Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 246 of 344
Found at i:81657427 original size:14 final size:14
Alignment explanation
Indices: 81657408--81657437 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
81657398 AATGACGAAT
81657408 GATAAGGGATGAGG
1 GATAAGGGATGAGG
81657422 GATAAGGGATGAGG
1 GATAAGGGATGAGG
81657436 GA
1 GA
81657438 ATTAAGGGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.50, T:0.13
Consensus pattern (14 bp):
GATAAGGGATGAGG
Found at i:81659085 original size:46 final size:45
Alignment explanation
Indices: 81659014--81659160 Score: 147
Period size: 46 Copynumber: 3.2 Consensus size: 45
81659004 TATGTGCGCT
81659014 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGCAT-GGCCACATTATGAAAGCC
* * *
81659060 AGTGTAAGACACGTCTGGGATATGCAT--CAACATTGA-GACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATGGCCACATT-ATGA--A-AGCC
* * *
81659106 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATATGCAAGCC
1 AGTGTAAGACATGTCTGGGACATGCA-TGGCCAC-A-TTATGAAAGCC
81659154 AGTGTAA
1 AGTGTAA
81659161 AACCTATTTG
Statistics
Matches: 82, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
43 8 0.10
44 1 0.01
45 1 0.01
46 53 0.65
47 1 0.01
48 11 0.13
49 3 0.04
50 2 0.02
51 2 0.02
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATGGCCACATTATGAAAGCC
Found at i:81659201 original size:92 final size:93
Alignment explanation
Indices: 81659014--81659326 Score: 289
Period size: 92 Copynumber: 3.3 Consensus size: 93
81659004 TATGTGCGCT
* *
81659014 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAAAGCCAGTGTAAGACAC-GTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAATATGAAAGCCAGTGTAAGAC-CTGTCTG
*
81659077 GGATAT-GCATCAACATTGAGACGAGAGCC
65 GGACATGGCATCAACATT-AGACGAGAGCC
* * * * *
81659106 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATATGCAAGCCAGTGTAAAACCTATTTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-ATATGAAAGCCAGTGTAAGACCTGTCTG
* * *
81659171 GGACATGGCATCAGC-TT-GAC-ATGTGTC
65 GGACATGGCATCAACATTAGACGA-GAGCC
* * * * * *
81659198 AGTGTATGACCTATCTGGGACATGGCATCGGCGTTGATATATGAAAGTCAGTGTAAGACCTGTCT
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGA-ATATGAAAGCCAGTGTAAGACCTGTCT
* * *
81659263 GGGACATGGCATCGAC-TTAGATGTGTGAGCC
64 GGGACATGGCATCAACATTAGA--CGAGAGCC
* *
81659294 AGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
81659327 ATCGTACCCT
Statistics
Matches: 176, Mismatches: 34, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
91 1 0.01
92 58 0.33
93 50 0.28
94 30 0.17
95 7 0.04
96 11 0.06
97 19 0.11
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAATATGAAAGCCAGTGTAAGACCTGTCTGG
GACATGGCATCAACATTAGACGAGAGCC
Found at i:81659258 original size:49 final size:46
Alignment explanation
Indices: 81659105--81659326 Score: 164
Period size: 48 Copynumber: 4.7 Consensus size: 46
81659095 AGACGAGAGC
* * * * *
81659105 CAGTGTAAGACATGTCTGGGACAT-GCATTGGCCTCGAGATATGCAAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGG-CTTGA-ATATG-AAGT
* * * * *
81659153 CAGTGTAAAACCTATTTGGGACATGGCATCAGCTTG-ACATG-TGT
1 CAGTGTAAGACCTATCTGGGACATGGCATCGGCTTGAATATGAAGT
*
81659197 CAGTGTATGACCTATCTGGGACATGGCATCGGCGTTGATATATGAAAGT
1 CAGTGTAAGACCTATCTGGGACATGGCATCGGC-TTGA-ATATG-AAGT
* * * * *
81659246 CAGTGTAAGACCTGTCTGGGACATGGCATCGACTT-AGATGTGTGAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGGCTTGA-ATATG-AAGT
* * *
81659293 CAGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 CAGTGTAAGACC-TATCTGGGACATGGCATCGGC
81659327 ATCGTACCCT
Statistics
Matches: 140, Mismatches: 27, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
44 30 0.21
45 3 0.02
46 4 0.03
47 23 0.16
48 43 0.31
49 37 0.26
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (46 bp):
CAGTGTAAGACCTATCTGGGACATGGCATCGGCTTGAATATGAAGT
Found at i:81662663 original size:24 final size:24
Alignment explanation
Indices: 81662636--81662733 Score: 151
Period size: 24 Copynumber: 4.0 Consensus size: 24
81662626 AAGGCTGTCA
81662636 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
81662660 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
81662684 GGAGAGGATTTAGGAACTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
81662708 GGAGAAGATTTAGGAGCTGATTAAG
1 GGAGAAGATTTAGGAGCTGA-TAAG
81662733 G
1 G
81662734 AGCAGGAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
24 63 0.94
25 4 0.06
ACGTcount: A:0.37, C:0.04, G:0.38, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:81662729 original size:12 final size:12
Alignment explanation
Indices: 81662642--81662736 Score: 50
Period size: 12 Copynumber: 7.9 Consensus size: 12
81662632 GTCAGGAGAA
*
81662642 GATTTAGGAGCT
1 GATTAAGGAGCT
**
81662654 GA-TAAGGGAGAG
1 GATTAA-GGAGCT
*
81662666 GATTTAGGAGCT
1 GATTAAGGAGCT
**
81662678 GA-TAAGGGAGAG
1 GATTAA-GGAGCT
* *
81662690 GATTTAGGAACT
1 GATTAAGGAGCT
* **
81662702 GATAAAGGAGAA
1 GATTAAGGAGCT
*
81662714 GATTTAGGAGCT
1 GATTAAGGAGCT
81662726 GATTAAGGAGC
1 GATTAAGGAGC
81662737 AGGAGTTGGC
Statistics
Matches: 56, Mismatches: 23, Indels: 8
0.64 0.26 0.09
Matches are distributed among these distances:
11 4 0.07
12 48 0.86
13 4 0.07
ACGTcount: A:0.36, C:0.05, G:0.37, T:0.22
Consensus pattern (12 bp):
GATTAAGGAGCT
Found at i:81664429 original size:33 final size:34
Alignment explanation
Indices: 81664352--81664432 Score: 85
Period size: 33 Copynumber: 2.4 Consensus size: 34
81664342 TATGGGCCAT
* *
81664352 ACTGTTATCTGAATAAGGGGCTAAGGCCTAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * **
81664386 AATGTAATCTGAA-AA-GGGCTCTGGCCCAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
81664419 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
81664433 GGGCTTAGGC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
32 12 0.32
33 14 0.38
34 11 0.30
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:81670987 original size:29 final size:29
Alignment explanation
Indices: 81670945--81671000 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
81670935 TGCCATAGTG
*
81670945 TCTTCCAACTATGGTCTTATTCATTTCTA
1 TCTTCCAACCATGGTCTTATTCATTTCTA
*
81670974 TCTTTCAACCATGGTCTTATTCATTTC
1 TCTTCCAACCATGGTCTTATTCATTTC
81671001 CCAACATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.20, C:0.25, G:0.07, T:0.48
Consensus pattern (29 bp):
TCTTCCAACCATGGTCTTATTCATTTCTA
Found at i:81671025 original size:46 final size:46
Alignment explanation
Indices: 81670972--81671081 Score: 184
Period size: 46 Copynumber: 2.4 Consensus size: 46
81670962 TATTCATTTC
81670972 TATCTTTCAACCATGGTCTTATTCATTTCCCAACATGTTGCCATGG
1 TATCTTTCAACCATGGTCTTATTCATTTCCCAACATGTTGCCATGG
***
81671018 TATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGG
1 TATCTTTCAACCATGGTCTTATTCATTTCCCAACATGTTGCCATGG
*
81671064 TATCTTTCAACCGTGGTC
1 TATCTTTCAACCATGGTC
81671082 ATATCTGAAT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 60 1.00
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.41
Consensus pattern (46 bp):
TATCTTTCAACCATGGTCTTATTCATTTCCCAACATGTTGCCATGG
Found at i:81671291 original size:33 final size:33
Alignment explanation
Indices: 81671142--81671295 Score: 120
Period size: 33 Copynumber: 4.7 Consensus size: 33
81671132 TCTAGTATGA
* * *
81671142 TGCCATAGTCCAACTATGGTCTTACACATGTAT
1 TGCCATAGCCCAGCTATGGTCTTACACATATAT
* * *
81671175 TG--ATGGCCCAGCTATGGTCTTACAC-TCGTAG
1 TGCCATAGCCCAGCTATGGTCTTACACAT-ATAT
* * * * *
81671206 TGCCAAATCCCAGATATGGTCTTATCA-TTAGGAT
1 TGCCATAGCCCAGCTATGGTCTTA-CACATA-TAT
*
81671240 T-CCATAGCCTAGCTATGGTCTTACACATATAT
1 TGCCATAGCCCAGCTATGGTCTTACACATATAT
* *
81671272 TGCCATGGCCCAGCCATGGTCTTA
1 TGCCATAGCCCAGCTATGGTCTTA
81671296 TCCGTCAATT
Statistics
Matches: 93, Mismatches: 20, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
30 1 0.01
31 25 0.27
32 5 0.05
33 57 0.61
34 5 0.05
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (33 bp):
TGCCATAGCCCAGCTATGGTCTTACACATATAT
Found at i:81689900 original size:40 final size:40
Alignment explanation
Indices: 81689845--81690026 Score: 314
Period size: 40 Copynumber: 4.6 Consensus size: 40
81689835 TATTCGGATG
81689845 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
81689885 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
81689925 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
81689965 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
81690005 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
81690027 TACTTGGGTT
Statistics
Matches: 137, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 14 0.10
40 121 0.88
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:81695967 original size:27 final size:26
Alignment explanation
Indices: 81695936--81696113 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
81695926 TAAATTGTAC
81695936 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
81695963 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
81695989 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
81696017 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
81696045 AGCACTAAGTGTGCGATTGGATTACGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* *
81696072 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
81696099 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81696114 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
26 3 0.02
27 98 0.77
28 27 0.21
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:81696077 original size:82 final size:81
Alignment explanation
Indices: 81695937--81696092 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
81695927 AAATTGTACA
* *
81695937 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
81696002 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* * *
81696018 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTGGATTACG-TAGCACTAAG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAAT-GAATACGAT-GCACTAAG
*
81696081 TGTGCGAGTTGA
63 TGTGCGAATTGA
81696093 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81696104 original size:82 final size:81
Alignment explanation
Indices: 81695933--81696113 Score: 213
Period size: 82 Copynumber: 2.2 Consensus size: 81
81695923 GATTAAATTG
* *
81695933 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
81695998 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * * *
81696014 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTGGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAAT-GAATACGAT-GCAC
* **
81696077 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
81696096 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
81696114 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81696124 original size:27 final size:27
Alignment explanation
Indices: 81696018--81696124 Score: 65
Period size: 27 Copynumber: 3.9 Consensus size: 27
81696008 TGACCATGCG
* * * *
81696018 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
* **
81696046 GCACTAAGTGTGCGA-TTGGAT-TACGTA
1 GCACTAAGTGTGCGAGCTCAATATA--TA
* * *
81696073 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
81696100 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
81696125 CATTCGTGAA
Statistics
Matches: 65, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
25 1 0.02
26 4 0.06
27 39 0.60
28 19 0.29
29 2 0.03
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:81703855 original size:27 final size:26
Alignment explanation
Indices: 81703824--81704001 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
81703814 TAAATTGTAC
81703824 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
81703851 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
81703877 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
81703905 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
81703933 AGCACTAAGTGTGCGATTGGATTACGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* *
81703960 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
81703987 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81704002 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
26 3 0.02
27 98 0.77
28 27 0.21
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:81703965 original size:82 final size:81
Alignment explanation
Indices: 81703825--81703980 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
81703815 AAATTGTACA
* *
81703825 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
81703890 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* * *
81703906 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTGGATTACG-TAGCACTAAG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAAT-GAATACGAT-GCACTAAG
*
81703969 TGTGCGAGTTGA
63 TGTGCGAATTGA
81703981 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81703992 original size:82 final size:81
Alignment explanation
Indices: 81703821--81704001 Score: 213
Period size: 82 Copynumber: 2.2 Consensus size: 81
81703811 GATTAAATTG
* *
81703821 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
81703886 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * * *
81703902 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTGGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAAT-GAATACGAT-GCAC
* **
81703965 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
81703984 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
81704002 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81704012 original size:27 final size:27
Alignment explanation
Indices: 81703906--81704012 Score: 65
Period size: 27 Copynumber: 3.9 Consensus size: 27
81703896 TGACCATGCG
* * * *
81703906 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
* **
81703934 GCACTAAGTGTGCGA-TTGGAT-TACGTA
1 GCACTAAGTGTGCGAGCTCAATATA--TA
* * *
81703961 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
81703988 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
81704013 CATTCGTGAA
Statistics
Matches: 65, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
25 1 0.02
26 4 0.06
27 39 0.60
28 19 0.29
29 2 0.03
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:81708373 original size:11 final size:11
Alignment explanation
Indices: 81708357--81708404 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
81708347 CTTTATATAC
81708357 TAATAAAATAA
1 TAATAAAATAA
*
81708368 TAATAAAATATCT
1 TAATAAAATA--A
* *
81708381 TATTAAAATAT
1 TAATAAAATAA
81708392 TAATAAAATAA
1 TAATAAAATAA
81708403 TA
1 TA
81708405 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:81710046 original size:17 final size:17
Alignment explanation
Indices: 81710024--81710057 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
81710014 ACATATCATG
81710024 ATAAACTCCCGGTTGAA
1 ATAAACTCCCGGTTGAA
*
81710041 ATAAACTCCTGGTTGAA
1 ATAAACTCCCGGTTGAA
81710058 CCTTAGGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (17 bp):
ATAAACTCCCGGTTGAA
Found at i:81710201 original size:47 final size:46
Alignment explanation
Indices: 81710111--81710232 Score: 140
Period size: 47 Copynumber: 2.6 Consensus size: 46
81710101 TATGTGTGCT
* * *
81710111 AGTGTAAGACATGTCTGGGGCATGCATCAGCCAAATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAAATGACGAGAGCC
* *
81710157 AGTGTAAGACATGTTTGGGACAATGCATCAG-CATTAA-GACGAGAGCT
1 AGTGTAAGACATGTCTGGGAC-ATGCATCAGCCA--AATGACGAGAGCC
* *
81710204 AGTGTAAGACATGTCTGAGATATGCATCA
1 AGTGTAAGACATGTCTGGGACATGCATCA
81710233 ACCTCAAGAT
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
46 29 0.45
47 34 0.52
48 2 0.03
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCAAATGACGAGAGCC
Found at i:81710356 original size:93 final size:94
Alignment explanation
Indices: 81710248--81710473 Score: 287
Period size: 98 Copynumber: 2.4 Consensus size: 94
81710238 AAGATATGCA
* *
81710248 AGCCAGTGTAAGACCTATTTGGGACATGGCATCGGCTTG-ACAT-G-TGTCAGTGTAAGACCTAT
1 AGCCAGTGTAAGACCTGTTTGGGACATGGCATCGGCTTGAACATGGAAGTCAGTGTAAGACCTAT
* *
81710310 CTGGGACATGGCATCGACACCGATAGATGAG
66 CTAGGACATGGCATCGACACAGAT-G-TGAG
* *
81710341 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTTGATATATGGAAGTCAGTGTAAGACCT
1 AGCCAGTGTAAGACCTGTTTGGGACATGGCATCGG-CTTGA-ACATGGAAGTCAGTGTAAGACCT
** *
81710406 ATCTAGGACATGGCATCGACTTAGATGTGTG
64 ATCTAGGACATGGCATCGACACAGATGTGAG
* *
81710437 AGCCAGTGTAAGACCATGTTTGGAATATGGCATCGGC
1 AGCCAGTGTAAGACC-TGTTTGGGACATGGCATCGGC
81710474 ATCGTACCCT
Statistics
Matches: 115, Mismatches: 12, Indels: 9
0.85 0.09 0.07
Matches are distributed among these distances:
93 33 0.29
94 4 0.03
96 22 0.19
97 19 0.17
98 37 0.32
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (94 bp):
AGCCAGTGTAAGACCTGTTTGGGACATGGCATCGGCTTGAACATGGAAGTCAGTGTAAGACCTAT
CTAGGACATGGCATCGACACAGATGTGAG
Found at i:81710362 original size:49 final size:47
Alignment explanation
Indices: 81710248--81710451 Score: 184
Period size: 49 Copynumber: 4.3 Consensus size: 47
81710238 AAGATATGCA
* * ** *
81710248 AGCCAGTGTAAGACCTATTTGGGACATGGCATCGGCTTG--ACAT-G
1 AGCCAGTGTAAGACCTATCTGGGACATGGCATCGACCAGATAGATGG
* * *
81710292 TGTCAGTGTAAGACCTATCTGGGACATGGCATCGACACCGATAGATGAG
1 AGCCAGTGTAAGACCTATCTGGGACATGGCATCGAC-CAGATAGATG-G
* * * *
81710341 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTTGATATATGG
1 AGCCAGTGTAAGACCTATCTGGGACATGGCATCGACC-AGATAGATGG
* * *
81710389 AAGTCAGTGTAAGACCTATCTAGGACATGGCATCGACTTAGAT-G-TGTG
1 -AGCCAGTGTAAGACCTATCTGGGACATGGCATCGAC-CAGATAGATG-G
81710437 AGCCAGTGTAAGACC
1 AGCCAGTGTAAGACC
81710452 ATGTTTGGAA
Statistics
Matches: 130, Mismatches: 21, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
44 32 0.25
45 1 0.01
47 19 0.15
48 3 0.02
49 75 0.58
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (47 bp):
AGCCAGTGTAAGACCTATCTGGGACATGGCATCGACCAGATAGATGG
Found at i:81730639 original size:26 final size:26
Alignment explanation
Indices: 81730610--81730717 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
81730600 TGGTACAAAT
81730610 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81730636 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81730662 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81730688 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81730714 TGAT
1 TGAT
81730718 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81732250 original size:26 final size:25
Alignment explanation
Indices: 81732198--81732250 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 25
81732188 TTTACAGTTT
81732198 TACCCCTAGTAGGTAAATTACCGAAA
1 TACCCCTAG-AGGTAAATTACCGAAA
*
81732224 TACCCCTAG-GGTTAAATTCACCTAAA
1 TACCCCTAGAGG-TAAATT-ACCGAAA
81732250 T
1 T
81732251 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 2 0.08
25 6 0.25
26 16 0.67
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (25 bp):
TACCCCTAGAGGTAAATTACCGAAA
Found at i:81736161 original size:11 final size:11
Alignment explanation
Indices: 81736145--81736178 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
81736135 TCCACGGTTT
81736145 AGAAATTTTTG
1 AGAAATTTTTG
81736156 AGAAATTTTTG
1 AGAAATTTTTG
*
81736167 AGAAATCTTTG
1 AGAAATTTTTG
81736178 A
1 A
81736179 TAAACCTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (11 bp):
AGAAATTTTTG
Found at i:81736188 original size:22 final size:22
Alignment explanation
Indices: 81736145--81736188 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
81736135 TCCACGGTTT
* **
81736145 AGAAATTTTTGAGAAATTTTTG
1 AGAAATCTTTGAGAAACCTTTG
*
81736167 AGAAATCTTTGATAAACCTTTG
1 AGAAATCTTTGAGAAACCTTTG
81736189 GTAAAAACTG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (22 bp):
AGAAATCTTTGAGAAACCTTTG
Found at i:81739939 original size:12 final size:12
Alignment explanation
Indices: 81739922--81739946 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81739912 TAGTTAATTC
81739922 TAATTTTCTTTT
1 TAATTTTCTTTT
81739934 TAATTTTCTTTT
1 TAATTTTCTTTT
81739946 T
1 T
81739947 TTCAAAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (12 bp):
TAATTTTCTTTT
Found at i:81746113 original size:19 final size:19
Alignment explanation
Indices: 81746089--81746129 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
81746079 AAATCAGCTT
81746089 AACTTGTAACTCAGCCAAC
1 AACTTGTAACTCAGCCAAC
81746108 AACTTGTAACTCAGCCAAC
1 AACTTGTAACTCAGCCAAC
81746127 AAC
1 AAC
81746130 CCACCATCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.39, C:0.32, G:0.10, T:0.20
Consensus pattern (19 bp):
AACTTGTAACTCAGCCAAC
Found at i:81746523 original size:8 final size:8
Alignment explanation
Indices: 81746503--81746536 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
81746493 TAACCGTGAC
81746503 CAATGTG-
1 CAATGTGT
81746510 CAATGTGT
1 CAATGTGT
81746518 CAATGTGT
1 CAATGTGT
81746526 CAATGTGT
1 CAATGTGT
81746534 CAA
1 CAA
81746537 AACTAACTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (8 bp):
CAATGTGT
Found at i:81752495 original size:25 final size:25
Alignment explanation
Indices: 81752439--81752505 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 25
81752429 TATGGCTTTT
* * **
81752439 ATGAGATTCCCGTTATATAGCCCGG
1 ATGAGCTTCCCGTTATACAGCCCAC
* *
81752464 ATAAGCTTCCCGTTATACAGCTCAC
1 ATGAGCTTCCCGTTATACAGCCCAC
*
81752489 ATGAGCTTCCTGTTATA
1 ATGAGCTTCCCGTTATA
81752506 TGGCTCGAGA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATACAGCCCAC
Found at i:81754800 original size:14 final size:14
Alignment explanation
Indices: 81754783--81754810 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
81754773 TAGTGTTTCC
81754783 AAAAACCATTTGTT
1 AAAAACCATTTGTT
81754797 AAAAACCATTTGTT
1 AAAAACCATTTGTT
81754811 TGCGTAAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (14 bp):
AAAAACCATTTGTT
Found at i:81762355 original size:49 final size:49
Alignment explanation
Indices: 81762287--81762431 Score: 175
Period size: 49 Copynumber: 3.0 Consensus size: 49
81762277 TTGTAACTCA
* ** *
81762287 GGCTCCCAATTCATGGTGGTTATATGGTCACGAGTTGAAGTATAACTAG
1 GGCTCCCAATTGACAGTGGTTATACGGTCACGAGTTGAAGTATAACTAG
** *
81762336 GGCTCCTGATTGACAGTGGTTATACGGTCAC-AGGTTGAAATATAACTAG
1 GGCTCCCAATTGACAGTGGTTATACGGTCACGA-GTTGAAGTATAACTAG
* * * *
81762385 GGCTCCCAATTGACAATGGTTATGCAGTCACGAGTTGAAGTGTAACT
1 GGCTCCCAATTGACAGTGGTTATACGGTCACGAGTTGAAGTATAACT
81762432 CGAGCCCCAG
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
48 1 0.01
49 78 0.98
50 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (49 bp):
GGCTCCCAATTGACAGTGGTTATACGGTCACGAGTTGAAGTATAACTAG
Found at i:81765492 original size:13 final size:14
Alignment explanation
Indices: 81765470--81765499 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
81765460 CTTGAGTTAG
81765470 AAAATGAAAAAATA
1 AAAATGAAAAAATA
81765484 AAAAT-AAAAAATA
1 AAAATGAAAAAATA
81765497 AAA
1 AAA
81765500 GCATTGAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.13
Consensus pattern (14 bp):
AAAATGAAAAAATA
Found at i:81777212 original size:19 final size:18
Alignment explanation
Indices: 81777177--81777212 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
81777167 GAAGCAAGCA
*
81777177 ATGATTGAAGAAATCAGG
1 ATGATTGAAAAAATCAGG
81777195 ATGATTGAAAAGAATCAG
1 ATGATTGAAAA-AATCAG
81777213 ACCTGGAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.47, C:0.06, G:0.25, T:0.22
Consensus pattern (18 bp):
ATGATTGAAAAAATCAGG
Found at i:81781011 original size:13 final size:13
Alignment explanation
Indices: 81780993--81781018 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81780983 AATCAGATAC
81780993 GATTCCTGGTGAG
1 GATTCCTGGTGAG
81781006 GATTCCTGGTGAG
1 GATTCCTGGTGAG
81781019 CACTTAGGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.38, T:0.31
Consensus pattern (13 bp):
GATTCCTGGTGAG
Found at i:81785431 original size:22 final size:23
Alignment explanation
Indices: 81785389--81785432 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
81785379 CTAGAATTTA
81785389 TAAAAAATTTGAGAAAGTTTAAT
1 TAAAAAATTTGAGAAAGTTTAAT
* *
81785412 TAAAATATTTGA-AAATTTTAA
1 TAAAAAATTTGAGAAAGTTTAA
81785433 AGTGTATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (23 bp):
TAAAAAATTTGAGAAAGTTTAAT
Found at i:81799283 original size:15 final size:15
Alignment explanation
Indices: 81799265--81799299 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
81799255 TCCATTTTCG
81799265 TTTTTTTTATTTTGT
1 TTTTTTTTATTTTGT
*
81799280 TTTTCTTTATTTTGT
1 TTTTTTTTATTTTGT
81799295 TTTTT
1 TTTTT
81799300 AGTTTTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.06, C:0.03, G:0.06, T:0.86
Consensus pattern (15 bp):
TTTTTTTTATTTTGT
Found at i:81799317 original size:24 final size:23
Alignment explanation
Indices: 81799279--81799350 Score: 81
Period size: 24 Copynumber: 3.0 Consensus size: 23
81799269 TTTTATTTTG
*
81799279 TTTTTCTTTATTTTGTTTTTTAGTT
1 TTTTTATTTA-TTTGTTTTTTA-TT
**
81799304 TTTTTATTTATTTGTCCTTTATT
1 TTTTTATTTATTTGTTTTTTATT
*
81799327 TGTTTTATTTATTTGTTTATTATT
1 T-TTTTATTTATTTGTTTTTTATT
81799351 GGTTTTATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
23 3 0.08
24 28 0.70
25 9 0.22
ACGTcount: A:0.12, C:0.04, G:0.07, T:0.76
Consensus pattern (23 bp):
TTTTTATTTATTTGTTTTTTATT
Found at i:81799355 original size:24 final size:24
Alignment explanation
Indices: 81799270--81799358 Score: 76
Period size: 24 Copynumber: 3.7 Consensus size: 24
81799260 TTTCGTTTTT
* *
81799270 TTTATT-TTGTTTTTCTTTATTTTG
1 TTTATTATTGGTTTTATTTA-TTTG
* *
81799294 TTTTTTAGTT-TTTTTATTTATTTG
1 TTTATTA-TTGGTTTTATTTATTTG
* *
81799318 TCCT-TTATTTGTTTTATTTATTTG
1 T-TTATTATTGGTTTTATTTATTTG
81799342 TTTATTATTGGTTTTAT
1 TTTATTATTGGTTTTAT
81799359 AATATTTAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
23 3 0.06
24 39 0.72
25 10 0.19
26 2 0.04
ACGTcount: A:0.12, C:0.03, G:0.09, T:0.75
Consensus pattern (24 bp):
TTTATTATTGGTTTTATTTATTTG
Found at i:81799357 original size:12 final size:12
Alignment explanation
Indices: 81799290--81799358 Score: 56
Period size: 11 Copynumber: 5.8 Consensus size: 12
81799280 TTTTCTTTAT
81799290 TTTGTTTT-TTA
1 TTTGTTTTATTA
81799301 GTTT-TTTTATTTA
1 -TTTGTTTTA-TTA
**
81799314 TTTGTCCT-TTA
1 TTTGTTTTATTA
81799325 TTTGTTTTATTTA
1 TTTGTTTTA-TTA
81799338 TTTG-TTTATTA
1 TTTGTTTTATTA
*
81799349 TTGGTTTTAT
1 TTTGTTTTAT
81799359 AATATTTAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
11 19 0.41
12 15 0.33
13 12 0.26
ACGTcount: A:0.13, C:0.03, G:0.10, T:0.74
Consensus pattern (12 bp):
TTTGTTTTATTA
Found at i:81799416 original size:22 final size:22
Alignment explanation
Indices: 81799344--81799416 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
81799334 TTTATTTGTT
*
81799344 TATTATTGGTTTTATAATATTTAAA
1 TATTATT--TTTTAAAAT-TTTAAA
* * *
81799369 T-GTATATTTTAAATGTTTTATAA
1 TATTATTTTTTAAA-ATTTTA-AA
81799392 TATTATTTTTTAAAATTTTAAA
1 TATTATTTTTTAAAATTTTAAA
81799414 TAT
1 TAT
81799417 GTTATGAATA
Statistics
Matches: 38, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
22 15 0.39
23 9 0.24
24 13 0.34
25 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (22 bp):
TATTATTTTTTAAAATTTTAAA
Found at i:81800398 original size:136 final size:136
Alignment explanation
Indices: 81800154--81800420 Score: 525
Period size: 136 Copynumber: 2.0 Consensus size: 136
81800144 TGTGAGTAAA
81800154 AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAA
1 AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAA
*
81800219 ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTGCATT
66 ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTACATT
81800284 CACTTC
131 CACTTC
81800290 AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAA
1 AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAA
81800355 ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTACATT
66 ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTACATT
81800420 C
131 C
81800421 CCTGAAGTGA
Statistics
Matches: 130, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
136 130 1.00
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (136 bp):
AATACTTACTTGTCATGAACTTTGGAATATTCACCCTGTCTATGATAATTTCATATCAGTGTAAA
ATTTGAGATGAAATAAAAAATCAATGGAGGCTTTTAGAAGCCTATCCTACTAGATTTATTACATT
CACTTC
Found at i:81803733 original size:20 final size:21
Alignment explanation
Indices: 81803710--81803762 Score: 85
Period size: 20 Copynumber: 2.7 Consensus size: 21
81803700 TTTTATAACA
81803710 AAATATATATTTTTAAA-TTT
1 AAATATATATTTTTAAATTTT
81803730 AAATAT-TATTTTTAAATTTT
1 AAATATATATTTTTAAATTTT
81803750 AAATATA-ATTTTT
1 AAATATATATTTTT
81803763 TAATATTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 10 0.32
20 21 0.68
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
AAATATATATTTTTAAATTTT
Found at i:81803780 original size:20 final size:21
Alignment explanation
Indices: 81803710--81803774 Score: 73
Period size: 20 Copynumber: 3.1 Consensus size: 21
81803700 TTTTATAACA
81803710 AAATAT-ATATTTTTAAATT-T
1 AAATATAAT-TTTTTAAATTAT
* *
81803730 AAATATTA-TTTTTAAATTTT
1 AAATATAATTTTTTAAATTAT
81803750 AAATATAATTTTTTAATATTAT
1 AAATATAATTTTTTAA-ATTAT
81803772 AAA
1 AAA
81803775 AAATTTAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 10 0.26
20 14 0.36
21 8 0.21
22 7 0.18
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
AAATATAATTTTTTAAATTAT
Found at i:81803876 original size:23 final size:23
Alignment explanation
Indices: 81803818--81803906 Score: 74
Period size: 22 Copynumber: 3.8 Consensus size: 23
81803808 CTTTCAAAAT
*
81803818 TATTATTTGGTTTATAATATTTTAAA
1 TATTATTT--TTTA-AAAATTTTAAA
* *
81803844 T-GTATATTTTAAAAATTTTAAA
1 TATTATTTTTTAAAAATTTTAAA
*
81803866 TATTATTTTTT-AAATTTTTAAA
1 TATTATTTTTTAAAAATTTTAAA
* *
81803888 AATTATTATTTTTAAAATT
1 TATTATT-TTTTAAAAATT
81803907 ATTTTTAAAT
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
22 27 0.52
23 15 0.29
24 5 0.10
25 4 0.08
26 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.57
Consensus pattern (23 bp):
TATTATTTTTTAAAAATTTTAAA
Found at i:81803904 original size:15 final size:16
Alignment explanation
Indices: 81803879--81803909 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
81803869 TATTTTTTAA
81803879 ATTTTTAAAAATTATT
1 ATTTTTAAAAATTATT
81803895 ATTTTT-AAAATTATT
1 ATTTTTAAAAATTATT
81803910 TTTAAATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTTTTAAAAATTATT
Found at i:81803909 original size:12 final size:12
Alignment explanation
Indices: 81803859--81803951 Score: 59
Period size: 12 Copynumber: 7.8 Consensus size: 12
81803849 ATTTTAAAAA
81803859 TTTTAAATATTAT
1 TTTTAAA-ATTAT
*
81803872 TTTTTAAATT-T
1 TTTTAAAATTAT
**
81803883 TTAAAAATTATTAT
1 TTTTAAA--ATTAT
81803897 TTTTAAAATTAT
1 TTTTAAAATTAT
81803909 TTTT-AAA-TAT
1 TTTTAAAATTAT
* * *
81803919 ATTCAAACTT-T
1 TTTTAAAATTAT
*
81803930 TTTTTAAATTAT
1 TTTTAAAATTAT
*
81803942 ATTTAAAATT
1 TTTTAAAATT
81803952 TTAAAAAATA
Statistics
Matches: 59, Mismatches: 15, Indels: 13
0.68 0.17 0.15
Matches are distributed among these distances:
10 5 0.08
11 17 0.29
12 22 0.37
13 9 0.15
14 6 0.10
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (12 bp):
TTTTAAAATTAT
Found at i:81803934 original size:22 final size:23
Alignment explanation
Indices: 81803892--81803953 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
81803882 TTTAAAAATT
* * *
81803892 ATTATTTTTAAAATTATTTTTAA
1 ATTATATTCAAAATTTTTTTTAA
*
81803915 A-TATATTCAAACTTTTTTTTAA
1 ATTATATTCAAAATTTTTTTTAA
*
81803937 ATTATATTTAAAATTTT
1 ATTATATTCAAAATTTT
81803954 AAAAAATAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
22 18 0.56
23 14 0.44
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (23 bp):
ATTATATTCAAAATTTTTTTTAA
Found at i:81810225 original size:9 final size:8
Alignment explanation
Indices: 81810210--81810262 Score: 52
Period size: 8 Copynumber: 6.1 Consensus size: 8
81810200 ATAAAATATT
81810210 ATAAAAAA
1 ATAAAAAA
81810218 ATTAAAAAAA
1 A-T-AAAAAA
81810228 ATTAAAAAA
1 A-TAAAAAA
*
81810237 GATAAACAA
1 -ATAAAAAA
81810246 ATAAAAAA
1 ATAAAAAA
*
81810254 ACAAAAAA
1 ATAAAAAA
81810262 A
1 A
81810263 GGACAAATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
8 16 0.41
9 13 0.33
10 10 0.26
ACGTcount: A:0.81, C:0.04, G:0.02, T:0.13
Consensus pattern (8 bp):
ATAAAAAA
Found at i:81810225 original size:10 final size:10
Alignment explanation
Indices: 81810202--81810236 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
81810192 AAATATACAT
*
81810202 AAAATATTATA
1 AAAAAATTA-A
81810213 AAAAAATTAA
1 AAAAAATTAA
81810223 AAAAAATTAA
1 AAAAAATTAA
81810233 AAAA
1 AAAA
81810237 GATAAACAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 15 0.65
11 8 0.35
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (10 bp):
AAAAAATTAA
Found at i:81810389 original size:23 final size:22
Alignment explanation
Indices: 81810359--81810407 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 22
81810349 AACAGTTTAA
* *
81810359 AAAAATAATTTTTAAAATTTTTT
1 AAAAATAATATTTAAAA-ATTTT
81810382 AAAAATAATATTTAAAAATTTT
1 AAAAATAATATTTAAAAATTTT
81810404 AAAA
1 AAAA
81810408 TATACATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAAATAATATTTAAAAATTTT
Found at i:81810401 original size:24 final size:23
Alignment explanation
Indices: 81810359--81810403 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
81810349 AACAGTTTAA
*
81810359 AAAAATAATTTTTAAAATTTTTT
1 AAAAATAATTTTAAAAATTTTTT
81810382 AAAAATAATATTTAAAAATTTT
1 AAAAATAAT-TTTAAAAATTTT
81810404 AAAATATACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
AAAAATAATTTTAAAAATTTTTT
Found at i:81810420 original size:22 final size:22
Alignment explanation
Indices: 81810378--81810420 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
81810368 TTTTAAAATT
* *
81810378 TTTTAAAAATAATATTTAAAAA
1 TTTTAAAAATAACATTAAAAAA
81810400 TTTT-AAAATATACATTAAAAA
1 TTTTAAAAATA-ACATTAAAAA
81810421 TACTATAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
TTTTAAAAATAACATTAAAAAA
Found at i:81810499 original size:21 final size:22
Alignment explanation
Indices: 81810476--81810530 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
81810466 ATATATTTTA
81810476 AATATTTTATAATATTAAAAAAAT
1 AATA-TTTA-AATATTAAAAAAAT
*
81810500 AATATTTAAAT-TTTAAAAAAT
1 AATATTTAAATATTAAAAAAAT
*
81810521 AATTTTTAAA
1 AATATTTAAA
81810531 AAATATATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 18 0.62
22 3 0.10
23 4 0.14
24 4 0.14
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
AATATTTAAATATTAAAAAAAT
Found at i:81810523 original size:35 final size:35
Alignment explanation
Indices: 81810484--81810567 Score: 125
Period size: 35 Copynumber: 2.4 Consensus size: 35
81810474 TAAATATTTT
81810484 ATAATATTAAAAAAATAATATTT-AAATTTTAAAAA
1 ATAATATTAAAAAAAT-ATATTTAAAATTTTAAAAA
* *
81810519 ATAATTTTTAAAAAATATATTTAAAATTTTAAAAA
1 ATAATATTAAAAAAATATATTTAAAATTTTAAAAA
*
81810554 ATAATATTATAAAA
1 ATAATATTAAAAAA
81810568 CATTTAAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
34 6 0.14
35 37 0.86
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (35 bp):
ATAATATTAAAAAAATATATTTAAAATTTTAAAAA
Found at i:81810529 original size:14 final size:13
Alignment explanation
Indices: 81810510--81810544 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
81810500 AATATTTAAA
81810510 TTTTAAAAAATAAT
1 TTTTAAAAAAT-AT
81810524 TTTTAAAAAATAT
1 TTTTAAAAAATAT
*
81810537 ATTTAAAA
1 TTTTAAAA
81810545 TTTTAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 9 0.45
14 11 0.55
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
TTTTAAAAAATAT
Found at i:81810553 original size:22 final size:21
Alignment explanation
Indices: 81810524--81810590 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 21
81810514 AAAAAATAAT
81810524 TTTTAAAAAATATATTTAAAA
1 TTTTAAAAAATATATTTAAAA
81810545 TTTTAAAAAATAATATTATAAAA
1 TTTTAAAAAAT-ATATT-TAAAA
* * *
81810568 CATTTAAAATATACATTTAAAA
1 -TTTTAAAAAATATATTTAAAA
81810590 T
1 T
81810591 ATTACAAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
21 11 0.28
22 10 0.26
23 9 0.23
24 9 0.23
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (21 bp):
TTTTAAAAAATATATTTAAAA
Found at i:81810583 original size:13 final size:13
Alignment explanation
Indices: 81810567--81810592 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81810557 ATATTATAAA
81810567 ACATTTAAAATAT
1 ACATTTAAAATAT
81810580 ACATTTAAAATAT
1 ACATTTAAAATAT
81810593 TACAAATAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
ACATTTAAAATAT
Found at i:81810626 original size:13 final size:15
Alignment explanation
Indices: 81810594--81810631 Score: 53
Period size: 13 Copynumber: 2.6 Consensus size: 15
81810584 TTAAAATATT
81810594 ACAAATAGAATAATAA
1 ACAAATA-AATAATAA
81810610 ACAAATAAAT-A-AA
1 ACAAATAAATAATAA
81810623 ACAAATAAA
1 ACAAATAAA
81810632 GGACAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 11 0.50
14 1 0.05
15 3 0.14
16 7 0.32
ACGTcount: A:0.74, C:0.08, G:0.03, T:0.16
Consensus pattern (15 bp):
ACAAATAAATAATAA
Found at i:81810630 original size:24 final size:23
Alignment explanation
Indices: 81810609--81810655 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
81810599 TAGAATAATA
81810609 AACAAATAAATAAAACAAATAAAG
1 AACAAATAAA-AAAACAAATAAAG
*
81810633 GACAAATAAAAAAACTAAA-AAAG
1 AACAAATAAAAAAAC-AAATAAAG
81810656 TAAATAAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.74, C:0.09, G:0.06, T:0.11
Consensus pattern (23 bp):
AACAAATAAAAAAACAAATAAAG
Found at i:81815101 original size:13 final size:13
Alignment explanation
Indices: 81815085--81815109 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81815075 GCCACATCAA
81815085 CTAGTTAACTTGG
1 CTAGTTAACTTGG
81815098 CTAGTTAACTTG
1 CTAGTTAACTTG
81815110 CCACATCAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (13 bp):
CTAGTTAACTTGG
Found at i:81819734 original size:40 final size:39
Alignment explanation
Indices: 81819679--81819829 Score: 196
Period size: 40 Copynumber: 3.8 Consensus size: 39
81819669 GGATATAACT
* *
81819679 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT--AGTA
* *
81819719 ACTCGCACAATTGCCTTTGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-TTAGTA
*
81819759 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGTA
* * *
81819798 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
81819830 TTATCATCCA
Statistics
Matches: 99, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 34 0.34
40 63 0.64
42 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGTA
Found at i:81823118 original size:29 final size:29
Alignment explanation
Indices: 81823076--81823175 Score: 148
Period size: 29 Copynumber: 3.5 Consensus size: 29
81823066 CATGAAATTG
*
81823076 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTTCAAATTGTATA
*
81823105 GCACTAAGTGTGCGAGTTCAAGTTGTATA
1 GCACTAAGTGTGCGAGTTCAAATTGTATA
* *
81823134 GCACTAAGTGTGCGAGTTC-GATTATATA
1 GCACTAAGTGTGCGAGTTCAAATTGTATA
*
81823162 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
81823176 GACTTACTAT
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
28 19 0.29
29 46 0.71
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCAAATTGTATA
Found at i:81831071 original size:39 final size:39
Alignment explanation
Indices: 81830978--81831079 Score: 127
Period size: 39 Copynumber: 2.6 Consensus size: 39
81830968 TACTCGCTCA
* *
81830978 AATGCCTTCGGGACATAGCCC-GATTAGAGTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATTA-AGTAACTAGCAC
* *
81831017 AATTGCCTTCGGGACTTAGCCCGGATT-AGTCACTAGCGC
1 AA-TGCCTTCGGGACTTAGCCCGGATTAAGTAACTAGCAC
81831056 AGATGCCTTCGGGACTTAGCCCGG
1 A-ATGCCTTCGGGACTTAGCCCGG
81831080 TTATCATCCA
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
39 33 0.59
40 19 0.34
41 4 0.07
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATTAAGTAACTAGCAC
Found at i:81837778 original size:47 final size:47
Alignment explanation
Indices: 81837726--81838517 Score: 1197
Period size: 47 Copynumber: 16.6 Consensus size: 47
81837716 GATAATTGTG
* *
81837726 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
81837773 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
81837820 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
81837869 ATGTGAAAATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
81837916 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGTCAATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
81837965 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
81838014 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
81838061 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
81838110 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
81838159 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
81838206 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
81838255 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
81838302 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
81838349 ATGTGAAAGTGGATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGT-G-TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* **
81838398 ATGTGAAAGTGCATATATGTGATAAGGCCTAATAACCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
81838445 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
81838492 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
81838518 TCCCGAAGGG
Statistics
Matches: 693, Mismatches: 42, Indels: 20
0.92 0.06 0.03
Matches are distributed among these distances:
47 371 0.54
48 2 0.00
49 320 0.46
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:81837833 original size:96 final size:96
Alignment explanation
Indices: 81837726--81838517 Score: 1262
Period size: 96 Copynumber: 8.3 Consensus size: 96
81837716 GATAATTGTG
81837726 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
81837789 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
*
81837820 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
81837885 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
* * *
81837916 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGTCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
* *
81837981 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
81838014 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
81838077 ATATGTGATAAGGCCGAATGGCCAATGTGATGA
64 ATATGTGATAAGGCCGAATGGCCAATGTGATGA
81838110 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
81838175 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
81838206 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
81838271 ATGTGATAAGGCCTAATGGCCGATATGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
*
81838302 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT-G-TAT
* *
81838365 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCGAATGGCCAATGTGATGA
* **
81838398 ATGTGAAAGTG--CATATATGTGATAAGGCCTAATAACCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * *
81838461 ATGTGACAGGGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
81838492 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
81838518 TCCCGAAGGG
Statistics
Matches: 659, Mismatches: 29, Indels: 20
0.93 0.04 0.03
Matches are distributed among these distances:
94 100 0.15
95 5 0.01
96 464 0.70
98 90 0.14
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:81837882 original size:145 final size:144
Alignment explanation
Indices: 81837726--81838517 Score: 1299
Period size: 145 Copynumber: 5.5 Consensus size: 144
81837716 GATAATTGTG
* * * *
81837726 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATA
81837790 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
81837855 GGCCGATGTGATGA
131 GGCCGATGTGATGA
*
81837869 ATGTGAAAATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATATAT
*
81837934 ATGTGATAAGGCCGAATGGTCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
81837999 TGGCCGATGTGATGA
130 TGGCCGATGTGATGA
81838014 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATATAT
81838079 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
81838144 TGGCCGATGTGATGA
130 TGGCCGATGTGATGA
81838159 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATATAT
* *
81838224 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
*
81838287 TGGCCGATATGATGA
130 TGGCCGATGTGATGA
* * *
81838302 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT-GATATAT
* * *
81838367 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--CATATATGTGATAAGGCCTAA
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
**
81838430 TAACCGATGTGATGA
130 TGGCCGATGTGATGA
* * * * * *
81838445 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG-TATAAA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATA
81838509 TGTGATAAG
66 TGTGATAAG
81838518 TCCCGAAGGG
Statistics
Matches: 619, Mismatches: 27, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
141 14 0.02
142 1 0.00
143 271 0.44
144 1 0.00
145 332 0.54
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (144 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
GGCCGATGTGATGA
Found at i:81837938 original size:27 final size:27
Alignment explanation
Indices: 81837907--81837989 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 27
81837897 CGAATGGCCA
81837907 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
* * * *
81837934 ATGTGAT-AAGGCCG-AA-TG-GT-CA-
1 ATGTGATGAATG-TGAAAGTGTATATAT
81837956 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
81837983 ATGTGAT
1 ATGTGAT
81837990 AAGGCCTAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
22 8 0.20
23 6 0.15
24 3 0.07
25 3 0.07
26 6 0.15
27 15 0.37
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTATATAT
Found at i:81842978 original size:18 final size:18
Alignment explanation
Indices: 81842955--81842989 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
81842945 GTAGGTTTCC
*
81842955 AAAAATAGAAATAGAAAT
1 AAAAATAAAAATAGAAAT
*
81842973 AAAAATAAAAATGGAAA
1 AAAAATAAAAATAGAAA
81842990 CTTGTAATCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.14
Consensus pattern (18 bp):
AAAAATAAAAATAGAAAT
Found at i:81850314 original size:16 final size:16
Alignment explanation
Indices: 81850290--81850327 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
81850280 ATTTAGCCAT
81850290 TTTTATTTTTA-TTGTAA
1 TTTT-TTTTTAGTT-TAA
81850307 TTTTTTTTTAGTTTAA
1 TTTTTTTTTAGTTTAA
81850323 TTTTT
1 TTTTT
81850328 GCATTCTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.76
Consensus pattern (16 bp):
TTTTTTTTTAGTTTAA
Found at i:81853171 original size:23 final size:23
Alignment explanation
Indices: 81853084--81853172 Score: 106
Period size: 23 Copynumber: 3.6 Consensus size: 23
81853074 TTGTGCTATT
81853084 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGA-T-TA-TA
**
81853111 TTCTGGTGTGTTTTAAAGGATTATA
1 --CTGGTGTGTTTTGGAGGATTATA
81853136 CTGGTGTGTTTTGGAGGATTATA
1 CTGGTGTGTTTTGGAGGATTATA
81853159 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
81853173 TTGGACATTT
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
23 35 0.62
25 2 0.04
26 2 0.04
27 1 0.02
28 3 0.05
29 13 0.23
ACGTcount: A:0.17, C:0.04, G:0.31, T:0.47
Consensus pattern (23 bp):
CTGGTGTGTTTTGGAGGATTATA
Found at i:81853393 original size:23 final size:23
Alignment explanation
Indices: 81853363--81853449 Score: 76
Period size: 21 Copynumber: 4.0 Consensus size: 23
81853353 GCTTTACTGA
* *
81853363 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTGTGTGTCGTATT
*
81853386 TCAGGCACCTTGTGTGTCGCA--
1 TCAGGCACCTTGTGTGTCGTATT
* *
81853407 GCAGGCACCTCGTGTGTCG--TT
1 TCAGGCACCTTGTGTGTCGTATT
* *
81853428 TCAGGCA-CTTTTGTGTTGTATT
1 TCAGGCACCTTGTGTGTCGTATT
81853450 CTGATCAGGT
Statistics
Matches: 51, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
20 8 0.16
21 23 0.45
22 2 0.04
23 18 0.35
ACGTcount: A:0.14, C:0.22, G:0.26, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTTGTGTGTCGTATT
Found at i:81860792 original size:15 final size:15
Alignment explanation
Indices: 81860772--81860801 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
81860762 CTTTTTTTTC
81860772 CTTTTTCTTATTCTT
1 CTTTTTCTTATTCTT
81860787 CTTTTTCTTATTCTT
1 CTTTTTCTTATTCTT
81860802 ATACTTTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (15 bp):
CTTTTTCTTATTCTT
Found at i:81860872 original size:10 final size:11
Alignment explanation
Indices: 81860844--81860881 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
81860834 CTACTATTTC
81860844 TATTATTTTTAG
1 TATT-TTTTTAG
81860856 TATTTTTTTAG
1 TATTTTTTTAG
*
81860867 TATTTTTTTAC
1 TATTTTTTTAG
81860878 TATT
1 TATT
81860882 ACCTTTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
11 21 0.84
12 4 0.16
ACGTcount: A:0.21, C:0.03, G:0.05, T:0.71
Consensus pattern (11 bp):
TATTTTTTTAG
Found at i:81865502 original size:13 final size:13
Alignment explanation
Indices: 81865486--81865510 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81865476 TTTTTCAAGA
81865486 AAATTCTTTAATC
1 AAATTCTTTAATC
81865499 AAATTCTTTAAT
1 AAATTCTTTAAT
81865511 TGAACAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (13 bp):
AAATTCTTTAATC
Found at i:81867945 original size:16 final size:16
Alignment explanation
Indices: 81867920--81867950 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81867910 ATAATATCCC
81867920 CTAACAGTCAAATTCT
1 CTAACAGTCAAATTCT
*
81867936 CTAACGGTCAAATTC
1 CTAACAGTCAAATTC
81867951 CCAACGACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.26, G:0.10, T:0.29
Consensus pattern (16 bp):
CTAACAGTCAAATTCT
Found at i:81870749 original size:16 final size:16
Alignment explanation
Indices: 81870728--81870764 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
81870718 CTAAAACCCT
* *
81870728 CAAACAAAATCTTAAA
1 CAAACAAAACCCTAAA
81870744 CAAACAAAACCCTAAA
1 CAAACAAAACCCTAAA
81870760 CAAAC
1 CAAAC
81870765 CTTAAGGCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.62, C:0.27, G:0.00, T:0.11
Consensus pattern (16 bp):
CAAACAAAACCCTAAA
Found at i:81875079 original size:20 final size:20
Alignment explanation
Indices: 81875050--81875088 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
81875040 ATATTTTCTG
*
81875050 GTAAATCATTTTACAGAAAA
1 GTAAAACATTTTACAGAAAA
*
81875070 GTAAAACATTTTCCAGAAA
1 GTAAAACATTTTACAGAAA
81875089 TCATTTTACG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.13, G:0.10, T:0.28
Consensus pattern (20 bp):
GTAAAACATTTTACAGAAAA
Found at i:81875095 original size:14 final size:14
Alignment explanation
Indices: 81875072--81875111 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
81875062 ACAGAAAAGT
*
81875072 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
81875086 AAATCATTTTACGG
1 AAAACATTTTACAG
81875100 AAAACATTTTAC
1 AAAACATTTTAC
81875112 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:81876746 original size:9 final size:9
Alignment explanation
Indices: 81876715--81876765 Score: 57
Period size: 9 Copynumber: 5.7 Consensus size: 9
81876705 TTCATGCTGC
81876715 TCCTCTTGT
1 TCCTCTTGT
*
81876724 TCATCTTGT
1 TCCTCTTGT
* *
81876733 ACCTCCTGT
1 TCCTCTTGT
* *
81876742 TCCTCGTGA
1 TCCTCTTGT
81876751 TCCTCTTGT
1 TCCTCTTGT
81876760 TCCTCT
1 TCCTCT
81876766 ACATTTCCTC
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.06, C:0.35, G:0.12, T:0.47
Consensus pattern (9 bp):
TCCTCTTGT
Found at i:81886152 original size:43 final size:43
Alignment explanation
Indices: 81886090--81886247 Score: 196
Period size: 43 Copynumber: 3.7 Consensus size: 43
81886080 GTACAATATC
* *
81886090 ATATCCCAGATATGGTCTTACATGTTATCACATATCGATGCCA
1 ATATCCCAGACATGGTCTTACATGTAATCACATATCGATGCCA
* * * *
81886133 TTATCCCAGACA-GGCTCTTACACGTAATCGA-TTAACGATGCCA
1 ATATCCCAGACATGG-TCTTACATGTAATC-ACATATCGATGCCA
*
81886176 ATATCCCAGACATGGTCTTACATGTAATCACA-ATACAATGCCA
1 ATATCCCAGACATGGTCTTACATGTAATCACATAT-CGATGCCA
*
81886219 ATATCCCAGACATAGTCTTACATGTAATC
1 ATATCCCAGACATGGTCTTACATGTAATC
81886248 TCATCTCGGC
Statistics
Matches: 98, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
42 4 0.04
43 91 0.93
44 3 0.03
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.28
Consensus pattern (43 bp):
ATATCCCAGACATGGTCTTACATGTAATCACATATCGATGCCA
Found at i:81886238 original size:86 final size:86
Alignment explanation
Indices: 81886090--81886247 Score: 230
Period size: 86 Copynumber: 1.8 Consensus size: 86
81886080 GTACAATATC
* * * * *
81886090 ATATCCCAGATATGGTCTTACATGTTATCACATATCGATGCCATTATCCCAGACAGGCTCTTACA
1 ATATCCCAGACATGGTCTTACATGTAATCACATATCAATGCCAATATCCCAGACAAGCTCTTACA
81886155 CGTAATCGATTAACGATGCCA
66 CGTAATCGATTAACGATGCCA
81886176 ATATCCCAGACATGGTCTTACATGTAATCACA-ATACAATGCCAATATCCCAGACATAG-TCTTA
1 ATATCCCAGACATGGTCTTACATGTAATCACATAT-CAATGCCAATATCCCAGACA-AGCTCTTA
*
81886239 CATGTAATC
64 CACGTAATC
81886248 TCATCTCGGC
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
85 2 0.03
86 61 0.95
87 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.28
Consensus pattern (86 bp):
ATATCCCAGACATGGTCTTACATGTAATCACATATCAATGCCAATATCCCAGACAAGCTCTTACA
CGTAATCGATTAACGATGCCA
Found at i:81887362 original size:36 final size:36
Alignment explanation
Indices: 81887311--81887420 Score: 175
Period size: 36 Copynumber: 3.1 Consensus size: 36
81887301 TTTTCTCAAA
* *
81887311 TTAACCACTTAAATGACAACATTAGCATACGAAACT
1 TTAACCACTTAAATGATAAAATTAGCATACGAAACT
* *
81887347 TTAGCCACTTAAATGATAAAATTCGCATACGAAACT
1 TTAACCACTTAAATGATAAAATTAGCATACGAAACT
*
81887383 TTAACCACTTAAATGATAAAATTAGCATATGAAACT
1 TTAACCACTTAAATGATAAAATTAGCATACGAAACT
81887419 TT
1 TT
81887421 CACACATACA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 67 1.00
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.29
Consensus pattern (36 bp):
TTAACCACTTAAATGATAAAATTAGCATACGAAACT
Found at i:81899820 original size:17 final size:16
Alignment explanation
Indices: 81899770--81899827 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 16
81899760 GGGTGAGAAG
81899770 TAAAAGTTTAGGGGAAAAA
1 TAAAAGTTTA-GGG--AAA
*
81899789 TAAAAAGTTTTGGGAAA
1 T-AAAAGTTTAGGGAAA
81899806 TAAAAGTTTGAGGGAAA
1 TAAAAGTTT-AGGGAAA
81899823 GTAAA
1 -TAAA
81899828 TAGGGGGAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
16 8 0.24
17 10 0.29
18 4 0.12
19 4 0.12
20 8 0.24
ACGTcount: A:0.50, C:0.00, G:0.26, T:0.24
Consensus pattern (16 bp):
TAAAAGTTTAGGGAAA
Found at i:81902254 original size:18 final size:18
Alignment explanation
Indices: 81902214--81902260 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
81902204 CCTCCGGCTG
* * *
81902214 TGGCTCGGGCTCGGGCTC
1 TGGCTCTGGCTCAGGATC
*
81902232 GGGCTCTGGCTCAGGATC
1 TGGCTCTGGCTCAGGATC
81902250 TGGCTCTGGCT
1 TGGCTCTGGCT
81902261 TGGCCTCTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.04, C:0.30, G:0.40, T:0.26
Consensus pattern (18 bp):
TGGCTCTGGCTCAGGATC
Found at i:81902257 original size:6 final size:6
Alignment explanation
Indices: 81902209--81902264 Score: 51
Period size: 6 Copynumber: 9.5 Consensus size: 6
81902199 CTTGACCTCC
* * * * * *
81902209 GGCTGT GGCTCG GGCTCG GGCTCG GGCTCT GGCTCA GGATCT GGCTCT
1 GGCTCT GGCTCT GGCTCT GGCTCT GGCTCT GGCTCT GGCTCT GGCTCT
81902257 GGCT-T GGC
1 GGCTCT GGC
81902265 CTCTATATCG
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
5 4 0.09
6 39 0.91
ACGTcount: A:0.04, C:0.29, G:0.43, T:0.25
Consensus pattern (6 bp):
GGCTCT
Found at i:81902695 original size:45 final size:45
Alignment explanation
Indices: 81902631--81902720 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
81902621 GTGCGTTAGT
*
81902631 GCACCACAATTGAGAATGAATGTAGGCAGACGAGGGTATAATAGC
1 GCACCACAATTGAGAATGAATGTAAGCAGACGAGGGTATAATAGC
81902676 GCACCACAATTGAGAATGAATGTAAGCAGACGAGGGTATAATAGC
1 GCACCACAATTGAGAATGAATGTAAGCAGACGAGGGTATAATAGC
81902721 TGCAATTTTC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.39, C:0.16, G:0.28, T:0.18
Consensus pattern (45 bp):
GCACCACAATTGAGAATGAATGTAAGCAGACGAGGGTATAATAGC
Found at i:81904601 original size:17 final size:17
Alignment explanation
Indices: 81904579--81904611 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
81904569 AAAAAGTTAT
81904579 TTTTCGTATTTTATTTC
1 TTTTCGTATTTTATTTC
81904596 TTTTCGTATTTTATTT
1 TTTTCGTATTTTATTT
81904612 TTTCATTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.09, G:0.06, T:0.73
Consensus pattern (17 bp):
TTTTCGTATTTTATTTC
Found at i:81904645 original size:17 final size:16
Alignment explanation
Indices: 81904578--81904646 Score: 66
Period size: 16 Copynumber: 4.2 Consensus size: 16
81904568 CAAAAAGTTA
*
81904578 TTTTTCGTATTTTATT
1 TTTTTAGTATTTTATT
*
81904594 TCTTTTCGTATTTTATT
1 T-TTTTAGTATTTTATT
* * ***
81904611 TTTTCATTAAGATATT
1 TTTTTAGTATTTTATT
81904627 TTTTTAGTATTTTATT
1 TTTTTAGTATTTTATT
81904643 TTTT
1 TTTT
81904647 ATTTTATTTT
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
16 25 0.61
17 16 0.39
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (16 bp):
TTTTTAGTATTTTATT
Found at i:81905172 original size:16 final size:15
Alignment explanation
Indices: 81905138--81905197 Score: 63
Period size: 14 Copynumber: 4.1 Consensus size: 15
81905128 TGTCGCCTGC
*
81905138 TTCTCCTTCTCTT-TT
1 TTCTTCTTC-CTTCTT
81905153 TTCTTCTTCCCTTCTT
1 TTCTTCTT-CCTTCTT
81905169 TTCTTCTT-CTTCTT
1 TTCTTCTTCCTTCTT
*
81905183 CT-TTCTTCCTTCTT
1 TTCTTCTTCCTTCTT
81905197 T
1 T
81905198 CAAGCAAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
13 5 0.13
14 13 0.33
15 10 0.26
16 11 0.28
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (15 bp):
TTCTTCTTCCTTCTT
Found at i:81906879 original size:17 final size:17
Alignment explanation
Indices: 81906845--81906879 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
81906835 TCTCCCCTAT
*
81906845 TATTATTATCATTTTTA
1 TATTATTATCATTCTTA
*
81906862 TATTATTATTATTCTTA
1 TATTATTATCATTCTTA
81906879 T
1 T
81906880 TAGTACATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.66
Consensus pattern (17 bp):
TATTATTATCATTCTTA
Found at i:81911132 original size:19 final size:19
Alignment explanation
Indices: 81911108--81911152 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
81911098 CTCTTTAGTC
*
81911108 TTGCATT-CATCTCATGCAT
1 TTGCATTACATCACAT-CAT
81911127 TTGCATTACATCACATCAT
1 TTGCATTACATCACATCAT
*
81911146 GTGCATT
1 TTGCATT
81911153 GAATTTTACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.40
Consensus pattern (19 bp):
TTGCATTACATCACATCAT
Found at i:81913131 original size:32 final size:30
Alignment explanation
Indices: 81913064--81913148 Score: 73
Period size: 32 Copynumber: 2.7 Consensus size: 30
81913054 CCCCTAAAAG
* **
81913064 TTTTTGAAAATTTTCATTATACACTTTTTTGT
1 TTTTTGAAAATTTT-ATTAAACAC-TTAATGT
*
81913096 TTTTTGAAAATTTTAATTAAACCCTTCAAT-T
1 TTTTTGAAAATTTT-ATTAAACACTT-AATGT
*
81913127 TTTTTAAAAATTCTTATTAAAC
1 TTTTTGAAAATT-TTATTAAAC
81913149 TTATCAAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
31 21 0.47
32 24 0.53
ACGTcount: A:0.33, C:0.11, G:0.04, T:0.53
Consensus pattern (30 bp):
TTTTTGAAAATTTTATTAAACACTTAATGT
Found at i:81913137 original size:31 final size:31
Alignment explanation
Indices: 81913095--81913176 Score: 87
Period size: 31 Copynumber: 2.6 Consensus size: 31
81913085 CACTTTTTTG
* *
81913095 TTTTTTGAAAATTTTAATTAAACCCT-TCAAT
1 TTTTTTAAAAATTTTAATTAAA-CCTATCAAA
*
81913126 TTTTTTAAAAATTCTT-ATTAAACTTATCAAA
1 TTTTTTAAAAATT-TTAATTAAACCTATCAAA
* *
81913157 ATTTTTAAAAATTTCAATTA
1 TTTTTTAAAAATTTTAATTA
81913177 GATACTTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
30 3 0.07
31 38 0.88
32 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.01, T:0.49
Consensus pattern (31 bp):
TTTTTTAAAAATTTTAATTAAACCTATCAAA
Found at i:81913484 original size:58 final size:58
Alignment explanation
Indices: 81913414--81913526 Score: 181
Period size: 58 Copynumber: 1.9 Consensus size: 58
81913404 TAAGTTTTTT
* * *
81913414 TCGAGTTAATTTGTGACATCAATTCAATTAACGATATTATTAATATACGAACAATTTG
1 TCGAGTTAATTTGTGACACCAATTCAATTAACGACATTATCAATATACGAACAATTTG
* *
81913472 TCGAGTTGATTTGTGACACCAATTTAATTAACGACATTATCAATATACGAACAAT
1 TCGAGTTAATTTGTGACACCAATTCAATTAACGACATTATCAATATACGAACAAT
81913527 GTGGGAATCA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 50 1.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.35
Consensus pattern (58 bp):
TCGAGTTAATTTGTGACACCAATTCAATTAACGACATTATCAATATACGAACAATTTG
Found at i:81921760 original size:12 final size:12
Alignment explanation
Indices: 81921743--81921769 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
81921733 ACATACCATC
81921743 GGAACAAATTGT
1 GGAACAAATTGT
81921755 GGAACAAATTGT
1 GGAACAAATTGT
81921767 GGA
1 GGA
81921770 TCCCCAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.30, T:0.22
Consensus pattern (12 bp):
GGAACAAATTGT
Found at i:81924179 original size:24 final size:24
Alignment explanation
Indices: 81924126--81924171 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
81924116 TTTTTGTAGA
* *
81924126 ATATTTAGTATTTATTAGTATAAT
1 ATATTTAGCATTTATTAGCATAAT
81924150 ATATTTAGCATTTATTAGCATA
1 ATATTTAGCATTTATTAGCATA
81924172 GTTTATTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (24 bp):
ATATTTAGCATTTATTAGCATAAT
Found at i:81926395 original size:24 final size:24
Alignment explanation
Indices: 81926330--81926404 Score: 84
Period size: 22 Copynumber: 3.1 Consensus size: 24
81926320 AGTAAAACTA
81926330 TCTTTGCCCGTGGCTTTTTTTTATCT
1 TCTTTGCCCGTGGC--TTTTTTATCT
* *
81926356 TCTTTG---GAGGAGTTTTTTATCT
1 TCTTTGCCCGTGG-CTTTTTTATCT
81926378 TCTTTGCCCGTGGCTTTTTTATCT
1 TCTTTGCCCGTGGCTTTTTTATCT
81926402 TCT
1 TCT
81926405 GCTATTTTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
22 16 0.39
23 3 0.07
24 13 0.32
25 3 0.07
26 6 0.15
ACGTcount: A:0.07, C:0.20, G:0.17, T:0.56
Consensus pattern (24 bp):
TCTTTGCCCGTGGCTTTTTTATCT
Found at i:81927428 original size:39 final size:39
Alignment explanation
Indices: 81927374--81927452 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
81927364 GGAGGTTAAG
81927374 TAAGGTTAAACAATTTAACTTCGTTATCATCCATTAGGC
1 TAAGGTTAAACAATTTAACTTCGTTATCATCCATTAGGC
* *
81927413 TAAGGTTAAACAATTTATCTTCGTTATCCTCCATTAGGC
1 TAAGGTTAAACAATTTAACTTCGTTATCATCCATTAGGC
81927452 T
1 T
81927453 TCACTAATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (39 bp):
TAAGGTTAAACAATTTAACTTCGTTATCATCCATTAGGC
Found at i:81929780 original size:3 final size:3
Alignment explanation
Indices: 81929772--81929798 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
81929762 AATTCCAGTT
81929772 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
81929799 AAGAGGATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:81931168 original size:35 final size:34
Alignment explanation
Indices: 81931115--81931188 Score: 148
Period size: 34 Copynumber: 2.2 Consensus size: 34
81931105 TTTCTACAAA
81931115 AAAATATTTTTTGTAAAAAATTTGATTCCAACTG
1 AAAATATTTTTTGTAAAAAATTTGATTCCAACTG
81931149 AAAATATTTTTTGTAAAAAATTTGATTCCAACTG
1 AAAATATTTTTTGTAAAAAATTTGATTCCAACTG
81931183 AAAATA
1 AAAATA
81931189 AATTTGATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (34 bp):
AAAATATTTTTTGTAAAAAATTTGATTCCAACTG
Found at i:81931351 original size:16 final size:17
Alignment explanation
Indices: 81931332--81931364 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
81931322 TGACTTTTTA
*
81931332 TAAAAATAA-TTTTTGG
1 TAAAAAAAACTTTTTGG
81931348 TAAAAAAAACTTTTTGG
1 TAAAAAAAACTTTTTGG
81931365 ACTAATTGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.45, C:0.03, G:0.12, T:0.39
Consensus pattern (17 bp):
TAAAAAAAACTTTTTGG
Found at i:81938766 original size:17 final size:17
Alignment explanation
Indices: 81938722--81938768 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
81938712 CGCTTCCTAA
*
81938722 ATAATAGA-AATTT-TT
1 ATAATAGATATTTTATT
*
81938737 ATAA-AGATGTTTTATT
1 ATAATAGATATTTTATT
81938753 ATAATAGATATTTTAT
1 ATAATAGATATTTTAT
81938769 ATATCATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 3 0.12
15 7 0.27
16 6 0.23
17 10 0.38
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (17 bp):
ATAATAGATATTTTATT
Found at i:81938771 original size:16 final size:16
Alignment explanation
Indices: 81938722--81938771 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
81938712 CGCTTCCTAA
*
81938722 ATAATAGAAATTTT-T
1 ATAATAGATATTTTAT
*
81938737 ATAA-AGATGTTTTATT
1 ATAATAGATATTTTA-T
81938753 ATAATAGATATTTTAT
1 ATAATAGATATTTTAT
81938769 ATA
1 ATA
81938772 TCATAACTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 7 0.24
15 4 0.14
16 9 0.31
17 9 0.31
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (16 bp):
ATAATAGATATTTTAT
Found at i:81940839 original size:13 final size:13
Alignment explanation
Indices: 81940821--81940848 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
81940811 ACAAAATTGG
81940821 AAAGATGAAAAAT
1 AAAGATGAAAAAT
81940834 AAAGATGAAAAAT
1 AAAGATGAAAAAT
81940847 AA
1 AA
81940849 TAAAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (13 bp):
AAAGATGAAAAAT
Found at i:81941921 original size:25 final size:26
Alignment explanation
Indices: 81941869--81941921 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
81941859 GAGCTTTCCA
* * *
81941869 ATTAAAGACTCTTTGTGAGCTTCTTG
1 ATTAAAGACTCTCTGTGAGCTACGTG
*
81941895 ATTAATGACTCTCTG-GAGCTACGTG
1 ATTAAAGACTCTCTGTGAGCTACGTG
81941920 AT
1 AT
81941922 ATGGCTTGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTAAAGACTCTCTGTGAGCTACGTG
Found at i:81944290 original size:28 final size:29
Alignment explanation
Indices: 81944259--81944370 Score: 84
Period size: 29 Copynumber: 3.9 Consensus size: 29
81944249 ATACATGCAT
*
81944259 ATGGCCCACTAGGCCCAATT-TTATTCAA
1 ATGGCCCACTAGGCCCAATTCATATTCAA
* ***
81944287 ATGGCCCATCT-GGCCCAGTTCATATTTTT
1 ATGGCCCA-CTAGGCCCAATTCATATTCAA
* * * *
81944316 ATGGCCCACTAGGCCTAAATCACATTCAT
1 ATGGCCCACTAGGCCCAATTCATATTCAA
* * * *
81944345 ATGGCCCATTAGACTCAAATCATATT
1 ATGGCCCACTAGGCCCAATTCATATT
81944371 ATATTCATGC
Statistics
Matches: 65, Mismatches: 16, Indels: 5
0.76 0.19 0.06
Matches are distributed among these distances:
28 18 0.28
29 47 0.72
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (29 bp):
ATGGCCCACTAGGCCCAATTCATATTCAA
Found at i:81944330 original size:29 final size:28
Alignment explanation
Indices: 81944256--81944352 Score: 88
Period size: 29 Copynumber: 3.4 Consensus size: 28
81944246 TACATACATG
*
81944256 CATATGGCCCACTAGGCCCAATTTTATT
1 CATATGGCCCACTAGGCCCAATTATATT
* *
81944284 CAAATGGCCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCA-CTAGGCCCAATT-ATATT
** * * *
81944313 TTTATGGCCCACTAGGCCTAAATCACATT
1 CATATGGCCCACTAGGCC-CAATTATATT
81944342 CATATGGCCCA
1 CATATGGCCCA
81944353 TTAGACTCAA
Statistics
Matches: 53, Mismatches: 12, Indels: 7
0.74 0.17 0.10
Matches are distributed among these distances:
28 20 0.38
29 31 0.58
30 2 0.04
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (28 bp):
CATATGGCCCACTAGGCCCAATTATATT
Found at i:81944476 original size:19 final size:19
Alignment explanation
Indices: 81944452--81944489 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
81944442 CAGCCTATCA
81944452 GGCCCATTTAGCCAATTCT
1 GGCCCATTTAGCCAATTCT
*
81944471 GGCCCATTTGGCCAATTCT
1 GGCCCATTTAGCCAATTCT
81944490 CAACCCAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.18, C:0.32, G:0.18, T:0.32
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCT
Found at i:81945855 original size:16 final size:16
Alignment explanation
Indices: 81945834--81945865 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
81945824 GAAAAATTCA
81945834 AGATTTCGAGATTTTT
1 AGATTTCGAGATTTTT
81945850 AGATTTCGAGATTTTT
1 AGATTTCGAGATTTTT
81945866 GGGGCATTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.19, T:0.50
Consensus pattern (16 bp):
AGATTTCGAGATTTTT
Found at i:81948736 original size:29 final size:30
Alignment explanation
Indices: 81948711--81948775 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
81948701 TGACCCATCT
* * * *
81948711 GGCCCAGTTCATATTCTTATGGCCCA-CTA
1 GGCCCAATTCACATTCATATAGCCCATCTA
81948740 GGCCCAATTCACATTCATATAGCCCAT-TA
1 GGCCCAATTCACATTCATATAGCCCATCTA
81948769 GGCCCAA
1 GGCCCAA
81948776 ATAATATTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.26
Consensus pattern (30 bp):
GGCCCAATTCACATTCATATAGCCCATCTA
Found at i:81948890 original size:19 final size:19
Alignment explanation
Indices: 81948866--81948902 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
81948856 AGCCCATCAG
81948866 GCCCATTTAGCCAATTCTA
1 GCCCATTTAGCCAATTCTA
*
81948885 GCCCATTTGGCCAATTCT
1 GCCCATTTAGCCAATTCT
81948903 CAACCCAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.32, G:0.14, T:0.32
Consensus pattern (19 bp):
GCCCATTTAGCCAATTCTA
Found at i:81951331 original size:152 final size:152
Alignment explanation
Indices: 81951079--81951352 Score: 386
Period size: 152 Copynumber: 1.8 Consensus size: 152
81951069 CCCATATATG
* ** * * *
81951079 TCGTCGAAATAGGGTTATAGAGCATTACTGTAAAAATGTAACTTAAAATCATCAATTTTCAAACA
1 TCGTCGAAATAGGGTTATAGAGCATTACCGTAAAAACATAAATTAAAATCATCAATATCCAAACA
* * *
81951144 TTTCATAACCATAGCAAAATCCATTCAAACACATGCATATCGTCCCTTATTCGAGCCACTAAATG
66 TTTCATAACCACAGAAAAATCCATTCAAACACATGCATATCATCCCTTATTCGAGCCACTAAATG
81951209 TAACATACCTAACCCGTATCCA
131 TAACATACCTAACCCGTATCCA
* * * * * *
81951231 TCGTCGGAATAGGGTTCTAGAGTATTGCCGTAAAAACATAAATTAAAATTATTAATATCCAAACA
1 TCGTCGAAATAGGGTTATAGAGCATTACCGTAAAAACATAAATTAAAATCATCAATATCCAAACA
* * *
81951296 TTTCATAATCACAGAAAAATCCATTCAAATACATGCATATCATCCTTTATTCGAGCC
66 TTTCATAACCACAGAAAAATCCATTCAAACACATGCATATCATCCCTTATTCGAGCC
81951353 CTCGAGGCAT
Statistics
Matches: 104, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
152 104 1.00
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (152 bp):
TCGTCGAAATAGGGTTATAGAGCATTACCGTAAAAACATAAATTAAAATCATCAATATCCAAACA
TTTCATAACCACAGAAAAATCCATTCAAACACATGCATATCATCCCTTATTCGAGCCACTAAATG
TAACATACCTAACCCGTATCCA
Found at i:81952529 original size:22 final size:20
Alignment explanation
Indices: 81952504--81952569 Score: 51
Period size: 25 Copynumber: 2.9 Consensus size: 20
81952494 AGCATACTGG
81952504 AATTCATACTTTTCATGAACAT
1 AATTCATACTTTTCAT-AA-AT
81952526 AATTATACATACTTTGATCATAAAT
1 AA-T-T-CATACTTT--TCATAAAT
*
81952551 AATTCATACCTTTCCATAA
1 AATTCATA-CTTTTCATAA
81952570 GTTCTTAAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 13
0.73 0.02 0.25
Matches are distributed among these distances:
21 5 0.14
22 6 0.16
23 6 0.16
24 2 0.05
25 12 0.32
26 2 0.05
27 4 0.11
ACGTcount: A:0.39, C:0.18, G:0.03, T:0.39
Consensus pattern (20 bp):
AATTCATACTTTTCATAAAT
Found at i:81952552 original size:25 final size:26
Alignment explanation
Indices: 81952508--81952559 Score: 65
Period size: 25 Copynumber: 2.0 Consensus size: 26
81952498 TACTGGAATT
81952508 CATACTTTTCATGAACATAATT-ATA
1 CATACTTTTCATGAACATAATTCATA
81952533 CATACTTTGATCAT-AA-ATAATTCATA
1 CATACTTT--TCATGAACATAATTCATA
81952559 C
1 C
81952560 CTTTCCATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
25 14 0.58
26 6 0.25
27 4 0.17
ACGTcount: A:0.40, C:0.17, G:0.04, T:0.38
Consensus pattern (26 bp):
CATACTTTTCATGAACATAATTCATA
Found at i:81954487 original size:41 final size:40
Alignment explanation
Indices: 81954441--81954522 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 40
81954431 AATTATGGGA
*
81954441 TACTGAATATTGTTTTGAATACCGAATTGAACTGTGAAAAT
1 TACTGAATATTGTTATGAATACCGAATTGAACTGT-AAAAT
** *
81954482 TACTGAATATTGTTATGAATATTGCATTGAACTGTAAAAT
1 TACTGAATATTGTTATGAATACCGAATTGAACTGTAAAAT
81954522 T
1 T
81954523 TCAGATGAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 6 0.16
41 31 0.84
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (40 bp):
TACTGAATATTGTTATGAATACCGAATTGAACTGTAAAAT
Found at i:81954774 original size:39 final size:39
Alignment explanation
Indices: 81954712--81954827 Score: 110
Period size: 45 Copynumber: 2.8 Consensus size: 39
81954702 TTACTGATCA
* * * *
81954712 GACAC-TTATGTGCCGACTACTGTTACTGTTACCGATTC
1 GACACTTTGTGTGTCGAATACTGTTACTGTTACAGATTC
81954750 GACACTTTGTGTGTCGAATACTGTTACCGTTACTGTTACAGATTC
1 GACACTTTGTGTGTCGAATAC---T---GTTACTGTTACAGATTC
*
81954795 -AGCACTTTGTGTGTTGAATACTGTTACTGTTAC
1 GA-CACTTTGTGTGTCGAATACTGTTACTGTTAC
81954828 TATTACTGTT
Statistics
Matches: 65, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
38 5 0.08
39 23 0.35
42 2 0.03
44 1 0.02
45 34 0.52
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.38
Consensus pattern (39 bp):
GACACTTTGTGTGTCGAATACTGTTACTGTTACAGATTC
Found at i:81954801 original size:45 final size:45
Alignment explanation
Indices: 81954733--81954833 Score: 150
Period size: 45 Copynumber: 2.2 Consensus size: 45
81954723 GCCGACTACT
*
81954733 GTTACTGTTACCGATTCGACACTTTGTGTGTCGAATACTGTTACC
1 GTTACTGTTACAGATTCGACACTTTGTGTGTCGAATACTGTTACC
* *
81954778 GTTACTGTTACAGATTC-AGCACTTTGTGTGTTGAATACTGTTACT
1 GTTACTGTTACAGATTCGA-CACTTTGTGTGTCGAATACTGTTACC
*
81954823 GTTACTATTAC
1 GTTACTGTTAC
81954834 TGTTACTGCT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 1 0.02
45 50 0.98
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (45 bp):
GTTACTGTTACAGATTCGACACTTTGTGTGTCGAATACTGTTACC
Done.