Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 242 of 344
Found at i:80364253 original size:44 final size:44
Alignment explanation
Indices: 80363884--80364234 Score: 127
Period size: 44 Copynumber: 7.8 Consensus size: 44
80363874 ATAGTGAATC
* * * **
80363884 TTATCTCTCTAAAGTTGCAGTGAAGCAGATT-AAAACCACAAACC
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGA-CACAAATA
* * * * *
80363928 TTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTCACGAATC
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGACACAAATA
* * * ** * *
80363972 TCATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTT
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGACACAAATA
* * * * * * *
80364016 TTATGTCCCTGAAGTTGTAGTGGAGCAAACTGAAGATAGAAA-A
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGACACAAATA
* * * * * * *
80364059 TCATATCCCTTTTGAAGTTGCAGTGGAGCGGATTAAAG-CTATAAATC
1 TTATCTCCC---TAAAGTTGCAGTGGAGCAGATTGAAGAC-ACAAATA
* ** * * * * ** * * *
80364106 CTATAC-CTTTGAAGCTGCAGTAGG-TCGGATCAAATCCATCATGGTAAATC
1 TTAT-CTCCCTAAAGTTGCAGT-GGAGCAGATTGAA--GA-CA---CAAATA
* * *
80364156 TTATCTCCTTAAAGTTGCAGTGGAGTAGATTGGAGACACAAATA
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGACACAAATA
*
80364200 TTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAG
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAG
80364235 TTATGAGTAT
Statistics
Matches: 229, Mismatches: 61, Indels: 34
0.71 0.19 0.10
Matches are distributed among these distances:
43 7 0.03
44 157 0.69
45 4 0.02
46 25 0.11
47 6 0.03
48 2 0.01
49 3 0.01
50 25 0.11
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (44 bp):
TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGACACAAATA
Found at i:80364601 original size:21 final size:21
Alignment explanation
Indices: 80364576--80364617 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
80364566 TCAGTCCATT
*
80364576 TTTACAAACAT-CATGGCCCAA
1 TTTAC-AACATGCATAGCCCAA
80364597 TTTACAACATGCATAGCCCAA
1 TTTACAACATGCATAGCCCAA
80364618 ATAAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.38, C:0.29, G:0.10, T:0.24
Consensus pattern (21 bp):
TTTACAACATGCATAGCCCAA
Found at i:80364813 original size:13 final size:14
Alignment explanation
Indices: 80364789--80364817 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
80364779 ACGCAAGCGA
80364789 AAGAATCCAAGCAG
1 AAGAATCCAAGCAG
80364803 AAGAA-CCAAGCAG
1 AAGAATCCAAGCAG
80364816 AA
1 AA
80364818 ACAACAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.55, C:0.21, G:0.21, T:0.03
Consensus pattern (14 bp):
AAGAATCCAAGCAG
Found at i:80366224 original size:23 final size:21
Alignment explanation
Indices: 80366191--80366242 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 21
80366181 ATTTTATAGG
*
80366191 TTATTCATTTTAAAATTTTTGTA
1 TTATT-ATTTTAAAATGTTT-TA
*
80366214 TTACTTATTTTAAGATGTTTTA
1 TTA-TTATTTTAAAATGTTTTA
80366236 TTATTAT
1 TTATTAT
80366243 ATATTTTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 4 0.15
22 5 0.19
23 15 0.58
24 2 0.08
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.62
Consensus pattern (21 bp):
TTATTATTTTAAAATGTTTTA
Found at i:80366367 original size:24 final size:23
Alignment explanation
Indices: 80366340--80366405 Score: 89
Period size: 22 Copynumber: 2.8 Consensus size: 23
80366330 TTTAAACCCT
80366340 TTTTTATATATTATTTATTTAAAA
1 TTTTT-TATATTATTTATTTAAAA
* *
80366364 TTTTCT-TATTATTTATTTTAAA
1 TTTTTTATATTATTTATTTAAAA
80366386 TTGTTTTATATTATTTATTT
1 TT-TTTTATATTATTTATTT
80366406 CATTTTTCTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 17 0.46
23 4 0.11
24 16 0.43
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (23 bp):
TTTTTTATATTATTTATTTAAAA
Found at i:80371072 original size:19 final size:19
Alignment explanation
Indices: 80371050--80371116 Score: 57
Period size: 20 Copynumber: 3.5 Consensus size: 19
80371040 ATTTTGAATA
80371050 TTATTTAATATTTTTTCAT
1 TTATTTAATATTTTTTCAT
***
80371069 TTATTTTAA-A-TTTCAAAT
1 TTA-TTTAATATTTTTTCAT
80371087 ATTATTTAATATTTTTTGCAT
1 -TTATTTAATATTTTTT-CAT
*
80371108 TTATGTAAT
1 TTATTTAAT
80371117 TTTAATTAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 9
0.69 0.13 0.17
Matches are distributed among these distances:
18 10 0.28
19 8 0.22
20 16 0.44
21 2 0.06
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.61
Consensus pattern (19 bp):
TTATTTAATATTTTTTCAT
Found at i:80371088 original size:38 final size:39
Alignment explanation
Indices: 80371034--80371111 Score: 131
Period size: 38 Copynumber: 2.0 Consensus size: 39
80371024 TAATGGTTTG
**
80371034 TTTTAAATTTTGAATATTATTTAATATTTTTT-CATTTA
1 TTTTAAATTTCAAATATTATTTAATATTTTTTGCATTTA
80371072 TTTTAAATTTCAAATATTATTTAATATTTTTTGCATTTA
1 TTTTAAATTTCAAATATTATTTAATATTTTTTGCATTTA
80371111 T
1 T
80371112 GTAATTTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
38 30 0.81
39 7 0.19
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.62
Consensus pattern (39 bp):
TTTTAAATTTCAAATATTATTTAATATTTTTTGCATTTA
Found at i:80372082 original size:7 final size:7
Alignment explanation
Indices: 80372070--80372094 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
80372060 AGTCGTTTCA
80372070 TATTTAG
1 TATTTAG
80372077 TATTTAG
1 TATTTAG
80372084 TATTTAG
1 TATTTAG
80372091 TATT
1 TATT
80372095 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:80375187 original size:40 final size:39
Alignment explanation
Indices: 80375040--80375205 Score: 144
Period size: 40 Copynumber: 4.2 Consensus size: 39
80375030 GCTAATCGGG
*
80375040 GTCTAAATCCGAGCTTGGTCTCAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCAAGGGCTTTTGAGCCAGT
* *
80375080 G-CTAATAACCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTC-AAGGGC-TTTT-GAGCCAGT
* * *
80375123 GTCATAA-CCG-GACTTAGT-TGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAG-CTTAGTCTCAAGGGCTTTTGAGCCAGT
* *
80375161 AGTCTAATCCGAGCTTGGTCTCAAGGGCTTTTGAGCCGGT
1 -GTCTAATCCGAGCTTAGTCTCAAGGGCTTTTGAGCCAGT
80375201 G-CTAA
1 GTCTAA
80375206 GAGTCGGACT
Statistics
Matches: 102, Mismatches: 12, Indels: 26
0.73 0.09 0.19
Matches are distributed among these distances:
38 18 0.18
39 16 0.16
40 35 0.34
41 7 0.07
42 13 0.13
43 9 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (39 bp):
GTCTAATCCGAGCTTAGTCTCAAGGGCTTTTGAGCCAGT
Found at i:80389156 original size:41 final size:43
Alignment explanation
Indices: 80389099--80389252 Score: 127
Period size: 44 Copynumber: 3.6 Consensus size: 43
80389089 ATCATAGTGA
*
80389099 TTATCTCTCT-AAGTTGCAGT-GAGCAGTT-AAACCACAAACC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGTTGAAACCACAAACC
** * *
80389139 TTATCTCCCTGAAGTTGC-GTGGAGCAGGTTGAAGTCACGAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCA-GTTGAAACCACAAACC
* * *** ***
80389182 TCATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAG-TTGAAACCACAAACC
* *
80389226 TTATGTCCCTGAAGTTGTAGTGGAGCA
1 TTATCTCCCTGAAGTTGCAGTGGAGCA
80389253 AACTGAAGAT
Statistics
Matches: 93, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
40 11 0.12
41 12 0.13
42 3 0.03
43 25 0.27
44 42 0.45
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (43 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGTTGAAACCACAAACC
Found at i:80389216 original size:44 final size:44
Alignment explanation
Indices: 80389141--80389252 Score: 138
Period size: 44 Copynumber: 2.6 Consensus size: 44
80389131 CACAAACCTT
*
80389141 ATCTCCCTGAAGTTGC-GTGGAGCAGGTTGAAGTCACGAA-TCTC
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTCAC-AAGTCTC
* * * *
80389184 ATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTTTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTCACAAGTCTC
* *
80389228 ATGTCCCTGAAGTTGTAGTGGAGCA
1 ATCTCCCTGAAGTTGCAGTGGAGCA
80389253 AACTGAAGAT
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
43 17 0.29
44 42 0.71
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (44 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTCACAAGTCTC
Found at i:80391389 original size:22 final size:21
Alignment explanation
Indices: 80391357--80391407 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 21
80391347 ATTTTATAGG
80391357 TTATTCATTTTAAAAT-TTTGTA
1 TTATT-ATTTTAAAATGTTT-TA
*
80391379 TTACTTATTTTAAGATGTTTTA
1 TTA-TTATTTTAAAATGTTTTA
80391401 TTATTAT
1 TTATTAT
80391408 ATATTTTAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 4 0.15
22 17 0.65
23 5 0.19
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.61
Consensus pattern (21 bp):
TTATTATTTTAAAATGTTTTA
Found at i:80391535 original size:22 final size:24
Alignment explanation
Indices: 80391508--80391567 Score: 88
Period size: 22 Copynumber: 2.6 Consensus size: 24
80391498 ACCCTTTTTA
80391508 TATATTATTTATTTAAAATT-TTC
1 TATATTATTTATTTAAAATTGTTC
* *
80391531 T-TATTATTTATTTTAAATTGTTT
1 TATATTATTTATTTAAAATTGTTC
80391554 TATATTATTTATTT
1 TATATTATTTATTT
80391568 CATTTTTCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
22 17 0.52
23 4 0.12
24 12 0.36
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (24 bp):
TATATTATTTATTTAAAATTGTTC
Found at i:80391564 original size:24 final size:24
Alignment explanation
Indices: 80391434--80391567 Score: 114
Period size: 24 Copynumber: 5.5 Consensus size: 24
80391424 TTTTTTATAC
*
80391434 ATTATTTATTTGAAATTGTTTTAT
1 ATTATTTATTTTAAATTGTTTTAT
* * * *
80391458 ATTAGTTACTTTAAGTCGTTTTAT
1 ATTATTTATTTTAAATTGTTTTAT
80391482 -TTATTATCCATTTTAAACCCTT-TTTATAT
1 ATTATT-T--ATTTTAAA---TTGTTT-TAT
* *
80391511 ATTATTTATTTAAAATT-TTCT-T
1 ATTATTTATTTTAAATTGTTTTAT
80391533 ATTATTTATTTTAAATTGTTTTAT
1 ATTATTTATTTTAAATTGTTTTAT
80391557 ATTATTTATTT
1 ATTATTTATTT
80391568 CATTTTTCTT
Statistics
Matches: 87, Mismatches: 13, Indels: 20
0.73 0.11 0.17
Matches are distributed among these distances:
22 17 0.20
23 8 0.09
24 36 0.41
26 6 0.07
27 7 0.08
28 3 0.03
29 5 0.06
30 5 0.06
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.61
Consensus pattern (24 bp):
ATTATTTATTTTAAATTGTTTTAT
Found at i:80396223 original size:19 final size:19
Alignment explanation
Indices: 80396201--80396267 Score: 57
Period size: 20 Copynumber: 3.5 Consensus size: 19
80396191 ATTTTGAATA
80396201 TTATTTAATATTTTTTCAT
1 TTATTTAATATTTTTTCAT
***
80396220 TTATTTTAA-A-TTTCAAAT
1 TTA-TTTAATATTTTTTCAT
80396238 ATTATTTAATATTTTTTGCAT
1 -TTATTTAATATTTTTT-CAT
*
80396259 TTATGTAAT
1 TTATTTAAT
80396268 TTTAATTAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 9
0.69 0.13 0.17
Matches are distributed among these distances:
18 10 0.28
19 8 0.22
20 16 0.44
21 2 0.06
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.61
Consensus pattern (19 bp):
TTATTTAATATTTTTTCAT
Found at i:80396239 original size:38 final size:39
Alignment explanation
Indices: 80396185--80396262 Score: 131
Period size: 38 Copynumber: 2.0 Consensus size: 39
80396175 TAATGGTTTG
**
80396185 TTTTAAATTTTGAATATTATTTAATATTTTTT-CATTTA
1 TTTTAAATTTCAAATATTATTTAATATTTTTTGCATTTA
80396223 TTTTAAATTTCAAATATTATTTAATATTTTTTGCATTTA
1 TTTTAAATTTCAAATATTATTTAATATTTTTTGCATTTA
80396262 T
1 T
80396263 GTAATTTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
38 30 0.81
39 7 0.19
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.62
Consensus pattern (39 bp):
TTTTAAATTTCAAATATTATTTAATATTTTTTGCATTTA
Found at i:80397233 original size:7 final size:7
Alignment explanation
Indices: 80397221--80397245 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
80397211 AGTCGTTTCA
80397221 TATTTAG
1 TATTTAG
80397228 TATTTAG
1 TATTTAG
80397235 TATTTAG
1 TATTTAG
80397242 TATT
1 TATT
80397246 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:80400318 original size:42 final size:40
Alignment explanation
Indices: 80400229--80400331 Score: 100
Period size: 42 Copynumber: 2.5 Consensus size: 40
80400219 AGCTTGGTCT
* *
80400229 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTT
1 CGAAGGGCTTTTGAGCCAGTGC-AATAACCGAACTTAATTC
* * *
80400270 CAAAGGGCTTTTTAGAGCCAGTG-ACATAACTGGACTTAATTC
1 CGAAGGGC-TTTT-GAGCCAGTGCA-ATAACCGAACTTAATTC
* *
80400312 CGAAGGGCCTTCGAGCCAGT
1 CGAAGGGCTTTTGAGCCAGT
80400332 AGTCTAATCC
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
40 8 0.16
41 10 0.20
42 24 0.47
43 9 0.18
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (40 bp):
CGAAGGGCTTTTGAGCCAGTGCAATAACCGAACTTAATTC
Found at i:80408629 original size:42 final size:41
Alignment explanation
Indices: 80408542--80408635 Score: 111
Period size: 42 Copynumber: 2.3 Consensus size: 41
80408532 AGCTTGGTCT
* * *
80408542 CGAAGGGC-TTTTGAGCCAGTGCTAATAACTGAACTTAGTTT
1 CGAAGGGCTTTTTGAGCCAGTGC-AATAACCGAACTTAATTC
*
80408583 CGAAGGGCTTTTTAGAGCCAGTG-ACATAACCGGACTTAATTC
1 CGAAGGGCTTTTT-GAGCCAGTGCA-ATAACCGAACTTAATTC
80408625 CGAAGGGCTTT
1 CGAAGGGCTTT
80408636 CGAGCTAGTA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
41 9 0.20
42 28 0.61
43 9 0.20
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (41 bp):
CGAAGGGCTTTTTGAGCCAGTGCAATAACCGAACTTAATTC
Found at i:80415951 original size:42 final size:42
Alignment explanation
Indices: 80415828--80415999 Score: 174
Period size: 42 Copynumber: 4.1 Consensus size: 42
80415818 ATAAAATTTT
*
80415828 CTAGGC-ATAAAG-CCTAGTATAATACACTGGCACAGAA-CTTG
1 CTAGGCAATAAAGCCCTA-TATAATACACTGGCACA-AAGCCTG
* * * * *
80415869 CTAGGCAAT--AGGCCTGACATAAGACACTAGCATAAAGCCTG
1 CTAGGCAATAAAGCCCT-ATATAATACACTGGCACAAAGCCTG
* *
80415910 CTAGGCAATAAAGCCCTATATAATACACCGGCATAAAGCCTG
1 CTAGGCAATAAAGCCCTATATAATACACTGGCACAAAGCCTG
* * * *
80415952 CTAGGCAATAAAGCCCAATTTAATACACTGGCACAAGGCTTG
1 CTAGGCAATAAAGCCCTATATAATACACTGGCACAAAGCCTG
80415994 CTAGGC
1 CTAGGC
80416000 TCAAAGTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
40 4 0.04
41 34 0.31
42 66 0.61
43 5 0.05
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (42 bp):
CTAGGCAATAAAGCCCTATATAATACACTGGCACAAAGCCTG
Found at i:80417900 original size:20 final size:20
Alignment explanation
Indices: 80417875--80417914 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
80417865 ATGTTCTCTT
80417875 TATTTCTATCCCTGTTTCAA
1 TATTTCTATCCCTGTTTCAA
80417895 TATTTCTATCCCTGTTTCAA
1 TATTTCTATCCCTGTTTCAA
80417915 GCTAGGGTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.25, G:0.05, T:0.50
Consensus pattern (20 bp):
TATTTCTATCCCTGTTTCAA
Found at i:80420199 original size:22 final size:22
Alignment explanation
Indices: 80420173--80420217 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
80420163 AATTCCTAGA
80420173 ACTCAGGCAGGGAAATAAGACT
1 ACTCAGGCAGGGAAATAAGACT
80420195 ACTCAGGCAGGGAAATAAGACT
1 ACTCAGGCAGGGAAATAAGACT
80420217 A
1 A
80420218 TGTCAGAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.18, G:0.27, T:0.13
Consensus pattern (22 bp):
ACTCAGGCAGGGAAATAAGACT
Found at i:80426608 original size:46 final size:47
Alignment explanation
Indices: 80426478--80426738 Score: 211
Period size: 46 Copynumber: 5.6 Consensus size: 47
80426468 ACATCGACGC
* ** * *
80426478 CATGTCCCAGACATGGTCTTACACAAGTTTAGCATATCTGT-GTTGATG
1 CATGTCCCAGACATGGTCTTACACTAGCATA-CATCTC-GTAGTCGATG
* *
80426526 CCATGTCCTAGACATGGTCTTACACT-G-ACACATCTCGTAGTCGATG
1 -CATGTCCCAGACATGGTCTTACACTAGCATACATCTCGTAGTCGATG
*
80426572 CATGTCCCAGACAT-GTCTTACACTAGCATACATCTCG-AGGTTGATG
1 CATGTCCCAGACATGGTCTTACACTAGCATACATCTCGTA-GTCGATG
* * * *
80426618 CATGTTCGAGACAT-GTCTTACACTAGCACT-CATCTCAATA-CCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCA-TACATCTC-GTAGTCGATG
* * * * *
80426664 CCATGTCCTAGACATGGTCTTACACTGGC-TCTCATAAT-GTGGTCGATG
1 -CATGTCCCAGACATGGTCTTACACTAGCAT-ACAT-CTCGTAGTCGATG
80426712 CATGTCCCAGACAT-GTCTTACACTAGC
1 CATGTCCCAGACATGGTCTTACACTAGC
80426739 TCACACAAGT
Statistics
Matches: 176, Mismatches: 23, Indels: 29
0.77 0.10 0.13
Matches are distributed among these distances:
44 10 0.06
45 17 0.10
46 75 0.43
47 28 0.16
48 22 0.12
49 24 0.14
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTAGCATACATCTCGTAGTCGATG
Found at i:80431451 original size:47 final size:47
Alignment explanation
Indices: 80431400--80431575 Score: 237
Period size: 47 Copynumber: 3.7 Consensus size: 47
80431390 TTAGGATTCT
* * *
80431400 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
80431447 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
80431494 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
80431541 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
80431576 TCCCGAAGGG
Statistics
Matches: 115, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
46 1 0.01
47 114 0.99
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:80431750 original size:37 final size:37
Alignment explanation
Indices: 80431694--80431772 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
80431684 CCGAGCTCTA
* * *
80431694 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
80431731 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
80431768 AAGAC
1 AAGAC
80431773 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:80436233 original size:20 final size:20
Alignment explanation
Indices: 80436206--80436257 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
80436196 TGGGCTGAGG
80436206 ACACGGGCGTGTCCTAAGAC
1 ACACGGGCGTGTCCTAAGAC
* *
80436226 ATACGGGCATGTCCTAAGAC
1 ACACGGGCGTGTCCTAAGAC
*
80436246 ACACGAGCGTGT
1 ACACGGGCGTGT
80436258 GTGACCACAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.27, C:0.27, G:0.29, T:0.17
Consensus pattern (20 bp):
ACACGGGCGTGTCCTAAGAC
Found at i:80438466 original size:46 final size:46
Alignment explanation
Indices: 80438323--80438466 Score: 143
Period size: 46 Copynumber: 3.1 Consensus size: 46
80438313 CCCGCCCATA
*
80438323 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--TACATC-CT
* * * * *
80438372 --CGAACTCGGACTCAACTCAACGAGTTTGGA--CATTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCC-T
* *
80438415 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
80438462 AGTGA
1 AGTGA
80438467 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 15
0.73 0.12 0.14
Matches are distributed among these distances:
42 1 0.01
43 6 0.08
45 2 0.03
46 33 0.43
47 28 0.37
48 6 0.08
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
Found at i:80443794 original size:46 final size:46
Alignment explanation
Indices: 80443727--80443947 Score: 257
Period size: 46 Copynumber: 4.8 Consensus size: 46
80443717 TGTAACCCGC
*
80443727 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
80443773 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * * *
80443819 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGTTCGCAT
* *** * * * * * *
80443865 ACATCTCTCGAACTCGGTCTCAACTCAACGAGTTCTGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
80443912 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
80443948 ATGCCCAAAC
Statistics
Matches: 147, Mismatches: 23, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
45 1 0.01
46 112 0.76
47 32 0.22
48 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:80443917 original size:93 final size:93
Alignment explanation
Indices: 80443727--80443952 Score: 287
Period size: 93 Copynumber: 2.4 Consensus size: 93
80443717 TGTAACCCGC
* * * *
80443727 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGTTCGTATCCATAAGTGAACTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTATACATAACTGAACTCGGA
* *
80443790 CTCAACTCAACGAGCTCGGGCGTTCGCAT
65 CTCAACTCAACGAGCTCGGACATTCGCAT
* ** *
80443819 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-TACATCTCTCGAACTCGGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTATACATAACT-GAACTCGGA
* * *
80443883 CTCAACTCAACGAGTTCTGACATTTGCAT
65 CTCAACTCAACGAGCTCGGACATTCGCAT
*
80443912 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCC
80443953 CAAACATCCT
Statistics
Matches: 116, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
92 40 0.34
93 74 0.64
94 2 0.02
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTATACATAACTGAACTCGGAC
TCAACTCAACGAGCTCGGACATTCGCAT
Found at i:80447983 original size:45 final size:44
Alignment explanation
Indices: 80447923--80448092 Score: 147
Period size: 45 Copynumber: 3.9 Consensus size: 44
80447913 ATAGGATCCG
* *
80447923 ATATGTGTTTTTGTGTAAGACCACGTCTAGGACGTTGGCATCGAT
1 ATATGTGGTTATGTGTAAGACCACGTCTAGGACGTTGGCATCG-T
* * * *
80447968 ATATGTGGTTATGTGTAAGACCATGTCTGGGACATCGGCATCGT
1 ATATGTGGTTATGTGTAAGACCACGTCTAGGACGTTGGCATCGT
* * *
80448012 AT-T-TGATT-CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCG-
1 ATATGTGGTTATGTGTAAGACCAC-GTCTAGGAC-GTTGGCATCGT
* * *
80448052 ATATG-AGATATCATGTAAGACCACGTCTAGGACGTTGGCAT
1 ATATGTGGTTAT-GTGTAAGACCACGTCTAGGACGTTGGCAT
80448093 TGTTCGATAT
Statistics
Matches: 100, Mismatches: 17, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
40 2 0.02
41 28 0.28
42 5 0.05
43 24 0.24
44 4 0.04
45 37 0.37
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (44 bp):
ATATGTGGTTATGTGTAAGACCACGTCTAGGACGTTGGCATCGT
Found at i:80453319 original size:79 final size:81
Alignment explanation
Indices: 80453216--80453400 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
80453206 GCTACTTGTT
* * *
80453216 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
80453279 GGATTTAGTAAC-TAGCA
64 GGATATAGTAACTTAGCA
* **
80453296 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
80453360 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
80453376 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80453401 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 35 0.38
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:80453400 original size:40 final size:40
Alignment explanation
Indices: 80453216--80453400 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
80453206 GCTACTTGTT
* * *
80453216 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
80453256 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* *
80453296 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
* * *
80453335 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
80453376 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80453401 CATCATTCAA
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 77 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:80456598 original size:7 final size:7
Alignment explanation
Indices: 80456580--80456640 Score: 63
Period size: 7 Copynumber: 8.7 Consensus size: 7
80456570 ATTTAGTTTA
*
80456580 TAGGGGT
1 TAGGGTT
*
80456587 TAAGGTT
1 TAGGGTT
*
80456594 TAAGGTT
1 TAGGGTT
80456601 TAGGGTAT
1 TAGGGT-T
80456609 T-GGGTT
1 TAGGGTT
80456615 TAGGGTT
1 TAGGGTT
80456622 TAGGGTAT
1 TAGGGT-T
80456630 TA-GGTT
1 TAGGGTT
80456636 TAGGG
1 TAGGG
80456641 CTTAATTATA
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
6 5 0.11
7 37 0.79
8 5 0.11
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (7 bp):
TAGGGTT
Found at i:80456638 original size:21 final size:21
Alignment explanation
Indices: 80456589--80456640 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
80456579 ATAGGGGTTA
*
80456589 AGGTTTAAGGTTTAGGGTATT
1 AGGTTTAGGGTTTAGGGTATT
*
80456610 GGGTTTAGGGTTTAGGGTATT
1 AGGTTTAGGGTTTAGGGTATT
80456631 AGGTTTAGGG
1 AGGTTTAGGG
80456641 CTTAATTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.19, C:0.00, G:0.40, T:0.40
Consensus pattern (21 bp):
AGGTTTAGGGTTTAGGGTATT
Found at i:80457054 original size:124 final size:122
Alignment explanation
Indices: 80456821--80457130 Score: 430
Period size: 123 Copynumber: 2.5 Consensus size: 122
80456811 GGTAGTGGAC
* * * * * *
80456821 TTAGCAACGCTTATTTA-AAAACACTGC-AAAAA-ATGATAAATTGAATGAAAACGACATCGTTT
1 TTAGCAGCGCTTA-TTAGAAAACGCCGCTAAAAATATGAGAAATTGAATGGAAACGGCATCGTTT
* * *
80456883 TAGTTGGTGGGTAGTGTACTTAGTGGCGCTAGGCAATAAACTCCGCAATAGATCAGAA
65 TAGTTGGAGGGTAGTGGACTTAGTGGCGCCAGGCAATAAACTCCGCAATAGATCAGAA
* *
80456941 TTAGCAGTGCTTATTAGAAAACGCCGCTAAAAAATATGAGAAATTGAATGGAAACGGCGTCGTTT
1 TTAGCAGCGCTTATTAGAAAACGCCGCT-AAAAATATGAGAAATTGAATGGAAACGGCATCGTTT
* *
80457006 TAGTTGGCAGGGTAGTGGATTTAGTGGCGCCAGGTAATAAACGT-CGCAATAGATCAGAA
65 TAGTTGG-AGGGTAGTGGACTTAGTGGCGCCAGGCAATAAAC-TCCGCAATAGATCAGAA
*
80457065 TTAGCGGCGCTTATTAGAAAACGCCGCTAAAAATATGAGAAATTGAATGGAAACGGCATCGTTTT
1 TTAGCAGCGCTTATTAGAAAACGCCGCTAAAAATATGAGAAATTGAATGGAAACGGCATCGTTTT
80457130 A
66 A
80457131 TGTGGCTCGG
Statistics
Matches: 168, Mismatches: 16, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
119 3 0.02
120 19 0.11
122 5 0.03
123 70 0.42
124 70 0.42
125 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.26
Consensus pattern (122 bp):
TTAGCAGCGCTTATTAGAAAACGCCGCTAAAAATATGAGAAATTGAATGGAAACGGCATCGTTTT
AGTTGGAGGGTAGTGGACTTAGTGGCGCCAGGCAATAAACTCCGCAATAGATCAGAA
Found at i:80457185 original size:123 final size:124
Alignment explanation
Indices: 80456848--80457211 Score: 353
Period size: 123 Copynumber: 3.0 Consensus size: 124
80456838 AAAACACTGC
* * * ** * * **
80456848 AAAAA-ATGATAAATTGAATGAAAACGACATCGTTTTAGTTGG-TGGGTAGTGTACTTAGTGGCG
1 AAAAATATGAGAAATTGAATGGAAACGGCATCGTTTTAGTTGGCACGGTAGTGGAATTAGCAGCG
* * * * * *
80456911 CTAGGCAATAAACTCCGCAATAGATCAGAATTAGCAGTGCTTATTAGAAAACGCCGCTA
66 CCAGGTAAGAAACGCCGCAATAGATCAGAATTAGCGGCGCTTATTAGAAAACGCCGCTA
* * * **
80456970 AAAAATATGAGAAATTGAATGGAAACGGCGTCGTTTTAGTTGGCAGGGTAGTGGATTTAGTGGCG
1 AAAAATATGAGAAATTGAATGGAAACGGCATCGTTTTAGTTGGCACGGTAGTGGAATTAGCAGCG
* *
80457035 CCAGGTAATAAACGTCGCAATAGATCAGAATTAGCGGCGCTTATTAGAAAACGCCGCT-
66 CCAGGTAAGAAACGCCGCAATAGATCAGAATTAGCGGCGCTTATTAGAAAACGCCGCTA
* *
80457093 AAAAATATGAGAAATTGAATGGAAACGGCATCGTTTTA-TGTGGCTCGGT-TTAGGAATTAGCAG
1 AAAAATATGAGAAATTGAATGGAAACGGCATCGTTTTAGT-TGGCACGGTAGT-GGAATTAGCAG
* * ** * * * * **
80457156 CGCTATGTTGGAAATGCCGCAAAAAATCAGCATTATTGGCGCTTATTCA-AAAACGC
64 CGCCAGGTAAGAAACGCCGCAATAGATCAGAATTAGCGGCGCTTATT-AGAAAACGC
80457212 TGCAAATGTC
Statistics
Matches: 205, Mismatches: 32, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
122 7 0.03
123 127 0.62
124 71 0.35
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (124 bp):
AAAAATATGAGAAATTGAATGGAAACGGCATCGTTTTAGTTGGCACGGTAGTGGAATTAGCAGCG
CCAGGTAAGAAACGCCGCAATAGATCAGAATTAGCGGCGCTTATTAGAAAACGCCGCTA
Found at i:80458484 original size:5 final size:5
Alignment explanation
Indices: 80458474--80458515 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
80458464 ATTTTGTCCT
80458474 TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC TA
1 TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC TA
80458516 GACTGCATCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAC
Found at i:80458834 original size:16 final size:17
Alignment explanation
Indices: 80458813--80458861 Score: 59
Period size: 15 Copynumber: 3.1 Consensus size: 17
80458803 GCTAGCCCTC
80458813 TGCTGCT-TCTCCAGTT
1 TGCTGCTATCTCCAGTT
80458829 TGCTGCTATCT--AGTT
1 TGCTGCTATCTCCAGTT
* *
80458844 TTCTGTTATCTCCAGTT
1 TGCTGCTATCTCCAGTT
80458861 T
1 T
80458862 TGGTATGTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
15 13 0.46
16 7 0.25
17 8 0.29
ACGTcount: A:0.10, C:0.24, G:0.16, T:0.49
Consensus pattern (17 bp):
TGCTGCTATCTCCAGTT
Found at i:80459679 original size:28 final size:27
Alignment explanation
Indices: 80459623--80459679 Score: 62
Period size: 28 Copynumber: 2.1 Consensus size: 27
80459613 TTTGATTATG
* *
80459623 TTATTTTATTTTTAATATAAATTACTA
1 TTATTTTATTTTTAATACAAAGTACTA
*
80459650 TTATTCTTATTTTTCATACAAACGTA-TA
1 TTATT-TTATTTTTAATACAAA-GTACTA
80459678 TT
1 TT
80459680 GGATAATAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
27 5 0.20
28 18 0.72
29 2 0.08
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.56
Consensus pattern (27 bp):
TTATTTTATTTTTAATACAAAGTACTA
Found at i:80460098 original size:105 final size:105
Alignment explanation
Indices: 80459906--80460268 Score: 584
Period size: 105 Copynumber: 3.4 Consensus size: 105
80459896 TTTTTAAATA
*
80459906 TTTTATTTTATTTTTAAATTACCTAATTGAATTAAATTGTATTTAAAGTTTTATTTTGAATAATT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTT--A-AA--
*
80459971 TATTTTATTTTATTTTATTTTAATCACAAAAAATATTTTGTCTAC
61 TATTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
*
80460016 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTTTTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* *
80460081 TATTTTATTTTATTTTAATCACGAAAAATACTTTGTCTGC
66 TATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
*
80460121 TTTTATTTTATTTTAAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
** *
80460186 TATTTTATTTTAAATTAATCACGAAAAATATTTTGTTTAC
66 TATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
*
80460226 TTTTATTTTATTGTTAAATTACCTAATTAAATT-AATTGTATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTT
80460269 TTAAATATTG
Statistics
Matches: 239, Mismatches: 14, Indels: 6
0.92 0.05 0.02
Matches are distributed among these distances:
104 10 0.04
105 171 0.72
107 2 0.01
108 1 0.00
110 55 0.23
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (105 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
TATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
Found at i:80460552 original size:9 final size:9
Alignment explanation
Indices: 80460546--80460664 Score: 91
Period size: 9 Copynumber: 13.0 Consensus size: 9
80460536 ATATCATATC
80460546 TTACATAAT
1 TTACATAAT
80460555 TTACATAAT
1 TTACATAAT
*
80460564 TTACATAAC
1 TTACATAAT
80460573 TTACA-AA-
1 TTACATAAT
*
80460580 ATACATAAAAAT
1 TTACAT---AAT
*
80460592 ATATCAT-AT
1 TTA-CATAAT
80460601 CTTACATAAT
1 -TTACATAAT
*
80460611 TTACATAAG
1 TTACATAAT
* * *
80460620 ATAAACAAT
1 TTACATAAT
80460629 TTACATAAT
1 TTACATAAT
*
80460638 TTACATAAC
1 TTACATAAT
*
80460647 TTACATAAC
1 TTACATAAT
80460656 TTACATAAT
1 TTACATAAT
80460665 ACATAAATAT
Statistics
Matches: 89, Mismatches: 13, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
7 4 0.04
8 2 0.02
9 71 0.80
10 4 0.04
11 2 0.02
12 3 0.03
13 3 0.03
ACGTcount: A:0.49, C:0.14, G:0.01, T:0.36
Consensus pattern (9 bp):
TTACATAAT
Found at i:80460633 original size:56 final size:56
Alignment explanation
Indices: 80460526--80460633 Score: 162
Period size: 56 Copynumber: 1.9 Consensus size: 56
80460516 AATCCTATCA
* ** * *
80460526 ACATAAATATATATCATATCTTACATAATTTACATAATTTACATAACTTACAAAAT
1 ACATAAAAATATATCATATCTTACATAATTTACATAAGATAAACAACTTACAAAAT
*
80460582 ACATAAAAATATATCATATCTTACATAATTTACATAAGATAAACAATTTACA
1 ACATAAAAATATATCATATCTTACATAATTTACATAAGATAAACAACTTACA
80460634 TAATTTACAT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 46 1.00
ACGTcount: A:0.50, C:0.14, G:0.01, T:0.35
Consensus pattern (56 bp):
ACATAAAAATATATCATATCTTACATAATTTACATAAGATAAACAACTTACAAAAT
Found at i:80475881 original size:26 final size:26
Alignment explanation
Indices: 80475845--80475951 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
80475835 ATGAAATTCC
80475845 ATCAT-GAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
80475870 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
80475896 ATCATGGAA-ATTTACCTGAACCTATT
1 ATCATGGAACATTTACCT-AACCCATT
*
80475922 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
80475948 ATCA
1 ATCA
80475952 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
25 13 0.17
26 57 0.73
27 8 0.10
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:80480773 original size:27 final size:26
Alignment explanation
Indices: 80480736--80480851 Score: 142
Period size: 27 Copynumber: 4.3 Consensus size: 26
80480726 AGCATGGCTG
* *
80480736 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
80480762 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
80480790 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
80480817 CCATATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
80480844 CCAGAACA
1 CCAGAACA
80480852 CTTCCTCCAT
Statistics
Matches: 79, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 5 0.06
27 57 0.72
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:80480795 original size:54 final size:54
Alignment explanation
Indices: 80480736--80480851 Score: 162
Period size: 54 Copynumber: 2.1 Consensus size: 54
80480726 AGCATGGCTG
*
80480736 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * * *
80480790 CCAGAACAGATATATGTGGCAGAGCCACCATATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
80480844 CCAGAACA
1 CCAGAACA
80480852 CTTCCTCCAT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 38 0.69
55 17 0.31
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:80482504 original size:26 final size:26
Alignment explanation
Indices: 80482468--80482577 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
80482458 CATGAAATTC
80482468 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
80482494 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
80482520 TTATCATGGAACATTTACCTGACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
80482546 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
80482572 TTATCA
1 TTATCA
80482578 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:80486023 original size:40 final size:40
Alignment explanation
Indices: 80485968--80486200 Score: 371
Period size: 40 Copynumber: 5.8 Consensus size: 40
80485958 TTATTTGATG
*
80485968 TGGAATGGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
* *
80486008 TGGAATCGTATCCGGGTTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
80486048 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
*
80486088 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
*
80486128 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
* * *
80486168 TGGAA-TGACATCCGGG-TTAAAAACCTGCAGGCT
1 TGGAATTG-TATCCGGGCTTAAAGACCCGCAGGCT
80486201 GTGATAGATA
Statistics
Matches: 181, Mismatches: 11, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
39 17 0.09
40 164 0.91
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
Found at i:80492792 original size:13 final size:13
Alignment explanation
Indices: 80492774--80492798 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80492764 GCCGTATGGT
80492774 TCACACGGCCGTG
1 TCACACGGCCGTG
80492787 TCACACGGCCGT
1 TCACACGGCCGT
80492799 ATTCTATGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.28, T:0.16
Consensus pattern (13 bp):
TCACACGGCCGTG
Found at i:80495832 original size:13 final size:13
Alignment explanation
Indices: 80495805--80495837 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
80495795 TGCCAGAAGC
80495805 AATTAAAAAGAAA
1 AATTAAAAAGAAA
80495818 AATTAGAAAAGAAA
1 AATTA-AAAAGAAA
80495832 AATTAA
1 AATTAA
80495838 GCTAAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (13 bp):
AATTAAAAAGAAA
Found at i:80497259 original size:27 final size:27
Alignment explanation
Indices: 80497221--80497288 Score: 127
Period size: 27 Copynumber: 2.5 Consensus size: 27
80497211 TGGTTTATCA
80497221 GGTATTTTGGTCATTTTACCCTATGGG
1 GGTATTTTGGTCATTTTACCCTATGGG
*
80497248 GGTATTTCGGTCATTTTACCCTATGGG
1 GGTATTTTGGTCATTTTACCCTATGGG
80497275 GGTATTTTGGTCAT
1 GGTATTTTGGTCAT
80497289 CACTTTAGCC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.15, C:0.15, G:0.26, T:0.44
Consensus pattern (27 bp):
GGTATTTTGGTCATTTTACCCTATGGG
Found at i:80505149 original size:10 final size:10
Alignment explanation
Indices: 80505133--80505171 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
80505123 CGAAAATAAC
80505133 TAAAATTAAT
1 TAAAATTAAT
*
80505143 CAAAATTAATT
1 TAAAATTAA-T
80505154 ATAAAATTAAT
1 -TAAAATTAAT
80505165 TAAAATT
1 TAAAATT
80505172 CAACATGTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 15 0.60
11 2 0.08
12 8 0.32
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (10 bp):
TAAAATTAAT
Found at i:80506482 original size:15 final size:15
Alignment explanation
Indices: 80506462--80506493 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
80506452 GACGATTTTA
*
80506462 TTTATTTTTTATATT
1 TTTATTTTTAATATT
80506477 TTTATTTTTAATATT
1 TTTATTTTTAATATT
80506492 TT
1 TT
80506494 GATCAATTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTATTTTTAATATT
Found at i:80508147 original size:14 final size:14
Alignment explanation
Indices: 80508115--80508146 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
80508105 CTTTTTTTAC
80508115 TAAAATAATAAATA
1 TAAAATAATAAATA
80508129 TAAAATAA-AAATA
1 TAAAATAATAAATA
80508142 TAAAA
1 TAAAA
80508147 AGCAAAACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (14 bp):
TAAAATAATAAATA
Found at i:80511330 original size:8 final size:8
Alignment explanation
Indices: 80511317--80511343 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
80511307 GAAATTTATA
80511317 TAAATTTT
1 TAAATTTT
80511325 TAAATTTT
1 TAAATTTT
80511333 TAAATTTT
1 TAAATTTT
80511341 TAA
1 TAA
80511344 GTGATGATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
TAAATTTT
Found at i:80515507 original size:19 final size:21
Alignment explanation
Indices: 80515469--80515512 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
80515459 AAATTTAATA
80515469 AAATAATATTTGAATCGAGTC
1 AAATAATATTTGAATCGAGTC
* *
80515490 AAATAA-ATTT-ATTCGAGTT
1 AAATAATATTTGAATCGAGTC
80515509 AAAT
1 AAAT
80515513 TAAAAAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 11 0.52
20 4 0.19
21 6 0.29
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.36
Consensus pattern (21 bp):
AAATAATATTTGAATCGAGTC
Found at i:80517153 original size:10 final size:10
Alignment explanation
Indices: 80517138--80517183 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
80517128 CACTAAATCT
80517138 ATTTTAATAA
1 ATTTTAATAA
80517148 ATTTTAATAA
1 ATTTTAATAA
* *
80517158 TTTCTTATTAA
1 ATT-TTAATAA
*
80517169 AATTTAATAA
1 ATTTTAATAA
80517179 ATTTT
1 ATTTT
80517184 TCTATAATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
10 22 0.76
11 7 0.24
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.54
Consensus pattern (10 bp):
ATTTTAATAA
Found at i:80518650 original size:19 final size:19
Alignment explanation
Indices: 80518627--80518677 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
80518617 AAAAGTTCCA
* *
80518627 AAAAATTCAAAATAATTTTT
1 AAAAGTTCAAAAT-ATTTAT
80518647 AAAAGTTC-AAATATTTAT
1 AAAAGTTCAAAATATTTAT
*
80518665 AAAATTTCAAAAT
1 AAAAGTTCAAAAT
80518678 TTATATTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 12 0.44
19 8 0.30
20 7 0.26
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (19 bp):
AAAAGTTCAAAATATTTAT
Found at i:80518667 original size:18 final size:18
Alignment explanation
Indices: 80518636--80518682 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
80518626 AAAAAATTCA
*
80518636 AAATAATTTTTAAAAGTTC
1 AAAT-ATTTATAAAAGTTC
*
80518655 AAATATTTATAAAATTTC
1 AAATATTTATAAAAGTTC
80518673 AAA-ATTTATA
1 AAATATTTATA
80518683 TTTTTTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 7 0.27
18 15 0.58
19 4 0.15
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
AAATATTTATAAAAGTTC
Found at i:80522375 original size:17 final size:17
Alignment explanation
Indices: 80522353--80522395 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
80522343 ATTTTATTTA
**
80522353 AAATGTCAATTTCCATC
1 AAATGTCAATTAACATC
*
80522370 AAATGTCCATTAACATC
1 AAATGTCAATTAACATC
80522387 AAAT-TCAAT
1 AAATGTCAAT
80522396 ACAATCATAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.42, C:0.21, G:0.05, T:0.33
Consensus pattern (17 bp):
AAATGTCAATTAACATC
Found at i:80527198 original size:19 final size:20
Alignment explanation
Indices: 80527166--80527205 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
80527156 ATATAATAAC
80527166 AAAACAAATAAGAAAAAGAA
1 AAAACAAATAAGAAAAAGAA
* *
80527186 AAAAGAAAT-AGAAATAGAA
1 AAAACAAATAAGAAAAAGAA
80527205 A
1 A
80527206 GCCAAAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.78, C:0.03, G:0.12, T:0.07
Consensus pattern (20 bp):
AAAACAAATAAGAAAAAGAA
Found at i:80528014 original size:2 final size:2
Alignment explanation
Indices: 80528009--80528035 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
80527999 GATATATATA
80528009 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
80528036 AAATGTGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:80529228 original size:19 final size:21
Alignment explanation
Indices: 80529204--80529246 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
80529194 GCACGTAGGA
80529204 TGATTGT-TTTGA-CATGTTT
1 TGATTGTATTTGATCATGTTT
*
80529223 TGATTGTATTTGATCGTGTTT
1 TGATTGTATTTGATCATGTTT
80529244 TGA
1 TGA
80529247 ACTGGTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.33
20 5 0.24
21 9 0.43
ACGTcount: A:0.16, C:0.05, G:0.23, T:0.56
Consensus pattern (21 bp):
TGATTGTATTTGATCATGTTT
Found at i:80534000 original size:20 final size:20
Alignment explanation
Indices: 80533963--80533999 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
80533953 GACTAAATTG
*
80533963 AAAACTTAGGGAAATTTTAC
1 AAAACTTAGGAAAATTTTAC
80533983 AAAACTTA-GAAAATTTT
1 AAAACTTAGGAAAATTTT
80534000 TGCAATAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.49, C:0.08, G:0.11, T:0.32
Consensus pattern (20 bp):
AAAACTTAGGAAAATTTTAC
Found at i:80541446 original size:27 final size:27
Alignment explanation
Indices: 80541416--80541593 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
80541406 ATATTGAGCC
* *
80541416 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
80541443 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
80541470 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** * *
80541498 CGCACACTTAGTGCCGCATGATCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
80541525 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
** *
80541552 CGCACACTTAGTGAAACATAGTCAAAC-
1 CGCACACTTAGTGCTACATAATC-AACT
80541579 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80541594 GTACAATTTA
Statistics
Matches: 125, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 101 0.81
28 24 0.19
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:80541555 original size:82 final size:81
Alignment explanation
Indices: 80541436--80541592 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
80541426 GTGCTATATA
* **
80541436 ATCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGC
1 ATCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGAAACATAGTCAAAC-CGC
80541501 ACACTTAGTGCCGCATG
65 ACACTTAGTGCCGCATG
* * **
80541518 ATCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGAAACATAGTCAAACCGC
1 ATCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGAAACATAGTCAAACCGC
80541582 ACACTTAGTGC
65 ACACTTAGTGC
80541593 TGTACAATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.78
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (81 bp):
ATCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGAAACATAGTCAAACCGCA
CACTTAGTGCCGCATG
Found at i:80549468 original size:27 final size:27
Alignment explanation
Indices: 80549438--80549615 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
80549428 ATATTGAGCC
* *
80549438 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
80549465 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
80549492 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** * *
80549520 CGCACACTTAGTGCCGCATGATCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
80549547 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
80549574 CGCACACTTAGTGCAACATAGTCAAAC-
1 CGCACACTTAGTGCTACATAATC-AACT
80549601 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80549616 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:80549577 original size:82 final size:81
Alignment explanation
Indices: 80549458--80549614 Score: 235
Period size: 82 Copynumber: 1.9 Consensus size: 81
80549448 GTGCTATATA
* *
80549458 ATCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGC
1 ATCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAAC-CGC
80549523 ACACTTAGTGCCGCATG
65 ACACTTAGTGCCGCATG
* * **
80549540 ATCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAACCGC
1 ATCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAACCGC
80549604 ACACTTAGTGC
65 ACACTTAGTGC
80549615 TGTACAATTT
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 53 0.78
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
ATCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAACCGCA
CACTTAGTGCCGCATG
Found at i:80564936 original size:40 final size:40
Alignment explanation
Indices: 80564881--80565015 Score: 243
Period size: 40 Copynumber: 3.4 Consensus size: 40
80564871 TATGTGCATA
*
80564881 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCTCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
80564921 GCATTCGTGCGGGTTATTATAATCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
80564961 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
80565001 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
80565016 GTTACATCCG
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 91 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:80565039 original size:80 final size:80
Alignment explanation
Indices: 80564881--80565039 Score: 221
Period size: 80 Copynumber: 2.0 Consensus size: 80
80564871 TATGTGCATA
*
80564881 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCTCGAAGGCATTCGTGCGGGTTATTATAATCG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAATCG
* ** *
80564946 GGTTAAGTCCCGAAG
66 AGCCAAATCCCGAAG
* * *
80564961 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTA-CATCC
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAAT-C
*
80565025 GAGCCAAATTCCGAA
65 GAGCCAAATCCCGAA
80565040 AGTATTTATG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
79 2 0.03
80 67 0.97
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (80 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAATCG
AGCCAAATCCCGAAG
Found at i:80569787 original size:40 final size:40
Alignment explanation
Indices: 80569596--80569780 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
80569586 TTGAATGATG
* * * *
80569596 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * * *
80569636 TCTGGACTAAGAT-CCAAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
80569676 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
80569715 TCCAGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
80569756 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80569781 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
39 33 0.28
40 76 0.64
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80569802 original size:79 final size:79
Alignment explanation
Indices: 80569652--80569813 Score: 186
Period size: 79 Copynumber: 2.1 Consensus size: 79
80569642 CTAAGATCCA
* * **
80569652 AAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATC
1 AAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATC
*
80569717 CAGGTTAAGTCCCG
66 CAGGTTAAATCCCG
* * *
80569731 AAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTAT
1 AAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTAA
* *
80569794 AT-CTGGTTAAATTCCG
63 ATCCAGGTTAAATCCCG
80569810 AAGG
1 AAGG
80569814 TACGTGATTT
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.64
80 23 0.33
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
AAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATC
CAGGTTAAATCCCG
Found at i:80571389 original size:126 final size:126
Alignment explanation
Indices: 80571124--80571441 Score: 514
Period size: 126 Copynumber: 2.5 Consensus size: 126
80571114 GGTGTTACAC
*
80571124 TGCATCCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTT-
1 TGCATCCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTC
*
80571188 AGGAATTACTATAGAAAAAAAGCGTCCACGTGAGAGCTTTTTTCTGTAATTTTGCTGACAG
66 AGGAACTACTATAGAAAAAAAGCGTCCACGTGAGAGCTTTTTTCTGTAATTTTGCTGACAG
* *
80571249 TGCATCCTGCTTGAAGCATTTTTGACACTATTTTTTTAGAAACGTCTTCTCAAAATTATTTTTTC
1 TGCATCCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTC
* * *
80571314 AGGAACTACTGTAGAAAAAGAGTGTCCACGTG-GAAGCTTTTTTCTGTAATTTTGCTGACAG
66 AGGAACTACTATAGAAAAAAAGCGTCCACGTGAG-AGCTTTTTTCTGTAATTTTGCTGACAG
** * *
80571375 TGCATCCTGCTTGAAGTGTTTTTGACACTAATTGTTCAAAAACGTCTTCTCAAAATTATTTTTTC
1 TGCATCCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTC
80571440 AG
66 AG
80571442 AGTACAAAAT
Statistics
Matches: 178, Mismatches: 13, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
125 62 0.35
126 116 0.65
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (126 bp):
TGCATCCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTC
AGGAACTACTATAGAAAAAAAGCGTCCACGTGAGAGCTTTTTTCTGTAATTTTGCTGACAG
Found at i:80571601 original size:240 final size:237
Alignment explanation
Indices: 80571302--80571782 Score: 829
Period size: 240 Copynumber: 2.0 Consensus size: 237
80571292 GTCTTCTCAA
* *
80571302 AATTATTTTTTCAGGAACTACTGTAGAAAAAGAGTGTCCACGTGGAAGCTTTTTTCTGTAATTTT
1 AATTATTTTTTCAGGAACTACTGTAGAAAAAGAGCGCCCACGTGGAAGCTTTTTTCTGTAATTTT
* *
80571367 GCTGACAGTGCATCCTGCTTGAAGTGTTTTTGACACTAATTGTTCAAAAACGTCTTCTCAAAATT
66 GCTGACAGTGCATCCTGCTTGAAGGGTTTTTGACACTAATTGTTCAAAAACATCTTCTCAAAATT
80571432 ATTTTTTCAGAGTACAAAATAGACAATTTTGTTAAAAAAATAAACACAATGTTATTTTT-AAAAA
131 ATTTTTTCAGAGTACAAAATAGACAATTTTGTT---AAAA-AAACACAATGTTATTTTTAAAAAA
80571496 ATCCTAAACCCTAATTTAATTAAACTTAACCTAAACCTTACACCAT
192 ATCCTAAACCCTAATTTAATTAAACTTAACCTAAACCTTACACCAT
* * *
80571542 AATTATTTTTTCAGGAACTACTGTCGAAAAAGAGCGCCCACGTGGAAGTTTTTTTCTGTATTTTT
1 AATTATTTTTTCAGGAACTACTGTAGAAAAAGAGCGCCCACGTGGAAGCTTTTTTCTGTAATTTT
* * *
80571607 GCTGACAGTGCATCCTGCTTGAAGGGTTTTTGACACTATTTGTTCAGAAATATCTTCTCAAAATT
66 GCTGACAGTGCATCCTGCTTGAAGGGTTTTTGACACTAATTGTTCAAAAACATCTTCTCAAAATT
80571672 ATTTTTTCAGAGTACAAAATAGACAATTTTGTTAAAAAAACACAATGTTATTTTTAAAAAAATCC
131 ATTTTTTCAGAGTACAAAATAGACAATTTTGTTAAAAAAACACAATGTTATTTTTAAAAAAATCC
80571737 TAAACCCTAATTTAATTAAACTTAACCTAAACCTTACACCAT
196 TAAACCCTAATTTAATTAAACTTAACCTAAACCTTACACCAT
80571779 AATT
1 AATT
80571783 TAATTTATTT
Statistics
Matches: 230, Mismatches: 10, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
236 18 0.08
237 59 0.26
240 153 0.67
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (237 bp):
AATTATTTTTTCAGGAACTACTGTAGAAAAAGAGCGCCCACGTGGAAGCTTTTTTCTGTAATTTT
GCTGACAGTGCATCCTGCTTGAAGGGTTTTTGACACTAATTGTTCAAAAACATCTTCTCAAAATT
ATTTTTTCAGAGTACAAAATAGACAATTTTGTTAAAAAAACACAATGTTATTTTTAAAAAAATCC
TAAACCCTAATTTAATTAAACTTAACCTAAACCTTACACCAT
Found at i:80571884 original size:22 final size:22
Alignment explanation
Indices: 80571856--80571897 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
80571846 CCCTAAATCC
80571856 TAATTTATTTAAAACCCTAATT
1 TAATTTATTTAAAACCCTAATT
80571878 TAATTTATTTAAAACCCTAA
1 TAATTTATTTAAAACCCTAA
80571898 AAACCCTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (22 bp):
TAATTTATTTAAAACCCTAATT
Found at i:80571951 original size:34 final size:35
Alignment explanation
Indices: 80571878--80571952 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 35
80571868 AACCCTAATT
* * *
80571878 TAATTTATTTAAAACCCTAAAAACCCTAATTTAAT
1 TAATTTATTTAAAACACTAAAAACCCTAAATTAAA
**
80571913 TAATTTATTTAAAA-ACTTTAAACCCTAAATTAAA
1 TAATTTATTTAAAACACTAAAAACCCTAAATTAAA
80571947 TAATTT
1 TAATTT
80571953 TAAAAAAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
34 21 0.60
35 14 0.40
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (35 bp):
TAATTTATTTAAAACACTAAAAACCCTAAATTAAA
Found at i:80572061 original size:35 final size:34
Alignment explanation
Indices: 80572003--80572081 Score: 86
Period size: 35 Copynumber: 2.3 Consensus size: 34
80571993 ACTAAAATTC
*
80572003 TAAACCATAACTTTTTTAACAAAAACCTAAACAT
1 TAAACCCTAACTTTTTTAACAAAAACCTAAACAT
** * * *
80572037 TAAACCCTAACTTATTTTGGCAAAATCCTAACCCT
1 TAAACCCTAACTT-TTTTAACAAAAACCTAAACAT
*
80572072 AAAACCCTAA
1 TAAACCCTAA
80572082 AAAACCCTAG
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
34 12 0.32
35 25 0.68
ACGTcount: A:0.44, C:0.25, G:0.03, T:0.28
Consensus pattern (34 bp):
TAAACCCTAACTTTTTTAACAAAAACCTAAACAT
Found at i:80577913 original size:30 final size:30
Alignment explanation
Indices: 80577858--80577919 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
80577848 CACTAAGCAA
80577858 GTTTCATATACATGTATCATCCATTTC-AT
1 GTTTCATATACATGTATCATCCATTTCTAT
80577887 GTTTCAATATATCATGTAAT-AT-CATTTCTAT
1 GTTTC-ATATA-CATGT-ATCATCCATTTCTAT
80577918 GT
1 GT
80577920 ATTTCATGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
29 5 0.17
30 11 0.38
31 11 0.38
32 2 0.07
ACGTcount: A:0.29, C:0.16, G:0.08, T:0.47
Consensus pattern (30 bp):
GTTTCATATACATGTATCATCCATTTCTAT
Found at i:80578108 original size:25 final size:25
Alignment explanation
Indices: 80578080--80578150 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
80578070 TGCTTATACA
*
80578080 AGCTATGAATTGGTAAGCTCTTAAG
1 AGCTATGAATCGGTAAGCTCTTAAG
* * *
80578105 AGCTGTGAATCGGTAAGCTCATACG
1 AGCTATGAATCGGTAAGCTCTTAAG
* *
80578130 AGCTAAGAATCAGTAAGCTCT
1 AGCTATGAATCGGTAAGCTCT
80578151 CATGAGCTGC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (25 bp):
AGCTATGAATCGGTAAGCTCTTAAG
Found at i:80578182 original size:25 final size:26
Alignment explanation
Indices: 80578092--80578184 Score: 79
Period size: 25 Copynumber: 3.7 Consensus size: 26
80578082 CTATGAATTG
* * * *
80578092 GTAAGCTCTTAAGAGCTG-TGAATCG
1 GTAAGCTCATACGAGCTGAAGAATCA
80578117 GTAAGCTCATACGAGCT-AAGAATCA
1 GTAAGCTCATACGAGCTGAAGAATCA
* *
80578142 GTAAGCTC-TCATGAGCTGCA-AATCTA
1 GTAAGCTCAT-ACGAGCTGAAGAATC-A
80578168 G-AAGCTCATACGAGCTG
1 GTAAGCTCATACGAGCTG
80578185 TGGTGTGCCT
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
24 1 0.02
25 51 0.91
26 4 0.07
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
GTAAGCTCATACGAGCTGAAGAATCA
Found at i:80581806 original size:42 final size:42
Alignment explanation
Indices: 80581753--80581877 Score: 137
Period size: 42 Copynumber: 3.0 Consensus size: 42
80581743 AAGGCTGCAT
* * *
80581753 AGAAGCACATAAGTGCTAAACAGAAACCCATAAGGGTTGAAC
1 AGAAGCTCATAAGAGCTGAACAGAAACCCATAAGGGTTGAAC
* * * *
80581795 GGAAGCTCATAAGAGCTGAA-TGAAAACCCATAAAGGTTAAAC
1 AGAAGCTCATAAGAGCTGAACAG-AAACCCATAAGGGTTGAAC
* *
80581837 AGAAGCTCA-ATAGAGCTGAACGGAAACCCATTAGGGTTGAA
1 AGAAGCTCATA-AGAGCTGAACAGAAACCCATAAGGGTTGAA
80581878 TTAAAACTCA
Statistics
Matches: 68, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
41 2 0.03
42 65 0.96
43 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.16
Consensus pattern (42 bp):
AGAAGCTCATAAGAGCTGAACAGAAACCCATAAGGGTTGAAC
Found at i:80581814 original size:21 final size:21
Alignment explanation
Indices: 80581753--80581814 Score: 52
Period size: 21 Copynumber: 3.0 Consensus size: 21
80581743 AAGGCTGCAT
* *
80581753 AGAAGCACATAAGTGCTAAAC
1 AGAAGCACATAAGAGCTGAAC
* * * *
80581774 AGAAACCCATAAGGGTTGAAC
1 AGAAGCACATAAGAGCTGAAC
* *
80581795 GGAAGCTCATAAGAGCTGAA
1 AGAAGCACATAAGAGCTGAA
80581815 TGAAAACCCA
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.15
Consensus pattern (21 bp):
AGAAGCACATAAGAGCTGAAC
Found at i:80581859 original size:63 final size:63
Alignment explanation
Indices: 80581790--80581925 Score: 150
Period size: 63 Copynumber: 2.2 Consensus size: 63
80581780 CCATAAGGGT
* *
80581790 TGAACGGAAGCTCATAAGAGCTGAATGAAAACCCATAA-AGGTTAAACAGAAGCTCAAT-AGAGC
1 TGAACGGAAACCCATAAGAGCTGAATGAAAACCCATAAGA-GTTAAACAGAAGCTC-ATGAGAGC
* * * * * * *
80581853 TGAACGGAAACCCATTAGGGTTGAATTAAAACTCATATGAGTTAAACAGAAGCTCGTGAGAGC
1 TGAACGGAAACCCATAAGAGCTGAATGAAAACCCATAAGAGTTAAACAGAAGCTCATGAGAGC
*
80581916 TAAACGGAAA
1 TGAACGGAAA
80581926 GTAAACACGA
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
62 1 0.02
63 59 0.97
64 1 0.02
ACGTcount: A:0.43, C:0.16, G:0.23, T:0.18
Consensus pattern (63 bp):
TGAACGGAAACCCATAAGAGCTGAATGAAAACCCATAAGAGTTAAACAGAAGCTCATGAGAGC
Found at i:80582012 original size:24 final size:24
Alignment explanation
Indices: 80581980--80582046 Score: 107
Period size: 24 Copynumber: 2.8 Consensus size: 24
80581970 GGATAATTTG
*
80581980 CCGTCAATTCATCCTTTTCATATA
1 CCGTCAATTCATCCTTTGCATATA
* *
80582004 CCGTCAATTTATCCTTTGCATTTA
1 CCGTCAATTCATCCTTTGCATATA
80582028 CCGTCAATTCATCCTTTGC
1 CCGTCAATTCATCCTTTGC
80582047 CATAGAACGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.30, G:0.07, T:0.42
Consensus pattern (24 bp):
CCGTCAATTCATCCTTTGCATATA
Found at i:80591487 original size:24 final size:25
Alignment explanation
Indices: 80591460--80591506 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
80591450 GCGTTACGAT
80591460 TGTA-AACCAAGTGATTTCCCTTCA
1 TGTAGAACCAAGTGATTTCCCTTCA
* *
80591484 TGTAGCATCAAGTGATTTCCCTT
1 TGTAGAACCAAGTGATTTCCCTT
80591507 GTCTTTGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (25 bp):
TGTAGAACCAAGTGATTTCCCTTCA
Found at i:80592376 original size:18 final size:18
Alignment explanation
Indices: 80592349--80592389 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
80592339 GTATATGGGG
*
80592349 CCGTGTGGTCACACACGC
1 CCGTGCGGTCACACACGC
* *
80592367 CCGTGCGGTCACATACTC
1 CCGTGCGGTCACACACGC
80592385 CCGTG
1 CCGTG
80592390 TGGCTTGGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.15, C:0.39, G:0.27, T:0.20
Consensus pattern (18 bp):
CCGTGCGGTCACACACGC
Found at i:80602020 original size:20 final size:21
Alignment explanation
Indices: 80601995--80602042 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
80601985 TTGTGTGATT
*
80601995 AATTAGGTTTTAGTT-AGGTG
1 AATTAGGTTTGAGTTAAGGTG
*
80602015 AATTA-GTTTGAGTTAAGGTT
1 AATTAGGTTTGAGTTAAGGTG
80602035 AATTAGGT
1 AATTAGGT
80602043 GAGAGGACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 8 0.33
20 14 0.58
21 2 0.08
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (21 bp):
AATTAGGTTTGAGTTAAGGTG
Found at i:80602235 original size:5 final size:5
Alignment explanation
Indices: 80602227--80602283 Score: 114
Period size: 5 Copynumber: 11.4 Consensus size: 5
80602217 AAAATAATAT
80602227 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
80602277 TATTA TA
1 TATTA TA
80602284 ATAGTTTAAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 52 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:80614714 original size:18 final size:18
Alignment explanation
Indices: 80614672--80614714 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
80614662 GCCCATTCCG
* *
80614672 AAGTATATATATATACAT
1 AAGTATGTATATATACAC
80614690 ATA-TATGTATATATACAC
1 A-AGTATGTATATATACAC
80614708 AAGTATG
1 AAGTATG
80614715 CCCATTCGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (18 bp):
AAGTATGTATATATACAC
Found at i:80615221 original size:56 final size:56
Alignment explanation
Indices: 80615159--80615392 Score: 321
Period size: 56 Copynumber: 4.2 Consensus size: 56
80615149 GAGATTGGCG
* *
80615159 CTAAGTGTGCGGGTTTAAAT-TGTGCAGCACTAAGTGTGCGA-ATTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGAATATGT--AGCACTAAGTGTGCGAGATTGACTATGTAGCA
* *
80615215 CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGAATATGTAGCACTAAGTGTGCGAGATTGACTATGTAGCA
* * *
80615271 CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGAATATGTAGCACTAAGTGTGCGAGATTGACTATGTAGCA
* * * *
80615327 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGAATATGTAGCACTAAGTGTGCGAGATTGACTATGTAGCA
*
80615382 CTGAGTGTGCG
1 CTAAGTGTGCG
80615393 GACTTATTAT
Statistics
Matches: 166, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
55 39 0.23
56 124 0.75
57 3 0.02
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.32
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGAATATGTAGCACTAAGTGTGCGAGATTGACTATGTAGCA
Found at i:80615241 original size:28 final size:28
Alignment explanation
Indices: 80615184--80615392 Score: 332
Period size: 28 Copynumber: 7.5 Consensus size: 28
80615174 TAAATTGTGC
*
80615184 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
80615211 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
80615239 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
80615267 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
80615295 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
80615323 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
80615351 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
80615378 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80615393 GACTTATTAT
Statistics
Matches: 175, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
27 40 0.23
28 135 0.77
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:80622942 original size:18 final size:18
Alignment explanation
Indices: 80622900--80622942 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
80622890 GCCCATTCCG
* *
80622900 AAGTATATATATATACAT
1 AAGTATGTATATATACAC
80622918 ATA-TATGTATATATACAC
1 A-AGTATGTATATATACAC
80622936 AAGTATG
1 AAGTATG
80622943 CCCATTCGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (18 bp):
AAGTATGTATATATACAC
Found at i:80623470 original size:28 final size:28
Alignment explanation
Indices: 80623413--80623620 Score: 323
Period size: 28 Copynumber: 7.5 Consensus size: 28
80623403 TAAATTGTGC
* *
80623413 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
80623440 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
80623468 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
80623496 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
80623524 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
80623552 AGCACTAAGTGTGCGAG-TTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* * *
80623579 AGCACTAGGTGTGCGAG-CTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
80623606 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80623621 GACTTAATAT
Statistics
Matches: 169, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 62 0.37
28 107 0.63
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:80627429 original size:45 final size:45
Alignment explanation
Indices: 80627306--80627536 Score: 155
Period size: 44 Copynumber: 5.2 Consensus size: 45
80627296 GCTATAAATT
* * *
80627306 ATAGCAAATCTCATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAG
1 ATAGCAAATCTCATCTCCCTGAAGTTGCAGTTGAGCAGATTAAAG
** * * * * *
80627351 CCA-CCAGTCTTATCTCCCT-AAGGTTGCAATTGAGCAGACTAAAG
1 ATAGCAAATCTCATCTCCCTGAA-GTTGCAGTTGAGCAGATTAAAG
*
80627395 ATAGCAAATCTCATCTCCCTGAAGTAGCAGTTGAGCAGATTAAAG
1 ATAGCAAATCTCATCTCCCTGAAGTTGCAGTTGAGCAGATTAAAG
* * * * * * * * **
80627440 -TTGTAGATCTTATCTCCTTGAAGTTGTAGTAGAGTAGATCGAAG
1 ATAGCAAATCTCATCTCCCTGAAGTTGCAGTTGAGCAGATTAAAG
* * * * * * * *
80627484 ATAACGAATCTTATTTCCCTGATGTTGTAGTGGAACAGATTAAAG
1 ATAGCAAATCTCATCTCCCTGAAGTTGCAGTTGAGCAGATTAAAG
*
80627529 CTA-CAAAT
1 ATAGCAAAT
80627537 TATAGCAAAT
Statistics
Matches: 138, Mismatches: 44, Indels: 9
0.72 0.23 0.05
Matches are distributed among these distances:
43 2 0.01
44 68 0.49
45 66 0.48
46 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (45 bp):
ATAGCAAATCTCATCTCCCTGAAGTTGCAGTTGAGCAGATTAAAG
Found at i:80627622 original size:97 final size:99
Alignment explanation
Indices: 80627449--80627628 Score: 238
Period size: 97 Copynumber: 1.8 Consensus size: 99
80627439 GTTGTAGATC
* * * * * *
80627449 TTATCTCCTTGAAGTTGTAGTAGAGTAGATCGAAGATAACGAATCTTATTTCCCTGATGTTGTAG
1 TTATCTCCCTAAAGTTGCAGTAGAGTAGATCGAAGAGAACGAATCTTATCTCCCTGAAGTTGTAG
*
80627514 TGGAACAGATTAAAGCTACAAATTATAGCAAATA
66 TAGAACAGATTAAAGCTACAAATTATAGCAAATA
* * * *
80627548 TTATCTCCCTAAAGTTGCAGTGGAGTAGATC-AA-AGCACTAATCTTATCTCTCTGAAGTTGTAG
1 TTATCTCCCTAAAGTTGCAGTAGAGTAGATCGAAGAGAACGAATCTTATCTCCCTGAAGTTGTAG
*
80627611 TAGAGCAGATTAAAGCTA
66 TAGAACAGATTAAAGCTA
80627629 TAATCTATAC
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
97 40 0.58
98 2 0.03
99 27 0.39
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (99 bp):
TTATCTCCCTAAAGTTGCAGTAGAGTAGATCGAAGAGAACGAATCTTATCTCCCTGAAGTTGTAG
TAGAACAGATTAAAGCTACAAATTATAGCAAATA
Found at i:80627654 original size:42 final size:43
Alignment explanation
Indices: 80627548--80627655 Score: 123
Period size: 43 Copynumber: 2.5 Consensus size: 43
80627538 ATAGCAAATA
* * * *
80627548 TTATCTCCCTAAAGTTGCAGTGGAGTAGATCAAAGCACTAATC
1 TTATCTCTCTAAAGTTGTAGTAGAGCAGATCAAAGCACTAATC
* *
80627591 TTATCTCTCTGAAGTTGTAGTAGAGCAGATTAAAGCTA-TAATC
1 TTATCTCTCTAAAGTTGTAGTAGAGCAGATCAAAGC-ACTAATC
80627634 -TATACT-TCTAAAGTTGTAGTAG
1 TTAT-CTCTCTAAAGTTGTAGTAG
80627656 GTTGGACCAA
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
42 18 0.32
43 37 0.66
44 1 0.02
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (43 bp):
TTATCTCTCTAAAGTTGTAGTAGAGCAGATCAAAGCACTAATC
Found at i:80627763 original size:44 final size:44
Alignment explanation
Indices: 80627679--80627786 Score: 128
Period size: 44 Copynumber: 2.5 Consensus size: 44
80627669 TAACATGGCG
* * * * *
80627679 AATCTTATCTCTCTGAAGCTATAGTGGAGCAGATTGAAGCCACA
1 AATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCCACA
* *
80627723 AATCTTATCTCCCTGAAGTTACAGTAGAGTAGTTTAAAGCCACA
1 AATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCCACA
*
80627767 AATCCTATAC-CCCTGAAGTT
1 AATCTTAT-CTCCCTGAAGTT
80627787 GTAGTGGGAT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 54 0.98
45 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCCACA
Found at i:80628003 original size:44 final size:44
Alignment explanation
Indices: 80627816--80628060 Score: 129
Period size: 44 Copynumber: 5.5 Consensus size: 44
80627806 TCATACAAAT
* ** * * *
80627816 TACAAGTCTTATCTCCCTAAAGTTGCAGTGGAATAGGCTGAAA-A
1 TACAAGTCTTATCTCCCTAAAGTTGCAGTAGAGCA-GATCAAAGC
* * * * * * * *
80627860 TAGTAAATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATTAAAGT
1 TA-CAAGTCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCAAAGC
* * * * * * * * * ** *
80627905 TATAAGCCTAATCTCCTTGAAGTTACAGTGGGGCAGGTTGAAGT
1 TACAAGTCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCAAAGC
* *
80627949 TAC-AGATCTTATATCCCTAAAGTTGCAGT-GAGTAGATCAAAGC
1 TACAAG-TCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCAAAGC
* * * *
80627992 TAGCAAGTCTTATCTTCTTAAAGTTGTAGTAGAGCAGATTAAAGC
1 TA-CAAGTCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCAAAGC
80628037 TACAAGTCCTT-TCTCCCTAAAGTT
1 TACAAGT-CTTATCTCCCTAAAGTT
80628061 ATAATGGAAT
Statistics
Matches: 151, Mismatches: 43, Indels: 14
0.73 0.21 0.07
Matches are distributed among these distances:
43 12 0.08
44 92 0.61
45 47 0.31
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (44 bp):
TACAAGTCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCAAAGC
Found at i:80628060 original size:132 final size:133
Alignment explanation
Indices: 80627822--80628061 Score: 299
Period size: 132 Copynumber: 1.8 Consensus size: 133
80627812 AAATTACAAG
* * * * *
80627822 TCTTATCTCCCTAAAGTTGCAGTGGAATAGGCTGAAAATAGTAAATCTTATCTCTCTGAAGTTGT
1 TCTTATATCCCTAAAGTTGCAGTGGAATAGGATCAAAATAGCAAATCTTATCTCTCTAAAGTTGT
* * * * *
80627887 AGTAGAGTAGATTAAAGTTATAAGCCTAATCTCCTTGAAGTTACAGTGGGGCAGGTTGAAGTTAC
66 AGTAGAGCAGATTAAAGCTACAAGCCTAATCTCCCTAAAGTTACAGTGGGGCAGGTTGAAGTTAC
80627952 AGA
131 AGA
* * *
80627955 TCTTATATCCCTAAAGTTGCAGT-GAGTA-GATCAAAGCTAGCAAGTCTTATCT-TCTTAAAGTT
1 TCTTATATCCCTAAAGTTGCAGTGGAATAGGATCAAA-ATAGCAAATCTTATCTCTC-TAAAGTT
*
80628017 GTAGTAGAGCAGATTAAAGCTACAAGTCCT-TTCTCCCTAAAGTTA
64 GTAGTAGAGCAGATTAAAGCTACAAG-CCTAATCTCCCTAAAGTTA
80628062 TAATGGAATG
Statistics
Matches: 90, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
131 7 0.08
132 58 0.64
133 25 0.28
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (133 bp):
TCTTATATCCCTAAAGTTGCAGTGGAATAGGATCAAAATAGCAAATCTTATCTCTCTAAAGTTGT
AGTAGAGCAGATTAAAGCTACAAGCCTAATCTCCCTAAAGTTACAGTGGGGCAGGTTGAAGTTAC
AGA
Found at i:80628590 original size:3 final size:3
Alignment explanation
Indices: 80628582--80628609 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
80628572 CGCAAAACAA
80628582 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
80628610 TATTGTATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:80629641 original size:24 final size:24
Alignment explanation
Indices: 80629608--80629684 Score: 109
Period size: 24 Copynumber: 3.2 Consensus size: 24
80629598 AAGGCTGTTA
* * *
80629608 GGAGAAGATTTGGGAACTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
80629632 GGAGAGGATTTAAGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
80629656 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
80629680 GGAGA
1 GGAGA
80629685 ACGGTGTTGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.35, C:0.04, G:0.40, T:0.21
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:80631155 original size:27 final size:26
Alignment explanation
Indices: 80631115--80631226 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
80631105 AGGAAACATC
*
80631115 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
80631142 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
80631169 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
80631197 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
80631223 CTGG
1 CTGG
80631227 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 7 0.09
27 52 0.68
28 17 0.22
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:80631219 original size:54 final size:54
Alignment explanation
Indices: 80631115--80631226 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
80631105 AGGAAACATC
*
80631115 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
80631169 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
80631223 CTGG
1 CTGG
80631227 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:80632788 original size:27 final size:27
Alignment explanation
Indices: 80632747--80632800 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
80632737 TGTCATGTGA
* *
80632747 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
80632774 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
80632801 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:80633167 original size:49 final size:51
Alignment explanation
Indices: 80633049--80633184 Score: 195
Period size: 49 Copynumber: 2.7 Consensus size: 51
80633039 TATTGTGAGC
* *
80633049 GTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGT
1 GTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACATGT
* * * * *
80633100 GTAGTACTAAGTGTAGGCTACTATGTGTACTAGATAA-TT-GGTCGCATGT
1 GTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACATGT
80633149 GTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
80633185 GCCTTGTCTA
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
49 40 0.53
50 2 0.03
51 33 0.44
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (51 bp):
GTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACATGT
Found at i:80645172 original size:9 final size:9
Alignment explanation
Indices: 80645155--80645210 Score: 55
Period size: 9 Copynumber: 6.4 Consensus size: 9
80645145 TCTATTTCAA
*
80645155 AAAAAAAAG
1 AAAAGAAAG
80645164 AAAAGAAAG
1 AAAAGAAAG
80645173 AAAAGAAA-
1 AAAAGAAAG
*
80645181 AAGAGAAA-
1 AAAAGAAAG
*
80645189 AAAATAAAG
1 AAAAGAAAG
80645198 AGAAA-AAAG
1 A-AAAGAAAG
80645207 AAAA
1 AAAA
80645211 AATGGAGAGG
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
8 16 0.39
9 22 0.54
10 3 0.07
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:80645181 original size:20 final size:20
Alignment explanation
Indices: 80645153--80645212 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
80645143 CTTCTATTTC
* *
80645153 AAAAAAAAAAGAAAAGAAAG
1 AAAAGAAAAAGAAAAAAAAG
*
80645173 AAAAGAAAAAGAGAAAAAAAT
1 AAAAGAAAAAGA-AAAAAAAG
80645194 AAAGAGAAAAAAGAAAAAA
1 AAA-AG-AAAAAGAAAAAA
80645213 TGGAGAGGCC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 11 0.32
21 9 0.26
22 7 0.21
23 7 0.21
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (20 bp):
AAAAGAAAAAGAAAAAAAAG
Found at i:80645213 original size:20 final size:21
Alignment explanation
Indices: 80645153--80645213 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 21
80645143 CTTCTATTTC
80645153 AAAA-AAAAAAGAAAAGAA-AG
1 AAAAGAAAAAAGAAAA-AATAG
80645173 AAAAGAAAAAGAGAAAAAAATA-
1 AAAAGAAAAA-AG-AAAAAATAG
*
80645195 AAGAGAAAAAAGAAAAAAT
1 AAAAGAAAAAAGAAAAAAT
80645214 GGAGAGGCCA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
20 11 0.31
21 7 0.19
22 13 0.36
23 5 0.14
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (21 bp):
AAAAGAAAAAAGAAAAAATAG
Found at i:80646135 original size:44 final size:44
Alignment explanation
Indices: 80646082--80646263 Score: 181
Period size: 44 Copynumber: 4.1 Consensus size: 44
80646072 CAAAGAAATA
* *
80646082 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGC
1 AGATCTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * **
80646126 AGATCTGGCATTCCTATGCTTACAGCGAAGCAGATTGCAGATTTC
1 AGATCTGGCATCCCTATGTTTATAGGGAA-CAGATCGAAGATAGC
* * *
80646171 AG--CATGGCATCCCTGTGTTTATTGGGAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTATGTTTATAGGGAACAGA-TCGAAGATAGC
* *
80646214 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATCTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAGC
80646258 AGATCT
1 AGATCT
80646264 AACCTTCAGA
Statistics
Matches: 109, Mismatches: 23, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
42 1 0.01
43 13 0.12
44 82 0.75
45 13 0.12
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (44 bp):
AGATCTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAGC
Found at i:80646461 original size:119 final size:119
Alignment explanation
Indices: 80646253--80646846 Score: 1017
Period size: 119 Copynumber: 5.0 Consensus size: 119
80646243 CAGATCGAAG
80646253 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
80646318 TTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAAG
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
*
80646372 ATAGTAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
80646437 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
80646491 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
80646556 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
80646610 ATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
80646675 TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * * * * **
80646729 ATAGTAGATCTAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGACATCCTTGTAC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * * *
80646794 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
80646847 CAGACTCAAG
Statistics
Matches: 452, Mismatches: 23, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 452 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:80646870 original size:83 final size:83
Alignment explanation
Indices: 80646770--80647198 Score: 759
Period size: 83 Copynumber: 5.1 Consensus size: 83
80646760 GAAGCAGATC
* *
80646770 CAAGATGGTTTGACATCCTTGTACTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
80646835 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
80646853 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
80646918 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
*
80646936 TAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
*
80647001 AATATTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
*
80647019 CAAGATGGTTTGGCATACTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
80647084 AATGTTCTCAAACATGACT
66 AATGTTCTCAAACA-GACT
* * *
80647103 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
80647168 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
*
80647187 CAAGATGATTTG
1 CAAGATGGTTTG
80647199 ATGTCCTTAC
Statistics
Matches: 332, Mismatches: 12, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
83 239 0.72
84 29 0.09
85 64 0.19
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:80652680 original size:11 final size:11
Alignment explanation
Indices: 80652644--80652685 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
80652634 TTTAAAATTT
*
80652644 AAAATAATTTA
1 AAAATAATATA
80652655 AATAA-AATCATA
1 AA-AATAAT-ATA
80652667 AAAATAATATA
1 AAAATAATATA
80652678 AAAATAAT
1 AAAATAAT
80652686 TTGAAGACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (11 bp):
AAAATAATATA
Found at i:80654110 original size:12 final size:12
Alignment explanation
Indices: 80654093--80654123 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
80654083 GATATAAATA
80654093 TAAAATTCCTAT
1 TAAAATTCCTAT
80654105 TAAAATT-CTAT
1 TAAAATTCCTAT
80654116 TAAAATTC
1 TAAAATTC
80654124 ATTATCAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (12 bp):
TAAAATTCCTAT
Found at i:80654117 original size:11 final size:11
Alignment explanation
Indices: 80654093--80654127 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
80654083 GATATAAATA
80654093 TAAAATTCCTAT
1 TAAAATT-CTAT
80654105 TAAAATTCTAT
1 TAAAATTCTAT
80654116 TAAAATTC-AT
1 TAAAATTCTAT
80654126 TA
1 TA
80654128 TCAATTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 4 0.17
11 12 0.52
12 7 0.30
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (11 bp):
TAAAATTCTAT
Found at i:80658604 original size:152 final size:151
Alignment explanation
Indices: 80658329--80658631 Score: 520
Period size: 152 Copynumber: 2.0 Consensus size: 151
80658319 GAATCATCCC
80658329 CATTCTGCAGAATATAAGATAAATAAAACTATACAACACAGAATGCTATCAAAGGTATCATGTCT
1 CATTCTGCAGAATATAAGATAAATAAAACTATACAACACAGAATGCTATCAAAGGTATCATGTCT
** *
80658394 GCTACCATATAAAATGACAGTTGATGAAGGGAGCAAATTTTTTCTTTGAAGAACGTAAAATTCAA
66 GCTACCATATAAAATGACAGTTGATGAAGAAAGCAAACTTTTTCTTTGAAGAACGTAAAATTCAA
80658459 GCCTAAAATCAATGAAATCAA
131 GCCTAAAATCAATGAAATCAA
*
80658480 CATTCTGCAGAATATAAGATAAAATAAAAACTATACATCACAGAATGCTATC-AAGGTATCAATG
1 CATTCTGCAGAATATAAGAT-AAAT-AAAACTATACAACACAGAATGCTATCAAAGGTATC-ATG
80658544 TCTGCTACCATAT-AAATGACAGTTGATGAAGAAAGCAAACTTTTTCTTTGAAGAACGTAAAATT
63 TCTGCTACCATATAAAATGACAGTTGATGAAGAAAGCAAACTTTTTCTTTGAAGAACGTAAAATT
*
80658608 CAAGCCTAAAATCAGTGAAATCAA
128 CAAGCCTAAAATCAATGAAATCAA
80658632 TCTATCTTAC
Statistics
Matches: 144, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
151 20 0.14
152 83 0.58
153 41 0.28
ACGTcount: A:0.44, C:0.16, G:0.14, T:0.26
Consensus pattern (151 bp):
CATTCTGCAGAATATAAGATAAATAAAACTATACAACACAGAATGCTATCAAAGGTATCATGTCT
GCTACCATATAAAATGACAGTTGATGAAGAAAGCAAACTTTTTCTTTGAAGAACGTAAAATTCAA
GCCTAAAATCAATGAAATCAA
Found at i:80660743 original size:47 final size:47
Alignment explanation
Indices: 80660684--80660967 Score: 419
Period size: 47 Copynumber: 6.1 Consensus size: 47
80660674 GAAATGATAG
*
80660684 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
80660731 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
80660778 TAAGGCCTAACAGCCGATGTGATGAATGTG-AAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
80660824 TAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
80660870 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * * *
80660917 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
80660964 TAAG
1 TAAG
80660968 TCCCGAAGGG
Statistics
Matches: 220, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
45 22 0.10
46 42 0.19
47 156 0.71
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:80660940 original size:139 final size:141
Alignment explanation
Indices: 80660684--80660967 Score: 419
Period size: 139 Copynumber: 2.0 Consensus size: 141
80660674 GAAATGATAG
*
80660684 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
* * * * *
80660749 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAACAGCCGATGTGATGAATGTG-AAGTG
66 GTGATGAATGTGAAAGTGCATATATGTGACAAGGCCGAACAGCCAACGTGATGAATGTGAAAGTG
* *
80660813 TATATATGTGA
131 CATAAATGTGA
* *
80660824 TAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
* *** *
80660888 GTGATGAATGTGAAAGTGCATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
66 GTGATGAATGTGAAAGTGCATATATGTGACAAGGCCGAACAGCCAACGTGATGAATGTGAAAGTG
80660953 CATAAATGTGA
131 CATAAATGTGA
80660964 TAAG
1 TAAG
80660968 TCCCGAAGGG
Statistics
Matches: 128, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
139 105 0.82
140 23 0.18
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.27
Consensus pattern (141 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGTGCATATATGTGACAAGGCCGAACAGCCAACGTGATGAATGTGAAAGTG
CATAAATGTGA
Found at i:80661139 original size:37 final size:37
Alignment explanation
Indices: 80661084--80661161 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
80661074 TCGAGCTCTA
* *
80661084 AAGA-CCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
80661120 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
80661157 AAGAC
1 AAGAC
80661162 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 4 0.11
37 32 0.86
38 1 0.03
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:80663178 original size:8 final size:8
Alignment explanation
Indices: 80663167--80663237 Score: 63
Period size: 8 Copynumber: 8.5 Consensus size: 8
80663157 ATATTAAATA
80663167 TTAAATTT
1 TTAAATTT
*
80663175 TT-AAGTT
1 TTAAATTT
80663182 TTAAATTT
1 TTAAATTT
*
80663190 TTTAATTT
1 TTAAATTT
*
80663198 TTAATTTT
1 TTAAATTT
*
80663206 TTAATTTTT
1 TTAA-ATTT
80663215 TTAAAGATTT
1 TT-AA-ATTT
80663225 TTATAATTT
1 TTA-AATTT
80663234 TTAA
1 TTAA
80663238 TTAACATATA
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
7 6 0.12
8 24 0.46
9 14 0.27
10 8 0.15
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (8 bp):
TTAAATTT
Found at i:80663178 original size:15 final size:15
Alignment explanation
Indices: 80663160--80663213 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 15
80663150 AACTAAAATA
*
80663160 TTAAATATTAAATTT
1 TTAAATTTTAAATTT
*
80663175 TTAAGTTTTAAATTT
1 TTAAATTTTAAATTT
* *
80663190 TTTAATTTTTAATTT
1 TTAAATTTTAAATTT
*
80663205 TTTAATTTT
1 TTAAATTTT
80663214 TTTAAAGATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (15 bp):
TTAAATTTTAAATTT
Found at i:80663194 original size:9 final size:9
Alignment explanation
Indices: 80663180--80663235 Score: 55
Period size: 9 Copynumber: 6.3 Consensus size: 9
80663170 AATTTTTAAG
80663180 TTTTAAATT
1 TTTTAAATT
80663189 TTTT-AA-T
1 TTTTAAATT
80663196 TTTT-AATT
1 TTTTAAATT
*
80663204 TTTTAATTT
1 TTTTAAATT
*
80663213 TTTTAAAGAT
1 TTTTAAA-TT
80663223 TTTTATAATT
1 TTTTA-AATT
80663233 TTT
1 TTT
80663236 AATTAACATA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
7 7 0.18
8 7 0.18
9 13 0.33
10 10 0.26
11 2 0.05
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.70
Consensus pattern (9 bp):
TTTTAAATT
Done.