Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 241 of 344
Found at i:79935567 original size:21 final size:18
Alignment explanation
Indices: 79935523--79935572 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 18
79935513 CCAGTAATGG
79935523 GCCAAGGTGGTGCTCAGCC
1 GCCAAGG-GGTGCTCAGCC
*
79935542 ACCAAGGGGTGCTCAGCTGCC
1 GCCAAGGGGTGCTCA---GCC
79935563 GCCAAGGGGT
1 GCCAAGGGGT
79935573 CGTGGGCAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 8 0.31
19 6 0.23
21 12 0.46
ACGTcount: A:0.18, C:0.30, G:0.38, T:0.14
Consensus pattern (18 bp):
GCCAAGGGGTGCTCAGCC
Found at i:79938302 original size:16 final size:16
Alignment explanation
Indices: 79938281--79938312 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
79938271 GCTGTAACAC
*
79938281 CCCAAAAATTTTGAAA
1 CCCAAAAATCTTGAAA
79938297 CCCAAAAATCTTGAAA
1 CCCAAAAATCTTGAAA
79938313 TCCCGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.22, G:0.06, T:0.22
Consensus pattern (16 bp):
CCCAAAAATCTTGAAA
Found at i:79939810 original size:29 final size:29
Alignment explanation
Indices: 79939768--79939874 Score: 121
Period size: 29 Copynumber: 3.7 Consensus size: 29
79939758 TGTATGTTAT
* *
79939768 TTGGGCTTAATGGGCCATATGAATATGAA
1 TTGGGCCTAGTGGGCCATATGAATATGAA
* *
79939797 TTGGGCCTAGTGGGCTATATGAATGTGAA
1 TTGGGCCTAGTGGGCCATATGAATATGAA
*
79939826 TTGGG-CTTGATGGGCCATAT-AA-ATGAGA
1 TTGGGCCTAG-TGGGCCATATGAATATGA-A
*
79939854 TTGGGCCAAGTGGGCCATATG
1 TTGGGCCTAGTGGGCCATATG
79939875 CACGCATGTA
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
27 3 0.05
28 21 0.32
29 41 0.63
ACGTcount: A:0.26, C:0.12, G:0.33, T:0.29
Consensus pattern (29 bp):
TTGGGCCTAGTGGGCCATATGAATATGAA
Found at i:79944608 original size:5 final size:5
Alignment explanation
Indices: 79944561--79944598 Score: 62
Period size: 5 Copynumber: 8.0 Consensus size: 5
79944551 AATGTTTAAG
79944561 TATA- TATAT TATA- TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
79944599 AATAATATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
4 8 0.25
5 24 0.75
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:79945379 original size:20 final size:20
Alignment explanation
Indices: 79945354--79945395 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
79945344 TTATTTATAT
79945354 TTATTGTTAAAAAAATAAAA
1 TTATTGTTAAAAAAATAAAA
* **
79945374 TTATTGTTGAAACTATAAAA
1 TTATTGTTAAAAAAATAAAA
79945394 TT
1 TT
79945396 GAATTGAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.40
Consensus pattern (20 bp):
TTATTGTTAAAAAAATAAAA
Found at i:79955185 original size:5 final size:5
Alignment explanation
Indices: 79955175--79955199 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
79955165 TTTTTCTTGC
79955175 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
79955200 TTTTATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:79960967 original size:40 final size:40
Alignment explanation
Indices: 79960873--79961017 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
79960863 TACTCGAATG
*
79960873 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
79960914 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
79960954 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
79960994 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
79961018 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:79966662 original size:48 final size:48
Alignment explanation
Indices: 79966591--79966968 Score: 254
Period size: 48 Copynumber: 7.9 Consensus size: 48
79966581 TAAATTGTCT
* * *
79966591 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * *** * *
79966639 ATGCCATGTCCCGGACATGGTCTTACACTTGCTCTTGTCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * * * * * *** *
79966687 ATGCCATGTTCAAAACATGGTCTTACACTGGCTCTCAAATTGTGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * **
79966735 ATGCCATGTCCCAGACATGGTCTTACAGTAGCACACATATCAACACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
** * * * * *
79966783 ATTTCATGTCCTAGACATGGCCTTACACTAGCTCACTTGTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * * ** *** * *
79966831 ATGCCATGTCCCAAACATGATCTTACATTATTTCTTGTTTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* ** * * * * * * **
79966879 CTGCCATGTTTCAAACATTGTCTTACAGTGGCTCTCAAAAT-GTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCAC-ATATCAAGGCCG
* *
79966927 ATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCA
79966969 CCCAATTGTC
Statistics
Matches: 238, Mismatches: 90, Indels: 4
0.72 0.27 0.01
Matches are distributed among these distances:
47 3 0.01
48 234 0.98
49 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
Found at i:79966717 original size:96 final size:95
Alignment explanation
Indices: 79966591--79966955 Score: 302
Period size: 96 Copynumber: 3.8 Consensus size: 95
79966581 TAAATTGTCT
* * * *
79966591 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAGGCTGATGCCATGTCCCGGACA
1 ATGCCATGT-CCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGACA
*
79966656 TGGTCTTACACTTGCTCTTGTCTCAATGCCG
65 TGGTCTTACACTTGCTCTTGTATCAATGCCG
* * ** * * *
79966687 ATGCCATGTTCAAAACATGGTCTTACACTGGCTCTCAAATTGTGGTCGATGCCATGTCCCAGACA
1 ATGCCATG-TCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGACA
* * * *** **
79966752 TGGTCTTACAGTAGCACACATATCAACACCG
65 TGGTCTTACACTTGCTCTTGTATCAATGCCG
** * * * * *
79966783 ATTTCATGTCCTAGACATGGCCTTACACTAGCTCACTTGTCGAGGCCGATGCCATGTCCCAAACA
1 ATGCCATGTCC-AAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGACA
* ** *
79966848 TGATCTTACA-TTATTTCTTGTTTCAATGCCG
65 TGGTCTTACACTT-GCTCTTGTATCAATGCCG
* * * * * ** * *
79966879 CTGCCATGTTTCAAACATTGTCTTACAGTGGCTCTCAAAAT-GTGGCCGATGCCATGTCCTAGAC
1 ATGCCATG-TCCAAACATGGTCTTACACTGGCTCAC-ATGTCGAGGCCGATGCCATGTCCCAGAC
79966943 ATGGTCTTACACT
64 ATGGTCTTACACT
79966956 AGCACACATA
Statistics
Matches: 201, Mismatches: 62, Indels: 11
0.73 0.23 0.04
Matches are distributed among these distances:
95 3 0.01
96 193 0.96
97 5 0.02
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (95 bp):
ATGCCATGTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGACAT
GGTCTTACACTTGCTCTTGTATCAATGCCG
Found at i:79966855 original size:144 final size:143
Alignment explanation
Indices: 79966591--79966857 Score: 338
Period size: 144 Copynumber: 1.9 Consensus size: 143
79966581 TAAATTGTCT
* * * ** * *
79966591 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAGGCTGATGCCATGTCCCGGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCAGACA
* * * * *
79966656 TGGTCTTACACTTGCTCTTGTCTCAATGCCGATGCCATGTTCAAAACATGGTCTTACACTGGCTC
66 TGGCCTTACACTAGCTCTTG-CTCAAGGCCGATGCCATGTCCAAAACATGATCTTACACTGGCTC
79966721 TCAAATTGTGGTCG
130 TCAAATTGTGGTCG
* ** *
79966735 ATGCCATGTCCCAGACATGGTCTTACAGTAGCACACATATCAACACCGATTTCATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCAGACA
* *
79966800 TGGCCTTACACTAGCTCACTTG-TCGAGGCCGATGCCATGTCCCAAACATGATCTTACA
66 TGGCCTTACACTAGCT--CTTGCTCAAGGCCGATGCCATGTCCAAAACATGATCTTACA
79966858 TTATTTCTTG
Statistics
Matches: 103, Mismatches: 18, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
144 99 0.96
146 4 0.04
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (143 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCAGACA
TGGCCTTACACTAGCTCTTGCTCAAGGCCGATGCCATGTCCAAAACATGATCTTACACTGGCTCT
CAAATTGTGGTCG
Found at i:79966931 original size:192 final size:192
Alignment explanation
Indices: 79966595--79966968 Score: 545
Period size: 192 Copynumber: 1.9 Consensus size: 192
79966585 TTGTCTATGC
* * * ** *
79966595 CATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAGGCTGATGCCATGTCCCGGACATGGT
1 CATGTCCCAGACATGGCCTTACACTAGCTCACATGTCAAGGCCGATGCCATGTCCCAAACATGAT
79966660 CTTACACTTGCTCTTGTCTCAATGCCGATGCCATGTTCAAAACATGGTCTTACACTGGCTCTCAA
66 CTTACACTTGCTCTTGTCTCAATGCCGATGCCATGTTCAAAACATGGTCTTACACTGGCTCTCAA
* * *
79966725 ATTGTGGTCGATGCCATGTCCCAGACATGGTCTTACAGTAGCACACATATCAACACCGATTT
131 AATGTGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATTT
* * *
79966787 CATGTCCTAGACATGGCCTTACACTAGCTCACTTGTCGAGGCCGATGCCATGTCCCAAACATGAT
1 CATGTCCCAGACATGGCCTTACACTAGCTCACATGTCAAGGCCGATGCCATGTCCCAAACATGAT
** * * * *
79966852 CTTACA-TTATTTCTTGTTTCAATGCCGCTGCCATGTTTC-AAACATTGTCTTACAGTGGCTCTC
66 CTTACACTT-GCTCTTGTCTCAATGCCGATGCCATG-TTCAAAACATGGTCTTACACTGGCTCTC
*
79966915 AAAATGTGGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCA
129 AAAATGTGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
79966969 CCCAATTGTC
Statistics
Matches: 161, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
191 2 0.01
192 156 0.97
193 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (192 bp):
CATGTCCCAGACATGGCCTTACACTAGCTCACATGTCAAGGCCGATGCCATGTCCCAAACATGAT
CTTACACTTGCTCTTGTCTCAATGCCGATGCCATGTTCAAAACATGGTCTTACACTGGCTCTCAA
AATGTGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATTT
Found at i:79986689 original size:45 final size:45
Alignment explanation
Indices: 79986623--79986966 Score: 420
Period size: 45 Copynumber: 7.6 Consensus size: 45
79986613 TACTAGAAAT
* * ** *
79986623 GAGTAAGATCATGACTTAAAGACGTTATGAAATCACTATTTTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* * * * ** * *
79986668 GAGAAAGACCATGAATAAAAGATGTTGGGGCATCATTATTCTATT
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* *
79986713 GAATAAGACCATGACTGAAAGATGTTATGGCATCACTATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* *
79986758 GAGTAAGACCATGACTGAAAGAAGTTATGGCATCACTACTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* * *
79986803 GAGTAATACCATGACTAAAAGACGTTATGGCATCACGATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
*
79986848 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* ** * *
79986893 GAGTAAGACCATGACTGAAAGACATTATGGCATCAGGATCCTATT
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
* *
79986938 GAGTAAGACCAT-AGCTAAAAGACGATATG
1 GAGTAAGACCATGA-CTGAAAGACGTTATG
79986967 ATATCATAAA
Statistics
Matches: 261, Mismatches: 37, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
44 1 0.00
45 260 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (45 bp):
GAGTAAGACCATGACTGAAAGACGTTATGGCATCACTATTCTATC
Found at i:79986990 original size:90 final size:89
Alignment explanation
Indices: 79986626--79987014 Score: 357
Period size: 90 Copynumber: 4.3 Consensus size: 89
79986616 TAGAAATGAG
* * * ** * * * * * *
79986626 TAAGATCATGACTTAAAGACGTTATGAAATCACTATTTTATCGAGAAAGACCATGAATAAAAGAT
1 TAAGACCATGACTGAAAGACATTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAAGAC
** * *
79986691 GTTGGGGCATCATTATTCTATTGAA
66 GTTATGGCATCA-TAATCTATCGAA
** * *
79986716 TAAGACCATGACTGAAAGATGTTATGGCATCACTATTCTATCGAGTAAGACCATGACTGAAAGAA
1 TAAGACCATGACTGAAAGACATTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAAGAC
* *
79986781 GTTATGGCATCACTACTCTATCGAG
66 GTTATGGCATCA-TAATCTATCGAA
* * *
79986806 TAATACCATGACTAAAAGACGTTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAAGAC
1 TAAGACCATGACTGAAAGACATTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAAGAC
* * *
79986871 GTTATGGCATCACGATTCTATCGAG
66 GTTATGGCATCA-TAATCTATCGAA
* * * *
79986896 TAAGACCATGACTGAAAGACATTATGGCATCAGGATCCTATTGAGTAAGACCAT-AGCTAAAAGA
1 TAAGACCATGACTGAAAGACATTATGGCATCACGATTCTATCGAGTAAGACCATGA-CTGAAAGA
* ** * * **
79986960 CGATATGATATCATAAAGCAAAGGAA
65 CGTTATGGCATCAT-AATCTATCGAA
** *
79986986 TAAGACCATGGTTGAAAGACACTATGGCA
1 TAAGACCATGACTGAAAGACATTATGGCA
79987015 CATTCTGATC
Statistics
Matches: 254, Mismatches: 43, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
89 1 0.00
90 253 1.00
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.26
Consensus pattern (89 bp):
TAAGACCATGACTGAAAGACATTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAAGAC
GTTATGGCATCATAATCTATCGAA
Found at i:79986990 original size:135 final size:135
Alignment explanation
Indices: 79986713--79987014 Score: 367
Period size: 135 Copynumber: 2.2 Consensus size: 135
79986703 TTATTCTATT
* *
79986713 GAATAAGACCATGACTGAAAGATGTTATGGCATCACTATTCTATCGAGTAAGACCATGACTGAAA
1 GAATAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAA
* * * * * **
79986778 GAAGTTATGGCATCACTACTCTATCGAGTAATACCATGACTAAAAGACGTTATGGCATCACGATT
66 GAAGTTATGGCATCACGACTCTATCGAGTAAGACCATGACTAAAAGACGATATGACATCACAAAG
* *
79986843 CTATC
131 CAAAC
*
79986848 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAA
1 GAATAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAA
* * * *
79986913 GACA-TTATGGCATCAGGA-TCCTATTGAGTAAGACCAT-AGCTAAAAGACGATATGATATCATA
66 GA-AGTTATGGCATCACGACT-CTATCGAGTAAGACCATGA-CTAAAAGACGATATGACATCACA
*
79986975 AAGCAAAG
128 AAGCAAAC
** **
79986983 GAATAAGACCATGGTTGAAAGACACTATGGCA
1 GAATAAGACCATGACTGAAAGACGTTATGGCA
79987015 CATTCTGATC
Statistics
Matches: 142, Mismatches: 22, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
134 2 0.01
135 139 0.98
136 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.24
Consensus pattern (135 bp):
GAATAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAA
GAAGTTATGGCATCACGACTCTATCGAGTAAGACCATGACTAAAAGACGATATGACATCACAAAG
CAAAC
Found at i:79991349 original size:26 final size:25
Alignment explanation
Indices: 79991311--79991385 Score: 114
Period size: 26 Copynumber: 2.9 Consensus size: 25
79991301 AAACACACCA
*
79991311 ATATCGCAACAAAGCTGCCAGTAATC
1 ATATCGCAGCAAAGCTGCCAGTAA-C
79991337 ATATCGCAGCAAAGCTGCCAGTAAC
1 ATATCGCAGCAAAGCTGCCAGTAAC
*
79991362 AGTAACGCAGCAAAGCTGCCAGTA
1 A-TATCGCAGCAAAGCTGCCAGTA
79991386 TCAGTATATG
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
25 2 0.04
26 44 0.96
ACGTcount: A:0.37, C:0.27, G:0.20, T:0.16
Consensus pattern (25 bp):
ATATCGCAGCAAAGCTGCCAGTAAC
Found at i:79991859 original size:19 final size:17
Alignment explanation
Indices: 79991819--79991859 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 17
79991809 TTCGTGTGGA
*
79991819 GCCCACAAGCCCATTGG
1 GCCCACAAGCCCATTCG
79991836 GCCCACATAGCCCATTTCG
1 GCCCACA-AGCCCA-TTCG
79991855 GCCCA
1 GCCCA
79991860 TCGTGGCCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.33
18 6 0.29
19 8 0.38
ACGTcount: A:0.22, C:0.44, G:0.20, T:0.15
Consensus pattern (17 bp):
GCCCACAAGCCCATTCG
Found at i:79998954 original size:32 final size:33
Alignment explanation
Indices: 79998910--79998971 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 33
79998900 AGTAATAGTC
*
79998910 TGGGCCTGAGCCCTATT-CAG-AACATTACAGTG
1 TGGGCCTGAGCCC-ATTACAGTAACAATACAGTG
*
79998942 TGGGCCTTAGCCCATTACAGTAACAATACA
1 TGGGCCTGAGCCCATTACAGTAACAATACA
79998972 ACACAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 3 0.12
32 15 0.58
33 8 0.31
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (33 bp):
TGGGCCTGAGCCCATTACAGTAACAATACAGTG
Found at i:80000442 original size:19 final size:19
Alignment explanation
Indices: 80000397--80000442 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
80000387 TATTAATTTA
* *
80000397 AAATGAAATAGTATATAAT
1 AAATGAAATAATAAATAAT
80000416 AAAT-AAATAAATAAATAAT
1 AAATGAAAT-AATAAATAAT
80000435 -AATGAAAT
1 AAATGAAAT
80000443 GTGTATATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 7 0.30
19 16 0.70
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (19 bp):
AAATGAAATAATAAATAAT
Found at i:80000797 original size:4 final size:4
Alignment explanation
Indices: 80000788--80000813 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
80000778 AAAATAGTAA
80000788 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
80000814 TTGGATTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:80006826 original size:43 final size:43
Alignment explanation
Indices: 80006763--80006849 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
80006753 CATCAATAGG
*
80006763 CCCACAGTCGTTGTAAGGGACCCATGCGACCTGAACAGTCAAA
1 CCCACAATCGTTGTAAGGGACCCATGCGACCTGAACAGTCAAA
* *
80006806 CCCACAATCGTTGTAGGGGACCCATGCGACCTTAACAGTCAAA
1 CCCACAATCGTTGTAAGGGACCCATGCGACCTGAACAGTCAAA
80006849 C
1 C
80006850 AGTGGAAAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.30, C:0.31, G:0.22, T:0.17
Consensus pattern (43 bp):
CCCACAATCGTTGTAAGGGACCCATGCGACCTGAACAGTCAAA
Found at i:80016942 original size:46 final size:46
Alignment explanation
Indices: 80016866--80016964 Score: 162
Period size: 46 Copynumber: 2.2 Consensus size: 46
80016856 CTGAATGACG
* * *
80016866 ATGATTTTGTACTAGCAGATTTGAGGACTAAACCCTTGTTTCTTTA
1 ATGAATTTGTACTAGCAGAGTTGAGAACTAAACCCTTGTTTCTTTA
*
80016912 ATGAATTTGTACTGGCAGAGTTGAGAACTAAACCCTTGTTTCTTTA
1 ATGAATTTGTACTAGCAGAGTTGAGAACTAAACCCTTGTTTCTTTA
80016958 ATGAATT
1 ATGAATT
80016965 CAGGAGTTAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.39
Consensus pattern (46 bp):
ATGAATTTGTACTAGCAGAGTTGAGAACTAAACCCTTGTTTCTTTA
Found at i:80023511 original size:43 final size:43
Alignment explanation
Indices: 80023433--80023546 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 43
80023423 TCTGATTTAC
* * *
80023433 ATGTAAGACCATGTTTGAGACA-TCGGCATC-CTATTTGATT-T
1 ATGTAAGACCATGTCTGGGACAGT-GGCATCGATATTTGATTAT
* * *
80023474 CGTGTAAGACCTTGTCTGGGATAGTGGCATCGATATTTGATTAT
1 -ATGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTAT
* *
80023518 ATGTAATACCATGTCTGGGACATTGGCAT
1 ATGTAAGACCATGTCTGGGACAGTGGCAT
80023547 TATACGGACT
Statistics
Matches: 58, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
42 23 0.40
43 34 0.59
44 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (43 bp):
ATGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTAT
Found at i:80024858 original size:17 final size:18
Alignment explanation
Indices: 80024836--80024873 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
80024826 GCGTGTGACC
80024836 TTTATAA-CTTTGAAAAA
1 TTTATAAGCTTTGAAAAA
*
80024853 TTTATAAGTTTTGAAAAA
1 TTTATAAGCTTTGAAAAA
80024871 TTT
1 TTT
80024874 TGTATGAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (18 bp):
TTTATAAGCTTTGAAAAA
Found at i:80025579 original size:19 final size:19
Alignment explanation
Indices: 80025551--80025587 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
80025541 GGGGCATGGT
*
80025551 ATATATGGATGATGGATTG
1 ATATAAGGATGATGGATTG
80025570 ATATAAGGATGATGGATT
1 ATATAAGGATGATGGATT
80025588 TGTTTTGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.30, T:0.35
Consensus pattern (19 bp):
ATATAAGGATGATGGATTG
Found at i:80026240 original size:16 final size:17
Alignment explanation
Indices: 80026219--80026251 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
80026209 CTATTTTGCT
80026219 ATATGTTCTG-TATATG
1 ATATGTTCTGATATATG
*
80026235 ATATGTTTTGATATATG
1 ATATGTTCTGATATATG
80026252 TAGGATTATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.27, C:0.03, G:0.18, T:0.52
Consensus pattern (17 bp):
ATATGTTCTGATATATG
Found at i:80028947 original size:40 final size:40
Alignment explanation
Indices: 80028873--80029049 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
80028863 ACCCAAGTAT
* * *
80028873 CTTCGGGAT-TTAG-CCAGATATAACAACTCACACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
80028912 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * * *
80028952 CTTCGGGTCTTAGCCCGGTTATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * *
80028992 CTTCGGGACATAGCCCAGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
80029032 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
80029050 TTATCATCCG
Statistics
Matches: 114, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 98 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:80029006 original size:80 final size:80
Alignment explanation
Indices: 80028906--80029053 Score: 242
Period size: 80 Copynumber: 1.9 Consensus size: 80
80028896 CAACTCACAC
* * * *
80028906 AAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGT
1 AAATGCCTTCGGGACATAGCCCAGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGCCCGGT
80028971 TATAATCACTAGCAT
66 TATAATCACTAGCAT
* *
80028986 AAATGCCTTCGGGACATAGCCCAGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGT
1 AAATGCCTTCGGGACATAGCCCAGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGCCCGGT
80029051 TAT
66 TAT
80029054 CATCCGAATA
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 62 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
AAATGCCTTCGGGACATAGCCCAGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGCCCGGT
TATAATCACTAGCAT
Found at i:80036583 original size:40 final size:40
Alignment explanation
Indices: 80036516--80036679 Score: 201
Period size: 40 Copynumber: 4.1 Consensus size: 40
80036506 ACCCAAGTAT
*
80036516 CTTCGGG-CTTTAG-CCGGATATAACAACTCACACAAATGC
1 CTTCGGGTC-TTAGCCCGGATATAGCAACTCACACAAATGC
*
80036555 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCACACAAATGC
* *
80036595 CTTCGGGTCTTAGCCCGGATATAATC-ACT-AGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCA-CACAAATGC
* * * *
80036635 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCACACAAATGC
80036675 CTTCG
1 CTTCG
80036680 AATCTTAGTC
Statistics
Matches: 108, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
39 13 0.12
40 93 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCACACAAATGC
Found at i:80036649 original size:80 final size:79
Alignment explanation
Indices: 80036516--80036679 Score: 235
Period size: 80 Copynumber: 2.1 Consensus size: 79
80036506 ACCCAAGTAT
* *
80036516 CTTCGGGCTTTAGCCGGATATAACAACTCACACAAATGCCTTCGGGTCTTAGCCCGGATATAGCA
1 CTTCGGGCTTTAGCCGGATATAACAACTCACACAAATGCCTTCGGGACATAGCCCGGATATAGCA
80036581 ACTCGCACAAATGC
66 ACTCGCACAAATGC
*
80036595 CTTCGGG-TCTTAGCCCGGATATAATC-ACT-AGCATAAATGCCTTCGGGACATAGCCCGGATAT
1 CTTCGGGCT-TTAG-CCGGATATAA-CAACTCA-CACAAATGCCTTCGGGACATAGCCCGGATAT
*
80036657 AGCAACTCGCACGAATGC
62 AGCAACTCGCACAAATGC
80036675 CTTCG
1 CTTCG
80036680 AATCTTAGTC
Statistics
Matches: 77, Mismatches: 4, Indels: 7
0.88 0.05 0.08
Matches are distributed among these distances:
78 1 0.01
79 12 0.16
80 63 0.82
81 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (79 bp):
CTTCGGGCTTTAGCCGGATATAACAACTCACACAAATGCCTTCGGGACATAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:80038699 original size:37 final size:37
Alignment explanation
Indices: 80038635--80038754 Score: 123
Period size: 37 Copynumber: 3.2 Consensus size: 37
80038625 CTTGGTGCCG
* *
80038635 TGGCGTGTTATCGGTTGGTTTAACTCTTATGAGCGTT
1 TGGCGTGTTATCGGTTAGATTAACTCTTATGAGCGTT
* * * *
80038672 TGGCATGTTATCGGTTAGATTAGCTCTTGTGAGTGTT
1 TGGCGTGTTATCGGTTAGATTAACTCTTATGAGCGTT
*** * * **
80038709 TGGCGTGTTATTTTTTGGATTAACTTTTATGAGAATT
1 TGGCGTGTTATCGGTTAGATTAACTCTTATGAGCGTT
80038746 TGGCGTGTT
1 TGGCGTGTT
80038755 TTGGTTGGAT
Statistics
Matches: 67, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.16, C:0.10, G:0.28, T:0.46
Consensus pattern (37 bp):
TGGCGTGTTATCGGTTAGATTAACTCTTATGAGCGTT
Found at i:80041571 original size:23 final size:23
Alignment explanation
Indices: 80041513--80041572 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 23
80041503 AATAACCAAT
80041513 AAAGCTACTAATAGTAACACAGC
1 AAAGCTACTAATAGTAACACAGC
* **
80041536 AAAGCTGA-AAATAGTAATGCAGC
1 AAAGCT-ACTAATAGTAACACAGC
80041559 AAAGCTACTAATAG
1 AAAGCTACTAATAG
80041573 AGGTAAACGT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
22 1 0.03
23 29 0.94
24 1 0.03
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.18
Consensus pattern (23 bp):
AAAGCTACTAATAGTAACACAGC
Found at i:80041724 original size:47 final size:47
Alignment explanation
Indices: 80041655--80041748 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
80041645 GAATCCCAAA
*
80041655 CCCAATGCAGTATGTCATGTCATAATATTTTATGTATGTAAGGTTTC
1 CCCAATGCAGTATGTCATGTCATAATATTTTATGTATGCAAGGTTTC
*
80041702 CCCAATGCAGTATGTCATGTCATAATATTTTTTGTATGCAAGGTTTC
1 CCCAATGCAGTATGTCATGTCATAATATTTTATGTATGCAAGGTTTC
80041749 ATACTCAGGT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (47 bp):
CCCAATGCAGTATGTCATGTCATAATATTTTATGTATGCAAGGTTTC
Found at i:80052387 original size:49 final size:49
Alignment explanation
Indices: 80052315--80052559 Score: 310
Period size: 49 Copynumber: 4.9 Consensus size: 49
80052305 TAGCCAAAGC
* * * *
80052315 TATCTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
80052364 TATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * *
80052414 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * *
80052465 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* *
80052514 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
80052560 TCACAATAGA
Statistics
Matches: 170, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
49 84 0.49
50 48 0.28
51 38 0.22
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:80052555 original size:100 final size:99
Alignment explanation
Indices: 80052328--80052559 Score: 313
Period size: 100 Copynumber: 2.3 Consensus size: 99
80052318 CTGGTACGCA
* * * * *
80052328 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTACACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGGTACACATAGTAGCCTACACTTA
* *
80052393 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCCGATACACG
* * *
80052427 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCGGGTACACATAGTAGCCTACACT
* ** *
80052492 TAGTACTACACATGCGACC-AATTATCCGGTACACG
64 TAGTACTACACACGCGACCTAACCATCCGATACACG
80052527 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
80052560 TCACAATAGA
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
99 29 0.25
100 46 0.40
101 41 0.35
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGGTACACATAGTAGCCTACACTTA
GTACTACACACGCGACCTAACCATCCGATACACG
Found at i:80060991 original size:79 final size:81
Alignment explanation
Indices: 80060817--80061040 Score: 232
Period size: 79 Copynumber: 2.8 Consensus size: 81
80060807 TTGAATGATG
* * *
80060817 TCCGG-GCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGC
1 TCCGGAGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGC
80060878 ATTTGTGCGAGATACTAA
64 ATTTGTGCGAGATACTAA
*
80060896 TTCGGAGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGAGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCAT
* *
80060958 TTGTGCGAGTTATTAAA
66 TTGTGCGAGATACT-AA
* ** * * * * *
80060975 TCCGG-GTTTTGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTATGTCCCGAAGGCAT
1 TCCGGAGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCAT
80061038 TTG
66 TTG
80061041 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
78 27 0.22
79 63 0.51
80 32 0.26
81 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGAGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCGAGATACTAA
Found at i:80061002 original size:40 final size:40
Alignment explanation
Indices: 80060817--80061040 Score: 219
Period size: 40 Copynumber: 5.7 Consensus size: 40
80060807 TTGAATGATG
* * *
80060817 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-AATA
1 TCCGGGCTATGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
80060857 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTATG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
80060896 TTCGGAGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGG-GCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
80060936 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
80060975 TCCGGGTTTTGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
80061016 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTATGTCCCGAAGGCATTTG
80061041 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 18, Indels: 16
0.82 0.09 0.08
Matches are distributed among these distances:
39 68 0.43
40 80 0.51
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80068770 original size:79 final size:81
Alignment explanation
Indices: 80068596--80068819 Score: 232
Period size: 79 Copynumber: 2.8 Consensus size: 81
80068586 TTGAATGATG
* * *
80068596 TCCGG-GCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGC
1 TCCGGAGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGC
80068657 ATTTGTGCGAGATACTAA
64 ATTTGTGCGAGATACTAA
*
80068675 TTCGGAGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGAGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCAT
* *
80068737 TTGTGCGAGTTATTAAA
66 TTGTGCGAGATACT-AA
* ** * * * * *
80068754 TCCGG-GTTTTGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTATGTCCCGAAGGCAT
1 TCCGGAGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCAT
80068817 TTG
66 TTG
80068820 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
78 27 0.22
79 63 0.51
80 32 0.26
81 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGAGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCGAGATACTAA
Found at i:80068781 original size:40 final size:40
Alignment explanation
Indices: 80068596--80068819 Score: 219
Period size: 40 Copynumber: 5.7 Consensus size: 40
80068586 TTGAATGATG
* * *
80068596 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-AATA
1 TCCGGGCTATGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
80068636 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTATG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
80068675 TTCGGAGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGG-GCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
80068715 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
80068754 TCCGGGTTTTGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
80068795 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTATGTCCCGAAGGCATTTG
80068820 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 18, Indels: 16
0.82 0.09 0.08
Matches are distributed among these distances:
39 68 0.43
40 80 0.51
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80076558 original size:79 final size:81
Alignment explanation
Indices: 80076384--80076607 Score: 232
Period size: 79 Copynumber: 2.8 Consensus size: 81
80076374 TTGAATGATG
* * *
80076384 TCCGG-GCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGC
1 TCCGGAGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGC
80076445 ATTTGTGCGAGATACTAA
64 ATTTGTGCGAGATACTAA
*
80076463 TTCGGAGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGAGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCAT
* *
80076525 TTGTGCGAGTTATTAAA
66 TTGTGCGAGATACT-AA
* ** * * * * *
80076542 TCCGG-GTTTTGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTATGTCCCGAAGGCAT
1 TCCGGAGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCAT
80076605 TTG
66 TTG
80076608 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
78 27 0.22
79 63 0.51
80 32 0.26
81 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGAGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCGAGATACTAA
Found at i:80076569 original size:40 final size:40
Alignment explanation
Indices: 80076384--80076607 Score: 219
Period size: 40 Copynumber: 5.7 Consensus size: 40
80076374 TTGAATGATG
* * *
80076384 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-AATA
1 TCCGGGCTATGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
80076424 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTATG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
80076463 TTCGGAGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGG-GCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
80076503 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
80076542 TCCGGGTTTTGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
80076583 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTATGTCCCGAAGGCATTTG
80076608 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 18, Indels: 16
0.82 0.09 0.08
Matches are distributed among these distances:
39 68 0.43
40 80 0.51
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80088201 original size:40 final size:40
Alignment explanation
Indices: 80088118--80088304 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
80088108 TTCTAACACG
* * * * * *
80088118 AGCCTACGGGTCTTT-AACCCAGATTCTATTTCAGCACGA-
1 AGCCTGCGGGTCTTTAAACCCGGATACAATTCCAGCA-TAT
* * * *
80088157 AGCCTGCGAGTATTTAAACCCGGATAGAATTCTAGCATAT
1 AGCCTGCGGGTCTTTAAACCCGGATACAATTCCAGCATAT
80088197 AGCCTGCGGGTCTTTAAACCCGGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAACCCGGATACAATTCCAGCATAT
* *
80088237 AGCCTGTGGGTTTTTAAACCCGGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAACCCGGATACAATTCCAGCATAT
* *
80088277 AGCCTGCGGGTCTTTAAGCCTGGATACA
1 AGCCTGCGGGTCTTTAAACCCGGATACA
80088305 CACATCAAAT
Statistics
Matches: 126, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
39 13 0.10
40 113 0.90
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAACCCGGATACAATTCCAGCATAT
Found at i:80095885 original size:40 final size:40
Alignment explanation
Indices: 80095841--80095988 Score: 199
Period size: 40 Copynumber: 3.7 Consensus size: 40
80095831 TTCAGCACGA
* **
80095841 AGCCTGCGAGTATTTAAACCCGGATACAATTCTGGCATAT
1 AGCCTGCGAGTCTTTAAACCCGGATACAATTCCAGCATAT
*
80095881 AGCCTG-TAGGTCTTTAAACCCGGATACAATTCCAGCATAT
1 AGCCTGCGA-GTCTTTAAACCCGGATACAATTCCAGCATAT
* * *
80095921 AGCCTGTGGGTTTTTAAACCCGGATACAATTCCAGCATAT
1 AGCCTGCGAGTCTTTAAACCCGGATACAATTCCAGCATAT
* *
80095961 AGCCTGCGGGTCTTTAAGCCCGGATACA
1 AGCCTGCGAGTCTTTAAACCCGGATACA
80095989 CACATCAAAT
Statistics
Matches: 96, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 95 0.99
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (40 bp):
AGCCTGCGAGTCTTTAAACCCGGATACAATTCCAGCATAT
Found at i:80095917 original size:80 final size:80
Alignment explanation
Indices: 80095810--80095988 Score: 218
Period size: 80 Copynumber: 2.2 Consensus size: 80
80095800 CGAGCCAACG
* * * *
80095810 GGTCTTT-AACCCAGATTCCATTTCAGCACGA-AGCCTGCGAGTATTTAAACCCGGATACAATTC
1 GGTCTTTAAACCCGGATACAATTCCAGCA-GATAGCCTGCGAGTATTTAAACCCGGATACAATTC
** *
80095873 TGGCATATAGCCTGTA
65 CAGCATATAGCCTGCA
* * * *
80095889 GGTCTTTAAACCCGGATACAATTCCAGCATATAGCCTGTGGGTTTTTAAACCCGGATACAATTCC
1 GGTCTTTAAACCCGGATACAATTCCAGCAGATAGCCTGCGAGTATTTAAACCCGGATACAATTCC
*
80095954 AGCATATAGCCTGCG
66 AGCATATAGCCTGCA
*
80095969 GGTCTTTAAGCCCGGATACA
1 GGTCTTTAAACCCGGATACA
80095989 CACATCAAAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 8 0.09
80 77 0.91
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (80 bp):
GGTCTTTAAACCCGGATACAATTCCAGCAGATAGCCTGCGAGTATTTAAACCCGGATACAATTCC
AGCATATAGCCTGCA
Found at i:80099661 original size:21 final size:21
Alignment explanation
Indices: 80099635--80099676 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
80099625 CATAAGGATA
80099635 AACTCGATAGATGGTATAAGG
1 AACTCGATAGATGGTATAAGG
80099656 AACTCGATAGATGGTATAAGG
1 AACTCGATAGATGGTATAAGG
80099677 TCCTTCCCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.29, T:0.24
Consensus pattern (21 bp):
AACTCGATAGATGGTATAAGG
Found at i:80099825 original size:32 final size:32
Alignment explanation
Indices: 80099784--80099849 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
80099774 TGACTATCAT
* *
80099784 GCCATCTTTTTTATTTTTCTTTACATAGTTTG
1 GCCATCTTTTTTATCTTTCTTTACACAGTTTG
80099816 GCCATCTTTTTTATCTTTCTTTACACAGTTTG
1 GCCATCTTTTTTATCTTTCTTTACACAGTTTG
80099848 GC
1 GC
80099850 ATTCTCATAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.15, C:0.20, G:0.11, T:0.55
Consensus pattern (32 bp):
GCCATCTTTTTTATCTTTCTTTACACAGTTTG
Found at i:80105324 original size:46 final size:46
Alignment explanation
Indices: 80105256--80105350 Score: 163
Period size: 46 Copynumber: 2.1 Consensus size: 46
80105246 TATGAATGAG
* *
80105256 ATAGATTTTAGCAAAATTAACACCATAAGCAACAATTATAACATAA
1 ATAGATTTTAGCAAAATCAACACAATAAGCAACAATTATAACATAA
*
80105302 ATAGATTTTAGCAGAATCAACACAATAAGCAACAATTATAACATAA
1 ATAGATTTTAGCAAAATCAACACAATAAGCAACAATTATAACATAA
80105348 ATA
1 ATA
80105351 AGCTAGGACA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.53, C:0.15, G:0.07, T:0.25
Consensus pattern (46 bp):
ATAGATTTTAGCAAAATCAACACAATAAGCAACAATTATAACATAA
Found at i:80117700 original size:14 final size:15
Alignment explanation
Indices: 80117669--80117701 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
80117659 TAAAGGACTT
*
80117669 AAAGATTAATGCATA
1 AAAGATTAATGCACA
80117684 AAAGATTAAT-CACA
1 AAAGATTAATGCACA
80117698 AAAG
1 AAAG
80117702 GTTATGTCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (15 bp):
AAAGATTAATGCACA
Found at i:80118604 original size:48 final size:50
Alignment explanation
Indices: 80118533--80118710 Score: 161
Period size: 49 Copynumber: 3.6 Consensus size: 50
80118523 CATTCCAACA
* * *
80118533 GTAAGACCATGTCTGGGACATGGCATCGGCACGTATA-G-AGGTG-TCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTAAGAGCT-AGT
* * *
80118581 GTAAGACTAGGTCTGGGACATGGCGTCGGCACGGATATGTAAGAGCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTAAGAGCTAGT
* * * * * *
80118631 GTAAGACCATGTCTGGGACATGGCGTTGGC-CTCGAT-TTTGATAG-TCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTAAGAGCT-AGT
* *
80118680 GTAAGACCATGTCTAGGACATGGCATTGGCA
1 GTAAGACCATGTCTGGGACATGGCATCGGCA
80118711 TTATACCCTA
Statistics
Matches: 109, Mismatches: 15, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
48 34 0.31
49 38 0.35
50 36 0.33
51 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.25
Consensus pattern (50 bp):
GTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTAAGAGCTAGT
Found at i:80118652 original size:50 final size:50
Alignment explanation
Indices: 80118533--80118703 Score: 181
Period size: 50 Copynumber: 3.5 Consensus size: 50
80118523 CATTCCAACA
* * * *
80118533 GTAAGACCATGTCTGGGACATGGCATCGGCACGTATA-G-AGGTGTCAGT
1 GTAAGACCATGTCTGGGACATGGCGTCGGCACGGATATGTAAGAGTCAGT
* *
80118581 GTAAGACTAGGTCTGGGACATGGCGTCGGCACGGATATGTAAGAG-CTAGT
1 GTAAGACCATGTCTGGGACATGGCGTCGGCACGGATATGTAAGAGTC-AGT
* * * * *
80118631 GTAAGACCATGTCTGGGACATGGCGTTGGC-CTCGAT-TTTGATAGTCAGT
1 GTAAGACCATGTCTGGGACATGGCGTCGGCAC-GGATATGTAAGAGTCAGT
*
80118680 GTAAGACCATGTCTAGGACATGGC
1 GTAAGACCATGTCTGGGACATGGC
80118704 ATTGGCATTA
Statistics
Matches: 104, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
48 33 0.32
49 34 0.33
50 37 0.36
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.25
Consensus pattern (50 bp):
GTAAGACCATGTCTGGGACATGGCGTCGGCACGGATATGTAAGAGTCAGT
Found at i:80124283 original size:41 final size:41
Alignment explanation
Indices: 80124217--80124359 Score: 180
Period size: 41 Copynumber: 3.5 Consensus size: 41
80124207 ATCAGTGATA
* * ** *
80124217 TTCAGGCTT-TATGCCTAGCAGGCTTTGTGATAGTGAATTAT
1 TTCAGGCTTAT-TGCCTAGCAAGCTTTATGCCAGTGTATTAT
* * *
80124258 ATCAAGCTTATTGCCTAGCAAGCTTTATGCCGGTGTATTAT
1 TTCAGGCTTATTGCCTAGCAAGCTTTATGCCAGTGTATTAT
*
80124299 TTCAGGCTTACTGCCTAGCAAGCTTTATGCCAGTGTATTAT
1 TTCAGGCTTATTGCCTAGCAAGCTTTATGCCAGTGTATTAT
*
80124340 TTCAGGCCTATTGCCTAGCA
1 TTCAGGCTTATTGCCTAGCA
80124360 GGCTCTGTAC
Statistics
Matches: 87, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
41 86 0.99
42 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.36
Consensus pattern (41 bp):
TTCAGGCTTATTGCCTAGCAAGCTTTATGCCAGTGTATTAT
Found at i:80124373 original size:82 final size:82
Alignment explanation
Indices: 80124217--80124380 Score: 195
Period size: 82 Copynumber: 2.0 Consensus size: 82
80124207 ATCAGTGATA
* * * *
80124217 TTCAGGCTTTATGCCTAGCAGGCTTTGTGATAGTGAATTATATCAAGCTTATTGCCTAGCAAGCT
1 TTCAGGCTTTATGCCTAGCAAGCTTTATGACAGTGAATTATATCAAGCCTATTGCCTAGCAAGCT
* * *
80124282 TTATGCCGGTGTATTAT
66 CTATACCGGTGAATTAT
* * * * *
80124299 TTCAGGC-TTACTGCCTAGCAAGCTTTATGCCAGTGTATTATTTCAGGCCTATTGCCTAGCAGGC
1 TTCAGGCTTTA-TGCCTAGCAAGCTTTATGACAGTGAATTATATCAAGCCTATTGCCTAGCAAGC
*
80124363 TCTGTACCGGTGAATTAT
65 TCTATACCGGTGAATTAT
80124381 ACTATTCTTT
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
81 3 0.04
82 65 0.96
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (82 bp):
TTCAGGCTTTATGCCTAGCAAGCTTTATGACAGTGAATTATATCAAGCCTATTGCCTAGCAAGCT
CTATACCGGTGAATTAT
Found at i:80124380 original size:41 final size:41
Alignment explanation
Indices: 80124217--80124380 Score: 168
Period size: 41 Copynumber: 4.0 Consensus size: 41
80124207 ATCAGTGATA
* * ***
80124217 TTCAGGCTT-TATGCCTAGCAGGCTTTGTGATAGTGAATTAT
1 TTCAGGCTTAT-TGCCTAGCAAGCTTTATGCCGGTGAATTAT
* * *
80124258 ATCAAGCTTATTGCCTAGCAAGCTTTATGCCGGTGTATTAT
1 TTCAGGCTTATTGCCTAGCAAGCTTTATGCCGGTGAATTAT
* * *
80124299 TTCAGGCTTACTGCCTAGCAAGCTTTATGCCAGTGTATTAT
1 TTCAGGCTTATTGCCTAGCAAGCTTTATGCCGGTGAATTAT
* * * * *
80124340 TTCAGGCCTATTGCCTAGCAGGCTCTGTACCGGTGAATTAT
1 TTCAGGCTTATTGCCTAGCAAGCTTTATGCCGGTGAATTAT
80124381 ACTATTCTTT
Statistics
Matches: 102, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
41 101 0.99
42 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (41 bp):
TTCAGGCTTATTGCCTAGCAAGCTTTATGCCGGTGAATTAT
Found at i:80128449 original size:39 final size:39
Alignment explanation
Indices: 80128332--80128632 Score: 396
Period size: 39 Copynumber: 7.6 Consensus size: 39
80128322 GCTCCTCGTT
* * *
80128332 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCA
* * *
80128372 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
80128412 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
80128451 CAAATGCCTTCGGGCTTATCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
80128490 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
80128529 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
80128568 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
80128609 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
80128633 CATCATTCAA
Statistics
Matches: 241, Mismatches: 14, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
39 166 0.69
40 64 0.27
41 11 0.05
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:80135520 original size:39 final size:39
Alignment explanation
Indices: 80135431--80135703 Score: 392
Period size: 39 Copynumber: 6.9 Consensus size: 39
80135421 AGCCCGGTTA
* * *
80135431 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGAAT
*
80135471 TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
1 TAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
80135510 TAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
1 TAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
80135549 TAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
1 TAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
*
80135588 TAGTATCTTGCACAAATGCCTTCGGGCTTAGCCCGGAAT
1 TAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
* *
80135627 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATAT
1 TAGTATCTCGCACAAATGCCTTCGG-GCTTAGCCCGGA-AT
*
80135668 T-GTCA-CTTAGCAC-AA-GCCTTCGGGACTTAGCCCGGA
1 TAGT-ATC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGA
80135704 CATCATTCAA
Statistics
Matches: 218, Mismatches: 10, Indels: 11
0.91 0.04 0.05
Matches are distributed among these distances:
39 168 0.77
40 41 0.19
41 9 0.04
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
TAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
Found at i:80143434 original size:29 final size:28
Alignment explanation
Indices: 80143374--80143434 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
80143364 CTGCACATGA
* * *
80143374 ATATGGCCCACTAGGCCCAATCTCGTTC
1 ATATGGCCCACTAGGCCAAATCACATTC
*
80143402 ATATGGCCCATTAGGCCTAAATCACATTC
1 ATATGGCCCACTAGGCC-AAATCACATTC
80143431 ATAT
1 ATAT
80143435 ACATGCTTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 16 0.57
29 12 0.43
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (28 bp):
ATATGGCCCACTAGGCCAAATCACATTC
Found at i:80149477 original size:41 final size:41
Alignment explanation
Indices: 80149420--80149581 Score: 148
Period size: 41 Copynumber: 4.0 Consensus size: 41
80149410 TCAAGCTCTA
80149420 TGCCTAGCAGGCTTTATGCCGGTGAATTATATCAGGCTTAT
1 TGCCTAGCAGGCTTTATGCCGGTGAATTATATCAGGCTTAT
* * ** *
80149461 TGCCTAGCAAGCTTTATG-CTGACATATTATTTCAGGCTTAT
1 TGCCTAGCAGGCTTTATGCCGGTGA-ATTATATCAGGCTTAT
* * ** * * *
80149502 TGCCTAGTAGGCTTTATGTCGGTTTATTATTTCAAGCCTAT
1 TGCCTAGCAGGCTTTATGCCGGTGAATTATATCAGGCTTAT
* * * *
80149543 TGTCTAGCAGGCTCTGTGCCGGTGTATTATA-CTAGGCTT
1 TGCCTAGCAGGCTTTATGCCGGTGAATTATATC-AGGCTT
80149582 TATGCCTTGC
Statistics
Matches: 96, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
40 4 0.04
41 90 0.94
42 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.38
Consensus pattern (41 bp):
TGCCTAGCAGGCTTTATGCCGGTGAATTATATCAGGCTTAT
Found at i:80152343 original size:30 final size:31
Alignment explanation
Indices: 80152309--80152366 Score: 109
Period size: 30 Copynumber: 1.9 Consensus size: 31
80152299 TACTTTAAAC
80152309 CTTCATAAAATAATAAAATAAA-ATTTTTAA
1 CTTCATAAAATAATAAAATAAATATTTTTAA
80152339 CTTCATAAAATAATAAAATAAATATTTT
1 CTTCATAAAATAATAAAATAAATATTTT
80152367 GACTTTGGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (31 bp):
CTTCATAAAATAATAAAATAAATATTTTTAA
Found at i:80155789 original size:27 final size:29
Alignment explanation
Indices: 80155759--80155816 Score: 88
Period size: 27 Copynumber: 2.1 Consensus size: 29
80155749 TATAATCATA
80155759 TATCTCATA-A-GGGCATAATAGTCATTT
1 TATCTCATACAGGGGCATAATAGTCATTT
80155786 TA--TCATACAGGGGCATAATAGTCATTT
1 TATCTCATACAGGGGCATAATAGTCATTT
80155813 TATC
1 TATC
80155817 GATTCGGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
25 5 0.19
26 1 0.04
27 21 0.78
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36
Consensus pattern (29 bp):
TATCTCATACAGGGGCATAATAGTCATTT
Found at i:80162757 original size:48 final size:48
Alignment explanation
Indices: 80162704--80162799 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
80162694 CCTATCGATT
* *
80162704 AGCTTTGCCACCAGAGGTGGAAAAGATTCACGACATGTTTCATGTATC
1 AGCTTTGCCACCAGAGCTGGAAAAGATTCACGACATGTTTCATATATC
*
80162752 AGCTTTGCCACCAGAGCTGGAAAAGATTCACGACGTGTTTCATATATC
1 AGCTTTGCCACCAGAGCTGGAAAAGATTCACGACATGTTTCATATATC
80162800 CATGCTACGC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (48 bp):
AGCTTTGCCACCAGAGCTGGAAAAGATTCACGACATGTTTCATATATC
Found at i:80164397 original size:47 final size:46
Alignment explanation
Indices: 80164285--80164412 Score: 154
Period size: 47 Copynumber: 2.7 Consensus size: 46
80164275 TCATTTGTGT
*
80164285 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATGATGA
* * *
80164331 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATTGG-CAT-TGA-GAA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATATGATG-A
80164377 GAGTGCTAGTGTAAGACATGTCTGGGACATGCATCG
1 GA--GCTAGTGTAAGACATGTCTGGGACATGCATCG
80164413 ACTACGAGAC
Statistics
Matches: 70, Mismatches: 7, Indels: 10
0.80 0.08 0.11
Matches are distributed among these distances:
45 1 0.01
46 23 0.33
47 29 0.41
48 17 0.24
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATGATGA
Found at i:80168322 original size:37 final size:37
Alignment explanation
Indices: 80168272--80168344 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
80168262 CATTACATTA
80168272 GACATAACTCGTAGCATTTCTTGTTGATATATTGGCT
1 GACATAACTCGTAGCATTTCTTGTTGATATATTGGCT
80168309 GACATAACTCGTAGCATTTCTTGTTGATATATTGGC
1 GACATAACTCGTAGCATTTCTTGTTGATATATTGGC
80168345 GTTTTATGAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (37 bp):
GACATAACTCGTAGCATTTCTTGTTGATATATTGGCT
Found at i:80172304 original size:29 final size:29
Alignment explanation
Indices: 80172242--80172304 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
80172232 CAAAATTTCA
*
80172242 AAAAATTATTTTTAAAAATTAAAACTCAT
1 AAAAATTATTTATAAAAATTAAAACTCAT
* * *
80172271 TAAAATTA-TTATAAAATTATAAAACTTAT
1 AAAAATTATTTATAAAAAT-TAAAACTCAT
80172300 AAAAA
1 AAAAA
80172305 GATATTTTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
28 8 0.29
29 20 0.71
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (29 bp):
AAAAATTATTTATAAAAATTAAAACTCAT
Found at i:80175406 original size:32 final size:32
Alignment explanation
Indices: 80175365--80175429 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
80175355 TCATAATATC
80175365 ATGAAGCCAAAGCTTATAAACTTTACATACAT
1 ATGAAGCCAAAGCTTATAAACTTTACATACAT
80175397 ATGAAGCCAAAGCTTATAAACTTTACATACAT
1 ATGAAGCCAAAGCTTATAAACTTTACATACAT
80175429 A
1 A
80175430 CTTGTACGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.28
Consensus pattern (32 bp):
ATGAAGCCAAAGCTTATAAACTTTACATACAT
Found at i:80176367 original size:22 final size:21
Alignment explanation
Indices: 80176342--80176382 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
80176332 TAGTAAAATT
80176342 CATTTCTCTAACCA-TAAACATG
1 CATTT-TCT-ACCATTAAACATG
80176364 CATTTTCTACCATTAAACA
1 CATTTTCTACCATTAAACA
80176383 CAAAAATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 9 0.50
22 5 0.28
ACGTcount: A:0.37, C:0.27, G:0.02, T:0.34
Consensus pattern (21 bp):
CATTTTCTACCATTAAACATG
Found at i:80185138 original size:33 final size:31
Alignment explanation
Indices: 80185058--80185141 Score: 87
Period size: 31 Copynumber: 2.6 Consensus size: 31
80185048 GCTTTATTTG
*
80185058 TTCTGTGTTTACTGTCCCAATAGACTATCTA
1 TTCTATGTTTACTGTCCCAATAGACTATCTA
* * * * * *
80185089 TTCTCTATTTATTGTCCTAGTGGACTATCTCTA
1 TTCTATGTTTACTGTCCCAATAGACTA--TCTA
80185122 TTCTATGTTTACTGTCCCAA
1 TTCTATGTTTACTGTCCCAA
80185142 CGGACTTTCT
Statistics
Matches: 40, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
31 21 0.52
33 19 0.47
ACGTcount: A:0.20, C:0.23, G:0.12, T:0.45
Consensus pattern (31 bp):
TTCTATGTTTACTGTCCCAATAGACTATCTA
Found at i:80185147 original size:33 final size:33
Alignment explanation
Indices: 80185058--80185155 Score: 101
Period size: 33 Copynumber: 3.0 Consensus size: 33
80185048 GCTTTATTTG
* *
80185058 TTCTGTGTTTACTGTCCCAATAGACTA--TCTA
1 TTCTATGTTTACTGTCCCAATGGACTATCTCTA
* * * * *
80185089 TTCTCTATTTATTGTCCTAGTGGACTATCTCTA
1 TTCTATGTTTACTGTCCCAATGGACTATCTCTA
* *
80185122 TTCTATGTTTACTGTCCCAACGGACTTTCTCTA
1 TTCTATGTTTACTGTCCCAATGGACTATCTCTA
80185155 T
1 T
80185156 GAATGTCATG
Statistics
Matches: 52, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
31 21 0.40
33 31 0.60
ACGTcount: A:0.19, C:0.23, G:0.12, T:0.45
Consensus pattern (33 bp):
TTCTATGTTTACTGTCCCAATGGACTATCTCTA
Found at i:80191037 original size:55 final size:53
Alignment explanation
Indices: 80190949--80191204 Score: 229
Period size: 55 Copynumber: 4.8 Consensus size: 53
80190939 ATTAGGGTTT
*
80190949 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* * * * * *
80191004 AAGGATACCATGTAAGACCATGTCAAAAAATGGCATTGATAAGTTACTATAAAGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* *
80191059 AAAGG-T-CCAATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACC-ATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* * * *
80191112 AAGGATACCATGTAAGACCATGTCGAGACATGGTAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
* * * * *
80191161 AATGGATACCATGTAATACCATGACAAGTCATTGCAATGGTAAG
1 AA-GGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
80191205 GTACCCATGT
Statistics
Matches: 165, Mismatches: 27, Indels: 23
0.77 0.13 0.11
Matches are distributed among these distances:
49 2 0.01
50 35 0.21
52 7 0.04
53 37 0.22
54 15 0.09
55 65 0.39
56 4 0.02
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:80196153 original size:33 final size:33
Alignment explanation
Indices: 80196111--80196176 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
80196101 CTAAGGAGTG
*
80196111 GGAAAGTGTTAGCGGAATCTGAAAAGAAGCTAA
1 GGAAAGTGTTAGCGAAATCTGAAAAGAAGCTAA
80196144 GGAAAGTGTTAGCGAAATCTGAAAAGAAGCTAA
1 GGAAAGTGTTAGCGAAATCTGAAAAGAAGCTAA
80196177 CACAAGAAGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.44, C:0.09, G:0.29, T:0.18
Consensus pattern (33 bp):
GGAAAGTGTTAGCGAAATCTGAAAAGAAGCTAA
Found at i:80199426 original size:24 final size:24
Alignment explanation
Indices: 80199394--80199458 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 24
80199384 TCTTACTTAT
* *
80199394 TCGCACACAAAGTGCCACGT-TTCC
1 TCGCACACATAGTGCCACGTAGT-C
* *
80199418 TCGCACACATAGTGCTATGTAGTC
1 TCGCACACATAGTGCCACGTAGTC
80199442 TCGCACACATAGTGCCA
1 TCGCACACATAGTGCCA
80199459 ATTAGTTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
24 34 0.97
25 1 0.03
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.23
Consensus pattern (24 bp):
TCGCACACATAGTGCCACGTAGTC
Found at i:80199464 original size:24 final size:24
Alignment explanation
Indices: 80199417--80199464 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
80199407 GCCACGTTTC
*
80199417 CTCGCACACATAGTGCTATGTAGT
1 CTCGCACACATAGTGCAATGTAGT
80199441 CTCGCACACATAGTGCCAAT-TAGT
1 CTCGCACACATAGTG-CAATGTAGT
80199465 TTTTACACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 19 0.86
25 3 0.14
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (24 bp):
CTCGCACACATAGTGCAATGTAGT
Found at i:80206163 original size:49 final size:48
Alignment explanation
Indices: 80206107--80206218 Score: 118
Period size: 49 Copynumber: 2.3 Consensus size: 48
80206097 TTAAAAGTCC
** **
80206107 GCACACATAGTGCTCTTA-TTTATTCGCACACATAGTGCCATGTAGTCTT
1 GCACACATAGTGCTCTTAGTTT-TT-GCACACATAGTGCCACATAACCTT
* * * *
80206156 GCACACATTGTGCCACTTAGTTTTTGCACATATAGTGCCGCATAACCTT
1 GCACACATAGTG-CTCTTAGTTTTTGCACACATAGTGCCACATAACCTT
80206205 GCACACATAGTGCT
1 GCACACATAGTGCT
80206219 GAAATTTCTT
Statistics
Matches: 51, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
48 1 0.02
49 40 0.78
50 7 0.14
51 3 0.06
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (48 bp):
GCACACATAGTGCTCTTAGTTTTTGCACACATAGTGCCACATAACCTT
Found at i:80206176 original size:24 final size:24
Alignment explanation
Indices: 80206132--80206217 Score: 84
Period size: 24 Copynumber: 3.5 Consensus size: 24
80206122 TTATTTATTC
80206132 GCACACATAGTGCCA-TGTAGTCTT
1 GCACACATAGTGCCACT-TAGTCTT
* *
80206156 GCACACATTGTGCCACTTAGTTTTT
1 GCACACATAGTGCCACTTAG-TCTT
* * * **
80206181 GCACATATAGTGCCGCATAACCTT
1 GCACACATAGTGCCACTTAGTCTT
80206205 GCACACATAGTGC
1 GCACACATAGTGC
80206218 TGAAATTTCT
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
24 31 0.62
25 19 0.38
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (24 bp):
GCACACATAGTGCCACTTAGTCTT
Found at i:80206193 original size:25 final size:25
Alignment explanation
Indices: 80206107--80206194 Score: 85
Period size: 25 Copynumber: 3.6 Consensus size: 25
80206097 TTAAAAGTCC
*
80206107 GCACACATAGTG-CTCTTA-TTTATT
1 GCACACATAGTGCCACTTAGTTT-TT
*
80206131 CGCACACATAGTGCCA-TGTAG-TCTT
1 -GCACACATAGTGCCACT-TAGTTTTT
*
80206156 GCACACATTGTGCCACTTAGTTTTT
1 GCACACATAGTGCCACTTAGTTTTT
*
80206181 GCACATATAGTGCC
1 GCACACATAGTGCC
80206195 GCATAACCTT
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
24 17 0.33
25 31 0.60
26 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (25 bp):
GCACACATAGTGCCACTTAGTTTTT
Found at i:80206650 original size:18 final size:17
Alignment explanation
Indices: 80206609--80206651 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
80206599 TTTTTTATTC
* *
80206609 ATATTATTTATGATATT
1 ATATTATTTATAATATA
80206626 ATAATTATTTATCAATATA
1 AT-ATTATTTAT-AATATA
80206645 ATATTAT
1 ATATTAT
80206652 GATTAAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 2 0.09
18 14 0.64
19 6 0.27
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (17 bp):
ATATTATTTATAATATA
Found at i:80211916 original size:40 final size:40
Alignment explanation
Indices: 80211886--80212055 Score: 216
Period size: 40 Copynumber: 4.3 Consensus size: 40
80211876 GGACTAAGAT
* *
80211886 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* *
80211926 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** *
80211966 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
80212006 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
80212045 CCGAAGGCATT
1 CCGAAGGCATT
80212056 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 33 0.28
40 85 0.72
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:80212075 original size:79 final size:80
Alignment explanation
Indices: 80211908--80212090 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
80211898 GTGCGAGATA
* * *
80211908 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
80211973 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
80211988 TTAAATCCGGGTTACGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
80212052 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
80212067 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
80212091 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:80219225 original size:39 final size:39
Alignment explanation
Indices: 80219061--80219243 Score: 161
Period size: 40 Copynumber: 4.6 Consensus size: 39
80219051 TTGAATGCTG
* * * ** * *
80219061 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
80219101 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
**
80219141 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* *
80219181 TCCGGGTTACGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
80219220 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
80219244 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
39 37 0.31
40 74 0.62
41 9 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:80219263 original size:79 final size:79
Alignment explanation
Indices: 80219114--80219278 Score: 179
Period size: 79 Copynumber: 2.1 Consensus size: 79
80219104 GGACTAAGAT
* * * ** ** *
80219114 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
**
80219179 AATCCGGGTTACGTC
66 AATCC-GGTTAAATC
* * * *
80219194 CCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
80219258 TATCCGGTTAAATC
66 AATCCGGTTAAATC
80219272 CCGAAGG
1 CCGAAGG
80219279 TACGTGATTT
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
78 14 0.20
79 49 0.70
80 7 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGTTAAATC
Found at i:80222886 original size:40 final size:40
Alignment explanation
Indices: 80222856--80223025 Score: 216
Period size: 40 Copynumber: 4.3 Consensus size: 40
80222846 GGACTAAGAT
* *
80222856 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* *
80222896 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** *
80222936 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
80222976 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
80223015 CCGAAGGCATT
1 CCGAAGGCATT
80223026 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 33 0.28
40 85 0.72
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:80222940 original size:80 final size:79
Alignment explanation
Indices: 80222803--80223027 Score: 236
Period size: 80 Copynumber: 2.8 Consensus size: 79
80222793 TTGAATGCTG
* * * ** * * * * *
80222803 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
80222867 TGTGCGAGATACTAAA
64 TGTGCGAGATACTAAA
* * * *
80222883 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTT
* **
80222948 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * *
80222963 TCCGGGTTACGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
80223028 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 36 0.30
80 82 0.67
81 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:80223045 original size:79 final size:80
Alignment explanation
Indices: 80222878--80223060 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
80222868 GTGCGAGATA
* * *
80222878 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
80222943 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
80222958 TTAAATCCGGGTTACGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
80223022 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
80223037 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
80223061 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:80228393 original size:40 final size:40
Alignment explanation
Indices: 80228315--80228538 Score: 310
Period size: 40 Copynumber: 5.5 Consensus size: 40
80228305 ACCCAAGTAT
* *
80228315 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
80228354 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
80228394 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
80228434 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
80228477 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
80228517 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
80228539 CATCCGAATA
Statistics
Matches: 166, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
39 12 0.07
40 117 0.70
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:80228511 original size:83 final size:80
Alignment explanation
Indices: 80228315--80228538 Score: 317
Period size: 83 Copynumber: 2.8 Consensus size: 80
80228305 ACCCAAGTAT
* * * *
80228315 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
80228379 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
80228394 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
80228458 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
*
80228477 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
80228539 CATCCGAATA
Statistics
Matches: 129, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 13 0.10
80 49 0.38
83 67 0.52
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:80236607 original size:40 final size:40
Alignment explanation
Indices: 80236529--80236752 Score: 276
Period size: 40 Copynumber: 5.5 Consensus size: 40
80236519 ACCCAAGTAT
*
80236529 CTTCGGGATTTAG-CCGGATATAG-CAACTCA-CACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACT-AGCACAAATGC
* **
80236568 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
80236608 CTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
80236648 CTTCGGGACTTAGCCCGGGTAGAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
80236691 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
80236731 CTTCGAGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
80236753 CATCCGAATA
Statistics
Matches: 161, Mismatches: 16, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
39 13 0.08
40 112 0.70
41 1 0.01
43 35 0.22
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:80236712 original size:83 final size:80
Alignment explanation
Indices: 80236529--80236751 Score: 274
Period size: 83 Copynumber: 2.8 Consensus size: 80
80236519 ACCCAAGTAT
* * *
80236529 CTTCGGGATTTAG-CCGGATATAG-CAACTCA-CACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 CTTCGGGACTTAGCCCGGATATAGTC-ACT-AGCACAAATGCCTTCGGGACTTAGCCCGGATAGA
**
80236591 GTCACTAGCATGAATGC
64 GTCACTAGCACAAATGC
* *
80236608 CTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTAGAG-
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAGAGT
80236672 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* * *
80236691 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGAGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATA
80236752 TCATCCGAAT
Statistics
Matches: 125, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
79 13 0.10
80 47 0.38
81 1 0.01
83 64 0.51
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAGAGT
CACTAGCACAAATGC
Found at i:80238718 original size:24 final size:24
Alignment explanation
Indices: 80238610--80238721 Score: 89
Period size: 24 Copynumber: 4.6 Consensus size: 24
80238600 TCTTACTTAT
**
80238610 TCGCACACATAGTGCCACGTTTCC
1 TCGCACACATAGTGCCACGTAACC
* * **
80238634 TCACACACATAGTGCCATGTAGTC
1 TCGCACACATAGTGCCACGTAACC
* **
80238658 TCGCACACATAGTGCCACTTAATTT
1 TCGCACACATAGTGCCACGTAA-CC
* ** *
80238683 TTGCACGTATAGTGCCACATAACC
1 TCGCACACATAGTGCCACGTAACC
*
80238707 TTGCACACATAGTGC
1 TCGCACACATAGTGC
80238722 TGAAATTTCT
Statistics
Matches: 69, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
24 50 0.72
25 19 0.28
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (24 bp):
TCGCACACATAGTGCCACGTAACC
Found at i:80246796 original size:15 final size:17
Alignment explanation
Indices: 80246768--80246803 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
80246758 CTTTTCATTG
80246768 CATTTAGCTTAATTT-A
1 CATTTAGCTTAATTTAA
80246784 CATTTAG-TTAATTTAA
1 CATTTAGCTTAATTTAA
80246800 CATT
1 CATT
80246804 CATCACCCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.33, C:0.11, G:0.06, T:0.50
Consensus pattern (17 bp):
CATTTAGCTTAATTTAA
Found at i:80251239 original size:37 final size:37
Alignment explanation
Indices: 80251197--80251268 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
80251187 GGGGAAGAAA
* *
80251197 TTTTGTAGGAATTTGCCTACGAGTTCATCCCATGTAC
1 TTTTGTAGGAATTTCCCTACAAGTTCATCCCATGTAC
80251234 TTTTGTAGGAATTTCCCTACAAGTTCATCCCATGT
1 TTTTGTAGGAATTTCCCTACAAGTTCATCCCATGT
80251269 CGTGATTGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (37 bp):
TTTTGTAGGAATTTCCCTACAAGTTCATCCCATGTAC
Found at i:80255280 original size:61 final size:61
Alignment explanation
Indices: 80255179--80255609 Score: 483
Period size: 61 Copynumber: 7.1 Consensus size: 61
80255169 GAAAGAAAAA
** * * * *
80255179 GCCTTTGTGGCAA-AACTCTAGATGGGAAAGCCTTGGTGGTGAGTTCTGGATATTAAAGAAT
1 GCCTTTGTGG-AACAACTCTAGACAGGAAAGCCTTTGTGGCGAGTACTGGATATTAAGGAAT
** * * * *
80255240 GCCTTTGTGGAACAACTCTAGACAACAAAACCTTTATGGTGAGTACTGGATATTAAAGAAT
1 GCCTTTGTGGAACAACTCTAGACAGGAAAGCCTTTGTGGCGAGTACTGGATATTAAGGAAT
* * * * * *
80255301 ACCTTTAT-GACACAACTCTGGA-TGGTAAAGCCTTTGTGGTGAGTACTTGATATTAAGGAAT
1 GCCTTTGTGGA-ACAACTCTAGACAGG-AAAGCCTTTGTGGCGAGTACTGGATATTAAGGAAT
* * * *
80255362 GCCTTTGTGGCACAACTATGGACAGGAAAGCCTTTGTGGCAAGTACTGGATATTAAGGAAT
1 GCCTTTGTGGAACAACTCTAGACAGGAAAGCCTTTGTGGCGAGTACTGGATATTAAGGAAT
* * * * *
80255423 GCCTTTGTGGTACAAGTCTAGACAGGAAAGCTTTTCTGGCGAGTACTAGATATTAAGGAAT
1 GCCTTTGTGGAACAACTCTAGACAGGAAAGCCTTTGTGGCGAGTACTGGATATTAAGGAAT
* *
80255484 GCCTTTGT-GACACAACTCTAGACAGGAAAGCCTTTGTGGCGAGTAGTGAATATTAAGGAAT
1 GCCTTTGTGGA-ACAACTCTAGACAGGAAAGCCTTTGTGGCGAGTACTGGATATTAAGGAAT
* * * * * *
80255545 GCCTTTATGGCACAACTCTGGATAGGAAAGCCTTTATGGCGAGTACTGGATATTAAGGAAC
1 GCCTTTGTGGAACAACTCTAGACAGGAAAGCCTTTGTGGCGAGTACTGGATATTAAGGAAT
80255606 GCCT
1 GCCT
80255610 AAAGCCTTTA
Statistics
Matches: 314, Mismatches: 49, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
60 5 0.02
61 305 0.97
62 4 0.01
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (61 bp):
GCCTTTGTGGAACAACTCTAGACAGGAAAGCCTTTGTGGCGAGTACTGGATATTAAGGAAT
Found at i:80255371 original size:32 final size:32
Alignment explanation
Indices: 80255330--80255434 Score: 94
Period size: 32 Copynumber: 3.4 Consensus size: 32
80255320 GGATGGTAAA
*
80255330 GCCTTTGTGGTGAGTACTTGATATTAAGGAAT
1 GCCTTTGTGGTAAGTACTTGATATTAAGGAAT
* * * *
80255362 GCCTTTGTGGCACA--ACTATG-GA--CAGGAAA
1 GCCTTTGTGGTA-AGTACT-TGATATTAAGGAAT
* *
80255391 GCCTTTGTGGCAAGTACTGGATATTAAGGAAT
1 GCCTTTGTGGTAAGTACTTGATATTAAGGAAT
80255423 GCCTTTGTGGTA
1 GCCTTTGTGGTA
80255435 CAAGTCTAGA
Statistics
Matches: 56, Mismatches: 10, Indels: 14
0.70 0.12 0.17
Matches are distributed among these distances:
28 1 0.02
29 18 0.32
30 4 0.07
31 4 0.07
32 28 0.50
33 1 0.02
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (32 bp):
GCCTTTGTGGTAAGTACTTGATATTAAGGAAT
Found at i:80255497 original size:183 final size:183
Alignment explanation
Indices: 80255179--80255609 Score: 569
Period size: 183 Copynumber: 2.4 Consensus size: 183
80255169 GAAAGAAAAA
* * * * * * *
80255179 GCCTTTGTGGCAAAACTCTAGATGGGAAAGCCTTGGTGGTGAGTTCTGGATATTAAAGAATGCCT
1 GCCTTTGTGGCACAACTCTGGATAGGAAAGCCTTTGTGGCGAGTACTGGATATTAAGGAATGCCT
* *
80255244 TTGTGGAACAACTCTAGACAACAAAACCTTTATGGTGAGTACTGGATATTAAAGAATACCTTTAT
66 TTGTGGAACAACTCTAGACAACAAAACCTTTATGGCGAGTACTAGATATTAAAGAATACCTTTAT
* * * *
80255309 GACACAACTCTGGA-TGGTAAAGCCTTTGTGGTGAGTACTTG-ATATTAAGGAAT
131 GACACAACTCTAGACAGG-AAAGCCTTTGTGGCGAGTA-GTGAATATTAAGGAAT
* * *
80255362 GCCTTTGTGGCACAACTATGGACAGGAAAGCCTTTGTGGCAAGTACTGGATATTAAGGAATGCCT
1 GCCTTTGTGGCACAACTCTGGATAGGAAAGCCTTTGTGGCGAGTACTGGATATTAAGGAATGCCT
* * ** * * * * * *
80255427 TTGTGGTACAAGTCTAGACAGGAAAGCTTTTCTGGCGAGTACTAGATATTAAGGAATGCCTTTGT
66 TTGTGGAACAACTCTAGACAACAAAACCTTTATGGCGAGTACTAGATATTAAAGAATACCTTTAT
80255492 GACACAACTCTAGACAGGAAAGCCTTTGTGGCGAGTAGTGAATATTAAGGAAT
131 GACACAACTCTAGACAGGAAAGCCTTTGTGGCGAGTAGTGAATATTAAGGAAT
* * *
80255545 GCCTTTATGGCACAACTCTGGATAGGAAAGCCTTTATGGCGAGTACTGGATATTAAGGAACGCCT
1 GCCTTTGTGGCACAACTCTGGATAGGAAAGCCTTTGTGGCGAGTACTGGATATTAAGGAATGCCT
80255610 AAAGCCTTTA
Statistics
Matches: 214, Mismatches: 32, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
182 2 0.01
183 210 0.98
184 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (183 bp):
GCCTTTGTGGCACAACTCTGGATAGGAAAGCCTTTGTGGCGAGTACTGGATATTAAGGAATGCCT
TTGTGGAACAACTCTAGACAACAAAACCTTTATGGCGAGTACTAGATATTAAAGAATACCTTTAT
GACACAACTCTAGACAGGAAAGCCTTTGTGGCGAGTAGTGAATATTAAGGAAT
Found at i:80255759 original size:61 final size:62
Alignment explanation
Indices: 80255633--80255809 Score: 173
Period size: 61 Copynumber: 2.9 Consensus size: 62
80255623 CAACTATTGG
**** * * * * * *
80255633 ATATTAAAGAATGCCTTTGCAACACAACTCTGGACAGGTAAGCCTTT-ATGGTAAGTATTGG
1 ATATTAAAGAATGCCTTTATGGCACAACTCTGGACAAGAAAGCCTTTGATGGCAAGAACTGA
*
80255694 ATATTAAAGAATGCCTTTATGGCACAACTCTGGACAAGAAAGCCTTTGCT-GCAAGAACTGA
1 ATATTAAAGAATGCCTTTATGGCACAACTCTGGACAAGAAAGCCTTTGATGGCAAGAACTGA
* * * * *
80255755 ATATTAAGGAATGCCTTTTTGGCATAATTCTGGA-TAGAAAAGCCTTTG-TGGCAAG
1 ATATTAAAGAATGCCTTTATGGCACAACTCTGGACAAG-AAAGCCTTTGATGGCAAG
80255810 TATTTGATGC
Statistics
Matches: 97, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
60 3 0.03
61 93 0.96
62 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.29
Consensus pattern (62 bp):
ATATTAAAGAATGCCTTTATGGCACAACTCTGGACAAGAAAGCCTTTGATGGCAAGAACTGA
Found at i:80255761 original size:161 final size:161
Alignment explanation
Indices: 80255471--80255770 Score: 422
Period size: 161 Copynumber: 1.9 Consensus size: 161
80255461 GCGAGTACTA
* ** * *
80255471 GATATTAAGGAATGCCTTTGTGACACAACTCTAGACAGGAAAGCCTTTGTGGCGAGTAGTGAATA
1 GATATTAAAGAATGCCTTTGCAACACAACTCTAGACAGGAAAGCCTTTATGGCAAGTAGTGAATA
* * * * * *
80255536 TTAAGGAATGCCTTTATGGCACAACTCTGGATAGGAAAGCCTTTATGGCGAGTACTGGATATTAA
66 TTAAAGAATGCCTTTATGGCACAACTCTGGACAAGAAAGCCTTTATGGCAAGAACTGAATATTAA
80255601 GGAACGCCTAAAGCCTTTATAACAACTATTG
131 GGAACGCCTAAAGCCTTTATAACAACTATTG
* * * * *
80255632 GATATTAAAGAATGCCTTTGCAACACAACTCTGGACAGGTAAGCCTTTATGGTAAGTATTGGATA
1 GATATTAAAGAATGCCTTTGCAACACAACTCTAGACAGGAAAGCCTTTATGGCAAGTAGTGAATA
*
80255697 TTAAAGAATGCCTTTATGGCACAACTCTGGACAAGAAAGCCTTTGCT-GCAAGAACTGAATATTA
66 TTAAAGAATGCCTTTATGGCACAACTCTGGACAAGAAAGCCTTT-ATGGCAAGAACTGAATATTA
*
80255761 AGGAATGCCT
130 AGGAACGCCT
80255771 TTTTGGCATA
Statistics
Matches: 120, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
161 119 0.99
162 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.27
Consensus pattern (161 bp):
GATATTAAAGAATGCCTTTGCAACACAACTCTAGACAGGAAAGCCTTTATGGCAAGTAGTGAATA
TTAAAGAATGCCTTTATGGCACAACTCTGGACAAGAAAGCCTTTATGGCAAGAACTGAATATTAA
GGAACGCCTAAAGCCTTTATAACAACTATTG
Found at i:80255789 original size:222 final size:222
Alignment explanation
Indices: 80255408--80255811 Score: 540
Period size: 222 Copynumber: 1.8 Consensus size: 222
80255398 TGGCAAGTAC
* **** * * * *
80255408 TGGATATTAAGGAATGCCTTTGTGGTACAAGTCTAGACAGGAAAGCTTTTCTGGCGAGTACTAGA
1 TGGATATTAAAGAATGCCTTTGCAACACAACTCTAGACAGGAAAGCCTTTATGGCAAGTACTAGA
* * * * * *
80255473 TATTAAGGAATGCCTTTGTGACACAACTCTAGACAGGAAAGCCTTTGTGGCGAGTAGTGAATATT
66 TATTAAAGAATGCCTTTATGACACAACTCTAGACAAGAAAGCCTTTGTGGCAAGAACTGAATATT
* *
80255538 AAGGAATGCCTTTATGGCACAACTCTGGATAGGAAAGCCTTTATGGCGAGTACTGGATATTAAGG
131 AAGGAATGCCTTTATGGCACAACTCTGGATAGAAAAGCCTTTATGGCAAGTACTGGATATTAAGG
80255603 AACGCCTAAAGCCTTTATAACAACTAT
196 AACGCCTAAAGCCTTTATAACAACTAT
* * * * *
80255630 TGGATATTAAAGAATGCCTTTGCAACACAACTCTGGACAGGTAAGCCTTTATGGTAAGTATTGGA
1 TGGATATTAAAGAATGCCTTTGCAACACAACTCTAGACAGGAAAGCCTTTATGGCAAGTACTAGA
* *
80255695 TATTAAAGAATGCCTTTATGGCACAACTCTGGACAAGAAAGCCTTTGCT-GCAAGAACTGAATAT
66 TATTAAAGAATGCCTTTATGACACAACTCTAGACAAGAAAGCCTTTG-TGGCAAGAACTGAATAT
* * * *
80255759 TAAGGAATGCCTTTTTGGCATAATTCTGGATAGAAAAGCCTTTGTGGCAAGTA
130 TAAGGAATGCCTTTATGGCACAACTCTGGATAGAAAAGCCTTTATGGCAAGTA
80255812 TTTGATGCAA
Statistics
Matches: 153, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
222 152 0.99
223 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.28
Consensus pattern (222 bp):
TGGATATTAAAGAATGCCTTTGCAACACAACTCTAGACAGGAAAGCCTTTATGGCAAGTACTAGA
TATTAAAGAATGCCTTTATGACACAACTCTAGACAAGAAAGCCTTTGTGGCAAGAACTGAATATT
AAGGAATGCCTTTATGGCACAACTCTGGATAGAAAAGCCTTTATGGCAAGTACTGGATATTAAGG
AACGCCTAAAGCCTTTATAACAACTAT
Found at i:80272173 original size:13 final size:13
Alignment explanation
Indices: 80272155--80272183 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
80272145 GGTTGTTTAT
80272155 TAAACTAATTAAC
1 TAAACTAATTAAC
80272168 TAAACTAATTAAC
1 TAAACTAATTAAC
80272181 TAA
1 TAA
80272184 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:80280589 original size:13 final size:13
Alignment explanation
Indices: 80280571--80280599 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
80280561 GGTTGTTTAT
80280571 TAAACTAATTAAC
1 TAAACTAATTAAC
80280584 TAAACTAATTAAC
1 TAAACTAATTAAC
80280597 TAA
1 TAA
80280600 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:80282913 original size:46 final size:45
Alignment explanation
Indices: 80282863--80283038 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 45
80282853 TGGTTGAGCA
80282863 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
80282909 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
80282954 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
80283002 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80283039 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:80283019 original size:93 final size:93
Alignment explanation
Indices: 80282860--80283031 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
80282850 GGATGGTTGA
* *
80282860 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80282925 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
80282953 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80283018 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
80283032 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80288609 original size:3 final size:3
Alignment explanation
Indices: 80288601--80288653 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
80288591 TGCATATTTA
80288601 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
80288649 ATT AT
1 ATT AT
80288654 AAGACTATTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:80292504 original size:12 final size:12
Alignment explanation
Indices: 80292487--80292512 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
80292477 CCTAACACAC
80292487 CCGTGTGCTAGG
1 CCGTGTGCTAGG
80292499 CCGTGTGCTAGG
1 CCGTGTGCTAGG
80292511 CC
1 CC
80292513 ATGCCAAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.31, G:0.38, T:0.23
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:80309573 original size:26 final size:26
Alignment explanation
Indices: 80309537--80309620 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
80309527 CATGAAATTC
80309537 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
80309563 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
80309589 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
80309615 TTATCA
1 TTATCA
80309621 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:80313925 original size:17 final size:18
Alignment explanation
Indices: 80313895--80313940 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
80313885 ATTTAAATTG
80313895 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCGTTTT
80313913 CGGTCGC-GTCGCG-TTT
1 CGGTCGCGGTCGCGTTTT
80313929 --GTCGCGGTCGCG
1 CGGTCGCGGTCGCG
80313941 GACATAACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
16 3 0.11
17 6 0.22
18 7 0.26
ACGTcount: A:0.00, C:0.30, G:0.41, T:0.28
Consensus pattern (18 bp):
CGGTCGCGGTCGCGTTTT
Found at i:80315752 original size:14 final size:14
Alignment explanation
Indices: 80315714--80315756 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
80315704 TAAAATGTAC
80315714 AATATAATTAAA-T
1 AATATAATTAAATT
80315727 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
80315742 AA-ATAATTTAATT
1 AATATAATTAAATT
80315755 AA
1 AA
80315757 CTGTTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:80318242 original size:3 final size:3
Alignment explanation
Indices: 80318236--80318332 Score: 86
Period size: 3 Copynumber: 32.0 Consensus size: 3
80318226 TAAAAAAATT
**
80318236 TAA TAA TAA TAA TAA TAA TAA TGG TAA TAAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA
* * * * * ** * *
80318282 TAA TAA TCA TGA TGA TGA TGA TGG TAT TAA TAA TAA TAA TAA CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
80318330 TAA
1 TAA
80318333 AAATCTTAAA
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
3 78 0.96
4 3 0.04
ACGTcount: A:0.57, C:0.02, G:0.08, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:80319985 original size:20 final size:22
Alignment explanation
Indices: 80319962--80320005 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
80319952 AATAATAACT
80319962 AAAAAATA-TTAAAAAAT-AAA
1 AAAAAATATTTAAAAAATGAAA
* *
80319982 AAAATATATTTAATAAATGAAA
1 AAAAAATATTTAAAAAATGAAA
80320004 AA
1 AA
80320006 TCAAATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 8 0.40
22 5 0.25
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (22 bp):
AAAAAATATTTAAAAAATGAAA
Found at i:80328054 original size:19 final size:19
Alignment explanation
Indices: 80328026--80328063 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
80328016 CCACTGTCAC
80328026 CCATCATAATCAAATTTGT
1 CCATCATAATCAAATTTGT
*
80328045 CCATCGTAATCAAATTTGT
1 CCATCATAATCAAATTTGT
80328064 TATTAACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.37
Consensus pattern (19 bp):
CCATCATAATCAAATTTGT
Found at i:80331530 original size:25 final size:25
Alignment explanation
Indices: 80331476--80331561 Score: 84
Period size: 25 Copynumber: 3.5 Consensus size: 25
80331466 GGTTATCGAT
* * * *
80331476 TTCAGTTCTTATGAGCTTACCGATA
1 TTCAGCTCGTATGAGCTTACTGTTA
*
80331501 CTCAGCTCGTATGAGCTTACTGTTA
1 TTCAGCTCGTATGAGCTTACTGTTA
* * *
80331526 TTCAGCTCGGAGGAGCTTACTATT-
1 TTCAGCTCGTATGAGCTTACTGTTA
*
80331550 TACAGCTCGTAT
1 TTCAGCTCGTAT
80331562 AAGCATACAT
Statistics
Matches: 49, Mismatches: 12, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
24 9 0.18
25 40 0.82
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (25 bp):
TTCAGCTCGTATGAGCTTACTGTTA
Found at i:80337859 original size:53 final size:53
Alignment explanation
Indices: 80337768--80337871 Score: 163
Period size: 53 Copynumber: 2.0 Consensus size: 53
80337758 CGTATATCCC
* * *
80337768 TATATGTTGCATTGTGGGGTTAAACTCTTTGCATGATAAATCCATTATCTTCA
1 TATATCTTGCATTGTGGGGTTAAACTCTTCGCACGATAAATCCATTATCTTCA
* *
80337821 TATATCTTGTATTGTGGGGTTAAAGTCTTCGCACGATAAATCCATTATCTT
1 TATATCTTGCATTGTGGGGTTAAACTCTTCGCACGATAAATCCATTATCTT
80337872 AAAATCTTAG
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.41
Consensus pattern (53 bp):
TATATCTTGCATTGTGGGGTTAAACTCTTCGCACGATAAATCCATTATCTTCA
Found at i:80338231 original size:23 final size:24
Alignment explanation
Indices: 80338205--80338252 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
80338195 ATTTTGATAT
*
80338205 TTTTCTTAT-AATTTCATACTTAA
1 TTTTCTTATCAATTTCACACTTAA
*
80338228 TTTTTTTATCCAATTTCACACTTAA
1 TTTTCTTAT-CAATTTCACACTTAA
80338253 ACTTTTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 8 0.38
25 13 0.62
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (24 bp):
TTTTCTTATCAATTTCACACTTAA
Found at i:80340547 original size:17 final size:18
Alignment explanation
Indices: 80340518--80340552 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
80340508 TTTGGTTTCG
*
80340518 GTTTTTGATAATTTTTAC
1 GTTTTTGATAATTGTTAC
80340536 GTTTTTGA-AATTGTTAC
1 GTTTTTGATAATTGTTAC
80340553 TTCGAATACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.23, C:0.06, G:0.14, T:0.57
Consensus pattern (18 bp):
GTTTTTGATAATTGTTAC
Found at i:80341765 original size:45 final size:45
Alignment explanation
Indices: 80341701--80341787 Score: 165
Period size: 45 Copynumber: 1.9 Consensus size: 45
80341691 CTTAAAATAT
80341701 ATATGTATATGCGATTATATAAATCAATGTGGTTTCGAATTTCTC
1 ATATGTATATGCGATTATATAAATCAATGTGGTTTCGAATTTCTC
*
80341746 ATATGTATATTCGATTATATAAATCAATGTGGTTTCGAATTT
1 ATATGTATATGCGATTATATAAATCAATGTGGTTTCGAATTT
80341788 GAGAACATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.44
Consensus pattern (45 bp):
ATATGTATATGCGATTATATAAATCAATGTGGTTTCGAATTTCTC
Found at i:80341782 original size:24 final size:24
Alignment explanation
Indices: 80341712--80341783 Score: 64
Period size: 24 Copynumber: 3.1 Consensus size: 24
80341702 TATGTATATG
80341712 CGATTATATAAATCAATGTGGTTT
1 CGATTATATAAATCAATGTGGTTT
** *
80341736 CGA--AT-T-TCTCATATGT-ATATT
1 CGATTATATAAATCA-ATGTGGT-TT
80341757 CGATTATATAAATCAATGTGGTTT
1 CGATTATATAAATCAATGTGGTTT
80341781 CGA
1 CGA
80341784 ATTTGAGAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 14
0.64 0.11 0.25
Matches are distributed among these distances:
20 4 0.11
21 10 0.29
22 2 0.06
23 2 0.06
24 13 0.37
25 4 0.11
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (24 bp):
CGATTATATAAATCAATGTGGTTT
Found at i:80346401 original size:19 final size:19
Alignment explanation
Indices: 80346377--80346415 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
80346367 TGAACTGGTG
80346377 ATTGACTATCACCCAGGAA
1 ATTGACTATCACCCAGGAA
*
80346396 ATTGACTATCACCCGGGAA
1 ATTGACTATCACCCAGGAA
80346415 A
1 A
80346416 GGCTAATGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.21
Consensus pattern (19 bp):
ATTGACTATCACCCAGGAA
Found at i:80348525 original size:17 final size:18
Alignment explanation
Indices: 80348496--80348530 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
80348486 TTTGGTTTCG
*
80348496 GTTTTTGATAATTTTTAC
1 GTTTTTGATAATTGTTAC
80348514 GTTTTTGA-AATTGTTAC
1 GTTTTTGATAATTGTTAC
80348531 TTCGAATACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.23, C:0.06, G:0.14, T:0.57
Consensus pattern (18 bp):
GTTTTTGATAATTGTTAC
Found at i:80351829 original size:28 final size:27
Alignment explanation
Indices: 80351772--80351859 Score: 72
Period size: 28 Copynumber: 3.1 Consensus size: 27
80351762 ATTAACCTTT
* * *
80351772 TATACATTATTTACTTTAGA-TATTTTTA
1 TATAAATTATTTA-TTTAAACTA-TTATA
80351800 TATAAATTATTTATTTTAAACTATTATA
1 TATAAATTATTTA-TTTAAACTATTATA
*
80351828 TATTTTAAATT-TTCATTTAAACTATTATA
1 TA---TAAATTATTTATTTAAACTATTATA
80351857 TAT
1 TAT
80351860 TTTAAATTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
26 1 0.02
28 23 0.45
29 18 0.35
30 3 0.06
31 6 0.12
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.56
Consensus pattern (27 bp):
TATAAATTATTTATTTAAACTATTATA
Found at i:80351831 original size:17 final size:17
Alignment explanation
Indices: 80351805--80351865 Score: 69
Period size: 17 Copynumber: 3.9 Consensus size: 17
80351795 TTTTATATAA
*
80351805 ATTATTTATTTTAAACT
1 ATTATATATTTTAAACT
80351822 ATTATATATTTTAAA-T
1 ATTATATATTTTAAACT
*
80351838 -TT-T-CA-TTTAAACT
1 ATTATATATTTTAAACT
80351851 ATTATATATTTTAAA
1 ATTATATATTTTAAA
80351866 TTTTCATGTA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
12 6 0.17
13 2 0.06
14 3 0.08
15 3 0.08
16 2 0.06
17 20 0.56
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTATATATTTTAAACT
Found at i:80351847 original size:29 final size:29
Alignment explanation
Indices: 80351814--80351872 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
80351804 AATTATTTAT
80351814 TTTAAACTATTATATATTTTAAATTTTCA
1 TTTAAACTATTATATATTTTAAATTTTCA
80351843 TTTAAACTATTATATATTTTAAATTTTCA
1 TTTAAACTATTATATATTTTAAATTTTCA
80351872 T
1 T
80351873 GTATAATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (29 bp):
TTTAAACTATTATATATTTTAAATTTTCA
Found at i:80352022 original size:81 final size:80
Alignment explanation
Indices: 80351919--80352080 Score: 182
Period size: 81 Copynumber: 2.0 Consensus size: 80
80351909 CATTTTAAAA
* * * * * **
80351919 TTTTTGTATTACTTATTTTAAGTTGTTTTA-TTATTATAAATTATAAATTTTTCTTTTTTATACA
1 TTTTTATATTAATTACTTTAAGTCGTTTCATTTATTATAAATTATAAA-CCTT-TTTTTTATACA
*
80351983 TTATTTATTCGAAACTG
64 TTATTTATTCAAAACTG
** * *
80352000 TTTTTATATTAATTACTTTAAGTCGTTTCATTTATTATCCATTTTAAACCTTTTTTTTATATATT
1 TTTTTATATTAATTACTTTAAGTCGTTTCATTTATTATAAATTATAAACCTTTTTTTTATACATT
*
80352065 ATTTATTTAAAACTG
66 ATTTATTCAAAACTG
80352080 T
1 T
80352081 CTTATTATTT
Statistics
Matches: 67, Mismatches: 13, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
80 26 0.39
81 27 0.40
82 14 0.21
ACGTcount: A:0.28, C:0.08, G:0.05, T:0.59
Consensus pattern (80 bp):
TTTTTATATTAATTACTTTAAGTCGTTTCATTTATTATAAATTATAAACCTTTTTTTTATACATT
ATTTATTCAAAACTG
Found at i:80352107 original size:22 final size:24
Alignment explanation
Indices: 80352059--80352118 Score: 70
Period size: 22 Copynumber: 2.6 Consensus size: 24
80352049 CTTTTTTTTA
*
80352059 TATATTATTTATTTAAAACT-GTC
1 TATATTATTTATTTAAAACTATTC
* * *
80352082 T-TATTATTTATTTTAAATTATTT
1 TATATTATTTATTTAAAACTATTC
80352105 TATATTATTTATTT
1 TATATTATTTATTT
80352119 CATTTTTCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
22 16 0.52
23 3 0.10
24 12 0.39
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (24 bp):
TATATTATTTATTTAAAACTATTC
Found at i:80364050 original size:44 final size:44
Alignment explanation
Indices: 80363879--80364042 Score: 177
Period size: 44 Copynumber: 3.7 Consensus size: 44
80363869 TCATCATAGT
* * * * **
80363879 GAATCTTATCTCTCTAAAGTTGCAGTGAAGCAGATTAAAACCAC
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTCAC
* * *
80363923 AAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTCAC
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTCAC
* * *
80363967 GAATCTCATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGTTAC
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTCAC
* * *
80364011 -AAGTTTTATGTCCCTGAAGTTGTAGTGGAGCA
1 GAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCA
80364043 AACTGAAGAT
Statistics
Matches: 99, Mismatches: 20, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
43 2 0.02
44 97 0.98
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (44 bp):
GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTCAC
Done.