Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 244 of 344
Found at i:81014726 original size:16 final size:16
Alignment explanation
Indices: 81014695--81014731 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
81014685 ATGTGAAGAA
81014695 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
81014711 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
81014727 TATTA
1 TATTA
81014732 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:81015295 original size:5 final size:5
Alignment explanation
Indices: 81015285--81015317 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
81015275 AATAATTAAG
81015285 TATAT TATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TAT
81015318 TATATATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:81015392 original size:31 final size:30
Alignment explanation
Indices: 81015357--81015417 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
81015347 GAATCAGAAT
*
81015357 GAAAGCAAACGAAAC-AGAGAAGAACAGGGGA
1 GAAAG-AAACGAAACAAGA-AAGAAAAGGGGA
* *
81015388 GAAAGAAAGGAAAGAAGAAAGAAAAGGGGA
1 GAAAGAAACGAAACAAGAAAGAAAAGGGGA
81015418 AATAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.59, C:0.07, G:0.34, T:0.00
Consensus pattern (30 bp):
GAAAGAAACGAAACAAGAAAGAAAAGGGGA
Found at i:81016993 original size:39 final size:39
Alignment explanation
Indices: 81016886--81017020 Score: 123
Period size: 39 Copynumber: 3.4 Consensus size: 39
81016876 GACCTCGAGT
* * *
81016886 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGCTAG-TC
** ** *
81016927 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
*
81016965 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAACTATTACTTCG-GCTAGTC
*
81017004 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
81017021 CCATATTGGT
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
38 19 0.25
39 36 0.47
40 4 0.05
41 15 0.20
42 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
Found at i:81024977 original size:372 final size:372
Alignment explanation
Indices: 81024286--81025037 Score: 1371
Period size: 372 Copynumber: 2.0 Consensus size: 372
81024276 TTAATTTTGA
81024286 TTAATT-TGACTATTTTCGACAGATTCGCGCAAAGGGCGAAAATTGGCTCGGCTGACACTGCTGA
1 TTAATTGTGACTATTTTCGACAGATTCGCGCAAAGGGCGAAAATTGGCTCGGCTGACACTGCTGA
* *
81024350 AAGCACAAAATCGAGAAGCAATTTGAAGTTTTGAGGCACATTAATTTCCAGCCTAAGACGATCCA
66 AAGCACAAAATCGAGAAGCAATTTGAAGTTTCGAGGCACATTAATTTCCAGCCTAAGACGACCCA
81024415 GAAATGTGTATTAATTCATAATTTAATTAATTTTAATTTATTCTCCATTTAATTTGGGTTAAATA
131 GAAATGTGTATTAATTCATAATTTAATTAATTTTAATTTATTCTCCATTTAATTTGGGTTAAATA
* * *
81024480 AATTATTTTTAATTAATTATGGAGAAAGGGTCTAATTGAACCGCGCCATTCGAACCATATTGAGT
196 AATTATTTTTAATTAATTATGGAGAAAGGGTCCAATTGAACCACACCATTCGAACCATATTGAGT
* *
81024545 GAACCGAACCAGCAACTAATTGGTCAGACCAGAACCGTCAGCATTTTAGATGATTAAATATGCTT
261 GAACCAAACCAACAACTAATTGGTCAGACCAGAACCGTCAGCATTTTAGATGATTAAATATGCTT
81024610 GCAAAAAGGCCCTTGAAGAACTATCAAAATGCATTCAAACCCCTCCT
326 GCAAAAAGGCCCTTGAAGAACTATCAAAATGCATTCAAACCCCTCCT
*
81024657 TTAATTGTGACTATTTTCGACAGATTCGCGCAAAGGGCGAAAATTGGCTTGGCTGACACTGCTGA
1 TTAATTGTGACTATTTTCGACAGATTCGCGCAAAGGGCGAAAATTGGCTCGGCTGACACTGCTGA
81024722 AAGCACAAAATCGAGAAGCAATTTGAAGTTTCGAGGCACATTAATTTCCAGCCTAAGACGACCCA
66 AAGCACAAAATCGAGAAGCAATTTGAAGTTTCGAGGCACATTAATTTCCAGCCTAAGACGACCCA
81024787 GAAATGTGTATTAATTCATAATTTAATTAATTTTAATTTATTCTCCATTTAATTTGGGTTAAATA
131 GAAATGTGTATTAATTCATAATTTAATTAATTTTAATTTATTCTCCATTTAATTTGGGTTAAATA
*
81024852 AATTATTTTTAATTAATTATGGAGAAAGGGTCCAATTGAACCACACCGTTCGAACCATATTGAGT
196 AATTATTTTTAATTAATTATGGAGAAAGGGTCCAATTGAACCACACCATTCGAACCATATTGAGT
* ** *
81024917 GAACCAAACCAACAACTAATTGGTCAGCCCAGAATTGTCAGCATTTTAGCTGATTAAATATGCTT
261 GAACCAAACCAACAACTAATTGGTCAGACCAGAACCGTCAGCATTTTAGATGATTAAATATGCTT
*
81024982 GCAAAAAGGCCCTTGAAGAACTATCAAAATGCATTCAAGCCCCTCCT
326 GCAAAAAGGCCCTTGAAGAACTATCAAAATGCATTCAAACCCCTCCT
81025029 TTAATTGTG
1 TTAATTGTG
81025038 GCTTTATGAA
Statistics
Matches: 366, Mismatches: 14, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
371 6 0.02
372 360 0.98
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (372 bp):
TTAATTGTGACTATTTTCGACAGATTCGCGCAAAGGGCGAAAATTGGCTCGGCTGACACTGCTGA
AAGCACAAAATCGAGAAGCAATTTGAAGTTTCGAGGCACATTAATTTCCAGCCTAAGACGACCCA
GAAATGTGTATTAATTCATAATTTAATTAATTTTAATTTATTCTCCATTTAATTTGGGTTAAATA
AATTATTTTTAATTAATTATGGAGAAAGGGTCCAATTGAACCACACCATTCGAACCATATTGAGT
GAACCAAACCAACAACTAATTGGTCAGACCAGAACCGTCAGCATTTTAGATGATTAAATATGCTT
GCAAAAAGGCCCTTGAAGAACTATCAAAATGCATTCAAACCCCTCCT
Found at i:81035846 original size:40 final size:40
Alignment explanation
Indices: 81035791--81035893 Score: 109
Period size: 40 Copynumber: 2.6 Consensus size: 40
81035781 AACAAATTGA
* *
81035791 CTATATTTGGCACTTAGTGTGCG-TTTCGAGATAGCTTCAG
1 CTATATATGGCACTTAGTGTGCGAATTCGA-ATAGCTTCAG
* * * * *
81035831 CTATATATAGCACTTAGTATGCGAATTGGAATAGTTTCGG
1 CTATATATGGCACTTAGTGTGCGAATTCGAATAGCTTCAG
* *
81035871 CTATATGTGGCACTAAGTGTGCG
1 CTATATATGGCACTTAGTGTGCG
81035894 GTACTGAGAC
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
40 47 0.92
41 4 0.08
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (40 bp):
CTATATATGGCACTTAGTGTGCGAATTCGAATAGCTTCAG
Found at i:81037601 original size:44 final size:44
Alignment explanation
Indices: 81037551--81038095 Score: 294
Period size: 44 Copynumber: 11.9 Consensus size: 44
81037541 CATCGTGGTG
* *
81037551 AATCTTATCTCCTTGAAGTTGCAGTGAAGCAGATTAAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGTTACA
** * * * *
81037595 AATCTTATCTCCCAAAAGTTGCAATGAAGCACATTGTAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGTTA-CA
* * * *
81037640 AAT-TTATCTCTCTGAAGTTGCAGT-AGAGTAGATTAAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGA-AGCAGATTGAAGTTACA
* * * *
81037683 TAA-CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCG
1 -AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGTTA-CA
* *
81037728 AATCTTATTTCCCTGAAGTTGTAGTGGAA-CAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGT-GAAGCAGATT---G----AAGTTACA
* * * * * *
81037779 AATCTTATCTCCCTGAAGATGCAGTTG-AGAAAATTGAAGATGCG
1 AATCTTATCTCCCTGAAGTTGCAG-TGAAGCAGATTGAAGTTACA
* * * *
81037823 CATCTTATTTCCCTAAAGTTGCAGTGGAA-CAGAGTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGT-GAAGCAGA-T-----T-GAAGTTACA
* * * * *
81037874 AATCTTATCTCCCTAAAGTTACAATGGAGCAGATTGAA-TATGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGT-TACA
* * * * ***
81037918 AATTTTATCTCCCTGAAATTGCAGTGAAGCAGGTTGAAGATGTG
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGTTACA
* * * **
81037962 AATCTTATTTCCTTGAAGTTACAGTGAAATAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATT---G----AAGTTACA
* * * **
81038013 AATCTTATCTCCTTGAAATTGCAGTGGAGCAGATTGAAGTTATT
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGTTACA
* * * *
81038057 AATCTTATCTCCCTAAAGTTGCGGTGGAGTAGATTGAAG
1 AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAG
81038096 CGACGAACCC
Statistics
Matches: 377, Mismatches: 88, Indels: 72
0.70 0.16 0.13
Matches are distributed among these distances:
43 5 0.01
44 229 0.61
45 36 0.10
46 2 0.01
47 1 0.00
48 3 0.01
50 5 0.01
51 90 0.24
52 6 0.02
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGTTACA
Found at i:81037910 original size:95 final size:96
Alignment explanation
Indices: 81037587--81037943 Score: 367
Period size: 95 Copynumber: 3.8 Consensus size: 96
81037577 AAGCAGATTA
* * * * *
81037587 AAGTTACAAATCTTATCTCCCAAAAGTTGCAATGAAGCACATTGTAGATAGCAAAT-TTATCTCT
1 AAGTTACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAGCAAATCTTATCTCC
* * **
81037651 CTGAAGTTGCAGTAGAGTAGATTAAAGCTAC
66 CTAAAGTTGCAGTGGAACAGATTAAAGCTAC
* * * * *
81037682 -A--T---AA-CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCC
1 AAGTTACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAGCAAATCTTATCTCC
* *
81037740 CTGAAGTTGTAGTGGAACAGATTAAAGCTAC
66 CTAAAGTTGCAGTGGAACAGATTAAAGCTAC
* * * * * * ** *
81037771 AAGTTACAAATCTTATCTCCCTGAAGATGCAGTTGAGAAAATTGAAGAT-GCGCATCTTATTTCC
1 AAGTTACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAGCAAATCTTATCTCC
*
81037835 CTAAAGTTGCAGTGGAACAGAGTAAAGCTAC
66 CTAAAGTTGCAGTGGAACAGATTAAAGCTAC
* * *
81037866 AAGTTACAAATCTTATCTCCCTAAAGTTACAATGGAGCAGATTGAATAT-GCAAATTTTATCTCC
1 AAGTTACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAGCAAATCTTATCTCC
81037930 CTGAAA-TTGCAGTG
66 CT-AAAGTTGCAGTG
81037944 AAGCAGGTTG
Statistics
Matches: 218, Mismatches: 35, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
88 37 0.17
89 35 0.16
90 1 0.00
92 2 0.01
94 1 0.00
95 106 0.49
96 36 0.17
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (96 bp):
AAGTTACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAGCAAATCTTATCTCC
CTAAAGTTGCAGTGGAACAGATTAAAGCTAC
Found at i:81038094 original size:139 final size:138
Alignment explanation
Indices: 81037777--81038095 Score: 374
Period size: 139 Copynumber: 2.3 Consensus size: 138
81037767 CTACAAGTTA
* * * * *
81037777 CAAATCTTATCTCCCTGAAGATGCAGTTGAGAAAATTGAAGATGCGCATCTTATTTCCCTAAAGT
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAGATGCGAATCTTATTTCCCTAAAGT
* *
81037842 TGCAGTGGAACAGAGTAAAGCTACAAGTTACAAATCTTATCTCCCTAAAGTTACAATGGAGCAGA
66 TACAGTGAAACAGAGTAAAGCTACAAGTTACAAATCTTATCTCCCTAAAGTTACAATGGAGCAGA
81037907 TTGAATAT
131 TTGAATAT
* * * * * * *
81037915 GCAAATTTTATCTCCCTGAAA-TTGCAGTGAAGCAGGTTGAAGATGTGAATCTTATTTCCTTGAA
1 -CAAATCTTATCTCCCT-AAAGTTGCAGTGGAGAAGATTGAAGATGCGAATCTTATTTCCCTAAA
* * * * *
81037979 GTTACAGTGAAATAGATTAAAGCTACAAGTTACAAATCTTATCTCCTTGAAA-TTGCAGTGGAGC
64 GTTACAGTGAAACAGAGTAAAGCTACAAGTTACAAATCTTATCTCCCT-AAAGTTACAATGGAGC
81038043 AGATTGAAGTTAT
128 AGATTGAA--TAT
* * *
81038056 -TAATCTTATCTCCCTAAAGTTGCGGTGGAGTAGATTGAAG
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAG
81038096 CGACGAACCC
Statistics
Matches: 150, Mismatches: 25, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
138 3 0.02
139 139 0.93
140 5 0.03
141 3 0.02
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31
Consensus pattern (138 bp):
CAAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAGATGCGAATCTTATTTCCCTAAAGT
TACAGTGAAACAGAGTAAAGCTACAAGTTACAAATCTTATCTCCCTAAAGTTACAATGGAGCAGA
TTGAATAT
Found at i:81043242 original size:43 final size:42
Alignment explanation
Indices: 81043195--81043312 Score: 116
Period size: 43 Copynumber: 2.7 Consensus size: 42
81043185 AGAAAAAGAC
81043195 CAAAAAAGGAAGCTACATGGAAGAAACCACA-AT-TGCATCCAAA
1 CAAAAAAGGAAGC-ACATGGAAGAAACCACATATATG--TCCAAA
* *
81043238 CAAAAAAGGAAGCA-ATGTGAAAGTAACCACATCTATGTCCAAA
1 CAAAAAAGGAAGCACATG-G-AAGAAACCACATATATGTCCAAA
* * *
81043281 CAAAAAAGGAAGCAACCTAGAAGCAACCACAT
1 CAAAAAAGGAAGC-ACATGGAAGAAACCACAT
81043313 TAGGACAAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
41 3 0.05
42 2 0.03
43 53 0.83
44 3 0.05
45 3 0.05
ACGTcount: A:0.51, C:0.21, G:0.16, T:0.12
Consensus pattern (42 bp):
CAAAAAAGGAAGCACATGGAAGAAACCACATATATGTCCAAA
Found at i:81050085 original size:6 final size:6
Alignment explanation
Indices: 81050074--81050099 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
81050064 AAAATAACAT
81050074 AAAATA AAAATA AAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AA
81050100 GAACACACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:81050971 original size:20 final size:21
Alignment explanation
Indices: 81050925--81050972 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
81050915 AATTATTTTA
*
81050925 AATTATAAATATTATAAATATT
1 AATTA-AAATATTATAAAGATT
*
81050947 -TTTAAAATATTA-AAAGATT
1 AATTAAAATATTATAAAGATT
81050966 AATTAAA
1 AATTAAA
81050973 TTTGACATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
19 6 0.27
20 13 0.59
21 3 0.14
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (21 bp):
AATTAAAATATTATAAAGATT
Found at i:81056179 original size:30 final size:30
Alignment explanation
Indices: 81056143--81056202 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
81056133 TATTTTATTA
* *
81056143 TTAATTTTGTTATTATTTTAAAGGTATTTG
1 TTAATTTTATTATTATTCTAAAGGTATTTG
*
81056173 TTAATTTTATTATTATTCTAGAGGTATTTG
1 TTAATTTTATTATTATTCTAAAGGTATTTG
81056203 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.58
Consensus pattern (30 bp):
TTAATTTTATTATTATTCTAAAGGTATTTG
Found at i:81059153 original size:12 final size:12
Alignment explanation
Indices: 81059136--81059171 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
81059126 AAGCATGTCA
81059136 TATCTGTATTTG
1 TATCTGTATTTG
81059148 TATCTGTATTCTG
1 TATCTGTATT-TG
81059161 TATCTGT-TTTG
1 TATCTGTATTTG
81059172 GGGAAGGACT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 2 0.09
12 12 0.52
13 9 0.39
ACGTcount: A:0.14, C:0.11, G:0.17, T:0.58
Consensus pattern (12 bp):
TATCTGTATTTG
Found at i:81065390 original size:18 final size:18
Alignment explanation
Indices: 81065355--81065388 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
81065345 CAAACCTGTC
*
81065355 ATTTTTCCTTTTCATTTG
1 ATTTTTCCTTCTCATTTG
81065373 ATTTTTCCTTCT-ATTT
1 ATTTTTCCTTCTCATTT
81065389 TGTTTCGATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.12, C:0.18, G:0.03, T:0.68
Consensus pattern (18 bp):
ATTTTTCCTTCTCATTTG
Found at i:81068280 original size:26 final size:26
Alignment explanation
Indices: 81068232--81068288 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
81068222 GATTTCATAA
** * *
81068232 GCCGAGGTCATTTTGGGCTATTTTGG
1 GCCGAGGTCATTTTGAACCATTTTAG
81068258 GCCGAGGTCATTTTGAACCATTTTAG
1 GCCGAGGTCATTTTGAACCATTTTAG
81068284 GCCGA
1 GCCGA
81068289 ACTGAGCCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.18, C:0.19, G:0.30, T:0.33
Consensus pattern (26 bp):
GCCGAGGTCATTTTGAACCATTTTAG
Found at i:81072848 original size:9 final size:9
Alignment explanation
Indices: 81072834--81072866 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
81072824 TTCTTATATT
81072834 TTTTTTTAC
1 TTTTTTTAC
81072843 TTTTTTTAC
1 TTTTTTTAC
81072852 -TTTTTTAC
1 TTTTTTTAC
81072860 TTTTTTT
1 TTTTTTT
81072867 CTTATATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTTTTTAC
Found at i:81072855 original size:7 final size:8
Alignment explanation
Indices: 81072835--81072865 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
81072825 TCTTATATTT
81072835 TTTTTTAC
1 TTTTTTAC
81072843 TTTTTTTAC
1 -TTTTTTAC
81072852 TTTTTTAC
1 TTTTTTAC
81072860 TTTTTT
1 TTTTTT
81072866 TCTTATATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 14 0.64
9 8 0.36
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTTTTAC
Found at i:81073015 original size:21 final size:21
Alignment explanation
Indices: 81072959--81073032 Score: 60
Period size: 21 Copynumber: 3.4 Consensus size: 21
81072949 ATATTATTAA
* * * *
81072959 TTTTAAAAAATTTGTAATATA
1 TTTTTAAAATTTTATAATATT
*
81072980 TATTTAAAATGTTTTATAATATT
1 TTTTTAAAA--TTTTATAATATT
*
81073003 TTTTTAAAATTTTA-ATTATT
1 TTTTTAAAATTTTATAATATT
81073023 ATTTTTAAAA
1 -TTTTTAAAA
81073033 ATATTTTTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
20 5 0.12
21 21 0.49
23 17 0.40
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (21 bp):
TTTTTAAAATTTTATAATATT
Found at i:81073033 original size:22 final size:23
Alignment explanation
Indices: 81072946--81073034 Score: 78
Period size: 23 Copynumber: 4.0 Consensus size: 23
81072936 GCTTATTTAA
* *
81072946 TTTATATTATTAATTTTAAAAAA
1 TTTATATTATTATTTTTAAAAAT
* * * *
81072969 TTTGTAATA-TATATTTAAAATGT
1 TTTATATTATTATTTTTAAAA-AT
*
81072992 TTTATAATATT-TTTTT-AAAAT
1 TTTATATTATTATTTTTAAAAAT
81073013 TTTA-ATTATTATTTTTAAAAAT
1 TTTATATTATTATTTTTAAAAAT
81073035 ATTTTTTAAC
Statistics
Matches: 52, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
20 5 0.10
21 10 0.19
22 17 0.33
23 19 0.37
24 1 0.02
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (23 bp):
TTTATATTATTATTTTTAAAAAT
Found at i:81073318 original size:18 final size:18
Alignment explanation
Indices: 81073295--81073341 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
81073285 CTGACTATTA
81073295 ATAAATTTAAATATAAAT
1 ATAAATTTAAATATAAAT
*
81073313 ATAAATTTTAA-A-AAAT
1 ATAAATTTAAATATAAAT
*
81073329 ATATA-TTAAATAT
1 ATAAATTTAAATAT
81073342 TATTTTATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
15 4 0.17
16 9 0.38
17 1 0.04
18 10 0.42
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAAATTTAAATATAAAT
Found at i:81073544 original size:26 final size:26
Alignment explanation
Indices: 81073512--81073579 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 26
81073502 AAATTTTAAA
*
81073512 TATAATTTTTAAATACATTTAA-AAAT
1 TATAATTTTTAAATA-ATATAAGAAAT
*
81073538 TATAATTTTTTAATAATATAAGAAAT
1 TATAATTTTTAAATAATATAAGAAAT
*
81073564 CATAATATTTTAAATA
1 TATAAT-TTTTAAATA
81073580 TTTTTTTAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
25 5 0.14
26 23 0.64
27 8 0.22
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (26 bp):
TATAATTTTTAAATAATATAAGAAAT
Found at i:81073726 original size:23 final size:22
Alignment explanation
Indices: 81073672--81073746 Score: 66
Period size: 23 Copynumber: 3.4 Consensus size: 22
81073662 TTATTATTAA
* *
81073672 TTTTAAATTTTTTTAATGTATAT
1 TTTTAAATTTTTATAATATAT-T
**
81073695 TTAAAAATTTTTATAATATATT
1 TTTTAAATTTTTATAATATATT
81073717 TTTTACAA-TTTTA-AATAT-TAT
1 TTTTA-AATTTTTATAATATAT-T
81073738 TTTTAAATT
1 TTTTAAATT
81073747 CTTTTTTTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
20 3 0.07
21 12 0.28
22 9 0.21
23 19 0.44
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (22 bp):
TTTTAAATTTTTATAATATATT
Found at i:81073742 original size:21 final size:21
Alignment explanation
Indices: 81073703--81073746 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
81073693 ATTTAAAAAT
81073703 TTTTATAATATATTTTTTACAA
1 TTTTATAATATATTTTTTA-AA
81073725 TTTTA-AATAT-TATTTTTAAA
1 TTTTATAATATAT-TTTTTAAA
81073745 TT
1 TT
81073747 CTTTTTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 5 0.24
21 11 0.52
22 5 0.24
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTATAATATATTTTTTAAA
Found at i:81073868 original size:18 final size:18
Alignment explanation
Indices: 81073845--81073892 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
81073835 GTGATGATTA
81073845 ATAAATTTAAATATAAAT
1 ATAAATTTAAATATAAAT
*
81073863 ATAAATTTTAA-A-AAAT
1 ATAAATTTAAATATAAAT
*
81073879 ATATA-TTAAATATA
1 ATAAATTTAAATATA
81073893 TTTTTTATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 4 0.16
16 9 0.36
17 2 0.08
18 10 0.40
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAAATTTAAATATAAAT
Found at i:81073933 original size:18 final size:18
Alignment explanation
Indices: 81073893--81073934 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
81073883 ATTAAATATA
81073893 TTTTTTATTATTTTGACT
1 TTTTTTATTATTTTGACT
* * *
81073911 CTTTTTATTGTTTTG-TT
1 TTTTTTATTATTTTGACT
81073928 TTTTTTA
1 TTTTTTA
81073935 AAAAAATTGT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.12, C:0.05, G:0.07, T:0.76
Consensus pattern (18 bp):
TTTTTTATTATTTTGACT
Found at i:81076804 original size:30 final size:30
Alignment explanation
Indices: 81076768--81076890 Score: 174
Period size: 30 Copynumber: 4.1 Consensus size: 30
81076758 GTCCCAGAGT
* *
81076768 AGTTCATATAACCCAGACATAGGTGGTTCG
1 AGTTCATATCACCCGGACATAGGTGGTTCG
*
81076798 AGTTCATATCACCCGGACATGGGTGGTTCG
1 AGTTCATATCACCCGGACATAGGTGGTTCG
* *
81076828 AGTTCATATCACTCGGACATGGGTGGTTCG
1 AGTTCATATCACCCGGACATAGGTGGTTCG
* **
81076858 AGTTCATATCACCCGGATATAGGCAGTTCG
1 AGTTCATATCACCCGGACATAGGTGGTTCG
81076888 AGT
1 AGT
81076891 CCATTTGACC
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 84 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (30 bp):
AGTTCATATCACCCGGACATAGGTGGTTCG
Found at i:81080418 original size:19 final size:17
Alignment explanation
Indices: 81080390--81080426 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
81080380 TTATTTTTTC
81080390 AAATTATTTTTAAATATT
1 AAATTATTTTT-AATATT
81080408 AAATATATTTTTAATATT
1 AAAT-TATTTTTAATATT
81080426 A
1 A
81080427 TAAAACATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
AAATTATTTTTAATATT
Found at i:81080436 original size:19 final size:19
Alignment explanation
Indices: 81080395--81080436 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
81080385 TTTTCAAATT
* *
81080395 ATTTTTAAATATTAAATAT
1 ATTTTTAAATATTAAAAAC
81080414 ATTTTT-AATATTATAAAAC
1 ATTTTTAAATATTA-AAAAC
81080433 ATTT
1 ATTT
81080437 AAAATGATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTTTAAATATTAAAAAC
Found at i:81080476 original size:9 final size:9
Alignment explanation
Indices: 81080397--81080495 Score: 58
Period size: 10 Copynumber: 10.4 Consensus size: 9
81080387 TTCAAATTAT
81080397 TTTTAAATA
1 TTTTAAATA
*
81080406 -TTAAATATA
1 TTTTAA-ATA
*
81080415 TTTTTAATA
1 TTTTAAATA
* *
81080424 TTATAAAACA
1 TT-TTAAATA
*
81080434 TTTAAAATGA
1 TTTTAAAT-A
81080444 -TTTAGAATGA
1 TTTTA-AAT-A
*
81080454 TTTAAAATA
1 TTTTAAATA
*
81080463 TTTTTTAATA
1 -TTTTAAATA
81080473 TTTTAAATGA
1 TTTTAAAT-A
81080483 TTTTAAATA
1 TTTTAAATA
81080492 TTTT
1 TTTT
81080496 TTAAATTTTA
Statistics
Matches: 70, Mismatches: 12, Indels: 16
0.71 0.12 0.16
Matches are distributed among these distances:
8 4 0.06
9 29 0.41
10 34 0.49
11 3 0.04
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (9 bp):
TTTTAAATA
Found at i:81080523 original size:29 final size:29
Alignment explanation
Indices: 81080444--81080505 Score: 99
Period size: 29 Copynumber: 2.1 Consensus size: 29
81080434 TTTAAAATGA
*
81080444 TTTAGAATGATTTAAAATATTTTTTAATAT
1 TTTA-AATGATTTTAAATATTTTTTAATAT
81080474 TTTAAATGATTTTAAATATTTTTTAA-AT
1 TTTAAATGATTTTAAATATTTTTTAATAT
81080502 TTTA
1 TTTA
81080506 CATAGAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 6 0.19
29 21 0.68
30 4 0.13
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (29 bp):
TTTAAATGATTTTAAATATTTTTTAATAT
Found at i:81081031 original size:11 final size:11
Alignment explanation
Indices: 81081015--81081041 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
81081005 ATAAAACTTA
81081015 AAAAAATAAAG
1 AAAAAATAAAG
81081026 AAAAAATAAAG
1 AAAAAATAAAG
81081037 AAAAA
1 AAAAA
81081042 GACAAAATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.07, T:0.07
Consensus pattern (11 bp):
AAAAAATAAAG
Found at i:81081117 original size:21 final size:21
Alignment explanation
Indices: 81081086--81081125 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
81081076 TTTGAAATGT
81081086 ATAAGAAAAATAAATAAAATAG
1 ATAAGAAAAATAAA-AAAATAG
81081108 ATAA-AAAAATAAAAAAAT
1 ATAAGAAAAATAAAAAAAT
81081126 TAGACTTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 9 0.50
22 4 0.22
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (21 bp):
ATAAGAAAAATAAAAAAATAG
Found at i:81081129 original size:21 final size:21
Alignment explanation
Indices: 81081086--81081149 Score: 67
Period size: 24 Copynumber: 2.9 Consensus size: 21
81081076 TTTGAAATGT
81081086 ATAAGAAAAATAAATAAAA-TAG
1 ATAA-AAAAATAAA-AAAATTAG
81081108 ATAAAAAAATAAAAAAATTAG
1 ATAAAAAAATAAAAAAATTAG
*
81081129 ACTTCAAAAAACTAAAAAAAT
1 A--T-AAAAAAATAAAAAAAT
81081150 AAAAAATAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
20 4 0.11
21 13 0.35
22 4 0.11
23 1 0.03
24 15 0.41
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.19
Consensus pattern (21 bp):
ATAAAAAAATAAAAAAATTAG
Found at i:81081188 original size:14 final size:14
Alignment explanation
Indices: 81081171--81081223 Score: 56
Period size: 14 Copynumber: 3.8 Consensus size: 14
81081161 ATTTTTTTAA
81081171 AATTTTAAAAAATT
1 AATTTTAAAAAATT
*
81081185 AA-TTTGAAAAA-T
1 AATTTTAAAAAATT
81081197 ACATTTTTAAAAAATT
1 A-A-TTTTAAAAAATT
*
81081213 AATTTGAAAAA
1 AATTTTAAAAA
81081224 TACATTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
12 2 0.06
13 9 0.28
14 10 0.31
15 9 0.28
16 2 0.06
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.38
Consensus pattern (14 bp):
AATTTTAAAAAATT
Found at i:81081196 original size:13 final size:13
Alignment explanation
Indices: 81081178--81081224 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
81081168 TAAAATTTTA
81081178 AAAAATTAATTTG
1 AAAAATTAATTTG
*
81081191 AAAAA-TACATTTTTA
1 AAAAATTA-A--TTTG
81081206 AAAAATTAATTTG
1 AAAAATTAATTTG
81081219 AAAAAT
1 AAAAAT
81081225 ACATTTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 2 0.07
13 15 0.54
15 9 0.32
16 2 0.07
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.36
Consensus pattern (13 bp):
AAAAATTAATTTG
Found at i:81081204 original size:28 final size:28
Alignment explanation
Indices: 81081173--81081236 Score: 128
Period size: 28 Copynumber: 2.3 Consensus size: 28
81081163 TTTTTTAAAA
81081173 TTTTAAAAAATTAATTTGAAAAATACAT
1 TTTTAAAAAATTAATTTGAAAAATACAT
81081201 TTTTAAAAAATTAATTTGAAAAATACAT
1 TTTTAAAAAATTAATTTGAAAAATACAT
81081229 TTTTAAAA
1 TTTTAAAA
81081237 TTTATAAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (28 bp):
TTTTAAAAAATTAATTTGAAAAATACAT
Found at i:81081315 original size:22 final size:24
Alignment explanation
Indices: 81081287--81081373 Score: 71
Period size: 22 Copynumber: 3.9 Consensus size: 24
81081277 TAAAAAATAT
81081287 TTTTAAAAATAATAAT-TAAAA-A
1 TTTTAAAAATAATAATATAAAACA
*
81081309 TTTT-AAAA-AATATTATAAAACA
1 TTTTAAAAATAATAATATAAAACA
* **
81081331 TTTTAAATAT-AT-AT-TACAAATT
1 TTTTAAAAATAATAATATA-AAACA
*
81081353 TTTTAAAATTAATAATATAAA
1 TTTTAAAAATAATAATATAAA
81081374 TTAAATAAGT
Statistics
Matches: 50, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
20 5 0.10
21 11 0.22
22 21 0.42
23 7 0.14
24 4 0.08
25 2 0.04
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
TTTTAAAAATAATAATATAAAACA
Found at i:81081317 original size:23 final size:22
Alignment explanation
Indices: 81081280--81081337 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
81081270 ATAAAGTTAA
* *
81081280 AAAATATTTTTAAAAATAATAATT
1 AAAACATTTTAAAAAAT-ATAA-T
*
81081304 AAAA-ATTTTAAAAAATATTAT
1 AAAACATTTTAAAAAATATAAT
81081325 AAAACATTTTAAA
1 AAAACATTTTAAA
81081338 TATATATTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 5 0.16
22 11 0.35
23 11 0.35
24 4 0.13
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (22 bp):
AAAACATTTTAAAAAATATAAT
Found at i:81081374 original size:23 final size:22
Alignment explanation
Indices: 81081285--81081375 Score: 62
Period size: 23 Copynumber: 4.1 Consensus size: 22
81081275 GTTAAAAAAT
*
81081285 ATTTTTAAAAATAATAAT-TAA
1 ATTTTTTAAAATAATAATATAA
** *
81081306 AAATTTTAAAA-AATATTATAAA
1 ATTTTTTAAAATAATAATAT-AA
** * *
81081328 ACATTTT-AAATATATATTACAA
1 ATTTTTTAAAATA-ATAATATAA
81081350 ATTTTTTAAAATTAATAATATAA
1 ATTTTTTAAAA-TAATAATATAA
81081373 ATT
1 ATT
81081376 AAATAAGTAA
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
20 5 0.09
21 12 0.22
22 16 0.30
23 19 0.35
24 2 0.04
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTTTTTAAAATAATAATATAA
Found at i:81081403 original size:36 final size:36
Alignment explanation
Indices: 81081363--81081435 Score: 105
Period size: 36 Copynumber: 2.0 Consensus size: 36
81081353 TTTTAAAATT
*
81081363 AATAATAT-AAA-TTAAATAAGTAAAATAAATTAAGAA
1 AATAATATAAAACTTAAA-AAG-AAAAAAAATTAAGAA
81081399 AATAATATAAAACTTAAAAAGAAAAAAAATTAAGAA
1 AATAATATAAAACTTAAAAAGAAAAAAAATTAAGAA
81081435 A
1 A
81081436 GAGACAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
36 23 0.68
37 6 0.18
38 5 0.15
ACGTcount: A:0.70, C:0.01, G:0.05, T:0.23
Consensus pattern (36 bp):
AATAATATAAAACTTAAAAAGAAAAAAAATTAAGAA
Found at i:81081408 original size:18 final size:18
Alignment explanation
Indices: 81081358--81081409 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
81081348 AAATTTTTTA
*
81081358 AAATTAATAATATAAATT
1 AAATAAATAATATAAATT
* *
81081376 AAATAAGTAAAATAAATT
1 AAATAAATAATATAAATT
81081394 AAGA-AAATAATATAAA
1 AA-ATAAATAATATAAA
81081410 ACTTAAAAAG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
18 27 0.96
19 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (18 bp):
AAATAAATAATATAAATT
Found at i:81081465 original size:9 final size:9
Alignment explanation
Indices: 81081451--81081485 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
81081441 AAAATATAAG
81081451 AAAAAAAGT
1 AAAAAAAGT
81081460 AAAAAAAGT
1 AAAAAAAGT
*
81081469 AATAAAAGT
1 AAAAAAAGT
81081478 AATAAAAA
1 AA-AAAAA
81081486 AATATAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 19 0.83
10 4 0.17
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14
Consensus pattern (9 bp):
AAAAAAAGT
Found at i:81086428 original size:35 final size:35
Alignment explanation
Indices: 81086313--81086434 Score: 172
Period size: 35 Copynumber: 3.5 Consensus size: 35
81086303 ATAAAGAAAA
* *
81086313 CCATAATGAGATGTGAAACGTAGGTATGACATTTT
1 CCATACTGAGTTGTGAAACGTAGGTATGACATTTT
* * *
81086348 CCATACCGAGTGGTGAAATGTAGGTATGACATTTT
1 CCATACTGAGTTGTGAAACGTAGGTATGACATTTT
* *
81086383 TCATACTGAGTTGTGAAACGTAGGTATGATATTTT
1 CCATACTGAGTTGTGAAACGTAGGTATGACATTTT
*
81086418 CCATATTGAGTTGTGAA
1 CCATACTGAGTTGTGAA
81086435 CTGTGGCACC
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 75 1.00
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.34
Consensus pattern (35 bp):
CCATACTGAGTTGTGAAACGTAGGTATGACATTTT
Found at i:81093694 original size:40 final size:40
Alignment explanation
Indices: 81093610--81093834 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
81093600 TTGAATGATG
* * * *
81093610 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
81093650 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
81093690 TCCGGGCTAAG-CCGGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81093729 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81093769 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
81093810 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81093835 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 120 0.74
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:81093856 original size:119 final size:119
Alignment explanation
Indices: 81093610--81093867 Score: 274
Period size: 119 Copynumber: 2.2 Consensus size: 119
81093600 TTGAATGATG
* *
81093610 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* * ** *
81093675 GTGCGAGATACTAATTCCGGGCTAAGCCGGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
81093729 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
81093792 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
81093849 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
81093868 TACGTGATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.72
120 30 0.26
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:81101707 original size:40 final size:40
Alignment explanation
Indices: 81101623--81101847 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
81101613 TTGAATGATG
* * * *
81101623 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
81101663 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
81101703 TCCGGGCTAAG-CCGGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81101742 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81101782 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
81101823 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81101848 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 120 0.74
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:81101869 original size:119 final size:119
Alignment explanation
Indices: 81101623--81101880 Score: 274
Period size: 119 Copynumber: 2.2 Consensus size: 119
81101613 TTGAATGATG
* *
81101623 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* * ** *
81101688 GTGCGAGATACTAATTCCGGGCTAAGCCGGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
81101742 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
81101805 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
81101862 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
81101881 TACGTGATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.72
120 30 0.26
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:81105257 original size:35 final size:35
Alignment explanation
Indices: 81105156--81105266 Score: 152
Period size: 35 Copynumber: 3.2 Consensus size: 35
81105146 CATACTATGA
*
81105156 TGTGAAACGTAGGTAT-GTCATTTTCCATACCGAGT
1 TGTGAAACGTAGGTATGGT-ATTTTCCATACTGAGT
* * *
81105191 GGTGAAATGTAGGTATGGTATTTTTCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTTTCCATACTGAGT
* *
81105226 TGTGAAACGTAGGTATGGTATTTTCCTTACTGAAT
1 TGTGAAACGTAGGTATGGTATTTTCCATACTGAGT
81105261 TGTGAA
1 TGTGAA
81105267 TTGTGGCACT
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
35 64 0.97
36 2 0.03
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATTTTCCATACTGAGT
Found at i:81111203 original size:47 final size:47
Alignment explanation
Indices: 81111125--81111530 Score: 634
Period size: 47 Copynumber: 8.6 Consensus size: 47
81111115 CCCTTCGGGA
* * * * * *
81111125 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCAATCGGTC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-C
*
81111173 C-TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81111219 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81111266 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81111313 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81111362 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81111409 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81111458 CTTATCACATATATACACTTTCACATTCATCACACCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81111505 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
81111531 CACAATTATC
Statistics
Matches: 334, Mismatches: 19, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
46 2 0.01
47 239 0.72
48 1 0.00
49 92 0.28
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81111363 original size:96 final size:96
Alignment explanation
Indices: 81111125--81111530 Score: 673
Period size: 96 Copynumber: 4.3 Consensus size: 96
81111115 CCCTTCGGGA
* * * * *
81111125 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCAATCGGTCC-TGTCACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGG-CCTTATCACATATATA
81111187 CACTTTCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
* * *
81111219 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
81111282 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
81111313 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
81111378 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
81111409 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
*
81111474 ACTTTCACATTCATCACACCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
81111505 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
81111531 CACAATTATC
Statistics
Matches: 295, Mismatches: 12, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
93 3 0.01
94 94 0.32
96 198 0.67
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81111381 original size:143 final size:141
Alignment explanation
Indices: 81111125--81111530 Score: 643
Period size: 143 Copynumber: 2.9 Consensus size: 141
81111115 CCCTTCGGGA
* * * * * *
81111125 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCAATCGGTCC-TGTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGG-CCTTATCACATATATACA
*
81111189 CTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACAT
65 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
*
81111254 CGGCTATTAGGC
130 CGGCCATTAGGC
*
81111266 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC--ATATATAC
*
81111331 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
81111396 TCGGCCATTAGGC
129 TCGGCCATTAGGC
81111409 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
* * *
81111474 ACTTTCACATTCATCACACCGGCCATTAGGCCTTATCACATATATATACATTCACAT
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
81111531 CACAATTATC
Statistics
Matches: 245, Mismatches: 15, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
140 2 0.01
141 45 0.18
143 152 0.62
145 46 0.19
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:81119804 original size:18 final size:18
Alignment explanation
Indices: 81119743--81119824 Score: 83
Period size: 18 Copynumber: 4.6 Consensus size: 18
81119733 TAACATTCAA
* *
81119743 TTATTTAGTAGCAATTAG
1 TTATTCAGTAGCAATCAG
* *
81119761 TTATTCAATAGCAATCAT
1 TTATTCAGTAGCAATCAG
**
81119779 TTGCTCAGTAGCAATCAG
1 TTATTCAGTAGCAATCAG
* * *
81119797 TTATTCAGTAACGATCAA
1 TTATTCAGTAGCAATCAG
81119815 TTATTCAGTA
1 TTATTCAGTA
81119825 ATAGTCAGTC
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 51 1.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (18 bp):
TTATTCAGTAGCAATCAG
Found at i:81119823 original size:36 final size:35
Alignment explanation
Indices: 81119731--81119842 Score: 98
Period size: 36 Copynumber: 3.1 Consensus size: 35
81119721 AGTTTCATTT
* *
81119731 AGTAACATTCAATTATTTAGTAGCAATTAGTTATTC
1 AGTAACA-TCAATTATTCAGTAGCAATCAGTTATTC
* * * **
81119767 AATAGCAATCATTTGCTCAGTAGCAATCAGTTATTC
1 AGTAAC-ATCAATTATTCAGTAGCAATCAGTTATTC
** * *
81119803 AGTAACGATCAATTATTCAGTAATAGTCAGTCATTC
1 AGTAAC-ATCAATTATTCAGTAGCAATCAGTTATTC
81119839 AGTA
1 AGTA
81119843 CTTTTATTTA
Statistics
Matches: 58, Mismatches: 17, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
36 57 0.98
37 1 0.02
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (35 bp):
AGTAACATCAATTATTCAGTAGCAATCAGTTATTC
Found at i:81121299 original size:28 final size:30
Alignment explanation
Indices: 81121259--81121329 Score: 103
Period size: 28 Copynumber: 2.4 Consensus size: 30
81121249 ATAATTATTT
81121259 AATTAATAAATATCT-TTTACTT-AATAATA
1 AATTAATAAATATCTATTTACTTAAATAA-A
81121288 AA-TAATAAATATCTATTTACTTAAATAAA
1 AATTAATAAATATCTATTTACTTAAATAAA
81121317 AATTAATTAAATA
1 AATTAA-TAAATA
81121330 AATATATCGC
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
28 12 0.32
29 12 0.32
30 8 0.21
31 6 0.16
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.41
Consensus pattern (30 bp):
AATTAATAAATATCTATTTACTTAAATAAA
Found at i:81123098 original size:17 final size:18
Alignment explanation
Indices: 81123076--81123115 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
81123066 ACTTATGTGT
81123076 ATATAAA-AATTAATAAA
1 ATATAAATAATTAATAAA
* *
81123093 ATATAAATGATTATTAAA
1 ATATAAATAATTAATAAA
81123111 ATATA
1 ATATA
81123116 TATTATGTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (18 bp):
ATATAAATAATTAATAAA
Found at i:81124445 original size:10 final size:10
Alignment explanation
Indices: 81124430--81124456 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
81124420 TTTATAGCCG
81124430 AAAAATAAAT
1 AAAAATAAAT
81124440 AAAAATAAAT
1 AAAAATAAAT
81124450 AAAAATA
1 AAAAATA
81124457 GATTTCCTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (10 bp):
AAAAATAAAT
Found at i:81126806 original size:15 final size:13
Alignment explanation
Indices: 81126788--81126868 Score: 56
Period size: 16 Copynumber: 5.6 Consensus size: 13
81126778 CCTTTCCATG
81126788 TTCTTGTTTTCTTT
1 TTCTT-TTTTCTTT
81126802 CTTCTTCTTTTC-TT
1 -TTCTT-TTTTCTTT
* *
81126816 TTCTTTGTTATTT
1 TTCTTTTTTCTTT
81126829 CTTCTTTTTTTTCTTT
1 -TTC--TTTTTTCTTT
81126845 TTCTTTTCTTCCGTTT
1 TTCTTTT-TT-C-TTT
81126861 TTCTTTTT
1 TTCTTTTT
81126869 ACTTCGTTGC
Statistics
Matches: 54, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
12 3 0.06
13 11 0.20
14 7 0.13
15 15 0.28
16 18 0.33
ACGTcount: A:0.01, C:0.19, G:0.04, T:0.77
Consensus pattern (13 bp):
TTCTTTTTTCTTT
Found at i:81126815 original size:11 final size:10
Alignment explanation
Indices: 81126794--81126854 Score: 51
Period size: 10 Copynumber: 6.2 Consensus size: 10
81126784 CATGTTCTTG
81126794 TTTTC-TTTC
1 TTTTCTTTTC
81126803 TTCTTCTTTTC
1 TT-TTCTTTTC
81126814 TTTTCTTTGT-
1 TTTTCTTT-TC
81126824 TATTTC--TTC
1 T-TTTCTTTTC
81126833 TTTT-TTTTC
1 TTTTCTTTTC
81126842 TTTTTCTTTTC
1 -TTTTCTTTTC
81126853 TT
1 TT
81126855 CCGTTTTTCT
Statistics
Matches: 43, Mismatches: 0, Indels: 17
0.72 0.00 0.28
Matches are distributed among these distances:
8 4 0.09
9 7 0.16
10 16 0.37
11 16 0.37
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.79
Consensus pattern (10 bp):
TTTTCTTTTC
Found at i:81128017 original size:12 final size:12
Alignment explanation
Indices: 81128000--81128040 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
81127990 AGGAGATATT
81128000 TGATATGTTATA
1 TGATATGTTATA
* *
81128012 TGATATG--CTC
1 TGATATGTTATA
81128022 TGATATGTTATA
1 TGATATGTTATA
81128034 TGATATG
1 TGATATG
81128041 ATTCTGATAG
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
10 8 0.35
12 15 0.65
ACGTcount: A:0.29, C:0.05, G:0.20, T:0.46
Consensus pattern (12 bp):
TGATATGTTATA
Found at i:81128026 original size:22 final size:23
Alignment explanation
Indices: 81128000--81128085 Score: 104
Period size: 22 Copynumber: 3.8 Consensus size: 23
81127990 AGGAGATATT
*
81128000 TGATATGTTATATGATATG-CTC
1 TGATATGTTATATGATATGATTC
81128022 TGATATGTTATATGATATGATTC
1 TGATATGTTATATGATATGATTC
* * *
81128045 TGATA-GTTAAATAATATGATTT
1 TGATATGTTATATGATATGATTC
* *
81128067 TGATATGCTACATGATATG
1 TGATATGTTATATGATATG
81128086 GGAAATTCTA
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
22 38 0.69
23 17 0.31
ACGTcount: A:0.33, C:0.06, G:0.17, T:0.44
Consensus pattern (23 bp):
TGATATGTTATATGATATGATTC
Found at i:81131756 original size:10 final size:10
Alignment explanation
Indices: 81131726--81131759 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
81131716 AACCCTAATT
*
81131726 TTTTCTTTTCT
1 TTTTC-TTTCC
81131737 TTTTCTTTCC
1 TTTTCTTTCC
81131747 TTTTCTTTCC
1 TTTTCTTTCC
81131757 TTT
1 TTT
81131760 CTATTTCGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 17 0.77
11 5 0.23
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTCTTTCC
Found at i:81131836 original size:3 final size:3
Alignment explanation
Indices: 81131818--81131865 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
81131808 TTCACTTTTA
*
81131818 ATT ATT A-T ATT A-T ATT ATT ATT A-T ATT -TT AGTA ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
81131860 ATT ATT
1 ATT ATT
81131866 TACTTATAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 8 0.21
3 28 0.74
4 2 0.05
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:81133657 original size:13 final size:13
Alignment explanation
Indices: 81133639--81133666 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
81133629 GACTATGCTT
81133639 TCCTTAAGGTACC
1 TCCTTAAGGTACC
81133652 TCCTTAAGGTACC
1 TCCTTAAGGTACC
81133665 TC
1 TC
81133667 GTTACAGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.32, G:0.14, T:0.32
Consensus pattern (13 bp):
TCCTTAAGGTACC
Found at i:81135127 original size:13 final size:13
Alignment explanation
Indices: 81135109--81135136 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
81135099 GACTATGCTT
81135109 TCCTTAAGGTACC
1 TCCTTAAGGTACC
81135122 TCCTTAAGGTACC
1 TCCTTAAGGTACC
81135135 TC
1 TC
81135137 GTTACAGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.32, G:0.14, T:0.32
Consensus pattern (13 bp):
TCCTTAAGGTACC
Found at i:81136597 original size:13 final size:13
Alignment explanation
Indices: 81136579--81136603 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81136569 GACCATGCTT
81136579 TCCTTAAGGTACA
1 TCCTTAAGGTACA
81136592 TCCTTAAGGTAC
1 TCCTTAAGGTAC
81136604 CTCGTTACAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (13 bp):
TCCTTAAGGTACA
Found at i:81138947 original size:5 final size:5
Alignment explanation
Indices: 81138921--81138997 Score: 59
Period size: 5 Copynumber: 14.8 Consensus size: 5
81138911 CACATTCTTG
* * *
81138921 TTTCT TTTCT CCTTCT GTTCT TTTCT TTGT-T ATT-T TTTCTT TTTCT
1 TTTCT TTTCT -TTTCT TTTCT TTTCT TT-TCT TTTCT TTTC-T TTTCT
*
81138967 TTTCTT TTTCT TTTCT TTTGT TTTGCT TTTC
1 TTTC-T TTTCT TTTCT TTTCT TTT-CT TTTC
81138998 GCTTCATTGC
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
4 4 0.07
5 36 0.61
6 19 0.32
ACGTcount: A:0.01, C:0.18, G:0.05, T:0.75
Consensus pattern (5 bp):
TTTCT
Found at i:81138965 original size:6 final size:6
Alignment explanation
Indices: 81138954--81138985 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
81138944 TCTTTGTTAT
81138954 TTTTTC TTTTTC -TTTTC TTTTTC -TTTTC TTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTT
81138986 GTTTTGCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 10 0.42
6 14 0.58
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTC
Found at i:81138971 original size:11 final size:11
Alignment explanation
Indices: 81138915--81138985 Score: 67
Period size: 11 Copynumber: 6.6 Consensus size: 11
81138905 TCTTTCCACA
81138915 TTCTTGTTTCTT
1 TTCTT-TTTCTT
** *
81138927 TTCTCCTTCTG
1 TTCTTTTTCTT
81138938 TTC-TTTTC-T
1 TTCTTTTTCTT
* *
81138947 TTGTTATT-TT
1 TTCTTTTTCTT
81138957 TTCTTTTTCTT
1 TTCTTTTTCTT
81138968 TTCTTTTTCTT
1 TTCTTTTTCTT
81138979 TTCTTTT
1 TTCTTTT
81138986 GTTTTGCTTT
Statistics
Matches: 46, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
9 2 0.04
10 13 0.28
11 27 0.59
12 4 0.09
ACGTcount: A:0.01, C:0.18, G:0.04, T:0.76
Consensus pattern (11 bp):
TTCTTTTTCTT
Found at i:81138995 original size:11 final size:10
Alignment explanation
Indices: 81138921--81138997 Score: 59
Period size: 11 Copynumber: 7.4 Consensus size: 10
81138911 CACATTCTTG
81138921 TTTCTTTTCT
1 TTTCTTTTCT
* *
81138931 CCTTCTGTTCT
1 -TTTCTTTTCT
81138942 TTTCTTTGT-T
1 TTTCTTT-TCT
*
81138952 ATT-TTTTCTT
1 TTTCTTTTC-T
81138962 TTTCTTTTCTT
1 TTTCTTTTC-T
81138973 TTTCTTTTCT
1 TTTCTTTTCT
*
81138983 TTTGTTTTGCT
1 TTTCTTTT-CT
81138994 TTTC
1 TTTC
81138998 GCTTCATTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
8 1 0.02
9 3 0.06
10 19 0.36
11 30 0.57
ACGTcount: A:0.01, C:0.18, G:0.05, T:0.75
Consensus pattern (10 bp):
TTTCTTTTCT
Found at i:81140130 original size:5 final size:5
Alignment explanation
Indices: 81140110--81140175 Score: 53
Period size: 5 Copynumber: 12.2 Consensus size: 5
81140100 GTAGCGAATG
*
81140110 ATGAT AGGAT AT-AT ATGAT ATGTTAT ATGAT ATGTTAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATG--AT ATGAT ATG--AT ATGAT ATGAT
*
81140158 CTGAT ATGCTAT ATGAT A
1 ATGAT ATG--AT ATGAT A
81140176 CGATTCTAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
4 4 0.08
5 31 0.62
7 15 0.30
ACGTcount: A:0.36, C:0.03, G:0.18, T:0.42
Consensus pattern (5 bp):
ATGAT
Found at i:81140138 original size:12 final size:12
Alignment explanation
Indices: 81140121--81140175 Score: 78
Period size: 12 Copynumber: 4.8 Consensus size: 12
81140111 TGATAGGATA
81140121 TATATGATATGT
1 TATATGATATGT
81140133 TATATGATATGT
1 TATATGATATGT
81140145 TATATGATATG-
1 TATATGATATGT
* *
81140156 -ATCTGATATGC
1 TATATGATATGT
81140167 TATATGATA
1 TATATGATA
81140176 CGATTCTAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.23
12 30 0.77
ACGTcount: A:0.35, C:0.04, G:0.16, T:0.45
Consensus pattern (12 bp):
TATATGATATGT
Found at i:81140142 original size:17 final size:17
Alignment explanation
Indices: 81140118--81140175 Score: 64
Period size: 17 Copynumber: 3.5 Consensus size: 17
81140108 TGATGATAGG
81140118 ATAT-ATATGATATGTT
1 ATATGATATGATATGTT
* * *
81140134 ATATGATATGTTATATG
1 ATATGATATGATATGTT
* *
81140151 ATATGATCTGATATGCT
1 ATATGATATGATATGTT
81140168 ATATGATA
1 ATATGATA
81140176 CGATTCTAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
16 4 0.12
17 28 0.88
ACGTcount: A:0.36, C:0.03, G:0.16, T:0.45
Consensus pattern (17 bp):
ATATGATATGATATGTT
Found at i:81151018 original size:31 final size:32
Alignment explanation
Indices: 81150968--81151027 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
81150958 TTAAAAAATA
81150968 ATTAAAATAATATTTTTTTA-TAAAATAAACT
1 ATTAAAATAATATTTTTTTAGTAAAATAAACT
* *
81150999 ATTAAAAT-ATTTATTTTTTAGTATAATAA
1 ATTAAAATAATAT-TTTTTTAGTAAAATAA
81151028 CTTAATTGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 3 0.12
31 15 0.60
32 7 0.28
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (32 bp):
ATTAAAATAATATTTTTTTAGTAAAATAAACT
Found at i:81151301 original size:26 final size:27
Alignment explanation
Indices: 81151261--81151319 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 27
81151251 ATAATTATTT
*
81151261 TTAAAAATTAGAAATTA-TTAAAATTA
1 TTAAAAAGTAGAAATTATTTAAAATTA
*
81151287 TTAAAAAGTATAAATTATTTTAAAATTA
1 TTAAAAAGTAGAAATTA-TTTAAAATTA
81151315 -TAAAA
1 TTAAAA
81151320 GTTTTAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 15 0.52
27 5 0.17
28 9 0.31
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (27 bp):
TTAAAAAGTAGAAATTATTTAAAATTA
Found at i:81151316 original size:18 final size:17
Alignment explanation
Indices: 81151267--81151318 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
81151257 ATTTTTAAAA
*
81151267 ATTAGAAATTATTAAAATT
1 ATTAAAAATTA-T-AAATT
*
81151286 ATTAAAAAGTATAAATT
1 ATTAAAAATTATAAATT
*
81151303 ATTTTAAAATTATAAA
1 A-TTAAAAATTATAAA
81151319 AGTTTTAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 6 0.21
18 13 0.46
19 9 0.32
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (17 bp):
ATTAAAAATTATAAATT
Found at i:81153680 original size:6 final size:6
Alignment explanation
Indices: 81153664--81153694 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
81153654 CCTCCAAAGC
81153664 TTCTGGT TTCTGT TTCTGT TTCTGT TTCTGT
1 TTCT-GT TTCTGT TTCTGT TTCTGT TTCTGT
81153695 CTAGTCGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.83
7 4 0.17
ACGTcount: A:0.00, C:0.16, G:0.19, T:0.65
Consensus pattern (6 bp):
TTCTGT
Found at i:81156004 original size:32 final size:33
Alignment explanation
Indices: 81155941--81156015 Score: 89
Period size: 33 Copynumber: 2.3 Consensus size: 33
81155931 ATATAAATTC
* * *
81155941 AAAAAGTAAAAAAAAAGTTTTAGTTAATTTTTT
1 AAAAAATAAAAAAAAAGTCTAAGTTAATTTTTT
* * *
81155974 AAAAATTAAAAAAATAGTCTAAGTT-TTTTTTT
1 AAAAAATAAAAAAAAAGTCTAAGTTAATTTTTT
81156006 AAAAAATAAA
1 AAAAAATAAA
81156016 TTCTAGAAAC
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
32 15 0.42
33 21 0.58
ACGTcount: A:0.55, C:0.01, G:0.07, T:0.37
Consensus pattern (33 bp):
AAAAAATAAAAAAAAAGTCTAAGTTAATTTTTT
Found at i:81157590 original size:4 final size:4
Alignment explanation
Indices: 81157581--81157629 Score: 89
Period size: 4 Copynumber: 12.2 Consensus size: 4
81157571 ACATGTTAAA
*
81157581 TAGT TAGT TAGT TAGT TAGT TAGT TAGT TAGT TAGT TAGT TAGT GAGT
1 TAGT TAGT TAGT TAGT TAGT TAGT TAGT TAGT TAGT TAGT TAGT TAGT
81157629 T
1 T
81157630 GTCATGCTTA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (4 bp):
TAGT
Found at i:81161890 original size:20 final size:22
Alignment explanation
Indices: 81161867--81161914 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
81161857 AGCACAATTA
81161867 GCAATCAGGG-GCAACAAA-AT
1 GCAATCAGGGAGCAACAAAGAT
* *
81161887 GCAATC-GGGAGCACCAAAGTT
1 GCAATCAGGGAGCAACAAAGAT
81161908 GCAATCA
1 GCAATCA
81161915 TGTACATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.13
20 13 0.57
21 7 0.30
ACGTcount: A:0.40, C:0.23, G:0.25, T:0.12
Consensus pattern (22 bp):
GCAATCAGGGAGCAACAAAGAT
Found at i:81174781 original size:62 final size:62
Alignment explanation
Indices: 81174702--81174828 Score: 164
Period size: 62 Copynumber: 2.0 Consensus size: 62
81174692 TTCCAAATCT
* * ** * * *
81174702 AAAAATTCAACAAATTTAGCTCTTAATGTTTACAAAACTTGTCATTTTAGTTCTGATTCTAA
1 AAAAATTCAACAAATTTAGCCCTCAACATTTACAAAACTTGTCAATCTAGTTCTAATTCTAA
* * *
81174764 AAAAATTCAATATATTTAGCCCTCAACATTTACAAAATTTGTCAATCTAGTTCTAATTCTAA
1 AAAAATTCAACAAATTTAGCCCTCAACATTTACAAAACTTGTCAATCTAGTTCTAATTCTAA
81174826 AAA
1 AAA
81174829 TTCCAAATTA
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.40, C:0.16, G:0.06, T:0.38
Consensus pattern (62 bp):
AAAAATTCAACAAATTTAGCCCTCAACATTTACAAAACTTGTCAATCTAGTTCTAATTCTAA
Found at i:81176423 original size:91 final size:92
Alignment explanation
Indices: 81176265--81176537 Score: 386
Period size: 91 Copynumber: 3.0 Consensus size: 92
81176255 TTATCTTCGA
* * * *
81176265 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTT
1 CATGATGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTT
*
81176330 TCAACCATGGTTTTATTCATTTCCTGT
66 TCAACCATGGTTTTATTCATTTCATGT
* * *
81176357 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTCCCGTCATGTTGCCATGGTATCTT
1 CATGATGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTT
*
81176421 TCAACCATGGTTTTATTCTTTTCATGT
66 TCAACCATGGTTTTATTCATTTCATGT
* * * * *
81176448 CACGATGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGTCATGGTATCTT
1 CATGATGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTT
* **
81176513 TCAACCATGGTCTTACACATTTCAT
66 TCAACCATGGTTTTATTCATTTCAT
81176538 TTCAGAAAGC
Statistics
Matches: 159, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
91 83 0.52
92 76 0.48
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (92 bp):
CATGATGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTT
TCAACCATGGTTTTATTCATTTCATGT
Found at i:81176497 original size:137 final size:137
Alignment explanation
Indices: 81176265--81176527 Score: 384
Period size: 137 Copynumber: 1.9 Consensus size: 137
81176255 TTATCTTCGA
* * * *
81176265 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTTCTGTCACGATGCCATGGTATCTT
* ** * *
81176330 TCAACCATGGTTTTATTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
66 TCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
81176395 TTCCCGT
131 TTCCCGT
* * * *
81176402 CATGTTGCCATGGTATCTTTCAACCATGGTTTTATTC-TTTTCATGTCACGATGCCATGGTATCT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTTC-TGTCACGATGCCATGGTATCT
*
81176466 TTCAACCATGGTCTTACACATTTCATATCATGTTGTCATGGTATCTTTCAACCATGGTCTTA
65 TTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
81176528 CACATTTCAT
Statistics
Matches: 111, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
136 5 0.05
137 106 0.95
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (137 bp):
CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTTCTGTCACGATGCCATGGTATCTT
TCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
TTCCCGT
Found at i:81176535 original size:21 final size:21
Alignment explanation
Indices: 81176465--81176536 Score: 58
Period size: 21 Copynumber: 3.2 Consensus size: 21
81176455 CCATGGTATC
81176465 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
* *
81176486 TTTCATATCATGTTGTCATGGTA-TC-
1 TTTCA-ACCATG--GTC-T--TACACA
81176511 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
81176532 TTTCA
1 TTTCA
81176537 TTTCAGAAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
19 2 0.05
20 1 0.03
21 11 0.28
22 8 0.21
24 8 0.21
25 6 0.15
26 1 0.03
27 2 0.05
ACGTcount: A:0.25, C:0.24, G:0.11, T:0.40
Consensus pattern (21 bp):
TTTCAACCATGGTCTTACACA
Found at i:81176535 original size:46 final size:46
Alignment explanation
Indices: 81176265--81176537 Score: 352
Period size: 46 Copynumber: 6.0 Consensus size: 46
81176255 TTATCTTCGA
* * * *
81176265 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
* * *
81176311 CATGTTGCCATGGTATCTTTCAACCATGGTTTTATTCATTTCCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* **
81176357 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
81176402 CATGTTGCCATGGTATCTTTCAACCATGGTTTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * * *
81176448 CACGATGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
81176494 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
81176538 TTCAGAAAGC
Statistics
Matches: 203, Mismatches: 22, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
45 46 0.23
46 157 0.77
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:81181431 original size:48 final size:48
Alignment explanation
Indices: 81181318--81181535 Score: 243
Period size: 48 Copynumber: 4.6 Consensus size: 48
81181308 GGTATGATGT
* * * * *
81181318 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGT--
1 CGATGCCATGTCCCAGACATAGTCTTACACTAACACATCTAT-ACGTGC
* * *
81181365 CGATGCTATGTCCCAGACATAGTCTTACACTAACACCTCTATATGTGC
1 CGATGCCATGTCCCAGACATAGTCTTACACTAACACATCTATACGTGC
* * *
81181413 CGATGCCATGTCCCAGACATAGTCATACACTAACACCTCTATACATGC
1 CGATGCCATGTCCCAGACATAGTCTTACACTAACACATCTATACGTGC
* * *
81181461 CGATGCCATGTCCCAGACATGGTATTACACTGACACATC--T-CGTAGC
1 CGATGCCATGTCCCAGACATAGTCTTACACTAACACATCTATACGT-GC
81181507 CGATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATAGTCTTACACT
81181536 GGCTTACATC
Statistics
Matches: 150, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
44 9 0.06
45 16 0.11
46 11 0.07
47 36 0.24
48 78 0.52
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATAGTCTTACACTAACACATCTATACGTGC
Found at i:81181545 original size:46 final size:47
Alignment explanation
Indices: 81181462--81181674 Score: 183
Period size: 46 Copynumber: 4.6 Consensus size: 47
81181452 TATACATGCC
* * *
81181462 GATGCCATGTCCCAGACATGGTATTACACTGAC--ACATCTCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGTAGGCT
81181508 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCG-AGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTAGGCT
* * * *** * *
81181554 AATGCATGTCTCAGACATGTCTTACACTAGCTTTTGTCTC-AATGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTAGGCT
* * *
81181600 GATGCCATGTCCCAGATATGGTCTTACACCGGCTCT-CATAAT-GT-GGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCGTAGGCT
81181648 GATGCATGT-CCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
81181675 AGCGCACAAA
Statistics
Matches: 136, Mismatches: 22, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
44 11 0.08
45 24 0.18
46 62 0.46
47 17 0.12
48 20 0.15
49 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTAGGCT
Found at i:81181609 original size:93 final size:92
Alignment explanation
Indices: 81181508--81181677 Score: 238
Period size: 93 Copynumber: 1.8 Consensus size: 92
81181498 TCTCGTAGCC
* *
81181508 GATGCATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCGAGGCTAATGCATGTCTCAGAC
1 GATGCATGTCCCAGACATGGTCTTACACCGGCTCT-CATAAT-GAGGCTAATGCATGTC-CAGAC
81181570 ATGTCTTACACTAGCTTTTGTCTCAATGCT
63 ATGTCTTACACTAGCTTTTGTCTCAATGCT
* * *
81181600 GATGCCATGTCCCAGATATGGTCTTACACCGGCTCTCATAATGTGGCTGATGCATGTCCAGACAT
1 GATG-CATGTCCCAGACATGGTCTTACACCGGCTCTCATAATGAGGCTAATGCATGTCCAGACAT
81181665 GTCTTACACTAGC
65 GTCTTACACTAGC
81181678 GCACAAATAA
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
92 4 0.06
93 33 0.48
94 30 0.43
95 2 0.03
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGGTCTTACACCGGCTCTCATAATGAGGCTAATGCATGTCCAGACATG
TCTTACACTAGCTTTTGTCTCAATGCT
Found at i:81190751 original size:22 final size:22
Alignment explanation
Indices: 81190708--81190751 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
81190698 ATTTCCAAAT
* *
81190708 GAAATCTCATTCCTATTTATAG
1 GAAATCTCATGCCTATTCATAG
* *
81190730 GAAATTTCATGCCTCTTCATAG
1 GAAATCTCATGCCTATTCATAG
81190752 AGACTTCTTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (22 bp):
GAAATCTCATGCCTATTCATAG
Found at i:81192746 original size:42 final size:42
Alignment explanation
Indices: 81192689--81192770 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
81192679 TATGATTTGT
* *
81192689 AGATTTTGTTATTTTTATTCTTAAAATCAAATTATGCTTAGA
1 AGATTATGTTATTTTTATTCTTAAAATCAAAATATGCTTAGA
* *
81192731 AGATTATGTTGTTTTTATTTTTAAAATCAAAATATGCTTA
1 AGATTATGTTATTTTTATTCTTAAAATCAAAATATGCTTA
81192771 TAGTTCCATA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.34, C:0.06, G:0.10, T:0.50
Consensus pattern (42 bp):
AGATTATGTTATTTTTATTCTTAAAATCAAAATATGCTTAGA
Found at i:81194881 original size:18 final size:18
Alignment explanation
Indices: 81194858--81194896 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
81194848 ATAATTGATA
*
81194858 TATTTT-AATTATGCTTAT
1 TATTTTGAATAATG-TTAT
81194876 TATTTTGAATAATGTTAT
1 TATTTTGAATAATGTTAT
81194894 TAT
1 TAT
81194897 ACAGAACTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.59
Consensus pattern (18 bp):
TATTTTGAATAATGTTAT
Found at i:81195845 original size:20 final size:20
Alignment explanation
Indices: 81195822--81195886 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
81195812 TGTTTTGGAA
81195822 CACACGGTCGTGTCTGATAG
1 CACACGGTCGTGTCTGATAG
** ***
81195842 CACACTGGT-GTGTGAGACCT
1 CACAC-GGTCGTGTCTGATAG
* *
81195862 CACACGGCCGTGTCTGATGG
1 CACACGGTCGTGTCTGATAG
81195882 CACAC
1 CACAC
81195887 TGGCGTGTGA
Statistics
Matches: 32, Mismatches: 11, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
19 2 0.06
20 27 0.84
21 3 0.09
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (20 bp):
CACACGGTCGTGTCTGATAG
Found at i:81195866 original size:40 final size:41
Alignment explanation
Indices: 81195822--81195911 Score: 146
Period size: 40 Copynumber: 2.2 Consensus size: 41
81195812 TGTTTTGGAA
*
81195822 CACACGGTCGTGTCTGATAGCACACTGGTGTGTGAGA-CCT
1 CACACGGTCGTGTCTGATAGCACACTGGCGTGTGAGACCCT
* *
81195862 CACACGGCCGTGTCTGATGGCACACTGGCGTGTGAGACCCT
1 CACACGGTCGTGTCTGATAGCACACTGGCGTGTGAGACCCT
81195903 CACACGGTC
1 CACACGGTC
81195912 ATGTTTGCCC
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
40 34 0.76
41 11 0.24
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (41 bp):
CACACGGTCGTGTCTGATAGCACACTGGCGTGTGAGACCCT
Found at i:81195893 original size:20 final size:20
Alignment explanation
Indices: 81195830--81195894 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
81195820 AACACACGGT
81195830 CGTGTCTGATAGCACACTGG
1 CGTGTCTGATAGCACACTGG
* ** ***
81195850 TGTGTGAGACCTCACAC-GG
1 CGTGTCTGATAGCACACTGG
*
81195869 CCGTGTCTGATGGCACACTGG
1 -CGTGTCTGATAGCACACTGG
81195890 CGTGT
1 CGTGT
81195895 GAGACCCTCA
Statistics
Matches: 31, Mismatches: 12, Indels: 4
0.66 0.26 0.09
Matches are distributed among these distances:
19 2 0.06
20 27 0.87
21 2 0.06
ACGTcount: A:0.17, C:0.26, G:0.32, T:0.25
Consensus pattern (20 bp):
CGTGTCTGATAGCACACTGG
Found at i:81197932 original size:51 final size:51
Alignment explanation
Indices: 81197851--81197953 Score: 179
Period size: 51 Copynumber: 2.0 Consensus size: 51
81197841 AAAAACTACT
* *
81197851 TCTACAACATATAGAATATAAAACTATCGTATAAAAGATAAAGTCATAAAA
1 TCTAAAACATATAAAATATAAAACTATCGTATAAAAGATAAAGTCATAAAA
*
81197902 TCTAAAACATATAAAATTTAAAACTATCGTATAAAAGATAAAGTCATAAAA
1 TCTAAAACATATAAAATATAAAACTATCGTATAAAAGATAAAGTCATAAAA
81197953 T
1 T
81197954 TCATACTAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.55, C:0.11, G:0.07, T:0.27
Consensus pattern (51 bp):
TCTAAAACATATAAAATATAAAACTATCGTATAAAAGATAAAGTCATAAAA
Found at i:81198151 original size:5 final size:5
Alignment explanation
Indices: 81198141--81198177 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
81198131 ACCTCTGTGA
81198141 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
81198178 GAACACACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:81198161 original size:15 final size:14
Alignment explanation
Indices: 81198141--81198177 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
81198131 ACCTCTGTGA
81198141 AAAATAAAATAAAAT
1 AAAATAAAAT-AAAT
81198156 AAAATAAAATAAAT
1 AAAATAAAATAAAT
81198170 AAAATAAA
1 AAAATAAA
81198178 GAACACACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAAATAAAATAAAT
Found at i:81200427 original size:5 final size:5
Alignment explanation
Indices: 81200417--81200448 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
81200407 CAATTTATGA
81200417 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
81200449 GAACATACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:81200442 original size:9 final size:9
Alignment explanation
Indices: 81200418--81200448 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
81200408 AATTTATGAA
81200418 AAATAAAAT
1 AAATAAAAT
81200427 AAAATAAAAT
1 -AAATAAAAT
81200437 AAATAAAAT
1 AAATAAAAT
81200446 AAA
1 AAA
81200449 GAACATACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:81206674 original size:24 final size:24
Alignment explanation
Indices: 81206630--81206689 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
81206620 AGTAAAATTT
*
81206630 TATTTGTAATAAAATAGGTTAGCTG
1 TATTTGT-ATAAAATAGGTTAACTG
*
81206655 TATTTGTATAAATTTA-GTTAACTG
1 TATTTGTATAAA-ATAGGTTAACTG
81206679 TATTTGTATAA
1 TATTTGTATAA
81206690 GTTACTAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
24 23 0.72
25 9 0.28
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (24 bp):
TATTTGTATAAAATAGGTTAACTG
Found at i:81207901 original size:15 final size:15
Alignment explanation
Indices: 81207883--81207915 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
81207873 AATAACTATG
81207883 TTCAAA-ATTATGAAT
1 TTCAAATATTAT-AAT
81207898 TTCAAATATTATAAT
1 TTCAAATATTATAAT
81207913 TTC
1 TTC
81207916 TAAACAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.42, C:0.09, G:0.03, T:0.45
Consensus pattern (15 bp):
TTCAAATATTATAAT
Found at i:81210172 original size:13 final size:13
Alignment explanation
Indices: 81210135--81210190 Score: 62
Period size: 13 Copynumber: 4.2 Consensus size: 13
81210125 AATAACAAAA
81210135 AGAAAATATATAAT
1 AGAAAATA-ATAAT
81210149 -GTAATAATAATAAT
1 AG-AA-AATAATAAT
81210163 AGAAAATAATAAT
1 AGAAAATAATAAT
81210176 A-AAAATAAATAAT
1 AGAAAAT-AATAAT
81210189 AG
1 AG
81210191 GGATAATAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
12 5 0.14
13 18 0.49
14 9 0.24
15 5 0.14
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (13 bp):
AGAAAATAATAAT
Found at i:81210174 original size:19 final size:18
Alignment explanation
Indices: 81210150--81210222 Score: 67
Period size: 19 Copynumber: 3.9 Consensus size: 18
81210140 ATATATAATG
81210150 TAATAATAATAATAGAAAA
1 TAATAATAATAATA-AAAA
*
81210169 TAATAATAAAAATAAATAA
1 TAATAATAATAATAAA-AA
*** *
81210188 TAGGGATAATAGTAAACAA
1 TAATAATAATAATAAA-AA
81210207 -AATAATAATAATAAAA
1 TAATAATAATAATAAAA
81210223 GACAAACAAC
Statistics
Matches: 42, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
17 1 0.02
18 13 0.31
19 28 0.67
ACGTcount: A:0.67, C:0.01, G:0.07, T:0.25
Consensus pattern (18 bp):
TAATAATAATAATAAAAA
Found at i:81210185 original size:16 final size:16
Alignment explanation
Indices: 81210151--81210189 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
81210141 TATATAATGT
*
81210151 AATAATAATAATAGAA
1 AATAATAATAATAAAA
81210167 AATAATAATAA-AAATA
1 AATAATAATAATAAA-A
81210183 AATAATA
1 AATAATA
81210190 GGGATAATAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 2 0.10
16 19 0.90
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.26
Consensus pattern (16 bp):
AATAATAATAATAAAA
Found at i:81218049 original size:28 final size:28
Alignment explanation
Indices: 81218014--81218071 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
81218004 CTATATAGAT
*
81218014 AATAGATTTGAAAGGAAA-TATAAATATA
1 AATAGATTT-AAAAGAAATTATAAATATA
*
81218042 AATAGATTTAAAAGAAATTATATATATA
1 AATAGATTTAAAAGAAATTATAAATATA
81218070 AA
1 AA
81218072 ATAACATGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 7 0.26
28 20 0.74
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.31
Consensus pattern (28 bp):
AATAGATTTAAAAGAAATTATAAATATA
Found at i:81218170 original size:23 final size:26
Alignment explanation
Indices: 81218144--81218198 Score: 62
Period size: 28 Copynumber: 2.2 Consensus size: 26
81218134 ATTTAAATGA
81218144 AATAT-TATACAA-AA-TTTTAAAAC
1 AATATATATACAAGAAGTTTTAAAAC
*
81218167 AATATGATATACAAGAATGTTTTAAAAT
1 AATAT-ATATACAAGAA-GTTTTAAAAC
81218195 AATA
1 AATA
81218199 ATGATATAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 5 0.19
25 7 0.27
26 2 0.08
28 12 0.46
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (26 bp):
AATATATATACAAGAAGTTTTAAAAC
Found at i:81218961 original size:13 final size:13
Alignment explanation
Indices: 81218943--81218969 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81218933 CATGCGAAAG
81218943 AGGAAAACTAAAA
1 AGGAAAACTAAAA
81218956 AGGAAAACTAAAA
1 AGGAAAACTAAAA
81218969 A
1 A
81218970 CATTTAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.07, G:0.15, T:0.07
Consensus pattern (13 bp):
AGGAAAACTAAAA
Found at i:81222049 original size:26 final size:26
Alignment explanation
Indices: 81222020--81222163 Score: 243
Period size: 26 Copynumber: 5.5 Consensus size: 26
81222010 TGGTACAAAT
81222020 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81222046 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81222072 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81222098 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81222124 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81222150 TGATAATGGTTTAG
1 TGATAATGGGTTAG
81222164 ATACCATTGG
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 109 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81222082 original size:52 final size:52
Alignment explanation
Indices: 81222020--81222163 Score: 279
Period size: 52 Copynumber: 2.8 Consensus size: 52
81222010 TGGTACAAAT
81222020 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
81222072 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
*
81222124 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAG
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAG
81222164 ATACCATTGG
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 91 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:81222676 original size:26 final size:26
Alignment explanation
Indices: 81222647--81222754 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
81222637 TGGTACAAAT
81222647 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81222673 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81222699 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81222725 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81222751 TGAT
1 TGAT
81222755 TGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81224393 original size:27 final size:27
Alignment explanation
Indices: 81224353--81224493 Score: 155
Period size: 27 Copynumber: 5.2 Consensus size: 27
81224343 AGGAAACGTC
*
81224353 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
81224380 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
81224406 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* **
81224434 CTGGTGGCTCTACCAC-ATATATCTTTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
81224461 ATGGTGGCTCTGCCATAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
81224488 CTGGTG
1 CTGGTG
81224494 ACTTCGTCAC
Statistics
Matches: 95, Mismatches: 12, Indels: 14
0.79 0.10 0.12
Matches are distributed among these distances:
26 10 0.11
27 81 0.85
28 4 0.04
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:81224432 original size:54 final size:54
Alignment explanation
Indices: 81224350--81224493 Score: 218
Period size: 54 Copynumber: 2.7 Consensus size: 54
81224340 TGGAGGAAAC
*
81224350 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
81224404 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
* ** * *
81224458 TTTATGGTGGCTCTGCCATAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
81224494 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 6 0.07
54 77 0.93
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
Found at i:81235044 original size:3 final size:3
Alignment explanation
Indices: 81235036--81235065 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
81235026 CTTTCAAAAA
*
81235036 ATT ATT ATT ATT AGT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
81235066 TGCAATATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:81242788 original size:25 final size:25
Alignment explanation
Indices: 81242729--81242788 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
81242719 AACCACGCCT
* *
81242729 TTGTGGTGAACTCTCTATAAAGCCC
1 TTGTGGCGAACTCTCTATAAAGCCA
* * * *
81242754 TTATGACGAACTCTCTGTAAAGTCA
1 TTGTGGCGAACTCTCTATAAAGCCA
81242779 TTGTGGCGAA
1 TTGTGGCGAA
81242789 TTCTTTGAAA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (25 bp):
TTGTGGCGAACTCTCTATAAAGCCA
Found at i:81244929 original size:25 final size:25
Alignment explanation
Indices: 81244891--81244943 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
81244881 AACAAGCCAA
*
81244891 TAAATAATTAGAAAATAAGCAAAAAC
1 TAAATAATTAGAAAATAA-AAAAAAC
* *
81244917 TAAA-AATTTGAAACTAAAAAAAAC
1 TAAATAATTAGAAAATAAAAAAAAC
81244941 TAA
1 TAA
81244944 TATTAAACAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 9 0.38
25 11 0.46
26 4 0.17
ACGTcount: A:0.66, C:0.08, G:0.06, T:0.21
Consensus pattern (25 bp):
TAAATAATTAGAAAATAAAAAAAAC
Found at i:81246797 original size:44 final size:43
Alignment explanation
Indices: 81246721--81246891 Score: 146
Period size: 44 Copynumber: 3.9 Consensus size: 43
81246711 AAGAATTGCT
** * *
81246721 GCTTCAATCTGCTCCACTTTATCCTCAAGGAGATTAGACTCGTA
1 GCTTCAATCTGCTCCACTGCAACTTCAAGGAGATTAGACT-GTA
* * ** *
81246765 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATGGGA-TTTA
1 GCTTCAATCTGCTCCACTGCAACTTCAAGGAGATTAGACTGTA
* * * * *
81246807 CTGTCTTCAGTCTGCTCCGCTGTAACTTCAAGGAGATAAGACTGGTG
1 --G-CTTCAATCTGCTCCACTGCAACTTCAAGGAGATTAGACT-GTA
* *
81246854 GCTTCAATCTGTTCCACTGCAACTTCAAGAAGATTAGA
1 GCTTCAATCTGCTCCACTGCAACTTCAAGGAGATTAGA
81246892 TCCGCCATAA
Statistics
Matches: 98, Mismatches: 24, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 62 0.63
45 31 0.32
46 1 0.01
47 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.30
Consensus pattern (43 bp):
GCTTCAATCTGCTCCACTGCAACTTCAAGGAGATTAGACTGTA
Found at i:81247024 original size:44 final size:44
Alignment explanation
Indices: 81246969--81247074 Score: 131
Period size: 44 Copynumber: 2.4 Consensus size: 44
81246959 GTCTGCTCTG
*
81246969 CTGCAATTTCAGGGAGATGAGGCTATTGGCTTCAATCTACTCCA
1 CTGCAACTTCAGGGAGATGAGGCTATTGGCTTCAATCTACTCCA
* * ** *
81247013 CTGCAACTTCAGGGAGATGAGGTTGTTGGCTTTTATCTGCTCCA
1 CTGCAACTTCAGGGAGATGAGGCTATTGGCTTCAATCTACTCCA
* * *
81247057 CCGCAACTTTAGGAAGAT
1 CTGCAACTTCAGGGAGAT
81247075 AAGATCCGCC
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 53 1.00
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.30
Consensus pattern (44 bp):
CTGCAACTTCAGGGAGATGAGGCTATTGGCTTCAATCTACTCCA
Found at i:81247309 original size:45 final size:45
Alignment explanation
Indices: 81247234--81247401 Score: 171
Period size: 45 Copynumber: 3.8 Consensus size: 45
81247224 TTGTAGCTTT
*
81247234 AATCTGTTCCACTGCAA-TGTCAGGGAAATAAGATTCGCTGTCTTC
1 AATCTGCTCCACTGCAACT-TCAGGGAAATAAGATTCGCTGTCTTC
* * * ** * *
81247279 AGTTTGCTCCGCTGCAACTTCAGGGAAATAAGGCT-GGTGGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTGTCTTC
*
81247323 AATCTGCTCCACTGCAACTTCA-GGAAGATAAGATTCGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAA-ATAAGATTCGCTGTCTTC
* * * * *
81247368 GATCTGCTCCATTGCAGCTTCAAGGAGATAAGAT
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGAT
81247402 CTACAACTTC
Statistics
Matches: 99, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
43 4 0.04
44 32 0.32
45 59 0.60
46 4 0.04
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTGTCTTC
Found at i:81247389 original size:89 final size:89
Alignment explanation
Indices: 81247229--81247399 Score: 213
Period size: 89 Copynumber: 1.9 Consensus size: 89
81247219 ATAATTTGTA
* * * * *
81247229 GCTTTAATCTGTTCCACTGCAATGTCAGGGAAATAAGATTCGCTGTCTTCAGTTTGCTCCGCTGC
1 GCTTCAATCTGCTCCACTGCAATGTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGC
*
81247294 AACTTCAGGGAAATAAGGCTGGTG
66 AACTTCAAGGAAATAAGGCTGGTG
*
81247318 GCTTCAATCTGCTCCACTGCAACT-TCA-GGAAGATAAGATTCGCTATCTTC-GATCTGCTCCAT
1 GCTTCAATCTGCTCCACTGCAA-TGTCAGGGAA-ATAAGATTCGCTATCTTCAG-TCTGCTCCAC
* *
81247380 TGCAGCTTCAAGGAGATAAG
63 TGCAACTTCAAGGAAATAAG
81247400 ATCTACAACT
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
88 5 0.07
89 64 0.91
90 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.29
Consensus pattern (89 bp):
GCTTCAATCTGCTCCACTGCAATGTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGC
AACTTCAAGGAAATAAGGCTGGTG
Found at i:81248042 original size:65 final size:65
Alignment explanation
Indices: 81247932--81248056 Score: 160
Period size: 65 Copynumber: 1.9 Consensus size: 65
81247922 AATGATGGAC
* * * * * * * *
81247932 AAGAAGGAAATTGATTGAGAGCATAGCTCGAGACGAATAAGTTAATCAAAGATGACAAACATAAT
1 AAGAAAGAAACTGATTGAGAGCATAGCTCGAAACGAACAAATTAATAAAAAATAACAAACATAAT
* *
81247997 AAGAAAGAAACTGATTGAGAGCATAGCTTGAAATGAACAAATTAATAAAAAATAACAAAC
1 AAGAAAGAAACTGATTGAGAGCATAGCTCGAAACGAACAAATTAATAAAAAATAACAAAC
81248057 TTTGTTAAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
65 50 1.00
ACGTcount: A:0.52, C:0.10, G:0.18, T:0.19
Consensus pattern (65 bp):
AAGAAAGAAACTGATTGAGAGCATAGCTCGAAACGAACAAATTAATAAAAAATAACAAACATAAT
Done.