Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 245 of 344
Found at i:81248376 original size:8 final size:8
Alignment explanation
Indices: 81248365--81248435 Score: 56
Period size: 8 Copynumber: 8.6 Consensus size: 8
81248355 TCTTTTTCCT
81248365 TTTTTTTG
1 TTTTTTTG
81248373 TTTTTCTT-
1 TTTTT-TTG
*
81248381 TTTTTCT-
1 TTTTTTTG
* *
81248388 TCTTTTTC
1 TTTTTTTG
*
81248396 TTCTTTTG
1 TTTTTTTG
81248404 TTTTTTTG
1 TTTTTTTG
81248412 TTTTTCTTTTG
1 --TTT-TTTTG
81248423 TTTTTTTG
1 TTTTTTTG
81248431 TTTTT
1 TTTTT
81248436 CTTTTGTTAG
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
7 6 0.12
8 32 0.63
9 5 0.10
10 3 0.06
11 5 0.10
ACGTcount: A:0.00, C:0.08, G:0.07, T:0.85
Consensus pattern (8 bp):
TTTTTTTG
Found at i:81248393 original size:39 final size:40
Alignment explanation
Indices: 81248350--81248440 Score: 116
Period size: 39 Copynumber: 2.3 Consensus size: 40
81248340 CTGGCCTTTC
81248350 CTTTTTCTTTTTCCT-TTTTTTTGTTTTTC-TTT-TTTTCTT
1 CTTTTTCTTTTT--TGTTTTTTTGTTTTTCTTTTGTTTTCTT
*
81248389 CTTTTTCTTCTTTTGTTTTTTTGTTTTTCTTTTGTTTTTTT
1 CTTTTTCTT-TTTTGTTTTTTTGTTTTTCTTTTGTTTTCTT
*
81248430 GTTTTTCTTTT
1 CTTTTTCTTTT
81248441 GTTAGTGAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
38 1 0.02
39 23 0.50
40 8 0.17
41 14 0.30
ACGTcount: A:0.00, C:0.12, G:0.05, T:0.82
Consensus pattern (40 bp):
CTTTTTCTTTTTTGTTTTTTTGTTTTTCTTTTGTTTTCTT
Found at i:81248418 original size:19 final size:19
Alignment explanation
Indices: 81248365--81248443 Score: 117
Period size: 19 Copynumber: 4.1 Consensus size: 19
81248355 TCTTTTTCCT
81248365 TTTTTTTGTTTTTCTTTT-
1 TTTTTTTGTTTTTCTTTTG
81248383 TTTCTTCTT-TTTCTTCTTTTG
1 TTT-TT-TTGTTT-TTCTTTTG
81248404 TTTTTTTGTTTTTCTTTTG
1 TTTTTTTGTTTTTCTTTTG
81248423 TTTTTTTGTTTTTCTTTTG
1 TTTTTTTGTTTTTCTTTTG
81248442 TT
1 TT
81248444 AGTGAAGTAT
Statistics
Matches: 56, Mismatches: 0, Indels: 9
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.05
19 36 0.64
20 14 0.25
21 3 0.05
ACGTcount: A:0.00, C:0.09, G:0.08, T:0.84
Consensus pattern (19 bp):
TTTTTTTGTTTTTCTTTTG
Found at i:81260219 original size:10 final size:11
Alignment explanation
Indices: 81260200--81260232 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
81260190 TTGATATGTT
81260200 AATGAAGAGAA
1 AATGAAGAGAA
81260211 AAT-AAGAGAA
1 AATGAAGAGAA
*
81260221 AGTGAAGAGAA
1 AATGAAGAGAA
81260232 A
1 A
81260233 TAGTGTAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (11 bp):
AATGAAGAGAA
Found at i:81261935 original size:46 final size:46
Alignment explanation
Indices: 81261887--81262108 Score: 320
Period size: 46 Copynumber: 4.8 Consensus size: 46
81261877 GCTCTCTGAT
** * *
81261887 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
81261933 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
81261979 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
81262025 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
81262071 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGC
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGC
81262109 GTCATGTCAA
Statistics
Matches: 159, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 158 0.99
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.19
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:81263005 original size:47 final size:47
Alignment explanation
Indices: 81262931--81263062 Score: 178
Period size: 46 Copynumber: 2.8 Consensus size: 47
81262921 TGTTACAGAG
*
81262931 GCATCCGAACTCGTTGAGTTGCATTCCGAGTTCACCTATGGATGC-AA
1 GCATCCGAACTCGTTGAGTTGCGTTCCGAGTTCA-CTATGGATGCGAA
* * *
81262978 GCATCCAAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATGCGAA
1 GCATCCGAACTCGTTGAGTTGCGTTCCGAGTTCACTATGGATGCGAA
* * *
81263025 -CACCCGAGCTCGTTGAGTTGCGTTCCGAGTTCATTATG
1 GCATCCGAACTCGTTGAGTTGCGTTCCGAGTTCACTATG
81263063 AGTGAGATTA
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
46 43 0.57
47 33 0.43
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.30
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGCGTTCCGAGTTCACTATGGATGCGAA
Found at i:81265880 original size:25 final size:25
Alignment explanation
Indices: 81265850--81265897 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
81265840 TAAATTCTTA
81265850 ATTTG-ATTTATTATTTTAAAAATAT
1 ATTTGAATTTATT-TTTTAAAAATAT
* *
81265875 ATTTGAATTTGTTTTTTGAAAAT
1 ATTTGAATTTATTTTTTAAAAAT
81265898 TTCATATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 14 0.70
26 6 0.30
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.56
Consensus pattern (25 bp):
ATTTGAATTTATTTTTTAAAAATAT
Found at i:81268584 original size:3 final size:3
Alignment explanation
Indices: 81268576--81268610 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
81268566 CTATCAAAAA
* *
81268576 ATT ATT ATT ATT ATT CTT ATT ATT GTT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
81268611 AAAATTTATG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:81273310 original size:13 final size:13
Alignment explanation
Indices: 81273292--81273318 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81273282 GAACTAAAGA
81273292 TTCACCCCTCAAT
1 TTCACCCCTCAAT
81273305 TTCACCCCTCAAT
1 TTCACCCCTCAAT
81273318 T
1 T
81273319 GTTTATCTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.44, G:0.00, T:0.33
Consensus pattern (13 bp):
TTCACCCCTCAAT
Found at i:81279870 original size:44 final size:44
Alignment explanation
Indices: 81279802--81279890 Score: 135
Period size: 44 Copynumber: 2.0 Consensus size: 44
81279792 ATTACATGTA
* * *
81279802 TCGCATCCATTATGAGCTCGGACCAACTCAACGAGCT-GAGATGC
1 TCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCG-GATGC
81279846 TCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCGGATGC
81279890 T
1 T
81279891 TCACATATAC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 40 0.98
45 1 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (44 bp):
TCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCGGATGC
Found at i:81281767 original size:18 final size:17
Alignment explanation
Indices: 81281744--81281787 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
81281734 CAAAATTTTG
81281744 GGCCCACATGCCCGTGTT
1 GGCCCACATGCCCGTG-T
* * *
81281762 GGCCCATACGCTCGTGT
1 GGCCCACATGCCCGTGT
81281779 GGCCCACAT
1 GGCCCACAT
81281788 CGCCTAGACT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.14, C:0.39, G:0.27, T:0.20
Consensus pattern (17 bp):
GGCCCACATGCCCGTGT
Found at i:81283015 original size:23 final size:25
Alignment explanation
Indices: 81282974--81283025 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 25
81282964 TATCATCTTA
*
81282974 AAAAAATCTACCATAATTTT-TTTT
1 AAAAAATCTACCATAATTTTCTTCT
* *
81282998 AAAAAA-CTATCATTATTTTCTTCT
1 AAAAAATCTACCATAATTTTCTTCT
81283022 AAAA
1 AAAA
81283026 GATACTACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 11 0.46
24 13 0.54
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.42
Consensus pattern (25 bp):
AAAAAATCTACCATAATTTTCTTCT
Found at i:81283426 original size:16 final size:16
Alignment explanation
Indices: 81283405--81283440 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
81283395 ATTTTTTTTG
81283405 AAATTTTAAATTTAAA
1 AAATTTTAAATTTAAA
81283421 AAATTTTAAATTTAAA
1 AAATTTTAAATTTAAA
81283437 AAAT
1 AAAT
81283441 AATTAATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AAATTTTAAATTTAAA
Found at i:81283448 original size:16 final size:16
Alignment explanation
Indices: 81283405--81283446 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
81283395 ATTTTTTTTG
*
81283405 AAATTTTAAATTTAAA
1 AAATATTAAATTTAAA
*
81283421 AAATTTTAAATTTAAA
1 AAATATTAAATTTAAA
81283437 AAATAATTAA
1 AAAT-ATTAA
81283447 TTGCTGACGC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 20 0.83
17 4 0.17
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATATTAAATTTAAA
Found at i:81287011 original size:131 final size:130
Alignment explanation
Indices: 81286765--81287154 Score: 440
Period size: 131 Copynumber: 3.0 Consensus size: 130
81286755 TTTATAATCA
* * *
81286765 TTTTAAAAATTCTTCAAAACGAAGACGAAATTTGATGTTTGACAATTCGCAGAATCGTGCCCTAA
1 TTTT-AAAATTCTTCAAAACGAAGGCGAGATTTGATATTTG-CAATTCGCAGAATCGTGCCCTAA
* * * * *
81286830 CGTTTTGGGTTGCAATTTCGCATTTACTCAAAATAATCGAATATCGCTTCAAAATTTCACTCATG
64 CGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCA-G
*
81286895 -TC
128 CCC
* * * *
81286897 TTTTAAAATTCTTCGAAACGAAGGCGAGATTCGAAATTTAGCAATTCGCAGAATTGTGCCCTAAC
1 TTTTAAAATTCTTCAAAACGAAGGCGAGATTTGATATTT-GCAATTCGCAGAATCGTGCCCTAAC
* * * * *
81286962 GTGTTGGGTTGCAATTTCTTGTTTGCTCTAAATAATCGAGTATCTCTTCAAAATTTTACTCAGCC
65 GTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCAGCC
81287027 C
130 C
** * * * * * **
81287028 TTTTAAGAACCCTTTAAAACAAAGGCAAGGTTTGATATTTGGTAATTCGTGGAATCGTGCCCTAA
1 TTTTAA-AATTCTTCAAAACGAAGGCGAGATTTGATATTT-GCAATTCGCAGAATCGTGCCCTAA
* * * *
81287093 CGTGTTGGGTTGCGATTTCTCGTTTGCTCGAAATAATCAAATAACCCTTCAAAATTTCACTC
64 CGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTC
81287155 GTATCCTTTA
Statistics
Matches: 216, Mismatches: 39, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
130 1 0.00
131 112 0.52
132 103 0.48
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (130 bp):
TTTTAAAATTCTTCAAAACGAAGGCGAGATTTGATATTTGCAATTCGCAGAATCGTGCCCTAACG
TGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCAGCCC
Found at i:81287111 original size:132 final size:131
Alignment explanation
Indices: 81286807--81287154 Score: 410
Period size: 132 Copynumber: 2.6 Consensus size: 131
81286797 TGATGTTTGA
* * * *
81286807 CAATTCGCAGAATCGTGCCCTAACGTTTTGGGTTGCAATTTCGCATTTACTCAAAATAATCGAAT
1 CAATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAAT
* * ** * * *
81286872 ATCGCTTCAAAATTTCACTCATGTCTTTTAAAATTCTTCGAAACGAAGGCGAGATTCGAAATTTA
66 ATCCCTTCAAAATTTCACTCATGCCTTTTAAAACCCTTCAAAACAAAGGCAAGATTCGAAATTTA
81286937 G
131 G
* * * *
81286938 CAATTCGCAGAATTGTGCCCTAACGTGTTGGGTTGCAATTTCTTGTTTGCTCTAAATAATCGAGT
1 CAATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAAT
* * * * * *
81287003 ATCTCTTCAAAATTTTACTCA-GCCCTTTTAAGAACCCTTTAAAACAAAGGCAAGGTTTGATATT
66 ATCCCTTCAAAATTTCACTCATG-CCTTTTAA-AACCCTTCAAAACAAAGGCAAGATTCGAAATT
*
81287067 TGG
129 TAG
* ** * * *
81287070 TAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTGCGATTTCTCGTTTGCTCGAAATAATCAAAT
1 CAATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAAT
*
81287135 AACCCTTCAAAATTTCACTC
66 ATCCCTTCAAAATTTCACTC
81287155 GTATCCTTTA
Statistics
Matches: 182, Mismatches: 33, Indels: 3
0.83 0.15 0.01
Matches are distributed among these distances:
130 1 0.01
131 83 0.46
132 98 0.54
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (131 bp):
CAATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAAT
ATCCCTTCAAAATTTCACTCATGCCTTTTAAAACCCTTCAAAACAAAGGCAAGATTCGAAATTTA
G
Found at i:81298874 original size:44 final size:44
Alignment explanation
Indices: 81298809--81299298 Score: 589
Period size: 44 Copynumber: 11.1 Consensus size: 44
81298799 GCAAATCCTG
* * *
81298809 CAGATTTGGCATCCCTATATTGGCGGAGAGCAGATCGAAGATAT
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAT
* * *
81298853 CAGATTTGACGTCTTTGTATTGGCGGAGAGCAGATCAAAGATAGT
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATA-T
* *
81298898 -AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAT
** *
81298941 CAGATTTGGTGTCTTTGTATTGGCGGAGAGCAGATCAAAGATAGT
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATA-T
*
81298986 -AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAG
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAT
* * *
81299029 CAGATTTGGCGTCTCTGTATTGGCGAAGAGCAGATTAAAGATAGT
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATA-T
* * * *
81299074 -AGATTTGGCATCTCTGTATTGGCAGAGAACAGATCGAAGATAG
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAT
* * * *
81299117 CAGATTTAG-AGTCTCTGCATCGGCGGAGAGCAGATCAAAGATAG
1 CAGATTTGGCA-TCTCTGTATTGGCGGAGAGCAGATCAAAGATAT
* * *
81299161 CAGATTTGGCGTCACTGTATTGGCGGAGAGTAGATCAAAGATAGT
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATA-T
*
81299206 -AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGT
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATA-T
* ** *
81299250 -AGATTTGGCATCTCTGTACTGGTAGAGAGCAGATCGAAA-ATAA
1 CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATC-AAAGATAT
81299293 CAGATT
1 CAGATT
81299299 GGTTCTTGAG
Statistics
Matches: 382, Mismatches: 53, Indels: 22
0.84 0.12 0.05
Matches are distributed among these distances:
43 1 0.00
44 378 0.99
45 3 0.01
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (44 bp):
CAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAT
Found at i:81298959 original size:88 final size:88
Alignment explanation
Indices: 81298810--81299298 Score: 717
Period size: 88 Copynumber: 5.6 Consensus size: 88
81298800 CAAATCCTGC
* * * * *
81298810 AGATTTGGCATCCCTATATTGGCGGAGAGCAGATCGAAGATATCAGATTTGACGTCTTTGTATTG
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
81298875 GCGGAGAGCAGATCAAAGATAGT
66 GCGGAGAGCAGATCAAAGATAGT
* *
81298898 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGTGTCTTTGTATTG
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
81298963 GCGGAGAGCAGATCAAAGATAGT
66 GCGGAGAGCAGATCAAAGATAGT
*
81298986 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTG
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
* *
81299051 GCGAAGAGCAGATTAAAGATAGT
66 GCGGAGAGCAGATCAAAGATAGT
* * * * * *
81299074 AGATTTGGCATCTCTGTATTGGCAGAGAACAGATCGAAGATAGCAGATTTAGAGTCTCTGCATCG
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
*
81299139 GCGGAGAGCAGATCAAAGATAGC
66 GCGGAGAGCAGATCAAAGATAGT
* * * * * *
81299162 AGATTTGGCGTCACTGTATTGGCGGAGAGTAGATCAAAGATAGTAGATTTGGCATCTCTGTATTG
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
*
81299227 GCGGAGAGCAGATCGAAGATAGT
66 GCGGAGAGCAGATCAAAGATAGT
* ** * *
81299250 AGATTTGGCATCTCTGTACTGGTAGAGAGCAGATCGAAAATAACAGATT
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATT
81299299 GGTTCTTGAG
Statistics
Matches: 357, Mismatches: 44, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 357 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (88 bp):
AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
GCGGAGAGCAGATCAAAGATAGT
Found at i:81299045 original size:132 final size:132
Alignment explanation
Indices: 81298810--81299298 Score: 687
Period size: 132 Copynumber: 3.7 Consensus size: 132
81298800 CAAATCCTGC
* * * * *
81298810 AGATTTGGCATCCCTATATTGGCGGAGAGCAGATCGAAGATA-TCAGATTTGACGTCTTTGTATT
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGT-AGATTTGGCATCTCTGTATT
* * *
81298874 GGCGGAGAGCAGATCAAAGATAGTAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGAT
65 GGCGGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
*
81298939 AGC
130 AGT
** * *
81298942 AGATTTGGTGTCTTTGTATTGGCGGAGAGCAGATCAAAGATAGTAGATTTGGCATCTCTGTATTG
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGTAGATTTGGCATCTCTGTATTG
* *
81299007 GCGGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGGCGAAGAGCAGATTAAAGATA
66 GCGGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGATA
81299072 GT
131 GT
* * * * * *
81299074 AGATTTGGCATCTCTGTATTGGCAGAGAACAGATCGAAGATAGCAGATTTAG-AGTCTCTGCATC
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGTAGATTTGGCA-TCTCTGTATT
* *
81299138 GGCGGAGAGCAGATCAAAGATAGCAGATTTGGCGTCACTGTATTGGCGGAGAGTAGATCAAAGAT
65 GGCGGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
81299203 AGT
130 AGT
*
81299206 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGTAGATTTGGCATCTCTGTACTG
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGTAGATTTGGCATCTCTGTATTG
** *
81299271 GTAGAGAGCAGATCGAAA-ATAACAGATT
66 GCGGAGAGCAGATC-AAAGATAGCAGATT
81299299 GGTTCTTGAG
Statistics
Matches: 314, Mismatches: 39, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
131 1 0.00
132 308 0.98
133 5 0.02
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (132 bp):
AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGTAGATTTGGCATCTCTGTATTG
GCGGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGATA
GT
Found at i:81302321 original size:131 final size:130
Alignment explanation
Indices: 81302080--81302464 Score: 455
Period size: 131 Copynumber: 2.9 Consensus size: 130
81302070 TCATTCATTC
* * *
81302080 AAAATTCTTCAAAACGAAGACGAGATTTGATGTTTGACAATTCGCGGAATCGTGCCCTAACGTTT
1 AAAATTCTTCAAAACGAAGGCGAGATTTGATATTTG-CAATTCGCGGAATCGTGCCCTAACGTGT
*** * * **
81302145 TGGGTTGCAATTTCGCATTTGCTCAAAATAATCGAATATCGCTTCAAAACTTCACTCATGTCTTT
65 TGGGTTGCAATTTCTTGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATCCCTTT
81302210 T
130 T
* * * * *
81302211 AAAATTCTTCGAAATGAAGGCGAGATTCGATATTTAGCAATTCGCGAAATTGTGCCCTAACGTGT
1 AAAATTCTTCAAAACGAAGGCGAGATTTGATATTT-GCAATTCGCGGAATCGTGCCCTAACGTGT
* * *
81302276 TGGGTTGCAATTTCTTGTTTGCTCTAAATAATCGAGTATCCCTTCAAAATTTTACTCATCCCTTT
65 TGGGTTGCAATTTCTTGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATCCCTTT
81302341 T
130 T
** * * * * * *
81302342 AAGAACCCTTTAAAACAAAGGCAAGGTTTGATATTTGGTAATTCGTGGAATCGTGCCCTAACGTG
1 AA-AATTCTTCAAAACGAAGGCGAGATTTGATATTT-GCAATTCGCGGAATCGTGCCCTAACGTG
** * * *
81302407 TTGGGTTGTGATTTCTTGTTTGCTCGAAATAATCAAATAACCCTTCAAAATTTCACTC
64 TTGGGTTGCAATTTCTTGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTC
81302465 GTATCCTTTA
Statistics
Matches: 213, Mismatches: 39, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
131 113 0.53
132 100 0.47
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (130 bp):
AAAATTCTTCAAAACGAAGGCGAGATTTGATATTTGCAATTCGCGGAATCGTGCCCTAACGTGTT
GGGTTGCAATTTCTTGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATCCCTTTT
Found at i:81312530 original size:18 final size:18
Alignment explanation
Indices: 81312494--81312531 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
81312484 TAAATGTTAC
*
81312494 AATAATAACAAAAGTAAT
1 AATAATAAAAAAAGTAAT
81312512 AATAATAAAAGAAAG-AAT
1 AATAATAAAA-AAAGTAAT
81312530 AA
1 AA
81312532 AGAAAAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.18
Consensus pattern (18 bp):
AATAATAAAAAAAGTAAT
Found at i:81315044 original size:14 final size:14
Alignment explanation
Indices: 81315027--81315055 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
81315017 TGTATTAAGA
81315027 TCATTGTATATAAT
1 TCATTGTATATAAT
81315041 TCATTGTATATAAT
1 TCATTGTATATAAT
81315055 T
1 T
81315056 GTAAAAGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (14 bp):
TCATTGTATATAAT
Found at i:81315865 original size:35 final size:35
Alignment explanation
Indices: 81315826--81315983 Score: 151
Period size: 35 Copynumber: 4.5 Consensus size: 35
81315816 TGTTGACACA
** *
81315826 TAGGGTTCACATAGTATATAGACTCGCATATTAAC
1 TAGGGTTCACATAACATATAGACTCGCATAGTAAC
* * *
81315861 TAGGGTTCACATAACATATAGGCTCGCATGGTAGC
1 TAGGGTTCACATAACATATAGACTCGCATAGTAAC
* * *
81315896 TAGGGTTCACATAACAGT-TAGGCTTGCAGT-GTACC
1 TAGGGTTCACATAACA-TATAGACTCGCA-TAGTAAC
** * *
81315931 TAGGGTTCACATAACATATAGGTTCCCATA-CAACC
1 TAGGGTTCACATAACATATAGACTCGCATAGTAA-C
81315966 TAGGGTTCACATAACATA
1 TAGGGTTCACATAACATA
81315984 GTTTGCATAT
Statistics
Matches: 105, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
34 3 0.03
35 100 0.95
36 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (35 bp):
TAGGGTTCACATAACATATAGACTCGCATAGTAAC
Found at i:81315978 original size:18 final size:19
Alignment explanation
Indices: 81315927--81315983 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 19
81315917 GCTTGCAGTG
81315927 TACCTAGGGTTCACATAACA
1 TACCTAGGGTTCACAT-ACA
*
81315947 TA--TA-GGTTCCCATACA
1 TACCTAGGGTTCACATACA
81315963 -ACCTAGGGTTCACATAACA
1 TACCTAGGGTTCACAT-ACA
81315982 TA
1 TA
81315984 GTTTGCATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
15 1 0.03
16 3 0.10
17 10 0.33
18 10 0.33
19 3 0.10
20 3 0.10
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (19 bp):
TACCTAGGGTTCACATACA
Found at i:81317603 original size:21 final size:21
Alignment explanation
Indices: 81317579--81317619 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
81317569 TGCAATCGAC
*
81317579 AGGCTATGTCACAAGACATGT
1 AGGCCATGTCACAAGACATGT
* *
81317600 AGGCCATGTCGCGAGACATG
1 AGGCCATGTCACAAGACATG
81317620 CTAGCTAATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
AGGCCATGTCACAAGACATGT
Found at i:81319932 original size:27 final size:25
Alignment explanation
Indices: 81319883--81319954 Score: 90
Period size: 27 Copynumber: 2.8 Consensus size: 25
81319873 AGCTAATATT
* *
81319883 GGGAAGCTCCATAGAGCCATTAACC
1 GGGAAGCTCTAAAGAGCCATTAACC
* *
81319908 GGGAAGCTCATGAAAGAGCCTTTAATC
1 GGGAAGCTC-T-AAAGAGCCATTAACC
81319935 GGGAAGCTCTAAAGAGCCAT
1 GGGAAGCTCTAAAGAGCCAT
81319955 ATATCGGGAC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 18 0.45
26 1 0.03
27 21 0.52
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.18
Consensus pattern (25 bp):
GGGAAGCTCTAAAGAGCCATTAACC
Found at i:81319960 original size:25 final size:25
Alignment explanation
Indices: 81319814--81319976 Score: 81
Period size: 24 Copynumber: 6.6 Consensus size: 25
81319804 ATGTAACGGA
* * *
81319814 AAGCTCCAGAGAGCCAT-TAACGGG
1 AAGCTCTAAAGAGCCATATATCGGG
* * *
81319838 AAG-TTTATATGAGCCA-ATATCAGG
1 AAGCTCTA-AAGAGCCATATATCGGG
* * *
81319862 AAGTTC-AAGAGAGCTA-ATATTGGG
1 AAGCTCTAA-AGAGCCATATATCGGG
* * *
81319886 AAGCTCCATAGAGCCAT-TAACCGGG
1 AAGCTCTAAAGAGCCATAT-ATCGGG
*
81319911 AAGCTCATGAAAGAGCC-TTTAATCGGG
1 AAGCTC-T-AAAGAGCCATAT-ATCGGG
81319938 AAGCTCTAAAGAGCCATATATCGGG
1 AAGCTCTAAAGAGCCATATATCGGG
*
81319963 ACGCTC-ATAAGAGC
1 AAGCTCTA-AAGAGC
81319977 TGCAGTGTGT
Statistics
Matches: 106, Mismatches: 21, Indels: 23
0.71 0.14 0.15
Matches are distributed among these distances:
23 3 0.03
24 42 0.40
25 37 0.35
26 4 0.04
27 20 0.19
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (25 bp):
AAGCTCTAAAGAGCCATATATCGGG
Found at i:81334447 original size:520 final size:520
Alignment explanation
Indices: 81333466--81334506 Score: 2073
Period size: 520 Copynumber: 2.0 Consensus size: 520
81333456 CCGTGTGCGA
81333466 TTACTCCAGCCCGTTGTCAAGGTTGTTGAATAGGCACGAGCGTGTAGTCTACTCGTGTAAGTCAT
1 TTACTCCAGCCCGTTGTCAAGGTTGTTGAATAGGCACGAGCGTGTAGTCTACTCGTGTAAGTCAT
81333531 GCTTCGATCCTGCCAAACAGACACGACCGTGGGACACGTCCGTGTGAGGAAGCCCAGGCCATGTT
66 GCTTCGATCCTGCCAAACAGACACGACCGTGGGACACGTCCGTGTGAGGAAGCCCAGGCCATGTT
*
81333596 GTTTTCCCATGTGGGTCCATTTTCTCTGTTTTCGGCCTGTTTCTCGCTCTTTTTACTCTCCTATG
131 GTTTTCCCATGTGGGTCCATTTTCTCTATTTTCGGCCTGTTTCTCGCTCTTTTTACTCTCCTATG
81333661 CTCACCTAAGTATAAAACATGAAATTAAAGAATTAGGAGCATCTAATTCACCAAATATAAGGAGA
196 CTCACCTAAGTATAAAACATGAAATTAAAGAATTAGGAGCATCTAATTCACCAAATATAAGGAGA
81333726 AACCATCCATAAATGTGCTAAGCATGGGATAAAAACATGTATAAATTACGGTTTATCAATAATTA
261 AACCATCCATAAATGTGCTAAGCATGGGATAAAAACATGTATAAATTACGGTTTATCAATAATTA
81333791 TTTATATGCAACTTATTAAGCTTTATGCTTACTCCCTCTCCTTTCCTTTTTCTTATGGTGCCGCC
326 TTTATATGCAACTTATTAAGCTTTATGCTTACTCCCTCTCCTTTCCTTTTTCTTATGGTGCCGCC
81333856 TATCTAGCTCAAGGATCAACGGAAGTCAGAGATATCGATCACACTATCAATCGAAGCATTCGATA
391 TATCTAGCTCAAGGATCAACGGAAGTCAGAGATATCGATCACACTATCAATCGAAGCATTCGATA
81333921 TAGTTTGATTCATATTTTTGAATATGGCATGTATAGGAAACTAGACTTGTGTTTTGTGTTGTTAT
456 TAGTTTGATTCATATTTTTGAATATGGCATGTATAGGAAACTAGACTTGTGTTTTGTGTTGTTAT
81333986 TTACTCCAGCCCGTTGTCAAGGTTGTTGAATAGGCACGAGCGTGTAGTCTACTCGTGTAAGTCAT
1 TTACTCCAGCCCGTTGTCAAGGTTGTTGAATAGGCACGAGCGTGTAGTCTACTCGTGTAAGTCAT
81334051 GCTTCGATCCTGCCAAACAGACACGACCGTGGGACACGTCCGTGTGAGGAAGCCCAGGCCATGTT
66 GCTTCGATCCTGCCAAACAGACACGACCGTGGGACACGTCCGTGTGAGGAAGCCCAGGCCATGTT
81334116 GTTTTCCCATGTGGGTCCATTTTCTCTATTTTCGGCCTGTTTCTCGCTCTTTTTACTCTCCTATG
131 GTTTTCCCATGTGGGTCCATTTTCTCTATTTTCGGCCTGTTTCTCGCTCTTTTTACTCTCCTATG
81334181 CTCACCTAAGTATAAAACATGAAATTAAAGAATTAGGAGCATCTAATTCACCAAATATAAGGAGA
196 CTCACCTAAGTATAAAACATGAAATTAAAGAATTAGGAGCATCTAATTCACCAAATATAAGGAGA
81334246 AACCATCCATAAATGTGCTAAGCATGGGATAAAAACATGTATAAATTACGGTTTATCAATAATTA
261 AACCATCCATAAATGTGCTAAGCATGGGATAAAAACATGTATAAATTACGGTTTATCAATAATTA
81334311 TTTATATGCAACTTATTAAGCTTTATGCTTACTCCCTCTCCTTTCCTTTTTCTTATGGTGCCGCC
326 TTTATATGCAACTTATTAAGCTTTATGCTTACTCCCTCTCCTTTCCTTTTTCTTATGGTGCCGCC
81334376 TATCTAGCTCAAGGATCAACGGAAGTCAGAGATATCGATCACACTATCAATCGAAGCATTCGATA
391 TATCTAGCTCAAGGATCAACGGAAGTCAGAGATATCGATCACACTATCAATCGAAGCATTCGATA
81334441 TAGTTTGATTCATATTTTTGAATATGGCATGTATAGGAAACTAGACTTGTGTTTTGTGTTGTTAT
456 TAGTTTGATTCATATTTTTGAATATGGCATGTATAGGAAACTAGACTTGTGTTTTGTGTTGTTAT
81334506 T
1 T
81334507 AATTTCGCCA
Statistics
Matches: 520, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
520 520 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (520 bp):
TTACTCCAGCCCGTTGTCAAGGTTGTTGAATAGGCACGAGCGTGTAGTCTACTCGTGTAAGTCAT
GCTTCGATCCTGCCAAACAGACACGACCGTGGGACACGTCCGTGTGAGGAAGCCCAGGCCATGTT
GTTTTCCCATGTGGGTCCATTTTCTCTATTTTCGGCCTGTTTCTCGCTCTTTTTACTCTCCTATG
CTCACCTAAGTATAAAACATGAAATTAAAGAATTAGGAGCATCTAATTCACCAAATATAAGGAGA
AACCATCCATAAATGTGCTAAGCATGGGATAAAAACATGTATAAATTACGGTTTATCAATAATTA
TTTATATGCAACTTATTAAGCTTTATGCTTACTCCCTCTCCTTTCCTTTTTCTTATGGTGCCGCC
TATCTAGCTCAAGGATCAACGGAAGTCAGAGATATCGATCACACTATCAATCGAAGCATTCGATA
TAGTTTGATTCATATTTTTGAATATGGCATGTATAGGAAACTAGACTTGTGTTTTGTGTTGTTAT
Found at i:81337402 original size:21 final size:20
Alignment explanation
Indices: 81337376--81337417 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
81337366 CTAAATTTTC
81337376 ACTTATAATATACATATGATT
1 ACTTATAATATACATAT-ATT
* *
81337397 ACTTATTATATTCATATATT
1 ACTTATAATATACATATATT
81337417 A
1 A
81337418 TCACTTATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.40, C:0.10, G:0.02, T:0.48
Consensus pattern (20 bp):
ACTTATAATATACATATATT
Found at i:81338303 original size:21 final size:21
Alignment explanation
Indices: 81338279--81338322 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
81338269 AAACGAGCAA
81338279 GGGCGGAATGGCACAATGGGC
1 GGGCGGAATGGCACAATGGGC
*
81338300 GGGCGGAATGGCACGATGGGC
1 GGGCGGAATGGCACAATGGGC
81338321 GG
1 GG
81338323 TGGACCAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.18, G:0.52, T:0.09
Consensus pattern (21 bp):
GGGCGGAATGGCACAATGGGC
Found at i:81342847 original size:43 final size:43
Alignment explanation
Indices: 81342797--81342919 Score: 171
Period size: 43 Copynumber: 2.9 Consensus size: 43
81342787 GAGGTGTGAT
*
81342797 TTCGTGTAAGACCATGTCTAGGACATTGGCATCGATATGA-GA
1 TTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGATGA
81342839 TTACGTGTAAGACCATGTCTGGGACATTGGCATC-ATAT-ATGA
1 TT-CGTGTAAGACCATGTCTGGGACATTGGCATCGATATGATGA
* * **
81342881 TTCGTGTAAGACCCTGTATGGGACAGAGGCATCGATATG
1 TTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATG
81342920 TGAAAACATG
Statistics
Matches: 72, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
41 28 0.39
42 14 0.19
43 30 0.42
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (43 bp):
TTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGATGA
Found at i:81350180 original size:10 final size:10
Alignment explanation
Indices: 81350165--81350189 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
81350155 AAATAAGTTA
81350165 AATTTGTATT
1 AATTTGTATT
81350175 AATTTGTATT
1 AATTTGTATT
81350185 AATTT
1 AATTT
81350190 AGATCAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (10 bp):
AATTTGTATT
Found at i:81350548 original size:43 final size:43
Alignment explanation
Indices: 81350495--81350578 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
81350485 TCTGAAGTGT
* * **
81350495 GATTTCGTGTAAGACCATGTCTAGGACATTGGCATCGATATAA
1 GATTACGTGTAAGACCACGTCTAGGACAGAGGCATCGATATAA
*
81350538 GATTACGTGTAAGACCACGTCTGGGACAGAGGCATCGATAT
1 GATTACGTGTAAGACCACGTCTAGGACAGAGGCATCGATAT
81350579 GTGAAAACAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (43 bp):
GATTACGTGTAAGACCACGTCTAGGACAGAGGCATCGATATAA
Found at i:81350592 original size:43 final size:43
Alignment explanation
Indices: 81350502--81350597 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
81350492 TGTGATTTCG
* ** ** *
81350502 TGTAAGACCATGTCTAGGACATTGGCATCGATATAAGATTACG
1 TGTAAGACCACGTCTAGGACAGAGGCATCGATATAAGAAAACA
* **
81350545 TGTAAGACCACGTCTGGGACAGAGGCATCGATATGTGAAAACA
1 TGTAAGACCACGTCTAGGACAGAGGCATCGATATAAGAAAACA
81350588 TGTAAGACCA
1 TGTAAGACCA
81350598 TATCCGGGAT
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (43 bp):
TGTAAGACCACGTCTAGGACAGAGGCATCGATATAAGAAAACA
Found at i:81357864 original size:11 final size:10
Alignment explanation
Indices: 81357841--81357879 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
81357831 CTATAAATAT
*
81357841 AAAAAATACA
1 AAAAAATTCA
*
81357851 AAAAAATTGA
1 AAAAAATTCA
81357861 AAAAAATTCTA
1 AAAAAATTC-A
81357872 AAAAAATT
1 AAAAAATT
81357880 ATCCTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.72, C:0.05, G:0.03, T:0.21
Consensus pattern (10 bp):
AAAAAATTCA
Found at i:81360518 original size:4 final size:4
Alignment explanation
Indices: 81360491--81360532 Score: 52
Period size: 4 Copynumber: 10.8 Consensus size: 4
81360481 TAAAAAATTC
*
81360491 AATA ACTA AATCA AAT- AA-A AATA AATA AATA AATA AATA AAT
1 AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AATA AAT
81360533 GATACAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
3 4 0.12
4 25 0.76
5 4 0.12
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:81360519 original size:19 final size:18
Alignment explanation
Indices: 81360491--81360527 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
81360481 TAAAAAATTC
*
81360491 AATAACTAAATCAAATAAA
1 AATAAATAAAT-AAATAAA
81360510 AATAAATAAATAAATAAA
1 AATAAATAAATAAATAAA
81360528 TAAATGATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (18 bp):
AATAAATAAATAAATAAA
Found at i:81367648 original size:17 final size:17
Alignment explanation
Indices: 81367598--81367649 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
81367588 ATTAGATAAG
* *
81367598 TATTATTTTATTAATAT
1 TATTATTATATTATTAT
* *
81367615 TTTTATGATATGT-TTAT
1 TATTATTATAT-TATTAT
81367632 TATTATTATATTATTAT
1 TATTATTATATTATTAT
81367649 T
1 T
81367650 TATTTAGTAT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
16 1 0.04
17 25 0.93
18 1 0.04
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (17 bp):
TATTATTATATTATTAT
Found at i:81369543 original size:46 final size:46
Alignment explanation
Indices: 81369491--81369672 Score: 231
Period size: 46 Copynumber: 4.0 Consensus size: 46
81369481 AGTGTACTCT
* * *
81369491 CTGATATGAAATGTGTAAGACCATGGTTGAAAAATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
81369537 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
81369583 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
81369629 ATAACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGACATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
81369673 TCATGTCAAA
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 121 0.99
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:81369979 original size:16 final size:17
Alignment explanation
Indices: 81369958--81369990 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
81369948 ATGATGGAGC
81369958 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
81369974 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
81369991 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:81372746 original size:31 final size:31
Alignment explanation
Indices: 81372706--81372776 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
81372696 AAGTAGTAAC
*
81372706 TACTATGTATCGATGTTTATGTTATAGCAGG
1 TACTATGTATCGATGTTTATATTATAGCAGG
* * * *
81372737 TACTTTGTATCGGTGTTTATATTGTATCAGG
1 TACTATGTATCGATGTTTATATTATAGCAGG
81372768 TACTATGTA
1 TACTATGTA
81372777 CCTATGTTGG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.24, C:0.10, G:0.21, T:0.45
Consensus pattern (31 bp):
TACTATGTATCGATGTTTATATTATAGCAGG
Found at i:81391546 original size:17 final size:17
Alignment explanation
Indices: 81391507--81391548 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
81391497 TTAATTTCTC
* *
81391507 TTTATA-ATTTTATAAT
1 TTTATATATATTAAAAT
81391523 TTT-TATATATTAAAAT
1 TTTATATATATTAAAAT
81391539 TTTATATATA
1 TTTATATATA
81391549 CCCAGCTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 2 0.09
16 14 0.64
17 6 0.27
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTATATATATTAAAAT
Found at i:81392429 original size:25 final size:26
Alignment explanation
Indices: 81392382--81392430 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
81392372 ACTTTCTTTA
** *
81392382 TATATATTTTTAAAATTTTAAATTCT
1 TATATATTTTTAAAAAATAAAATTCT
81392408 TATA-ATTTTTAAAAAATAAAATT
1 TATATATTTTTAAAAAATAAAATT
81392431 TGGAATTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (26 bp):
TATATATTTTTAAAAAATAAAATTCT
Found at i:81392474 original size:19 final size:19
Alignment explanation
Indices: 81392447--81392494 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
81392437 TTTAATATTT
*
81392447 TTTTAAATTTTAAAAAGTA
1 TTTTGAATTTTAAAAAGTA
* *
81392466 TTTTGAATTTTTAATAATTA
1 TTTTGAA-TTTTAAAAAGTA
81392486 TTTTGAATT
1 TTTTGAATT
81392495 ATTTTGTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (19 bp):
TTTTGAATTTTAAAAAGTA
Found at i:81392477 original size:20 final size:20
Alignment explanation
Indices: 81392454--81392494 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
81392444 TTTTTTTAAA
81392454 TTTTAAAAAGTATTTTGAAT
1 TTTTAAAAAGTATTTTGAAT
* *
81392474 TTTTAATAATTATTTTGAAT
1 TTTTAAAAAGTATTTTGAAT
81392494 T
1 T
81392495 ATTTTGTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (20 bp):
TTTTAAAAAGTATTTTGAAT
Found at i:81392958 original size:3 final size:3
Alignment explanation
Indices: 81392950--81392981 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
81392940 CAATAATCTT
81392950 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
81392982 TTAAAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:81396606 original size:3 final size:3
Alignment explanation
Indices: 81396600--81396634 Score: 61
Period size: 3 Copynumber: 11.3 Consensus size: 3
81396590 TATTAAGGTT
81396600 TAA TAA TAA TAA TAAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA T
81396635 TATTATTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:81397342 original size:20 final size:21
Alignment explanation
Indices: 81397312--81397355 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
81397302 ATAAAATAAT
*
81397312 AAACAAAAGTAAAATAAAAAG
1 AAACAAAAGTAAAAGAAAAAG
*
81397333 AAAC-AAAGTAAAAGAAACAG
1 AAACAAAAGTAAAAGAAAAAG
81397353 AAA
1 AAA
81397356 AGAAACAGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.75, C:0.07, G:0.11, T:0.07
Consensus pattern (21 bp):
AAACAAAAGTAAAAGAAAAAG
Found at i:81398540 original size:38 final size:38
Alignment explanation
Indices: 81398498--81398574 Score: 93
Period size: 38 Copynumber: 2.0 Consensus size: 38
81398488 ACTGGGTAGC
* *
81398498 ACTTTACTTCG-GCTAGGCCGATGAGACACTGGGTGCCA
1 ACTTTACTTCGAACTA-GCCGATGAGACACCGGGTGCCA
* * *
81398536 ACTTTGCTTCGAACTATCCGATGAGGCACCGGGTGCCA
1 ACTTTACTTCGAACTAGCCGATGAGACACCGGGTGCCA
81398574 A
1 A
81398575 ATTGGTGTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
38 30 0.91
39 3 0.09
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (38 bp):
ACTTTACTTCGAACTAGCCGATGAGACACCGGGTGCCA
Found at i:81401426 original size:40 final size:40
Alignment explanation
Indices: 81401332--81401476 Score: 191
Period size: 40 Copynumber: 3.6 Consensus size: 40
81401322 TACTCGAATG
* *
81401332 ATATCCGGGCTAAGCCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AGCGACT
* * *
81401373 ACATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * * *
81401413 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
81401453 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
81401477 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
40 62 0.69
41 28 0.31
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:81403453 original size:22 final size:22
Alignment explanation
Indices: 81403428--81403471 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
81403418 TAGTCATATA
81403428 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
81403450 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
81403472 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:81403497 original size:19 final size:17
Alignment explanation
Indices: 81403425--81403509 Score: 52
Period size: 18 Copynumber: 4.8 Consensus size: 17
81403415 ATTTAGTCAT
*
81403425 ATAATAAATTATTAATATA
1 ATAATAAATT-TT-ATTTA
81403444 ATAAATATAATTTATTATTT-
1 AT-AATA-AA-TT-TTATTTA
81403464 -TAATAAA--TTATTTA
1 ATAATAAATTTTATTTA
*
81403478 ATATTTAAATTTTATCTTA
1 ATA-ATAAATTTTAT-TTA
81403497 ATAATAAATTTTA
1 ATAATAAATTTTA
81403510 AAGATAATAA
Statistics
Matches: 54, Mismatches: 3, Indels: 19
0.71 0.04 0.25
Matches are distributed among these distances:
13 6 0.11
15 2 0.04
16 4 0.07
17 2 0.04
18 17 0.31
19 9 0.17
20 4 0.07
21 5 0.09
22 5 0.09
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (17 bp):
ATAATAAATTTTATTTA
Found at i:81403523 original size:15 final size:16
Alignment explanation
Indices: 81403497--81403526 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
81403487 TTTTATCTTA
81403497 ATAATAAATTTTAAAG
1 ATAATAAATTTTAAAG
81403513 ATAAT-AATTTTAAA
1 ATAATAAATTTTAAA
81403527 TAATATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (16 bp):
ATAATAAATTTTAAAG
Found at i:81403584 original size:15 final size:15
Alignment explanation
Indices: 81403564--81403620 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
81403554 ATTCAATATT
81403564 AATATTTTAATAATA
1 AATATTTTAATAATA
*
81403579 AATATTTATTACAAATATA
1 AATA-TT-TTA-ATA-ATA
*
81403598 AATATATTAATAATA
1 AATATTTTAATAATA
81403613 AATATTTT
1 AATATTTT
81403621 GTAGTATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 14 0.41
16 4 0.12
17 6 0.18
18 3 0.09
19 7 0.21
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:81403595 original size:17 final size:17
Alignment explanation
Indices: 81403570--81403619 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
81403560 TATTAATATT
81403570 TTAATAATAAATATTTA
1 TTAATAATAAATATTTA
*
81403587 TTACA-AATATAA-ATATA
1 TTA-ATAATA-AATATTTA
81403604 TTAATAATAAATATTT
1 TTAATAATAAATATTT
81403620 TGTAGTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
16 3 0.11
17 21 0.78
18 3 0.11
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAATAATAAATATTTA
Found at i:81421071 original size:16 final size:16
Alignment explanation
Indices: 81421050--81421080 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81421040 TTTATTATTT
81421050 TATTAACATAATATAA
1 TATTAACATAATATAA
*
81421066 TATTAATATAATATA
1 TATTAACATAATATA
81421081 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:81433455 original size:19 final size:19
Alignment explanation
Indices: 81433428--81433465 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
81433418 ATTTTCCAGA
*
81433428 AAATGATTTACTTTTCTGG
1 AAATAATTTACTTTTCTGG
81433447 AAATAATTTACTTTTCTGG
1 AAATAATTTACTTTTCTGG
81433466 TGTTTTGATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.13, T:0.47
Consensus pattern (19 bp):
AAATAATTTACTTTTCTGG
Found at i:81434928 original size:32 final size:32
Alignment explanation
Indices: 81434882--81434942 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
81434872 TGTCAATCAT
81434882 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
* *
81434914 TTCAATATCTAACAAGCTTGAAACATAAT
1 TTCAATATCCAACAAGCTTAAAACATAAT
81434943 CAATATCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.49, C:0.18, G:0.05, T:0.28
Consensus pattern (32 bp):
TTCAATATCCAACAAGCTTAAAACATAATAAA
Found at i:81434949 original size:27 final size:30
Alignment explanation
Indices: 81434882--81434955 Score: 91
Period size: 32 Copynumber: 2.5 Consensus size: 30
81434872 TGTCAATCAT
*
81434882 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCTAACAAGCTTAAAAC--AATAAA
*
81434914 TTCAATATCTAACAAGCTTGAAAC-AT-AA
1 TTCAATATCTAACAAGCTTAAAACAATAAA
81434942 -TCAATATCTAACAA
1 TTCAATATCTAACAA
81434956 ATTCAAGACA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 14 0.35
28 2 0.05
29 2 0.05
32 22 0.55
ACGTcount: A:0.50, C:0.19, G:0.04, T:0.27
Consensus pattern (30 bp):
TTCAATATCTAACAAGCTTAAAACAATAAA
Found at i:81434966 original size:27 final size:27
Alignment explanation
Indices: 81434915--81434969 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
81434905 CATAATAAAT
* *
81434915 TCAATATCTAACAAGCTTGAAACATAA
1 TCAATATCTAACAAGATTCAAACATAA
81434942 TCAATATCTAACAA-ATTCAAGACATAA
1 TCAATATCTAACAAGATTCAA-ACATAA
81434969 T
1 T
81434970 AATTTCAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.49, C:0.18, G:0.05, T:0.27
Consensus pattern (27 bp):
TCAATATCTAACAAGATTCAAACATAA
Found at i:81440178 original size:55 final size:53
Alignment explanation
Indices: 81440119--81440224 Score: 140
Period size: 55 Copynumber: 2.0 Consensus size: 53
81440109 GGGAAGAGAT
* * *
81440119 TTGAAGAACGGGAGAAGAAGAAGACTTACCTGGATGAAGAATGAGATGGAAAAAG
1 TTGAAGAACGGAAGAAAAAGAAGACTTACCT-GATGAAG-AGGAGATGGAAAAAG
* * *
81440174 TTGAAGAATGGAAGAAAAAGATGGCTTACCTGATGAAGAGGAGATGGAAAA
1 TTGAAGAACGGAAGAAAAAGAAGACTTACCTGATGAAGAGGAGATGGAAAA
81440225 TATCTTACAG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 12 0.27
54 7 0.16
55 26 0.58
ACGTcount: A:0.45, C:0.07, G:0.32, T:0.16
Consensus pattern (53 bp):
TTGAAGAACGGAAGAAAAAGAAGACTTACCTGATGAAGAGGAGATGGAAAAAG
Found at i:81440192 original size:20 final size:22
Alignment explanation
Indices: 81440153--81440193 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
81440143 CTTACCTGGA
*
81440153 TGAAGAATGAGATGGAAAAAGT
1 TGAAGAATGAGATAGAAAAAGT
81440175 TGAAGAATG-GA-AGAAAAAG
1 TGAAGAATGAGATAGAAAAAG
81440194 ATGGCTTACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 2 0.11
22 9 0.50
ACGTcount: A:0.54, C:0.00, G:0.32, T:0.15
Consensus pattern (22 bp):
TGAAGAATGAGATAGAAAAAGT
Found at i:81464642 original size:1 final size:1
Alignment explanation
Indices: 81464638--81464671 Score: 68
Period size: 1 Copynumber: 34.0 Consensus size: 1
81464628 AAAAACAATT
81464638 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
81464672 GTGATTGTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:81465368 original size:55 final size:53
Alignment explanation
Indices: 81465309--81465414 Score: 140
Period size: 55 Copynumber: 2.0 Consensus size: 53
81465299 GGGAAGAGAT
* * *
81465309 TTGAAGAACGGGAGAAGAAGAAGACTTACCTGGATGAAGAATGAGATGGAAAAAG
1 TTGAAGAACGGAAGAAAAAGAAGACTTACCT-GATGAAG-AGGAGATGGAAAAAG
* * *
81465364 TTGAAGAATGGAAGAAAAAGATGGCTTACCTGATGAAGAGGAGATGGAAAA
1 TTGAAGAACGGAAGAAAAAGAAGACTTACCTGATGAAGAGGAGATGGAAAA
81465415 TATCTTACAG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 12 0.27
54 7 0.16
55 26 0.58
ACGTcount: A:0.45, C:0.07, G:0.32, T:0.16
Consensus pattern (53 bp):
TTGAAGAACGGAAGAAAAAGAAGACTTACCTGATGAAGAGGAGATGGAAAAAG
Found at i:81465382 original size:20 final size:22
Alignment explanation
Indices: 81465343--81465383 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
81465333 CTTACCTGGA
*
81465343 TGAAGAATGAGATGGAAAAAGT
1 TGAAGAATGAGATAGAAAAAGT
81465365 TGAAGAATG-GA-AGAAAAAG
1 TGAAGAATGAGATAGAAAAAG
81465384 ATGGCTTACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 2 0.11
22 9 0.50
ACGTcount: A:0.54, C:0.00, G:0.32, T:0.15
Consensus pattern (22 bp):
TGAAGAATGAGATAGAAAAAGT
Found at i:81479196 original size:46 final size:46
Alignment explanation
Indices: 81479146--81479318 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
81479136 TGGTTGAGCA
81479146 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
81479192 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
81479237 CATCCAAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81479285 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81479319 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.57
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81479302 original size:93 final size:93
Alignment explanation
Indices: 81479143--81479313 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
81479133 GGATGGTTGA
* * * *
81479143 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
81479208 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
81479236 GCATCCAAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
81479301 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81479314 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:81481226 original size:13 final size:13
Alignment explanation
Indices: 81481208--81481232 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81481198 TCCTTTGTCT
81481208 TTTCTTTTTTTTC
1 TTTCTTTTTTTTC
81481221 TTTCTTTTTTTT
1 TTTCTTTTTTTT
81481233 TGAAGGTCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTCTTTTTTTTC
Found at i:81481820 original size:6 final size:6
Alignment explanation
Indices: 81481811--81481851 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
81481801 GCTTTTTTTT
* * *
81481811 TTTGCC TTTGCC TTTGCC TTTGCC TTTTCC CTTACC TTTGC
1 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGC
81481852 AATATAGTGC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.02, C:0.34, G:0.12, T:0.51
Consensus pattern (6 bp):
TTTGCC
Found at i:81485742 original size:46 final size:46
Alignment explanation
Indices: 81485692--81485864 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 46
81485682 TGGTTGAGCA
81485692 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
81485738 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* *
81485783 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
81485831 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81485865 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 9, Indels: 22
0.78 0.07 0.16
Matches are distributed among these distances:
42 6 0.06
43 5 0.05
45 2 0.02
46 57 0.53
47 25 0.23
48 2 0.02
50 4 0.04
51 6 0.06
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81485848 original size:93 final size:93
Alignment explanation
Indices: 81485689--81485858 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
81485679 GGATGGTTGA
* * *
81485689 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81485754 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
*
81485782 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81485847 TGAGTCCGAGTT
66 TGAGTCCGAGTT
81485859 CACTTAGGGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:81490835 original size:61 final size:60
Alignment explanation
Indices: 81490759--81490908 Score: 175
Period size: 60 Copynumber: 2.5 Consensus size: 60
81490749 CCTATTCAGA
* *
81490759 AATCAGAGT-TAACTGGGCCTTAGCCCATATCAATATTAATCTGCGCCATAGCCC-CTTAC
1 AATCAGAGTAT-ACTGGGCCTTAGCCCATATCAATATCAATCTGCGCCATAGCCCTATTAC
* * *
81490818 AGTATCAGAGTATACTGGGCC-TAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTAC
1 A--ATCAGAGTATACTGGGCCTTAGCCCATATCAATATCAATCTGCGCCATAGCCCTATTAC
81490879 AAGTC-GAGATATACTGGGCCTT-GCCCATAT
1 AA-TCAGAG-TATACTGGGCCTTAGCCCATAT
81490909 TAACACAATA
Statistics
Matches: 79, Mismatches: 5, Indels: 13
0.81 0.05 0.13
Matches are distributed among these distances:
59 5 0.06
60 51 0.65
61 22 0.28
62 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (60 bp):
AATCAGAGTATACTGGGCCTTAGCCCATATCAATATCAATCTGCGCCATAGCCCTATTAC
Found at i:81493007 original size:12 final size:13
Alignment explanation
Indices: 81492985--81493013 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
81492975 TAAACTAAAC
81492985 ATAAGAAATAATA
1 ATAAGAAATAATA
81492998 ATAA-AAATAATA
1 ATAAGAAATAATA
81493010 ATAA
1 ATAA
81493014 TGATAACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.24
Consensus pattern (13 bp):
ATAAGAAATAATA
Found at i:81496099 original size:41 final size:41
Alignment explanation
Indices: 81496006--81496191 Score: 169
Period size: 41 Copynumber: 4.5 Consensus size: 41
81495996 GATTCAGATA
* ** * *
81496006 TATATATGACACTTAGTGTGCGATTTGGA-ATAGATTCGAC
1 TATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTCGAC
*
81496046 TATATATAGCACTTAGTGTGCGAGATCGAGATAGCTTCGAC
1 TATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTCGAC
* * *
81496087 TATATATGGCACTTACTGTGCTAGATCGAGATAG-TTGCGGC
1 TATATATGGCACTTAGTGTGCGAGATCGAGATAGCTT-CGAC
* * * ** * *
81496128 TATGTAAGGCACTTAGTGTGAGAGATTAAAATAGCTTCAAC
1 TATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTCGAC
* * *
81496169 TATGTATTGGCACATAATGTGCG
1 TATATA-TGGCACTTAGTGTGCG
81496192 TGATATCGAG
Statistics
Matches: 118, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
40 26 0.22
41 78 0.66
42 14 0.12
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.32
Consensus pattern (41 bp):
TATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTCGAC
Found at i:81498023 original size:47 final size:47
Alignment explanation
Indices: 81497954--81498048 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
81497944 ATATTTATCA
* *
81497954 TACAATTCAGATAATAATAACAATATCTGTCTTAGGTTTCATTCCCC
1 TACAATTCAGATAATAATAACAAGATCTATCTTAGGTTTCATTCCCC
81498001 TACAATTCAGATAATAATAACAAGATCTATCTTAGGTTTCATTCCCC
1 TACAATTCAGATAATAATAACAAGATCTATCTTAGGTTTCATTCCCC
81498048 T
1 T
81498049 TAGGTATTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.36
Consensus pattern (47 bp):
TACAATTCAGATAATAATAACAAGATCTATCTTAGGTTTCATTCCCC
Found at i:81500480 original size:13 final size:14
Alignment explanation
Indices: 81500464--81500495 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
81500454 AATTAAAGAT
81500464 AAAAGTAA-AAATA
1 AAAAGTAATAAATA
81500477 AAAA-TAATAAATA
1 AAAAGTAATAAATA
81500490 AAAAGT
1 AAAAGT
81500496 TTTTAAACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 3 0.18
13 13 0.76
14 1 0.06
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (14 bp):
AAAAGTAATAAATA
Found at i:81515535 original size:37 final size:37
Alignment explanation
Indices: 81515459--81515543 Score: 116
Period size: 37 Copynumber: 2.3 Consensus size: 37
81515449 TTTGAGTACG
* * *
81515459 TGTAAGACCATAGCTGGGCTATGGCATCGTAATGACA
1 TGTAAGACCATAGCTAGGCTATGGCATCATAATCACA
* * *
81515496 TGTAAGACCATAGCTAGGCTATGGCATTATGATCCCA
1 TGTAAGACCATAGCTAGGCTATGGCATCATAATCACA
81515533 TGTAAGACCAT
1 TGTAAGACCAT
81515544 GTCTGGGACA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (37 bp):
TGTAAGACCATAGCTAGGCTATGGCATCATAATCACA
Found at i:81515578 original size:48 final size:48
Alignment explanation
Indices: 81515525--81515703 Score: 254
Period size: 48 Copynumber: 3.7 Consensus size: 48
81515515 TATGGCATTA
*
81515525 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* *
81515573 TGATCCCATGTAAGATCATGTCTAGGACATGGCATTGGCATCGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
* * *
81515621 TGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGAGATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
**
81515669 TGAT--TTTGGATAAGACCATGTCTGGGACATGGCAT
1 TGATCCCAT-G-TAAGACCATGTCTGGGACATGGCAT
81515704 CAATATGAGA
Statistics
Matches: 117, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
46 1 0.01
47 1 0.01
48 115 0.98
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.28
Consensus pattern (48 bp):
TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG
Found at i:81519626 original size:42 final size:42
Alignment explanation
Indices: 81519579--81519658 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 42
81519569 TCGGTTTGTG
* * *
81519579 ATTTCATATAAGACCTTGTCAGGGACATGGCGTTGATATCAT
1 ATTTCATATAAGACCATATCAGGGACATGGCATTGATATCAT
* * *
81519621 ATTTCATGTAAGACCATATCTGGGATATGGCATTGATA
1 ATTTCATATAAGACCATATCAGGGACATGGCATTGATA
81519659 CGGTCCTAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (42 bp):
ATTTCATATAAGACCATATCAGGGACATGGCATTGATATCAT
Found at i:81521087 original size:41 final size:40
Alignment explanation
Indices: 81521001--81521186 Score: 194
Period size: 41 Copynumber: 4.5 Consensus size: 40
81520991 AATTCAAATA
*
81521001 TATATATGGCACTTAGTGTGCGA-TTCAGAATAGCTTCGGC
1 TATATATGGCACTTAGTGTGCGAGATCAG-ATAGCTTCGGC
*
81521041 TATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTCGGT
1 TATATATGGCACTTAGTGTGCGAGATC-AGATAGCTTCGGC
* * *
81521082 TATATATGGCAATTAGTGTGTGAGATCAAGATAGCTTTGGC
1 TATATATGGCACTTAGTGTGCGAGATC-AGATAGCTTCGGC
* * * * * **
81521123 TATCTAAGGCACTTAGTGTGTGAGATTAAAATAGCTTCAAC
1 TATATATGGCACTTAGTGTGCGAGA-TCAGATAGCTTCGGC
* *
81521164 TATGTATTGGCATTTAGTGTGCG
1 TATATA-TGGCACTTAGTGTGCG
81521187 TGATATCGAG
Statistics
Matches: 123, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
40 23 0.19
41 84 0.68
42 16 0.13
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.34
Consensus pattern (40 bp):
TATATATGGCACTTAGTGTGCGAGATCAGATAGCTTCGGC
Found at i:81529895 original size:80 final size:80
Alignment explanation
Indices: 81529807--81529967 Score: 322
Period size: 80 Copynumber: 2.0 Consensus size: 80
81529797 AGTCCCCTTG
81529807 GCCCAAACCCCTTTTAGGACAGAAGCCTTTCAAAAGAGAATCGTTAACAAGGACATCATAAGAGA
1 GCCCAAACCCCTTTTAGGACAGAAGCCTTTCAAAAGAGAATCGTTAACAAGGACATCATAAGAGA
81529872 CAGTGGAAATGTATT
66 CAGTGGAAATGTATT
81529887 GCCCAAACCCCTTTTAGGACAGAAGCCTTTCAAAAGAGAATCGTTAACAAGGACATCATAAGAGA
1 GCCCAAACCCCTTTTAGGACAGAAGCCTTTCAAAAGAGAATCGTTAACAAGGACATCATAAGAGA
81529952 CAGTGGAAATGTATT
66 CAGTGGAAATGTATT
81529967 G
1 G
81529968 GTAAATAAGA
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 81 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (80 bp):
GCCCAAACCCCTTTTAGGACAGAAGCCTTTCAAAAGAGAATCGTTAACAAGGACATCATAAGAGA
CAGTGGAAATGTATT
Found at i:81531124 original size:37 final size:37
Alignment explanation
Indices: 81531076--81531156 Score: 101
Period size: 37 Copynumber: 2.2 Consensus size: 37
81531066 TTTCATTTTC
* *
81531076 ATTTCCATTTTGGCGAAAACCACATTCATTTCCAAATG
1 ATTT-CATTTTGGAGAAAACCACAATCATTTCCAAATG
* **
81531114 ATTTCATTTTGGAGAAAATCTTAATCATTTCCAAATG
1 ATTTCATTTTGGAGAAAACCACAATCATTTCCAAATG
81531151 -TTTCAT
1 ATTTCAT
81531157 ATTTCTCTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
36 6 0.16
37 28 0.74
38 4 0.11
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.40
Consensus pattern (37 bp):
ATTTCATTTTGGAGAAAACCACAATCATTTCCAAATG
Found at i:81534823 original size:20 final size:19
Alignment explanation
Indices: 81534800--81534857 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
81534790 AACAATACAC
81534800 AAATTGAAAATATATAATAA
1 AAATTGAAAATATA-AATAA
** *
81534820 AAATTGATTATATTAAAATTA
1 AAATTGAAAATA-T-AAATAA
81534841 AAATT-AAAATATAAATA
1 AAATTGAAAATATAAATA
81534858 TAATTAAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
18 4 0.13
19 1 0.03
20 14 0.47
21 10 0.33
22 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (19 bp):
AAATTGAAAATATAAATAA
Found at i:81534865 original size:23 final size:23
Alignment explanation
Indices: 81534836--81534881 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
81534826 ATTATATTAA
* *
81534836 AATTAAAATTAAAATATAAATAT
1 AATTAAAAATAAAAAATAAATAT
*
81534859 AATTAAAAATAAAAAATATATAT
1 AATTAAAAATAAAAAATAAATAT
81534882 TTATTATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (23 bp):
AATTAAAAATAAAAAATAAATAT
Found at i:81541249 original size:35 final size:35
Alignment explanation
Indices: 81541205--81541276 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
81541195 GAATAATCAC
*
81541205 AAATTTTAAATATAAACAATAAAAAATAAATATAA
1 AAATCTTAAATATAAACAATAAAAAATAAATATAA
* *
81541240 AAATCTTAAATATAGACAGTAAAAAATAAATATAA
1 AAATCTTAAATATAAACAATAAAAAATAAATATAA
81541275 AA
1 AA
81541277 GATACTCAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.67, C:0.04, G:0.03, T:0.26
Consensus pattern (35 bp):
AAATCTTAAATATAAACAATAAAAAATAAATATAA
Found at i:81552186 original size:72 final size:72
Alignment explanation
Indices: 81552069--81552252 Score: 350
Period size: 72 Copynumber: 2.6 Consensus size: 72
81552059 ACAACTTGAC
* *
81552069 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACGACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
81552134 ACTAACA
66 ACTAACA
81552141 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
81552206 ACTAACA
66 ACTAACA
81552213 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
81552253 AATAATAATA
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
72 110 1.00
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (72 bp):
AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
ACTAACA
Found at i:81552261 original size:3 final size:3
Alignment explanation
Indices: 81552253--81552287 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
81552243 ATTACATCCA
81552253 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
81552288 AACATGTGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:81556623 original size:72 final size:72
Alignment explanation
Indices: 81556506--81556761 Score: 503
Period size: 72 Copynumber: 3.6 Consensus size: 72
81556496 ACAACTTGAC
*
81556506 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
81556571 ACTAACA
66 ACTAACA
81556578 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
81556643 ACTAACA
66 ACTAACA
81556650 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
81556715 ACTAACA
66 ACTAACA
81556722 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
81556762 AATAATAATA
Statistics
Matches: 183, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 183 1.00
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.27
Consensus pattern (72 bp):
AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
ACTAACA
Found at i:81556770 original size:3 final size:3
Alignment explanation
Indices: 81556762--81556793 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
81556752 ATTACATCCA
81556762 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
81556794 AACATGTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:81559209 original size:21 final size:22
Alignment explanation
Indices: 81559166--81559209 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
81559156 GTCAACATTT
**
81559166 AATTAATTTTTAAAAATTTAAA
1 AATTAATTTTTAAAAATAAAAA
*
81559188 AATT-ATTTTTTAAAATAAAAA
1 AATTAATTTTTAAAAATAAAAA
81559209 A
1 A
81559210 TCATTAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
AATTAATTTTTAAAAATAAAAA
Found at i:81560245 original size:16 final size:17
Alignment explanation
Indices: 81560213--81560250 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
81560203 AGATAAATAG
81560213 ATTTAAACATCATTTAA
1 ATTTAAACATCATTTAA
*
81560230 ATTTAAAC-TTATTTAA
1 ATTTAAACATCATTTAA
81560246 ATTTA
1 ATTTA
81560251 TTTTAGATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTTAAACATCATTTAA
Found at i:81560481 original size:2 final size:2
Alignment explanation
Indices: 81560474--81560502 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
81560464 TATTTGTGAT
81560474 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81560503 GGTAATCCGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:81561522 original size:16 final size:18
Alignment explanation
Indices: 81561495--81561527 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
81561485 ATAAAAATAA
81561495 TAAAAATAATTA-AAAAC
1 TAAAAATAATTACAAAAC
81561512 TAAAAAT-ATTACAAAA
1 TAAAAATAATTACAAAA
81561528 ATATTATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (18 bp):
TAAAAATAATTACAAAAC
Found at i:81561637 original size:17 final size:17
Alignment explanation
Indices: 81561593--81561646 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 17
81561583 AATAAATTTT
81561593 TTATAAATATTAAAAAAA
1 TTATAAA-ATTAAAAAAA
81561611 TCTA-ATAAATTAAAAAAA
1 T-TATA-AAATTAAAAAAA
81561629 TTATAAAATTAATAAAAA
1 TTATAAAATTAA-AAAAA
81561647 AATATTTGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
17 9 0.28
18 19 0.59
19 4 0.12
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (17 bp):
TTATAAAATTAAAAAAA
Found at i:81561638 original size:8 final size:9
Alignment explanation
Indices: 81561595--81561645 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
81561585 TAAATTTTTT
81561595 ATAAATATTA
1 ATAAA-ATTA
*
81561605 AAAAAATCTA
1 ATAAAAT-TA
81561615 AT-AAATTA
1 ATAAAATTA
*
81561623 AAAAAATT-
1 ATAAAATTA
81561631 ATAAAATTA
1 ATAAAATTA
81561640 ATAAAA
1 ATAAAA
81561646 AAATATTTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
8 10 0.29
9 17 0.50
10 7 0.21
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (9 bp):
ATAAAATTA
Found at i:81562173 original size:21 final size:22
Alignment explanation
Indices: 81562146--81562189 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
81562136 TGTACTATAC
*
81562146 TTAAAAATTGAAAATAA-AATTT
1 TTAAAAA-TAAAAATAATAATTT
81562168 TTAAAAATAAAAATAATAATTT
1 TTAAAAATAAAAATAATAATTT
81562190 ATCAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (22 bp):
TTAAAAATAAAAATAATAATTT
Found at i:81570583 original size:24 final size:25
Alignment explanation
Indices: 81570519--81570601 Score: 77
Period size: 24 Copynumber: 3.4 Consensus size: 25
81570509 CTAATATATT
81570519 AGCTC-ATAAGAGCTTACTGTTCTC
1 AGCTCGATAAGAGCTTACTGTTCTC
* * *
81570543 AGCTCG-TCAGGGTTTACTGTT-TCC
1 AGCTCGATAAGAGCTTACTGTTCT-C
*
81570567 AGCTCGAT-AGAGCTTACTGATCATC
1 AGCTCGATAAGAGCTTACTGTTC-TC
81570592 AGCTC-ATAAG
1 AGCTCGATAAG
81570602 GAGTTTATCA
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
23 1 0.02
24 36 0.77
25 9 0.19
26 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (25 bp):
AGCTCGATAAGAGCTTACTGTTCTC
Found at i:81579642 original size:16 final size:16
Alignment explanation
Indices: 81579614--81579654 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
81579604 TACTTAAGTT
81579614 TAATAATCCTATAATA
1 TAATAATCCTATAATA
* *
81579630 TACTAATCTTATAATA
1 TAATAATCCTATAATA
81579646 TAATAATCC
1 TAATAATCC
81579655 AATGGCCATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.39
Consensus pattern (16 bp):
TAATAATCCTATAATA
Found at i:81588969 original size:30 final size:30
Alignment explanation
Indices: 81588935--81588997 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
81588925 TGAACAAACT
*
81588935 ACTTTTAATTGAAATTTTTAATTTTTTAAA
1 ACTTTTAATTGAAATTTTTAACTTTTTAAA
81588965 ACTTTTAATTGAAATTTTTAACTTTTTAAA
1 ACTTTTAATTGAAATTTTTAACTTTTTAAA
81588995 ACT
1 ACT
81588998 GCTTTTAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (30 bp):
ACTTTTAATTGAAATTTTTAACTTTTTAAA
Found at i:81594752 original size:27 final size:26
Alignment explanation
Indices: 81594687--81594740 Score: 83
Period size: 27 Copynumber: 2.1 Consensus size: 26
81594677 ATGCTCCAAT
81594687 AAGC-CACTATCATTAAATTGCACTG
1 AAGCACACTATCATTAAATTGCACTG
*
81594712 AAGCACTACTATCATTTAATTGCACTG
1 AAGCAC-ACTATCATTAAATTGCACTG
81594739 AA
1 AA
81594741 ATGTCACTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 4 0.15
26 1 0.04
27 21 0.81
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.30
Consensus pattern (26 bp):
AAGCACACTATCATTAAATTGCACTG
Found at i:81596272 original size:23 final size:22
Alignment explanation
Indices: 81596246--81596289 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
81596236 ATGACATTTT
81596246 CTTCGTATAATTCACTTTTAATC
1 CTTCGTAT-ATTCACTTTTAATC
* * *
81596269 CTTCTTCTATTTACTTTTAAT
1 CTTCGTATATTCACTTTTAAT
81596290 TCAATTTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.23, C:0.20, G:0.02, T:0.55
Consensus pattern (22 bp):
CTTCGTATATTCACTTTTAATC
Found at i:81596868 original size:16 final size:17
Alignment explanation
Indices: 81596854--81596885 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
81596844 ACTAAGTTAT
81596854 AACTAATTAAAGTTAAC
1 AACTAATTAAAGTTAAC
81596871 AACTAATTAAA-TTAA
1 AACTAATTAAAGTTAA
81596886 TTAAAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.56, C:0.09, G:0.03, T:0.31
Consensus pattern (17 bp):
AACTAATTAAAGTTAAC
Found at i:81603341 original size:44 final size:41
Alignment explanation
Indices: 81603244--81603342 Score: 112
Period size: 40 Copynumber: 2.4 Consensus size: 41
81603234 GAATGGTATT
* *
81603244 TGGCACTAAGTGTGCGATTCAAAATAGCTTCGGCTATCTGA
1 TGGCACTAAGTGTGCGATCCAAAATAGCTTCAGCTATCTGA
* *
81603285 -GGCACTAAGTGTGCGATACCAAGATAGCTTCAGTTAAT-TGAAA
1 TGGCACTAAGTGTGCGAT-CCAAAATAGCTTCAGCT-ATCTG--A
81603328 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
81603343 AAAATATTTC
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
40 17 0.35
41 15 0.31
42 2 0.04
43 1 0.02
44 14 0.29
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGATCCAAAATAGCTTCAGCTATCTGA
Found at i:81604794 original size:39 final size:39
Alignment explanation
Indices: 81604725--81604804 Score: 97
Period size: 39 Copynumber: 2.1 Consensus size: 39
81604715 AACATGTTTT
* ** *
81604725 TGAGTATTGCGATGTACACTTGAATGTTATGCGATTATA
1 TGAGTATTGCGATATACACTTGAACATTATGCAATTATA
* * *
81604764 TGAGTATTGCTATATACGCTTGAACATTATGTAATTATA
1 TGAGTATTGCGATATACACTTGAACATTATGCAATTATA
81604803 TG
1 TG
81604805 CTTAAAAGTG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (39 bp):
TGAGTATTGCGATATACACTTGAACATTATGCAATTATA
Found at i:81608744 original size:21 final size:21
Alignment explanation
Indices: 81608720--81608759 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
81608710 TTGAATTGGG
81608720 AACCAGTGG-TCTGATTATTGC
1 AACCAGTGGTTC-GATTATTGC
*
81608741 AACCATTGGTTCGATTATT
1 AACCAGTGGTTCGATTATT
81608760 AGAATACTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (21 bp):
AACCAGTGGTTCGATTATTGC
Found at i:81608972 original size:21 final size:22
Alignment explanation
Indices: 81608946--81608991 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
81608936 AAAGTGGATA
*
81608946 AAAAAAGTACAATTATCAAA-T
1 AAAAAAGTACAATTACCAAACT
*
81608967 AAAAAAGTACAGTTACCAAACT
1 AAAAAAGTACAATTACCAAACT
81608989 AAA
1 AAA
81608992 CCTAGCTGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.61, C:0.13, G:0.07, T:0.20
Consensus pattern (22 bp):
AAAAAAGTACAATTACCAAACT
Found at i:81615114 original size:16 final size:16
Alignment explanation
Indices: 81615095--81615129 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
81615085 ATTTATAAAA
81615095 ATAAAAAT-TATTTAAT
1 ATAAAAATAT-TTTAAT
81615111 ATAAAAATATTTTAAT
1 ATAAAAATATTTTAAT
81615127 ATA
1 ATA
81615130 TTTTAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 17 0.94
17 1 0.06
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
ATAAAAATATTTTAAT
Found at i:81615537 original size:19 final size:21
Alignment explanation
Indices: 81615515--81615553 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
81615505 GCTTCAATTT
*
81615515 TTTTAA-AT-TATAATATATC
1 TTTTAACATATATAAAATATC
81615534 TTTTAACATATATAAAATAT
1 TTTTAACATATATAAAATAT
81615554 GCAATATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 2 0.12
21 9 0.53
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTTAACATATATAAAATATC
Found at i:81619117 original size:39 final size:39
Alignment explanation
Indices: 81619065--81619142 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
81619055 CGAGTTTAAT
81619065 TTTCTTTCTGGGAATTGAATAATTAATATCAGAAGAGAA
1 TTTCTTTCTGGGAATTGAATAATTAATATCAGAAGAGAA
81619104 TTTCTTTCTGGGAATTGAATAATTAATATCAGAAGAGAA
1 TTTCTTTCTGGGAATTGAATAATTAATATCAGAAGAGAA
81619143 AGACCAACCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (39 bp):
TTTCTTTCTGGGAATTGAATAATTAATATCAGAAGAGAA
Found at i:81630179 original size:13 final size:14
Alignment explanation
Indices: 81630147--81630181 Score: 54
Period size: 13 Copynumber: 2.5 Consensus size: 14
81630137 TTCCTTTCAA
81630147 AAAATTATTATTATT
1 AAAATT-TTATTATT
81630162 AAAATTTTATTA-T
1 AAAATTTTATTATT
81630175 AAAATTT
1 AAAATTT
81630182 AAAAGAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 8 0.40
14 6 0.30
15 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
AAAATTTTATTATT
Found at i:81631809 original size:75 final size:75
Alignment explanation
Indices: 81631686--81631836 Score: 302
Period size: 75 Copynumber: 2.0 Consensus size: 75
81631676 CACATGAGAG
81631686 TATGTCTCTTACTAATTAATGTTGGGCCTTTAAGAAAATCCTTGTGCTACAAGTCGTGTTTTATA
1 TATGTCTCTTACTAATTAATGTTGGGCCTTTAAGAAAATCCTTGTGCTACAAGTCGTGTTTTATA
81631751 TCTTACGAGT
66 TCTTACGAGT
81631761 TATGTCTCTTACTAATTAATGTTGGGCCTTTAAGAAAATCCTTGTGCTACAAGTCGTGTTTTATA
1 TATGTCTCTTACTAATTAATGTTGGGCCTTTAAGAAAATCCTTGTGCTACAAGTCGTGTTTTATA
81631826 TCTTACGAGT
66 TCTTACGAGT
81631836 T
1 T
81631837 TATTTTTCTC
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.42
Consensus pattern (75 bp):
TATGTCTCTTACTAATTAATGTTGGGCCTTTAAGAAAATCCTTGTGCTACAAGTCGTGTTTTATA
TCTTACGAGT
Found at i:81635694 original size:20 final size:20
Alignment explanation
Indices: 81635673--81635725 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
81635663 TCTTTCTATA
81635673 AAAAT-ATGATGAACAAATT
1 AAAATAATGATGAACAAATT
81635692 AAAATAATGATGAACAAATT
1 AAAATAATGATGAACAAATT
81635712 AAAATAATGATGAA
1 AAAATAATGATGAA
81635726 AATATGTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 5 0.15
20 28 0.85
ACGTcount: A:0.60, C:0.04, G:0.11, T:0.25
Consensus pattern (20 bp):
AAAATAATGATGAACAAATT
Found at i:81640630 original size:43 final size:43
Alignment explanation
Indices: 81640474--81640635 Score: 182
Period size: 43 Copynumber: 3.8 Consensus size: 43
81640464 CAAAGTCTGC
* *** * *
81640474 TATAAATTTTGCTTGTGTATAGTATTTAACAATGGGCGAGTTG
1 TATAAAGTTTGCTTGTGTATAGTATTCGCCAATAGGAGAGTTG
* * *
81640517 TATAAAGTTTGCTTGTGTATAGTATTCACCACTAGGTGAGTTG
1 TATAAAGTTTGCTTGTGTATAGTATTCGCCAATAGGAGAGTTG
* * *
81640560 TATAAAGTTTGCTTATGTATAATATTCGTCAATAGGAGAGTTG
1 TATAAAGTTTGCTTGTGTATAGTATTCGCCAATAGGAGAGTTG
* *
81640603 TATGAAGTCTT-CTTGTGTATTGTATTCGCCAAT
1 TATAAAGT-TTGCTTGTGTATAGTATTCGCCAAT
81640636 GGGCGAACTA
Statistics
Matches: 101, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
43 99 0.98
44 2 0.02
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (43 bp):
TATAAAGTTTGCTTGTGTATAGTATTCGCCAATAGGAGAGTTG
Found at i:81642014 original size:24 final size:24
Alignment explanation
Indices: 81641953--81641998 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
81641943 CAGTTTGAAA
* *
81641953 GAGCGTCCCGTTATTAGCTCTCAT
1 GAGCATCCCGTTATTAGCCCTCAT
81641977 GAGCATCCCGTTATTAGCCCTC
1 GAGCATCCCGTTATTAGCCCTC
81641999 TCGAGCTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.17, C:0.33, G:0.20, T:0.30
Consensus pattern (24 bp):
GAGCATCCCGTTATTAGCCCTCAT
Found at i:81642177 original size:26 final size:26
Alignment explanation
Indices: 81642129--81642179 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
81642119 ATGGCTTTTT
* *
81642129 GTGAGCTTCTCGATTAAAGGCTCTTA
1 GTGAGCTTCTCGATCAAACGCTCTTA
* *
81642155 GTGAGCTTCTTGATCAATCGCTCTT
1 GTGAGCTTCTCGATCAAACGCTCTT
81642180 CAGAGCTTCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTGAGCTTCTCGATCAAACGCTCTTA
Found at i:81643752 original size:26 final size:26
Alignment explanation
Indices: 81643716--81643775 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
81643706 CATACCCCAG
81643716 TAAAATTTTGACAATTTTA-CTCCCGA
1 TAAAATTTTGACAATTTTACCT-CCGA
**
81643742 TAAAATTTTGATGATTTTACCTCCGA
1 TAAAATTTTGACAATTTTACCTCCGA
81643768 TAAAATTT
1 TAAAATTT
81643776 CGAGAAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 29 0.94
27 2 0.06
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (26 bp):
TAAAATTTTGACAATTTTACCTCCGA
Found at i:81646596 original size:47 final size:47
Alignment explanation
Indices: 81646527--81646735 Score: 208
Period size: 47 Copynumber: 4.5 Consensus size: 47
81646517 ATTGACGGAA
* * * *
81646527 AAGACCATGGTTGGGCCATGGCAAC-ATGTGATATGTGATTTCCGTAT
1 AAGACCATAGCTGGGCTATGGCATCGATGTGATATGTGATTT-CGTAT
* * *
81646574 AAGACCATAGCTGGGCTATGGCATCGGTGTGATATGAGCTTTCGTAT
1 AAGACCATAGCTGGGCTATGGCATCGATGTGATATGTGATTTCGTAT
* * * * * * *
81646621 AGGACCATATCTGGGATATGGCATCGGTGTGATATGTGCTTTTGTGT
1 AAGACCATAGCTGGGCTATGGCATCGATGTGATATGTGATTTCGTAT
* * *
81646668 AAGACCATATCTGGGATATGGCATC-AGTGTGATATGTGA-TTCGTGT
1 AAGACCATAGCTGGGCTATGGCATCGA-TGTGATATGTGATTTCGTAT
* *
81646714 AAGACCGTGGCTGGGCTATGGC
1 AAGACCATAGCTGGGCTATGGC
81646736 TTTAGTGTGT
Statistics
Matches: 139, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
46 24 0.17
47 102 0.73
48 13 0.09
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.31
Consensus pattern (47 bp):
AAGACCATAGCTGGGCTATGGCATCGATGTGATATGTGATTTCGTAT
Found at i:81654253 original size:30 final size:30
Alignment explanation
Indices: 81654217--81654276 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
81654207 TTCCCGAGCC
81654217 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* *
81654247 TAGGGGCAAAAGTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
81654277 AGTATTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:81654749 original size:46 final size:46
Alignment explanation
Indices: 81654699--81654871 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
81654689 TGGTTGAGCA
81654699 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81654745 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
81654790 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGAATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
81654838 -CTGGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81654872 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 20
0.77 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 58 0.55
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81654855 original size:93 final size:93
Alignment explanation
Indices: 81654696--81654866 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
81654686 GGATGGTTGA
* * *
81654696 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGAATGCGAACGTCCGAACTCGTTGAGT
81654761 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
81654789 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGAATGCGAACG-CTGGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGAATGCGAACGTC-CGAACTCGTTGAG
81654853 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
81654867 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGAATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Done.