGTGCCTCACACGGTCACCAAACACGCCCACGTCAAAGGCT
Found at i:79899751 original size:12 final size:12
Alignment explanation
Indices: 79899734--79899778 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
79899724 GCCTAAGCCT
79899734 ATATCAGTAGCG
1 ATATCAGTAGCG
*
79899746 ATATCAGTGAGGG
1 ATATCAGT-AGCG
* *
79899759 CTAACAGTAGCG
1 ATATCAGTAGCG
79899771 ATATCAGT
1 ATATCAGT
79899779 GAGGGCCTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
12 17 0.65
13 9 0.35
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (12 bp):
ATATCAGTAGCG
Found at i:79899803 original size:34 final size:34
Alignment explanation
Indices: 79899762--79899844 Score: 125
Period size: 34 Copynumber: 2.5 Consensus size: 34
79899752 GTGAGGGCTA
79899762 ACAGTAGC-GATATCAGTGAGGGCCTTAGCCCAAT
1 ACAGTAGCAG-TATCAGTGAGGGCCTTAGCCCAAT
*
79899796 ACAGTAGCAGTATCAGTGTGGGCCTTAGCCCAAT
1 ACAGTAGCAGTATCAGTGAGGGCCTTAGCCCAAT
*
79899830 TCAGTA-CAGTATCAG
1 ACAGTAGCAGTATCAG
79899845 AAATGCATAC
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
33 9 0.20
34 36 0.78
35 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (34 bp):
ACAGTAGCAGTATCAGTGAGGGCCTTAGCCCAAT
Found at i:79903066 original size:33 final size:33
Alignment explanation
Indices: 79903005--79903100 Score: 106
Period size: 33 Copynumber: 2.9 Consensus size: 33
79902995 GAACAGTCTA
*
79903005 GGCCTAAGCCCATATCAGTAGC-GATATCAGTAAG
1 GGCCTTAGCCCA-ATCAGTAGCAG-TATCAGTAAG
* **
79903039 GGCCTTAGCCCAATCAGTAGCAGTATCAATGTG
1 GGCCTTAGCCCAATCAGTAGCAGTATCAGTAAG
*
79903072 AGCCTTAGCCCAATTCAGTA-CAGTATCAG
1 GGCCTTAGCCCAA-TCAGTAGCAGTATCAG
79903101 AAATGCATAC
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
33 36 0.67
34 18 0.33
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (33 bp):
GGCCTTAGCCCAATCAGTAGCAGTATCAGTAAG
Found at i:79903705 original size:10 final size:11
Alignment explanation
Indices: 79903674--79903706 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
79903664 GCCCACACAT
79903674 CCAATTTTGGC
1 CCAATTTTGGC
79903685 CCAATTTTGGC
1 CCAATTTTGGC
79903696 CCAA-TTTGGC
1 CCAATTTTGGC
79903706 C
1 C
79903707 TAAAACGACC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 7 0.32
11 15 0.68
ACGTcount: A:0.18, C:0.30, G:0.18, T:0.33
Consensus pattern (11 bp):
CCAATTTTGGC
Found at i:79910849 original size:18 final size:17
Alignment explanation
Indices: 79910800--79910849 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 17
79910790 CTCCCTTTAC
*
79910800 CTTCTTTATTT-TTCTT
1 CTTCTTTCTTTCTTCTT
*
79910816 ATTCTTTCTTTC--CTT
1 CTTCTTTCTTTCTTCTT
79910831 CTTCTTTCTTCTCTTCTT
1 CTTCTTTCTT-TCTTCTT
79910849 C
1 C
79910850 CCTCATCTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
15 12 0.44
16 11 0.41
18 4 0.15
ACGTcount: A:0.04, C:0.28, G:0.00, T:0.68
Consensus pattern (17 bp):
CTTCTTTCTTTCTTCTT
Found at i:79910850 original size:22 final size:22
Alignment explanation
Indices: 79910817--79910859 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
79910807 ATTTTTCTTA
* *
79910817 TTCTTTCTTTCCTTCTTCTTTC
1 TTCTTTCTTTCCCTCATCTTTC
79910839 TTCTCTTC-TTCCCTCATCTTT
1 TTCT-TTCTTTCCCTCATCTTT
79910860 TCTCCCCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.02, C:0.35, G:0.00, T:0.63
Consensus pattern (22 bp):
TTCTTTCTTTCCCTCATCTTTC
Found at i:79912621 original size:21 final size:21
Alignment explanation
Indices: 79912582--79912621 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
79912572 CTGTGCTCAG
* *
79912582 AGGTTCGACAGTCTTGATGCA
1 AGGTTCGACAGTATCGATGCA
*
79912603 AGGTTCGATAGTATCGATG
1 AGGTTCGACAGTATCGATG
79912622 AGACTTTGTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (21 bp):
AGGTTCGACAGTATCGATGCA
Found at i:79912728 original size:6 final size:6
Alignment explanation
Indices: 79912712--79912762 Score: 70
Period size: 6 Copynumber: 8.8 Consensus size: 6
79912702 TGAGTCCATT
* *
79912712 TATTT- TATTTC TATTTC TATTTC TATTTC TATTTT TATTT- TATTTT
1 TATTTC TATTTC TATTTC TATTTC TATTTC TATTTC TATTTC TATTTC
79912758 TATTT
1 TATTT
79912763 TCCTTCATTT
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
5 10 0.23
6 33 0.77
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.75
Consensus pattern (6 bp):
TATTTC
Found at i:79920396 original size:24 final size:23
Alignment explanation
Indices: 79920355--79920406 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
79920345 GTAGATCGGC
*
79920355 AAAAGCTGAAATGCCGAAATGCT
1 AAAAGCTGAAATGCCGAAAAGCT
*
79920378 GAAAAGCTGGAAA-GTCGAAAAGCT
1 -AAAAGCT-GAAATGCCGAAAAGCT
79920402 AAAAG
1 AAAAG
79920407 TTTGGCTGCG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 5 0.20
24 16 0.64
25 4 0.16
ACGTcount: A:0.48, C:0.13, G:0.25, T:0.13
Consensus pattern (23 bp):
AAAAGCTGAAATGCCGAAAAGCT
Found at i:79920662 original size:29 final size:29
Alignment explanation
Indices: 79920630--79920692 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
79920620 GTATGTGATA
*
79920630 TGGGCGTAATGGGCCATATGAATATGAAT
1 TGGGCGTAATGGGCCATACGAATATGAAT
* ** * *
79920659 TGGGTGTGGTGGGCTATACGAATGTGAAT
1 TGGGCGTAATGGGCCATACGAATATGAAT
79920688 TGGGC
1 TGGGC
79920693 CCGACGGGCT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.24, C:0.10, G:0.38, T:0.29
Consensus pattern (29 bp):
TGGGCGTAATGGGCCATACGAATATGAAT
Found at i:79927777 original size:12 final size:12
Alignment explanation
Indices: 79927760--79927784 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79927750 ACCGCACCCT
79927760 CTAACCAAAGCC
1 CTAACCAAAGCC
79927772 CTAACCAAAGCC
1 CTAACCAAAGCC
79927784 C
1 C
79927785 CGTTACAACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.44, G:0.08, T:0.08
Consensus pattern (12 bp):
CTAACCAAAGCC
Found at i:79929903 original size:85 final size:85
Alignment explanation
Indices: 79929760--79929938 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 85
79929750 GGCCGACCAT
*
79929760 GAGCATGGGTGGACAAGATGTTTTGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
79929825 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
79929845 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
*
79929910 GTAAGGATTAATAAATTAAA
66 GTAAGGATTAATAAAATAAA
*
79929930 GGGCATGGG
1 GAGCATGGG
79929939 CAATAAAATA
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 91 1.00
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:79931257 original size:47 final size:47
Alignment explanation
Indices: 79931203--79931754 Score: 829
Period size: 47 Copynumber: 11.6 Consensus size: 47
79931193 TATTTGAATA
79931203 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
79931250 AATGTGAAAGTGTATATATATGTGATGAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
79931299 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
79931346 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
79931393 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
79931442 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
79931491 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
79931538 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
79931587 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
79931634 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
79931681 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
79931728 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
79931755 TCCCGAAGGG
Statistics
Matches: 477, Mismatches: 20, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 291 0.61
49 184 0.39
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:79931311 original size:96 final size:96
Alignment explanation
Indices: 79931203--79931754 Score: 850
Period size: 96 Copynumber: 5.8 Consensus size: 96
79931193 TATTTGAATA
*
79931203 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
79931268 TATGTGATGAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
79931299 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
79931362 TATGTGATAAGGCCTAATAGCCAATGTGATG
66 TATGTGATAAGGCCTAATGGCCAATGTGATG
* *
79931393 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
79931458 TATATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATATGTGATAAGGCCTAATGGCCAATGTGATG
79931491 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
79931556 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
79931587 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--CA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
* *
79931648 TATATGAGATAAGGCCGAATGGCCAATGTGATG
64 TATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
79931681 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
79931745 -ATGTGATAAG
66 TATGTGATAAG
79931755 TCCCGAAGGG
Statistics
Matches: 424, Mismatches: 22, Indels: 22
0.91 0.05 0.05
Matches are distributed among these distances:
93 2 0.00
94 137 0.32
95 1 0.00
96 237 0.56
97 2 0.00
98 45 0.11
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:79931507 original size:143 final size:142
Alignment explanation
Indices: 79931203--79931754 Score: 851
Period size: 143 Copynumber: 3.9 Consensus size: 142
79931193 TATTTGAATA
*
79931203 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTG-ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
79931268 TATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
65 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
79931333 AGCCGATGTGATG
130 GGCCGATGTGATG
* *
79931346 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTG-ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
79931411 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
65 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
79931476 ATGGCCGATGTGATG
128 ATGGCCGATGTGATG
79931491 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTG-ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
79931556 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAA
65 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAA
*
79931620 TGGCCAATGTGATG
129 TGGCCGATGTGATG
*
79931634 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TAT
1 AATGTGAA-AGTG-ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * *
79931696 ATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATAAATGTGATAAG
64 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
79931755 TCCCGAAGGG
Statistics
Matches: 386, Mismatches: 18, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
140 1 0.00
141 55 0.14
143 192 0.50
144 1 0.00
145 136 0.35
146 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (142 bp):
AATGTGAAAGTGATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGATG
Done.