Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111961792
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4980000 characters in sequence are not A, C, G, or T
File 247 of 344
Found at i:81954824 original size:6 final size:6
Alignment explanation
Indices: 81954813--81954850 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
81954803 GTGTGTTGAA
* *
81954813 TACTGT TACTGT TACTAT TACTGT TACTGC TACTGT TA
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TA
81954851 TTGATTATTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.47
Consensus pattern (6 bp):
TACTGT
Found at i:81955591 original size:14 final size:13
Alignment explanation
Indices: 81955575--81955600 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81955565 GAAATTTATA
81955575 AAAAAAATAAAAT
1 AAAAAAATAAAAT
81955588 AAAAAAATAAAAT
1 AAAAAAATAAAAT
81955601 TCTGGAGTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAAAATAAAAT
Found at i:81958056 original size:43 final size:43
Alignment explanation
Indices: 81957895--81958058 Score: 131
Period size: 43 Copynumber: 3.8 Consensus size: 43
81957885 CATAGGATTC
* **
81957895 CGATATGTGATTTCATGTAAGACCAAATCTGGGAC-GTTGGCAT
1 CGATATGTGAGTTCATGTAAGACCACGTCTGGGACAG-TGGCAT
* * * * * * *
81957938 CGATTTGTGATTTGCGTGTAAGACAATGTCTGGGACA-TCAGTAT
1 CGATATGTGAGTT-CATGTAAGACCACGTCTGGGACAGT-GGCAT
* * *
81957982 CG-TATATGAGTTCATGTAATACC-CTGCCTGGGACAGTGGCAT
1 CGATATGTGAGTTCATGTAAGACCAC-GTCTGGGACAGTGGCAT
81958024 CGATATGTGA-TTACATGTAAGACCACGTCTGGGAC
1 CGATATGTGAGTT-CATGTAAGACCACGTCTGGGAC
81958059 GTTGGTGTTG
Statistics
Matches: 93, Mismatches: 20, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
42 24 0.26
43 45 0.48
44 24 0.26
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
CGATATGTGAGTTCATGTAAGACCACGTCTGGGACAGTGGCAT
Found at i:81965814 original size:43 final size:42
Alignment explanation
Indices: 81965653--81965815 Score: 170
Period size: 43 Copynumber: 3.8 Consensus size: 42
81965643 CATAGGATTC
* * *
81965653 CGATATGTGATTTCGTGTAAGACCAAGTCTGGGACGTTGGCAT
1 CGATATGTGAGTTCGTGTAAGACCATGTCTGGGAAG-TGGCAT
* *
81965696 CGATTTGTGATTTGCGTGTAAGACCATGTCTGGGACA-TCGGCAT
1 CGATATGTGAGTT-CGTGTAAGACCATGTCTGGGA-AGT-GGCAT
* *
81965740 C-ATATATGAGTTCGTGTAAGACCCTGTCTGGGATAGTGGCAT
1 CGATATGTGAGTTCGTGTAAGACCATGTCTGGGA-AGTGGCAT
* *
81965782 CGATATGTGA-TTACATGTATGACCATGTCTGGGA
1 CGATATGTGAGTT-CGTGTAAGACCATGTCTGGGA
81965816 CGTTGGCGTT
Statistics
Matches: 102, Mismatches: 12, Indels: 12
0.81 0.10 0.10
Matches are distributed among these distances:
42 29 0.28
43 47 0.46
44 26 0.25
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (42 bp):
CGATATGTGAGTTCGTGTAAGACCATGTCTGGGAAGTGGCAT
Found at i:81969565 original size:20 final size:20
Alignment explanation
Indices: 81969537--81969584 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
81969527 TGTAAATATA
81969537 TTTAGGTAGTTATTAAGCTTG
1 TTTA-GTAGTTATTAAGCTTG
*
81969558 TTTAGTAGTTATTAAGTTTG
1 TTTAGTAGTTATTAAGCTTG
81969578 TTTAGTA
1 TTTAGTA
81969585 AATTGTTAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.25, C:0.02, G:0.21, T:0.52
Consensus pattern (20 bp):
TTTAGTAGTTATTAAGCTTG
Found at i:81970386 original size:13 final size:13
Alignment explanation
Indices: 81970368--81970392 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81970358 TAAAGCTCGC
81970368 GAATTCGTAATTT
1 GAATTCGTAATTT
81970381 GAATTCGTAATT
1 GAATTCGTAATT
81970393 AGATAAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (13 bp):
GAATTCGTAATTT
Found at i:81970946 original size:18 final size:18
Alignment explanation
Indices: 81970915--81970949 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
81970905 GGCATAATTT
*
81970915 AAAATAAATTTTTTAAAG
1 AAAATAAATATTTTAAAG
*
81970933 AAAATGAATATTTTAAA
1 AAAATAAATATTTTAAA
81970950 TATGGAAGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (18 bp):
AAAATAAATATTTTAAAG
Found at i:81971717 original size:28 final size:29
Alignment explanation
Indices: 81971684--81971745 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 29
81971674 ATCTAAAAAG
81971684 AAATTAAAAAATAAATAAAAAATC-TATA
1 AAATTAAAAAATAAATAAAAAATCATATA
* * ** *
81971712 AAATTAATATATATTTAAAAAATCATTTA
1 AAATTAAAAAATAAATAAAAAATCATATA
81971741 AAATT
1 AAATT
81971746 TTTATGCAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 20 0.71
29 8 0.29
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (29 bp):
AAATTAAAAAATAAATAAAAAATCATATA
Found at i:81973892 original size:14 final size:14
Alignment explanation
Indices: 81973873--81973901 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
81973863 CATCTAACTA
81973873 TGAAAAGTTACAAG
1 TGAAAAGTTACAAG
81973887 TGAAAAGTTACAAG
1 TGAAAAGTTACAAG
81973901 T
1 T
81973902 TAGATACTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.07, G:0.21, T:0.24
Consensus pattern (14 bp):
TGAAAAGTTACAAG
Found at i:81974079 original size:56 final size:55
Alignment explanation
Indices: 81973972--81974083 Score: 136
Period size: 56 Copynumber: 2.0 Consensus size: 55
81973962 AAAATCCAAG
* * *
81973972 ATGACAAAAAAAATACTGATAATTAAGTAATCATTTTGTAATTTTTCATAATTAA
1 ATGACAAAAAAAATACTAATAATTAAGTAACCATTTTATAATTTTTCATAATTAA
* * * *
81974027 ATGATAAAAAAATATATTAATAATTAAGTGACCGTTTTATAAATTTTT-ATAATTAA
1 ATGACAAAAAAA-ATACTAATAATTAAGTAACCATTTTAT-AATTTTTCATAATTAA
81974083 A
1 A
81974084 AGAAAATATA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
55 11 0.23
56 30 0.62
57 7 0.15
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.39
Consensus pattern (55 bp):
ATGACAAAAAAAATACTAATAATTAAGTAACCATTTTATAATTTTTCATAATTAA
Found at i:81982655 original size:20 final size:19
Alignment explanation
Indices: 81982630--81982667 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
81982620 TTAAAAAATC
81982630 TTATTATGTATAAA-TTATAA
1 TTATTA-GT-TAAACTTATAA
81982650 TTATTAGTTAAACTTATA
1 TTATTAGTTAAACTTATA
81982668 GTTTTCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 7 0.41
20 6 0.35
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (19 bp):
TTATTAGTTAAACTTATAA
Found at i:81983986 original size:26 final size:25
Alignment explanation
Indices: 81983957--81984008 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
81983947 AAATATATCT
81983957 TTTA-ATATGTATTACTTAAAAATTAA
1 TTTAGATATGT-TTACTT-AAAATTAA
*
81983983 TTTAGTATATGTTTAGTTAAAATTAA
1 TTTAG-ATATGTTTACTTAAAATTAA
81984009 AATAATTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 12 0.52
27 5 0.22
28 6 0.26
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (25 bp):
TTTAGATATGTTTACTTAAAATTAA
Found at i:81986127 original size:24 final size:24
Alignment explanation
Indices: 81986100--81986147 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
81986090 TTCTTTTTAG
81986100 TTAGATTGAATTTGGCAATGAAAC
1 TTAGATTGAATTTGGCAATGAAAC
81986124 TTAGATTGAATTTGGCAATGAAAC
1 TTAGATTGAATTTGGCAATGAAAC
81986148 CATGCAACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (24 bp):
TTAGATTGAATTTGGCAATGAAAC
Found at i:81990300 original size:14 final size:14
Alignment explanation
Indices: 81990242--81990300 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
81990232 ACCTAAACCG
*
81990242 ACCAATTCGTTCAT
1 ACCATTTCGTTCAT
*
81990256 ATCC-CTTCGTTCAT
1 A-CCATTTCGTTCAT
* *
81990270 ACCATTTCATTCCT
1 ACCATTTCGTTCAT
*
81990284 ACCATTTCGTTCGT
1 ACCATTTCGTTCAT
81990298 ACC
1 ACC
81990301 CCTCTTTCTT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
13 2 0.05
14 33 0.89
15 2 0.05
ACGTcount: A:0.20, C:0.34, G:0.07, T:0.39
Consensus pattern (14 bp):
ACCATTTCGTTCAT
Found at i:81994183 original size:30 final size:32
Alignment explanation
Indices: 81994112--81994195 Score: 129
Period size: 32 Copynumber: 2.7 Consensus size: 32
81994102 ATTTAAGTTA
81994112 AAATATATATTATAA-TATAAAAGCTTAAGAATT
1 AAATATATA-TA-AATTATAAAAGCTTAAGAATT
81994145 AAATATATATAAATTATAAAAGCTTAAGAATT
1 AAATATATATAAATTATAAAAGCTTAAGAATT
81994177 AAATATATAT--ATTATAAAA
1 AAATATATATAAATTATAAAA
81994196 TTATAATAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
30 9 0.18
31 2 0.04
32 30 0.60
33 9 0.18
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (32 bp):
AAATATATATAAATTATAAAAGCTTAAGAATT
Found at i:81994264 original size:18 final size:18
Alignment explanation
Indices: 81994241--81994277 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
81994231 AAGCTAAAAC
81994241 AAAAA-GGAAAGAAAAGAA
1 AAAAAGGGAAAG-AAAGAA
81994259 AAAAAGGGAAAGAAAGAA
1 AAAAAGGGAAAGAAAGAA
81994277 A
1 A
81994278 GGAGAAAGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (18 bp):
AAAAAGGGAAAGAAAGAA
Found at i:81994272 original size:14 final size:15
Alignment explanation
Indices: 81994253--81994286 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
81994243 AAAGGAAAGA
81994253 AAAGAAAAAAAGG-G
1 AAAGAAAAAAAGGAG
*
81994267 AAAGAAAGAAAGGAG
1 AAAGAAAAAAAGGAG
81994282 AAAGA
1 AAAGA
81994287 CAAGGCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAAAGGAG
Found at i:82012436 original size:22 final size:23
Alignment explanation
Indices: 82012402--82012445 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
82012392 AAATATTAAG
82012402 AATTAAAGGGAAA-ATGGTATAA
1 AATTAAAGGGAAAGATGGTATAA
**
82012424 AATTAAATTGAAAGTATGGTAT
1 AATTAAAGGGAAAG-ATGGTAT
82012446 TTTAACTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 11 0.61
24 7 0.39
ACGTcount: A:0.50, C:0.00, G:0.20, T:0.30
Consensus pattern (23 bp):
AATTAAAGGGAAAGATGGTATAA
Found at i:82020610 original size:18 final size:18
Alignment explanation
Indices: 82020587--82020623 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
82020577 GTCTTTCTCC
82020587 TTTC-TTTCTTTCCCTTTT
1 TTTCTTTTCTTT-CCTTTT
82020605 TTTCTTTTCTTTCCTTTT
1 TTTCTTTTCTTTCCTTTT
82020623 T
1 T
82020624 GTTTTAGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTCTTTTCTTTCCTTTT
Found at i:82020613 original size:15 final size:15
Alignment explanation
Indices: 82020578--82020611 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
82020568 CCTAGCCTTG
82020578 TCTTTCTCCTTTCTT
1 TCTTTCTCCTTTCTT
*
82020593 TCTTTC-CCTTTTTT
1 TCTTTCTCCTTTCTT
82020607 TCTTT
1 TCTTT
82020612 TCTTTCCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (15 bp):
TCTTTCTCCTTTCTT
Found at i:82020713 original size:32 final size:32
Alignment explanation
Indices: 82020669--82020752 Score: 129
Period size: 32 Copynumber: 2.7 Consensus size: 32
82020659 TTTATTATAA
82020669 TTTTATAA--TATATATATTTAATTCTTAAGC
1 TTTTATAATTTATATATATTTAATTCTTAAGC
82020699 TTTTATAATTTATATATATTTAATTCTTAAGC
1 TTTTATAATTTATATATATTTAATTCTTAAGC
82020731 TTTTAT-ATTATAATATATATTT
1 TTTTATAATT-T-ATATATATTT
82020753 TAACTTAAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
30 8 0.16
31 3 0.06
32 29 0.58
33 10 0.20
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (32 bp):
TTTTATAATTTATATATATTTAATTCTTAAGC
Found at i:82020760 original size:32 final size:33
Alignment explanation
Indices: 82020671--82020768 Score: 116
Period size: 32 Copynumber: 3.0 Consensus size: 33
82020661 TATTATAATT
82020671 TTATAATATATATATTTAATTCTTAAGCTTTTATAA
1 TTATAATATATAT-TTTAA-TCTTAAGCTTTTAT-A
82020707 TT-T-ATATATA-TTTAATTCTTAAGCTTTTATA
1 TTATAATATATATTTTAA-TCTTAAGCTTTTATA
*
82020738 TTATAATATATATTTTAA-CTTAA-ATTTTATA
1 TTATAATATATATTTTAATCTTAAGCTTTTATA
82020769 ATACTATTAC
Statistics
Matches: 58, Mismatches: 1, Indels: 11
0.83 0.01 0.16
Matches are distributed among these distances:
31 10 0.17
32 26 0.45
33 7 0.12
34 12 0.21
35 1 0.02
36 2 0.03
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (33 bp):
TTATAATATATATTTTAATCTTAAGCTTTTATA
Found at i:82028650 original size:24 final size:23
Alignment explanation
Indices: 82028614--82028660 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 23
82028604 AGGTTGCATG
82028614 GTTTCATGCCAAATTCAATCTAA
1 GTTTCATGCCAAATTCAATCTAA
82028637 GTTTCATTGCCAAATTCAATCTAA
1 GTTTCA-TGCCAAATTCAATCTAA
82028661 CTAAAAAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 6 0.26
24 17 0.74
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (23 bp):
GTTTCATGCCAAATTCAATCTAA
Found at i:82045837 original size:24 final size:26
Alignment explanation
Indices: 82045780--82045846 Score: 75
Period size: 24 Copynumber: 2.6 Consensus size: 26
82045770 AATTGTACTG
*
82045780 TCCCTTTTGCTCTCCCAACTCTCCCAA
1 TCCCTTTTGATCT-CCAACTCTCCCAA
* *
82045807 TCGCTTTTGATCTCCAA-T-TCCTAA
1 TCCCTTTTGATCTCCAACTCTCCCAA
*
82045831 TCCCTTTTGATTTCCA
1 TCCCTTTTGATCTCCA
82045847 TCATCCTTTG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
24 19 0.54
25 1 0.03
26 4 0.11
27 11 0.31
ACGTcount: A:0.16, C:0.37, G:0.06, T:0.40
Consensus pattern (26 bp):
TCCCTTTTGATCTCCAACTCTCCCAA
Found at i:82054240 original size:17 final size:17
Alignment explanation
Indices: 82054218--82054251 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
82054208 GAGAAAAAGA
82054218 CTCCACAAGAGGTATGG
1 CTCCACAAGAGGTATGG
82054235 CTCCACAAGAGGTATGG
1 CTCCACAAGAGGTATGG
82054252 TATGGTAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.29, T:0.18
Consensus pattern (17 bp):
CTCCACAAGAGGTATGG
Found at i:82059208 original size:39 final size:40
Alignment explanation
Indices: 82059105--82059289 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
82059095 TTGAATGATG
* * *
82059105 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
82059144 ATCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
82059185 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
82059224 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
82059263 AACCAGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
82059290 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:82059243 original size:79 final size:81
Alignment explanation
Indices: 82059105--82059289 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
82059095 TTGAATGATG
* *
82059105 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCTGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
82059169 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
82059184 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
82059246 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* * *
82059264 ACCAGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
82059290 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:82059311 original size:79 final size:79
Alignment explanation
Indices: 82059160--82059322 Score: 197
Period size: 79 Copynumber: 2.1 Consensus size: 79
82059150 ACTAAGATCT
* * **
82059160 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
*
82059225 CCGGGTTAAGTCCC
66 CCGGGTTAAATCCC
* *
82059239 GAAGGCATTTGTGCGAGTTACT-ATAACCAGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGATACTAAT-ACCAGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTA
* *
82059302 TATCC-GGTTAAATTCC
63 AATCCGGGTTAAATCCC
82059318 GAAGG
1 GAAGG
82059323 TACGTGATTT
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.62
80 25 0.35
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
CCGGGTTAAATCCC
Found at i:82068099 original size:21 final size:21
Alignment explanation
Indices: 82068065--82068107 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
82068055 CATGTTTGAT
82068065 TTTGGTTATCTTT-GCTTATGG
1 TTTGGTTATCTTTGGC-TATGG
82068086 TTTGAGTTAT-TTTGGCTATGG
1 TTTG-GTTATCTTTGGCTATGG
82068107 T
1 T
82068108 ATTTTATGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.12, C:0.07, G:0.26, T:0.56
Consensus pattern (21 bp):
TTTGGTTATCTTTGGCTATGG
Found at i:82071464 original size:47 final size:45
Alignment explanation
Indices: 82071361--82071624 Score: 171
Period size: 47 Copynumber: 5.6 Consensus size: 45
82071351 GTAAGGTGTC
*
82071361 GATGCCATGTCCCAGACATGGTCTTACACTGGCAC-AT-ATTTCAAG-T
1 GATG-CATGTCCCAGACAT-GTCTTACACT-G-ACTATCATCTCAAGCT
* *
82071407 CAAAGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGCT
1 -GATG-CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCA-AGCT
* * * *
82071456 GACGCATGTCCCAGACATGTCTTACACT-AGCT-TACGTCTCGAGCCC
1 GATGCATGTCCCAGACATGTCTTACACTGA-CTAT-CATCTCAAG-CT
* * * *
82071502 GATGCATGTCCCAAACATGTCTTACACT-AGCTCTCGTCTCAATGTT
1 GATGCATGTCCCAGACATGTCTTACACTGA-CTATCATCTCAA-GCT
* * * * ***
82071548 GGTGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTATCAT-CTCAAGCT
*
82071596 GATGTATGTCCCAGACATGTCTTACACTG
1 GATGCATGTCCCAGACATGTCTTACACTG
82071625 GCTCATAAAC
Statistics
Matches: 180, Mismatches: 24, Indels: 27
0.78 0.10 0.12
Matches are distributed among these distances:
45 6 0.03
46 72 0.40
47 75 0.42
48 25 0.14
49 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGACTATCATCTCAAGCT
Found at i:82071509 original size:46 final size:46
Alignment explanation
Indices: 82071413--82071628 Score: 167
Period size: 46 Copynumber: 4.6 Consensus size: 46
82071403 AAGTCAAAGC
* * * *
82071413 CATGTCCCAGACATGGTCTTACACT-GACTATCATCTC-ATAGCTGACG
1 CATGTCCCAGACAT-GTCTTACACTAG-CTCTCGTCTCAAT-GCCGATG
*
82071460 CATGTCCCAGACATGTCTTACACTAGCT-TACGTCTCGA-GCCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATG-CCGATG
* ** *
82071506 CATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAATGTTGGTG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATG
* * *
82071552 CCATGTCCCAGACATGGTCTTACACTGGCTCTC--AT-AATGTGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAA--T-GCCGATG
* *
82071600 TATGTCCCAGACATGTCTTACACTGGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
82071629 ATAAACAAAT
Statistics
Matches: 144, Mismatches: 14, Indels: 23
0.80 0.08 0.13
Matches are distributed among these distances:
45 4 0.03
46 74 0.51
47 45 0.31
48 21 0.15
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATG
Found at i:82079071 original size:47 final size:48
Alignment explanation
Indices: 82079000--82079123 Score: 150
Period size: 47 Copynumber: 2.6 Consensus size: 48
82078990 GCAAGGTGCT
* * **
82079000 GATGCCATGTCCCAGACATGGTCTTACACTGACTCAT-AT-TTCA-AGTA
1 GATGCCATGTCCTAGACATTGTCTTACACTGACT-ATCATCTT-ATAACA
*
82079047 GATGCCATGTCCTAGACATTGTCTTACACTGACTATCATCTTATAACC
1 GATGCCATGTCCTAGACATTGTCTTACACTGACTATCATCTTATAACA
82079095 GATG-CATGTCCTAGACA-TGTCTTACACTG
1 GATGCCATGTCCTAGACATTGTCTTACACTG
82079124 GCTTATGTTT
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
46 14 0.20
47 48 0.70
48 7 0.10
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (48 bp):
GATGCCATGTCCTAGACATTGTCTTACACTGACTATCATCTTATAACA
Found at i:82079267 original size:46 final size:47
Alignment explanation
Indices: 82079047--82079267 Score: 159
Period size: 46 Copynumber: 4.7 Consensus size: 47
82079037 ATTTCAAGTA
* * * * * **
82079047 GATGCCATGTCCTAGACATTGTCTTACACTGACTATCATC-TTATAACC
1 GATG-CATGTCCCAGACA-TGTCTTACACTGGCTCTCATCAATGTGGCC
* *** *
82079095 GATGCATGTCCTAGACATGTCTTACACTGGCT-T-ATGTTTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCAAT-GTGGCC
* * * *
82079141 GATGAATGTCCCAAACATGTCTGACACTAGCTCTCATCTCAA--T-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCA--TCAATGTGGCC
* *
82079187 GGTGCCATGTCCCAGACACGGTCTTACACTGGCTCTCAT-AATGTGGCC
1 GATG-CATGTCCCAGACA-TGTCTTACACTGGCTCTCATCAATGTGGCC
*
82079235 GATGCATGTCCCAGACATGTCTTACATTGGCTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTC
82079268 ACAAACAAAT
Statistics
Matches: 138, Mismatches: 24, Indels: 24
0.74 0.13 0.13
Matches are distributed among these distances:
44 2 0.01
45 5 0.04
46 64 0.46
47 39 0.28
48 27 0.20
50 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCAATGTGGCC
Found at i:82082198 original size:66 final size:66
Alignment explanation
Indices: 82082089--82082349 Score: 391
Period size: 66 Copynumber: 4.0 Consensus size: 66
82082079 TGAAATGTGA
* *
82082089 GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGTTATGATTGACAGGAATTG
1 GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGTTGTGATTGACAGGAACTG
82082154 T
66 T
* * * *
82082155 GAAATTGATTTGTACTATTATTTGAGCATTACTCACCTATTGTGAACTT-TGATTGATAGGAACT
1 GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTG-AGTTGTGATTGACAGGAACT
82082219 GT
65 GT
* * * *
82082221 GAAATTTATTTGTACTATTGTTTGAGC-TTACTCACCTGTTGTGAGCTGTGGTTGATAGGAACTG
1 GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGTTGTGATTGACAGGAACTG
82082285 T
66 T
* *
82082286 GAAATTGATTTGTATTATTGTTTGAGCATTACTCACCTGTTGTGAGTTGTGATTGACATGAACT
1 GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGTTGTGATTGACAGGAACT
82082350 CTATTAGTAA
Statistics
Matches: 175, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
64 2 0.01
65 56 0.32
66 114 0.65
67 3 0.02
ACGTcount: A:0.25, C:0.11, G:0.22, T:0.41
Consensus pattern (66 bp):
GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGTTGTGATTGACAGGAACTG
T
Found at i:82082341 original size:131 final size:132
Alignment explanation
Indices: 82082089--82082330 Score: 396
Period size: 131 Copynumber: 1.8 Consensus size: 132
82082079 TGAAATGTGA
* *
82082089 GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGTTATGATTGACAGGAATTG
1 GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGCTATGATTGACAGGAACTG
82082154 TGAAATTGATTTGTACTATTATTTGAGCATTACTCACCTATTGTGAACTTTGATTGATAGGAACT
66 TGAAATTGATTTGTACTATTATTTGAGCATTACTCACCTATTGTGAACTTTGATTGATAGGAACT
82082219 GT
131 GT
* * * *
82082221 GAAATTTATTTGTACTATTGTTTGAGC-TTACTCACCTGTTGTGAGCTGTGGTTGATAGGAACTG
1 GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGCTATGATTGACAGGAACTG
* * *
82082285 TGAAATTGATTTGTATTATTGTTTGAGCATTACTCACCTGTTGTGA
66 TGAAATTGATTTGTACTATTATTTGAGCATTACTCACCTATTGTGA
82082331 GTTGTGATTG
Statistics
Matches: 101, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
131 75 0.74
132 26 0.26
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.42
Consensus pattern (132 bp):
GAAATTGATTTGTACTATTGTTTGAGCATTACTCACCTGTTGTGAGCTATGATTGACAGGAACTG
TGAAATTGATTTGTACTATTATTTGAGCATTACTCACCTATTGTGAACTTTGATTGATAGGAACT
GT
Found at i:82084020 original size:17 final size:17
Alignment explanation
Indices: 82083983--82084022 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
82083973 ATCTTCGACT
*
82083983 AGCTTCCAACCCGATTA
1 AGCTTCCAACCCGATCA
* *
82084000 AGCTTCCAACTCGATCG
1 AGCTTCCAACCCGATCA
82084017 AGCTTC
1 AGCTTC
82084023 TGATAATCTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.25, C:0.35, G:0.15, T:0.25
Consensus pattern (17 bp):
AGCTTCCAACCCGATCA
Found at i:82091157 original size:16 final size:16
Alignment explanation
Indices: 82091138--82091170 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
82091128 AATTGTTTTA
82091138 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
82091154 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
82091170 T
1 T
82091171 CTCCATTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.48
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:82091428 original size:50 final size:50
Alignment explanation
Indices: 82091369--82091807 Score: 477
Period size: 50 Copynumber: 8.7 Consensus size: 50
82091359 ACCGAAACTC
* *
82091369 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * * *
82091419 TCTGGTACACGTAGTAGCCTGCATTTAGGACTACACACGTGACTTATCCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * *
82091469 TCTGATACACGTAGTAGCCTGCACTTAGTACTACATATGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA--CAA
* * * *
82091521 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * *
82091570 TCCGGTACACGTAGTAGCCTGCACTTAGTACTATACAAGTAACCTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * ** *
82091620 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCTAACAA
** *
82091671 T-TAGGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
1 TCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* *
82091721 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACAA
*** * *
82091773 TCTTAAACACATAGTAGCCTGCACATAGTACTACA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACA
82091808 TGTGTTCTCA
Statistics
Matches: 321, Mismatches: 60, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
49 2 0.01
50 205 0.64
51 79 0.25
52 35 0.11
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:82091579 original size:101 final size:101
Alignment explanation
Indices: 82091372--82091807 Score: 484
Period size: 101 Copynumber: 4.3 Consensus size: 101
82091362 GAAACTCTCT
82091372 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-ATCAATCTGGTACACGTAGTAG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATCAATCTGGTACACGTAGTAG
* * * * *
82091436 CCTGCATTTAGGACTACACACGTGACTTATCCATCT
66 CCTGCACTTAGTACTACACACGTGACCTATCAATCA
* * * * * * * * *
82091472 GATACACGTAGTAGCCTGCACTTAGTACTACATATGTGATCGAAGTTAA-CGGGTACGCATAGTA
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-TCAATCTGGTACACGTAGTA
* *
82091536 GCCTGCACTTAGTACTACACATGTGACCTATCAATCC
65 GCCTGCACTTAGTACTACACACGTGACCTATCAATCA
* * * * * *
82091573 GGTACACGTAGTAGCCTGCACTTAGTACTATACAAGTAACCTAA-CCATCTGATACACGTAGTAG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATCAATCTGGTACACGTAGTAG
** * * *
82091637 CCTGCACTTAGTACTACACACGTGATCGAAACTATTA
66 CCTGCACTTAGTACTACACACGTGA-CCTATCAATCA
**
82091674 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAATCTGGTACACGTAGTAG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATCAATCTGGTACACGTAGTAG
* * *
82091738 CCTGCACTTAGTACTACACACGTGACCTAAAACTATCT
66 CCTGCACTTAGTACTACACACGTGACCT--ATCAATCA
*** *
82091776 TAAACACATAGTAGCCTGCACATAGTACTACA
1 GGTACACATAGTAGCCTGCACTTAGTACTACA
82091808 TGTGTTCTCA
Statistics
Matches: 277, Mismatches: 53, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
99 1 0.00
100 74 0.27
101 167 0.60
102 35 0.13
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (101 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATCAATCTGGTACACGTAGTAG
CCTGCACTTAGTACTACACACGTGACCTATCAATCA
Found at i:82091646 original size:151 final size:151
Alignment explanation
Indices: 82091372--82091808 Score: 649
Period size: 151 Copynumber: 2.9 Consensus size: 151
82091362 GAAACTCTCT
*
82091372 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
* * * *
82091437 CTGCATTTAGGACTACACACGTGACTTATCCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
* ** *
82091502 CATATGTGATCGAAGTTAACG
131 CATACGTGATCGAAACTAACA
*
82091523 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCCGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
* * *
82091588 CTGCACTTAGTACTATACAAGTAACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
* **
82091653 CACACGTGATCGAAACTATTA
131 CATACGTGATCGAAACTAACA
* *
82091674 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
* * * * *
82091739 CTGCACTTAGTACTACACACGTGACCTAAAACTATCTTAAACACATAGTAGCCTGCACATAGTAC
66 CTGCACTTAGTACTACACACGTGACCT--AACCATCTGATACACGTAGTAGCCTGCACTTAGTAC
82091804 TACAT
129 TACAT
82091809 GTGTTCTCAC
Statistics
Matches: 256, Mismatches: 28, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
151 221 0.86
153 35 0.14
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
CATACGTGATCGAAACTAACA
Found at i:82094858 original size:9 final size:9
Alignment explanation
Indices: 82094844--82094872 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
82094834 ACATGTCATT
82094844 TATATCCTA
1 TATATCCTA
82094853 TATATCCTA
1 TATATCCTA
82094862 TATATCCTA
1 TATATCCTA
82094871 TA
1 TA
82094873 AATTTCATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (9 bp):
TATATCCTA
Found at i:82105490 original size:19 final size:20
Alignment explanation
Indices: 82105458--82105495 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
82105448 AAACTCAGGG
* *
82105458 AAATTTTGAGAAAACATAGA
1 AAATTTTCAGAAAAAATAGA
82105478 AAATTTTCA-AAAAAATAG
1 AAATTTTCAGAAAAAATAG
82105496 GGGACACACG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.58, C:0.05, G:0.11, T:0.26
Consensus pattern (20 bp):
AAATTTTCAGAAAAAATAGA
Found at i:82108384 original size:23 final size:23
Alignment explanation
Indices: 82108303--82108384 Score: 71
Period size: 22 Copynumber: 3.5 Consensus size: 23
82108293 ATACCATTTA
* *
82108303 CAGAGAATATTTTGCTATTCATGTGC
1 CAGAGAATA-TTTACTGTTC-T-TGC
*
82108329 CAGAGAAT-CTTACTGTTCTTGC
1 CAGAGAATATTTACTGTTCTTGC
*
82108351 AAG-GAATATTTACTGTT-TATGC
1 CAGAGAATATTTACTGTTCT-TGC
82108373 CAGAGAATATTT
1 CAGAGAATATTT
82108385 CCTATTCACT
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
21 5 0.11
22 18 0.38
23 9 0.19
24 7 0.15
26 8 0.17
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (23 bp):
CAGAGAATATTTACTGTTCTTGC
Found at i:82110155 original size:21 final size:21
Alignment explanation
Indices: 82110129--82110173 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
82110119 GTAATGACCT
*
82110129 AAAAACCTTACTTTGG-TTTGG
1 AAAAA-CTTACTTTGGATTTAG
*
82110150 AAAAACTTATTTTGGATTTAG
1 AAAAACTTACTTTGGATTTAG
82110171 AAA
1 AAA
82110174 CTACTAAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (21 bp):
AAAAACTTACTTTGGATTTAG
Found at i:82110830 original size:20 final size:23
Alignment explanation
Indices: 82110795--82110839 Score: 69
Period size: 20 Copynumber: 2.1 Consensus size: 23
82110785 GAACAAATTG
82110795 TTGATTCTATTTCTTTTTTG-AT
1 TTGATTCTATTTCTTTTTTGTAT
82110817 TTGA-TCTA-TTCTTTTTTGTAT
1 TTGATTCTATTTCTTTTTTGTAT
82110838 TT
1 TT
82110840 CTCTTTTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 10 0.45
21 8 0.36
22 4 0.18
ACGTcount: A:0.13, C:0.09, G:0.09, T:0.69
Consensus pattern (23 bp):
TTGATTCTATTTCTTTTTTGTAT
Found at i:82110848 original size:20 final size:20
Alignment explanation
Indices: 82110804--82110849 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
82110794 GTTGATTCTA
82110804 TTTCTTTTTTGATTTGATCT
1 TTTCTTTTTTGATTTGATCT
* *
82110824 ATTCTTTTTTGTATTT-CTCT
1 TTTCTTTTTTG-ATTTGATCT
82110844 TTTCTT
1 TTTCTT
82110850 AATTGTTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.09, C:0.13, G:0.07, T:0.72
Consensus pattern (20 bp):
TTTCTTTTTTGATTTGATCT
Found at i:82111984 original size:10 final size:9
Alignment explanation
Indices: 82111965--82112006 Score: 50
Period size: 10 Copynumber: 4.4 Consensus size: 9
82111955 TAACATTTTA
82111965 TTTTTTGTT
1 TTTTTTGTT
82111974 TTTTGTTGTT
1 TTTT-TTGTT
82111984 TTTTTT-TCT
1 TTTTTTGT-T
82111993 TTTTTTGTAT
1 TTTTTTGT-T
82112003 TTTT
1 TTTT
82112007 ATATTTAGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
8 1 0.03
9 13 0.45
10 15 0.52
ACGTcount: A:0.02, C:0.02, G:0.10, T:0.86
Consensus pattern (9 bp):
TTTTTTGTT
Found at i:82111988 original size:18 final size:19
Alignment explanation
Indices: 82111963--82112006 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
82111953 TATAACATTT
82111963 TATTTTTTGTT-TTTTGTTG
1 TATTTTTT-TTCTTTTGTTG
*
82111982 T-TTTTTTTTCTTTTTTTG
1 TATTTTTTTTCTTTTGTTG
82112000 TATTTTT
1 TATTTTT
82112007 ATATTTAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 2 0.09
18 14 0.64
19 6 0.27
ACGTcount: A:0.05, C:0.02, G:0.09, T:0.84
Consensus pattern (19 bp):
TATTTTTTTTCTTTTGTTG
Found at i:82112006 original size:21 final size:20
Alignment explanation
Indices: 82111959--82112006 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
82111949 CATCTATAAC
82111959 ATTTTATTTTTTGTTTTTTGT
1 ATTTT-TTTTTTGTTTTTTGT
*
82111980 -TGTTTTTTTTTCTTTTTTTGT
1 AT-TTTTTTTTT-GTTTTTTGT
82112001 ATTTTT
1 ATTTTT
82112007 ATATTTAGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
20 7 0.30
21 15 0.65
22 1 0.04
ACGTcount: A:0.06, C:0.02, G:0.08, T:0.83
Consensus pattern (20 bp):
ATTTTTTTTTTGTTTTTTGT
Found at i:82113521 original size:35 final size:37
Alignment explanation
Indices: 82113453--82113521 Score: 90
Period size: 35 Copynumber: 1.9 Consensus size: 37
82113443 GTATTCATAA
* *
82113453 ATTATAATATTCTTGAAGAATGCTTTTCTTTTTTATC
1 ATTATAATATTCTTAAAGAATGCTTCTCTTTTTTATC
82113490 ATTATAAT-TT-TTAAAGTAAT-CTTCTCTTTTTT
1 ATTATAATATTCTTAAAG-AATGCTTCTCTTTTTT
82113522 GCTTATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 16 0.55
36 5 0.17
37 8 0.28
ACGTcount: A:0.28, C:0.10, G:0.06, T:0.57
Consensus pattern (37 bp):
ATTATAATATTCTTAAAGAATGCTTCTCTTTTTTATC
Found at i:82129392 original size:37 final size:37
Alignment explanation
Indices: 82129300--82129392 Score: 89
Period size: 37 Copynumber: 2.5 Consensus size: 37
82129290 ACTAAACTCT
* * * * * *
82129300 AAACTATAATATTTAAATTTCAATGACTAAATTGTATA
1 AAACTGTAAAATTTAAA-TTCAAGGACTAAAATATAAA
* *
82129338 AAA-TGTAAGATTCTAAATTCAGGGACTAAAATATAAA
1 AAACTGTAAAATT-TAAATTCAAGGACTAAAATATAAA
82129375 AAACTGTAAAATTTAAAT
1 AAACTGTAAAATTTAAAT
82129393 ATTAGGGATT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
37 30 0.67
38 15 0.33
ACGTcount: A:0.51, C:0.08, G:0.09, T:0.33
Consensus pattern (37 bp):
AAACTGTAAAATTTAAATTCAAGGACTAAAATATAAA
Found at i:82141089 original size:22 final size:22
Alignment explanation
Indices: 82141061--82141104 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
82141051 TTTGACGAAA
82141061 AACTTGACTATAGATTTTCGAC
1 AACTTGACTATAGATTTTCGAC
*
82141083 AACTTGACTATATATTTTCGAC
1 AACTTGACTATAGATTTTCGAC
82141105 CATTGATGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (22 bp):
AACTTGACTATAGATTTTCGAC
Found at i:82142828 original size:30 final size:30
Alignment explanation
Indices: 82142782--82142875 Score: 143
Period size: 30 Copynumber: 3.1 Consensus size: 30
82142772 TTTTATTATG
*
82142782 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
82142813 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
82142843 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
82142873 CCA
1 CCA
82142876 TAAATATGGA
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
30 51 0.88
31 7 0.12
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:82142837 original size:15 final size:15
Alignment explanation
Indices: 82142792--82142869 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
82142782 CCAATATCTC
82142792 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
82142807 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
82142822 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
82142837 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
82142852 GATACCCATATCTTT
1 GATACCCATATCTTT
82142867 GAT
1 GAT
82142870 TTTCCATAAA
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 8 0.18
15 29 0.64
16 8 0.18
ACGTcount: A:0.26, C:0.22, G:0.08, T:0.45
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:82146883 original size:1 final size:1
Alignment explanation
Indices: 82146877--82146907 Score: 62
Period size: 1 Copynumber: 31.0 Consensus size: 1
82146867 ATTGGTCACG
82146877 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
82146908 AGTTTTCGAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:82157393 original size:40 final size:39
Alignment explanation
Indices: 82157356--82157614 Score: 250
Period size: 40 Copynumber: 6.5 Consensus size: 39
82157346 ATATCCGGAC
82157356 TAAGATCCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGT
* * *
82157396 TAAGCCCCGAATGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * ** *
82157436 TAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCAGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * **
82157476 TAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * *
82157516 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * ** *
82157556 TAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGC
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
*
82157596 TATGTCCCGAAGGCATTTG
1 TAAGT-CCGAAGGCATTTG
82157615 AACGAGGAGC
Statistics
Matches: 199, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
40 196 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
Found at i:82157446 original size:80 final size:79
Alignment explanation
Indices: 82157362--82157612 Score: 349
Period size: 80 Copynumber: 3.1 Consensus size: 79
82157352 GGACTAAGAT
* * * * * * * * **
82157362 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCCCCGAATGCCTTTGTGCGAGATACTA
1 CCGAAGGCATTCGTGCGAGTTATAAA-TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
82157427 AATCCGGGTTAAGTC
65 AATCCGGGTTAAGTC
* *
82157442 CCGAAGGCATTCGTGCGAGTTGTTAAATCAGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTT-ATAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
82157507 AATCCGGGTTAAGTC
65 AATCCGGGTTAAGTC
82157522 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTA-TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
* *
82157587 AATCCGGGCTATGTC
65 AATCCGGGTTAAGTC
82157602 CCGAAGGCATT
1 CCGAAGGCATT
82157613 TGAACGAGGA
Statistics
Matches: 153, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
80 150 0.98
81 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTTATAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
ATCCGGGTTAAGTC
Found at i:82157525 original size:120 final size:120
Alignment explanation
Indices: 82157362--82157612 Score: 369
Period size: 120 Copynumber: 2.1 Consensus size: 120
82157352 GGACTAAGAT
* * * *
82157362 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCCCCGAATGCCTTTGTGCGAGATACTA
1 CCGAAGGCATTCGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTA
*
82157427 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCAGGGTTAAGTC
66 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCAGGGCTAAGTC
* ** * * *
82157482 CCGAAGGCATTCGTGCGAGTTGTTAAA-TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATT
1 CCGAAGGCATTCGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACT
* *
82157546 AAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGCTATGTC
65 AAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCAGGGCTAAGTC
82157602 CCGAAGGCATT
1 CCGAAGGCATT
82157613 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
120 114 0.97
121 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
CCGAAGGCATTCGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTA
AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCAGGGCTAAGTC
Found at i:82157632 original size:80 final size:80
Alignment explanation
Indices: 82157362--82157647 Score: 337
Period size: 80 Copynumber: 3.6 Consensus size: 80
82157352 GGACTAAGAT
* * * * * * * **
82157362 CCGAAGGCATTTGTGCGAG-A-TACAAATTCCGGGTTAAGCCCCGAATGCCTTTGTGCGAGATAC
1 CCGAAGGCATTCGTGCGAGTAGT-TAAA-TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
82157425 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* *
82157442 CCGAAGGCATTCGTGCGAGTTGTTAAATCAGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTAGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
82157507 AATCCGGGTTAAGTC
66 AATCCGGGTTAAGTC
82157522 CCGAAGGCATTCGTGCGAGTTA-TTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTT
1 CCGAAGGCATTCGTGCGAG-TAGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTT
* *
82157586 AAATCCGGGCTATGTC
65 AAATCCGGGTTAAGTC
* ** * * * *
82157602 CCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGAAGGCATTCGTGCGAGTAGTTAAATCCGGGTTAAGTCCCGAAGG
82157648 TACGTGATTT
Statistics
Matches: 180, Mismatches: 22, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
79 16 0.09
80 159 0.88
81 4 0.02
82 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTAGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
AATCCGGGTTAAGTC
Found at i:82157632 original size:120 final size:120
Alignment explanation
Indices: 82157389--82157647 Score: 358
Period size: 120 Copynumber: 2.2 Consensus size: 120
82157379 AGATACAAAT
* * * *
82157389 TCCGGGTTAAGCCCCGAATGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* ** ** *
82157454 GTGCGAGTTGTTAAATCAGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 GTGCGAGTTGTTAAATCAGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
* *
82157509 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* * * *
82157574 GTGCGAGTTGTTAAATCCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATA
66 GTGCGAGTTGTTAAATCAGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
*
82157629 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
82157648 TACGTGATTT
Statistics
Matches: 122, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
119 15 0.12
120 107 0.88
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTGTTAAATCAGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
Found at i:82159572 original size:48 final size:48
Alignment explanation
Indices: 82159401--82159706 Score: 176
Period size: 47 Copynumber: 6.5 Consensus size: 48
82159391 TTATCAATGC
* * * * * ** * *
82159401 CATGTCCTAGACATGGTCTTACATTGGCTCTCATATACGCGTGCTGATG
1 CATGTCCCAGACATGGTCTTACACTGACTATCATCTGTGAG-GCCGATG
* *
82159450 CATGTCTCAGACAT-GTCTTACACTAGCAC-AAC-TCT-T-A-GCCGATG
1 CATGTCCCAGACATGGTCTTACACT-G-ACTATCATCTGTGAGGCCGATG
* * *
82159494 CGTGTCCCAGACA-CGTCTTACACTGGCTATC-TCTGTCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGACTATCATCTGT-GAGGCCGATG
* * *
82159541 CATGTCCCATACATGGTCTTACACTGACTATCAT-AGT-ATGGCTGATG
1 CATGTCCCAGACATGGTCTTACACTGACTATCATCTGTGA-GGCCGATG
** * *
82159588 CATGTCCCAGACAT-GTCTTACACT-AGCCCTCGTCTG-GATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGA-CTATCATCTGTGAGGCCGATG
* * * * * *
82159634 CCATGCCCCAGACATGGTCTTACACTGGCTCTCATAATGT--GGCTGAAG
1 -CATGTCCCAGACATGGTCTTACACTGACTATCAT-CTGTGAGGCCGATG
*
82159682 CATGTCCCAGACA-CGTCTTACACTG
1 CATGTCCCAGACATGGTCTTACACTG
82159707 GCTCACAAAT
Statistics
Matches: 201, Mismatches: 37, Indels: 41
0.72 0.13 0.15
Matches are distributed among these distances:
42 1 0.00
43 6 0.03
44 28 0.14
45 1 0.00
46 33 0.16
47 65 0.32
48 49 0.24
49 17 0.08
50 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTGACTATCATCTGTGAGGCCGATG
Found at i:82159607 original size:94 final size:94
Alignment explanation
Indices: 82159490--82159709 Score: 291
Period size: 94 Copynumber: 2.3 Consensus size: 94
82159480 ACTCTTAGCC
* * *
82159490 GATGCGTGTCCCAGACACGTCTTACACTGGCTATC-TCTGTCGAGGCCGATG-CATGTCCCATAC
1 GATGCATGTCCCAGACACGTCTTACACTGGCTATCGTCTG--GAGGCCGATGCCATGCCCCAGAC
*
82159553 ATGGTCTTACACTGACTATCATAGTATGGCT
64 ATGGTCTTACACTGACTATCATAATATGGCT
* * ** *
82159584 GATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTGGATGCCGATGCCATGCCCCAGACAT
1 GATGCATGTCCCAGACACGTCTTACACTGGCTATCGTCTGGAGGCCGATGCCATGCCCCAGACAT
* * *
82159649 GGTCTTACACTGGCTCTCATAATGTGGCT
66 GGTCTTACACTGACTATCATAATATGGCT
*
82159678 GAAGCATGTCCCAGACACGTCTTACACTGGCT
1 GATGCATGTCCCAGACACGTCTTACACTGGCT
82159710 CACAAATCAC
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
93 9 0.08
94 95 0.88
95 4 0.04
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (94 bp):
GATGCATGTCCCAGACACGTCTTACACTGGCTATCGTCTGGAGGCCGATGCCATGCCCCAGACAT
GGTCTTACACTGACTATCATAATATGGCT
Found at i:82159705 original size:46 final size:45
Alignment explanation
Indices: 82159487--82159710 Score: 182
Period size: 47 Copynumber: 4.8 Consensus size: 45
82159477 ACAACTCTTA
* *
82159487 GCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATCTC-TGTCGAG
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGC--TCTCATGT-GTG
* * * * *
82159534 GCCGATGCATGTCCCATACATGGTCTTACACTGACTATCATAGTATG
1 GCCGATGCATGTCCCAGACA-CGTCTTACACTGGCTCTCAT-GTGTG
* * * * * *
82159581 GCTGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTG-G
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTCTCATGTGTG
* * *
82159625 ATGCCGATGCCATGCCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 --GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTCTCAT-GTGTG
* *
82159675 GCTGAAGCATGTCCCAGACACGTCTTACACTGGCTC
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTC
82159711 ACAAATCACC
Statistics
Matches: 140, Mismatches: 28, Indels: 19
0.75 0.15 0.10
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 38 0.27
47 62 0.44
48 35 0.25
49 2 0.01
50 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.26
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACACGTCTTACACTGGCTCTCATGTGTG
Found at i:82162776 original size:39 final size:39
Alignment explanation
Indices: 82162713--82162868 Score: 267
Period size: 39 Copynumber: 4.0 Consensus size: 39
82162703 ATTACCAGCA
* * * *
82162713 CCAGCATGAAGCCTGGGGGTCTTTAGCCCGGACACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
82162752 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
82162791 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
82162830 CCAGCACGAAGCCTGCGGGACTTTAGACCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
82162869 TCAGTGTCTT
Statistics
Matches: 112, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:82166827 original size:27 final size:26
Alignment explanation
Indices: 82166797--82167000 Score: 183
Period size: 27 Copynumber: 7.5 Consensus size: 26
82166787 AAATTGTACA
82166797 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* *
82166824 GCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* * *
82166851 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
82166878 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
*
82166905 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTT
* * * *
82166933 GCACTAACTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTT
* * *
82166960 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTT
*
82166987 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
82167001 GGCTCAATAT
Statistics
Matches: 152, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 127 0.84
28 24 0.16
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:82166857 original size:54 final size:53
Alignment explanation
Indices: 82166797--82167000 Score: 212
Period size: 54 Copynumber: 3.8 Consensus size: 53
82166787 AAATTGTACA
* * *
82166797 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAATTGAATATGTG
* * ** *
82166851 GCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTA-GCACTAAGTGTGCGAATTGAATATGTG
* * * *
82166905 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAACTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-T-TGACTATGTAGCACTAAGTGTGCGAATTGAATATGTG
* * *
82166960 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCG
82167001 GGCTCAATAT
Statistics
Matches: 125, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
53 1 0.01
54 76 0.61
55 47 0.38
56 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (53 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAATTGAATATGTG
Found at i:82166991 original size:109 final size:108
Alignment explanation
Indices: 82166797--82167000 Score: 275
Period size: 109 Copynumber: 1.9 Consensus size: 108
82166787 AAATTGTACA
* * * * *
82166797 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAACTGTGCGAAATGAATACGTGGCACTAAGTGT
82166862 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
** *
82166905 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAACTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAACTGTGCGAAATGAATACGTGGCACTAAGTG
** * *
82166970 TGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
65 TGCGAAATGAATATGAT-GCACTAAGTGTGCG
82167001 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
108 19 0.23
109 63 0.77
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (108 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAACTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
Found at i:82174888 original size:27 final size:26
Alignment explanation
Indices: 82174854--82175057 Score: 183
Period size: 27 Copynumber: 7.5 Consensus size: 26
82174844 AAATTGTACA
82174854 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* * *
82174881 GCATTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* * *
82174908 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
82174935 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
*
82174962 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTT
* * *
82174990 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTT
* * *
82175017 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTT
*
82175044 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
82175058 GGCTCAATAT
Statistics
Matches: 152, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 126 0.83
28 25 0.16
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:82174913 original size:54 final size:54
Alignment explanation
Indices: 82174854--82175031 Score: 205
Period size: 54 Copynumber: 3.3 Consensus size: 54
82174844 AAATTGTACA
* * * *
82174854 GCACTAAGTGTGCGATTCGACTATGTTGCATTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCGAATCGACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
* * ** *
82174908 GCACTAAGTGTGCGAAAT-GAATATGATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-AATCGACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
* * * * *
82174962 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATC-GACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
82175017 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
82175032 GTTGATTATA
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
53 2 0.02
54 56 0.54
55 45 0.44
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAATCGACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
Found at i:82175022 original size:82 final size:81
Alignment explanation
Indices: 82174854--82175036 Score: 208
Period size: 82 Copynumber: 2.2 Consensus size: 81
82174844 AAATTGTACA
* ** * *
82174854 GCACTAAGTGTGCG-ATTCGACTATGTTGCATTAAGTGTGCGAAATGAATATGTTGCACTAAGTG
1 GCACTAAGTGTGCGAATT-GACCATGCGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
82174918 TGCGAAATGAATATGAT
65 TGCGAAATGAATACGAT
** *
82174935 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGA-AATGAATATGTAGCACTAAGTG
** *
82175000 TGCGATTTGATTACG-T
65 TGCGAAATGAATACGAT
*
82175016 GGCACTAAGTGTGCGAGTTGA
1 -GCACTAAGTGTGCGAATTGA
82175037 TTATATAGCA
Statistics
Matches: 86, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
81 35 0.41
82 51 0.59
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAAATGAATACGAT
Found at i:82175048 original size:109 final size:108
Alignment explanation
Indices: 82174854--82175057 Score: 275
Period size: 109 Copynumber: 1.9 Consensus size: 108
82174844 AAATTGTACA
* * * * *
82174854 GCACTAAGTGTGCGATTCGACTATGTTGCATTAAGTGTGCGAAATGAATATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
82174919 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
** *
82174962 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
** * *
82175027 TGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
65 TGCGAAATGAATATGAT-GCACTAAGTGTGCG
82175058 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
108 19 0.23
109 63 0.77
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (108 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
Found at i:82176451 original size:19 final size:20
Alignment explanation
Indices: 82176419--82176456 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
82176409 AAACTCAGGG
* *
82176419 AAATTTTGAGAAAACATAGA
1 AAATTTTCAGAAAAAATAGA
82176439 AAATTTTCA-AAAAAATAG
1 AAATTTTCAGAAAAAATAG
82176457 GGGACACACG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.58, C:0.05, G:0.11, T:0.26
Consensus pattern (20 bp):
AAATTTTCAGAAAAAATAGA
Found at i:82179521 original size:23 final size:23
Alignment explanation
Indices: 82179487--82179542 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
82179477 TTCATGTGCC
*
82179487 AGAGAAT-CTTACTGTTCT-TGCA
1 AGAGAATATTTACTGTT-TATGCA
* *
82179509 AGGGAATATTTACTGTTTATGCC
1 AGAGAATATTTACTGTTTATGCA
82179532 AGAGAATATTT
1 AGAGAATATTT
82179543 CCTATTCACT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 7 0.25
23 21 0.75
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (23 bp):
AGAGAATATTTACTGTTTATGCA
Found at i:82194242 original size:59 final size:59
Alignment explanation
Indices: 82194166--82194307 Score: 164
Period size: 59 Copynumber: 2.4 Consensus size: 59
82194156 ATCAGTGTTA
* *
82194166 ACTGGGCCTTAGCCCATATCAATATTAATTTGGGCCATAGCCCT-TAC-AGTAAC-AGAGTAT
1 ACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATACAAGT--CGAGA-TAT
* *
82194226 ACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATACAAGTCGAGATAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATACAAGTCGAGATAT
* * *
82194285 ATTGGGCCTTGCCCATATTAATA
1 ACTGGGCCTAGCCCATATCAATA
82194308 CAGTTGGGTC
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
59 54 0.76
60 14 0.20
61 3 0.04
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (59 bp):
ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATACAAGTCGAGATAT
Found at i:82201187 original size:37 final size:37
Alignment explanation
Indices: 82201094--82201187 Score: 91
Period size: 37 Copynumber: 2.5 Consensus size: 37
82201084 ACTAAACTCT
* * * * * *
82201094 AAAACTATAATATTTAAATTTCAATGACTAAATTGTAT
1 AAAACTGTAAAATTTAAA-TTCAAGGACTAAAATATAA
* *
82201132 AAAA-TGTAAGATTCTAAATTCAGGGACTAAAATATAA
1 AAAACTGTAAAATT-TAAATTCAAGGACTAAAATATAA
82201169 AAAACTGTAAAATTTAAAT
1 AAAACTGTAAAATTTAAAT
82201188 ATTAGGGATT
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
37 30 0.65
38 16 0.35
ACGTcount: A:0.51, C:0.07, G:0.09, T:0.33
Consensus pattern (37 bp):
AAAACTGTAAAATTTAAATTCAAGGACTAAAATATAA
Found at i:82212842 original size:22 final size:22
Alignment explanation
Indices: 82212814--82212857 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
82212804 TTTGACGAAA
82212814 AACTTGACTATAGATTTTCGAC
1 AACTTGACTATAGATTTTCGAC
*
82212836 AACTTGACTATATATTTTCGAC
1 AACTTGACTATAGATTTTCGAC
82212858 CATTGATGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (22 bp):
AACTTGACTATAGATTTTCGAC
Found at i:82214582 original size:30 final size:30
Alignment explanation
Indices: 82214536--82214629 Score: 143
Period size: 30 Copynumber: 3.1 Consensus size: 30
82214526 TTTTATTATG
*
82214536 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
82214567 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
82214597 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
82214627 CCA
1 CCA
82214630 TAAATATGGA
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
30 51 0.88
31 7 0.12
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:82214591 original size:15 final size:15
Alignment explanation
Indices: 82214546--82214623 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
82214536 CCAATATCTC
82214546 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
82214561 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
82214576 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
82214591 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
82214606 GATACCCATATCTTT
1 GATACCCATATCTTT
82214621 GAT
1 GAT
82214624 TTTCCATAAA
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 8 0.18
15 29 0.64
16 8 0.18
ACGTcount: A:0.26, C:0.22, G:0.08, T:0.45
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:82226502 original size:53 final size:53
Alignment explanation
Indices: 82226417--82226524 Score: 198
Period size: 53 Copynumber: 2.0 Consensus size: 53
82226407 TCCTCCCCAG
82226417 ACCAATATTACGTATACGAACTTTCTTGGTAACTTTGTCCTCCAATGAAGTCA
1 ACCAATATTACGTATACGAACTTTCTTGGTAACTTTGTCCTCCAATGAAGTCA
* *
82226470 ACCATTATTATGTATACGAACTTTCTTGGTAACTTTGTCCTCCAATGAAGTCA
1 ACCAATATTACGTATACGAACTTTCTTGGTAACTTTGTCCTCCAATGAAGTCA
82226523 AC
1 AC
82226525 GATGCAGAAG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (53 bp):
ACCAATATTACGTATACGAACTTTCTTGGTAACTTTGTCCTCCAATGAAGTCA
Found at i:82235763 original size:48 final size:48
Alignment explanation
Indices: 82235684--82235804 Score: 125
Period size: 48 Copynumber: 2.5 Consensus size: 48
82235674 TGACGCCATG
* * * ** * * *
82235684 TCCCAGACAGGTCTTACACCAGCTTGTATATCGCGAGGCTGATGCATG
1 TCCCAGACATGTCTCACACTAGCTTAAATATCGAGAGGCCGATGCATA
* * *
82235732 TCCCAGATATGTCTCACACTGGCTTAAATATCTAGAGGCCGATGCATA
1 TCCCAGACATGTCTCACACTAGCTTAAATATCGAGAGGCCGATGCATA
* *
82235780 TCCCAGACGTGTCTTACACTAGCTT
1 TCCCAGACATGTCTCACACTAGCTT
82235805 TCATGCTGTA
Statistics
Matches: 58, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
48 58 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (48 bp):
TCCCAGACATGTCTCACACTAGCTTAAATATCGAGAGGCCGATGCATA
Found at i:82236216 original size:30 final size:30
Alignment explanation
Indices: 82236180--82236263 Score: 141
Period size: 30 Copynumber: 2.8 Consensus size: 30
82236170 ATAATTGGAA
*
82236180 AAAATGACCATTTTTCCCTTAGACTTTCAC
1 AAAATGACCATTTTACCCTTAGACTTTCAC
82236210 AAAATGACCATTTTACCCTTAGACTTTCAC
1 AAAATGACCATTTTACCCTTAGACTTTCAC
* *
82236240 AAAATAACCATTTTACCCCTAGAC
1 AAAATGACCATTTTACCCTTAGAC
82236264 GTGAAAATTG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.35, C:0.27, G:0.06, T:0.32
Consensus pattern (30 bp):
AAAATGACCATTTTACCCTTAGACTTTCAC
Found at i:82240505 original size:17 final size:18
Alignment explanation
Indices: 82240483--82240516 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
82240473 AGTTGAATTG
82240483 AAATTGCG-AAATTAAAT
1 AAATTGCGAAAATTAAAT
*
82240500 AAATTGTGAAAATTAAA
1 AAATTGCGAAAATTAAA
82240517 ATGGAGAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.03, G:0.12, T:0.29
Consensus pattern (18 bp):
AAATTGCGAAAATTAAAT
Found at i:82241254 original size:10 final size:10
Alignment explanation
Indices: 82241235--82241284 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
82241225 TTAAATACTA
82241235 AAAGATAAAT
1 AAAGATAAAT
82241245 ACAA-ATAAAT
1 A-AAGATAAAT
*
82241255 AAAGATAATT
1 AAAGATAAAT
82241265 AAAGATAAAT
1 AAAGATAAAT
82241275 GAAA-ATAAAT
1 -AAAGATAAAT
82241285 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:82242115 original size:96 final size:96
Alignment explanation
Indices: 82241951--82242209 Score: 457
Period size: 96 Copynumber: 2.7 Consensus size: 96
82241941 GGAGTATACT
82241951 GAACCTTTTGACGCGAAGAGAGATGACAAACCAAGCACCCCACCCCGGTTACTCAGCCCAGCACA
1 GAACCTTTTGACGCGAAGAGAGATGACAAACCAAGCACCCCACCCCGGTTACTCAGCCCAGCACA
82242016 TTCCTAATTTTATTATTCCTAAGAACATATC
66 TTCCTAATTTTATTATTCCTAAGAACATATC
* *
82242047 GAACCTTTTAACGCGAAGAGAGATGACAAACCAAGCACCCCACCTCGGTTACTCAGCCCAGCACA
1 GAACCTTTTGACGCGAAGAGAGATGACAAACCAAGCACCCCACCCCGGTTACTCAGCCCAGCACA
82242112 TTCCTAATTTTATTATTCCTAAGAACATATC
66 TTCCTAATTTTATTATTCCTAAGAACATATC
* * * *
82242143 GAACCTTTTGACGGGAAGAGAGATGAC-AGCCAAGCACCTCACCCCGGTTACTCAGCCCAACACA
1 GAACCTTTTGACGCGAAGAGAGATGACAAACCAAGCACCCCACCCCGGTTACTCAGCCCAGCACA
82242207 TTC
66 TTC
82242210 TTAGAAATTA
Statistics
Matches: 155, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
95 36 0.23
96 119 0.77
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.22
Consensus pattern (96 bp):
GAACCTTTTGACGCGAAGAGAGATGACAAACCAAGCACCCCACCCCGGTTACTCAGCCCAGCACA
TTCCTAATTTTATTATTCCTAAGAACATATC
Found at i:82243115 original size:17 final size:16
Alignment explanation
Indices: 82243089--82243140 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 16
82243079 TTAATATCTG
82243089 AAAAT-AATAAATAAA
1 AAAATAAATAAATAAA
*
82243104 ATAATAAGATAAAATAAA
1 AAAATAA-AT-AAATAAA
*
82243122 TAAAATAAAAAAATAAA
1 -AAAATAAATAAATAAA
82243139 AA
1 AA
82243141 TAAAAATTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
15 4 0.13
16 3 0.10
17 9 0.30
18 8 0.27
19 6 0.20
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (16 bp):
AAAATAAATAAATAAA
Found at i:82243119 original size:22 final size:23
Alignment explanation
Indices: 82243094--82243144 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 23
82243084 ATCTGAAAAT
* *
82243094 AATAAATAAAATAATAAGAT-AA
1 AATAAATAAAATAAAAAAATAAA
82243116 AATAAATAAAATAAAAAAATAAA
1 AATAAATAAAATAAAAAAATAAA
82243139 AATAAA
1 AATAAA
82243145 AATTAGGTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 18 0.69
23 8 0.31
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (23 bp):
AATAAATAAAATAAAAAAATAAA
Found at i:82243138 original size:8 final size:8
Alignment explanation
Indices: 82243097--82243140 Score: 52
Period size: 8 Copynumber: 5.1 Consensus size: 8
82243087 TGAAAATAAT
82243097 AAATAAAA
1 AAATAAAA
*
82243105 TAATAAGATA
1 AAATAA-A-A
82243115 AAATAAATA
1 AAATAAA-A
82243124 AAATAAAA
1 AAATAAAA
82243132 AAATAAAA
1 AAATAAAA
82243140 A
1 A
82243141 TAAAAATTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
8 15 0.47
9 11 0.34
10 6 0.19
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (8 bp):
AAATAAAA
Found at i:82259557 original size:10 final size:10
Alignment explanation
Indices: 82259530--82259567 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
82259520 TTAAATACTA
*
82259530 AAAGATAAAT
1 AAAGATAATT
82259540 ACAA-ATAATT
1 A-AAGATAATT
82259550 AAAGATAATT
1 AAAGATAATT
82259560 AAAGATAA
1 AAAGATAA
82259568 ATGAAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.24
Consensus pattern (10 bp):
AAAGATAATT
Found at i:82260139 original size:27 final size:29
Alignment explanation
Indices: 82260109--82260165 Score: 100
Period size: 27 Copynumber: 2.0 Consensus size: 29
82260099 AATCAAATTG
82260109 CTACTCCTACTAACAAGCTAA-AAA-CTC
1 CTACTCCTACTAACAAGCTAACAAATCTC
82260136 CTACTCCTACTAACAAGCTAACAAATCTC
1 CTACTCCTACTAACAAGCTAACAAATCTC
82260165 C
1 C
82260166 CTAGGACTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 21 0.75
28 3 0.11
29 4 0.14
ACGTcount: A:0.39, C:0.35, G:0.04, T:0.23
Consensus pattern (29 bp):
CTACTCCTACTAACAAGCTAACAAATCTC
Found at i:82264996 original size:26 final size:26
Alignment explanation
Indices: 82264965--82265072 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
82264955 TGAAATTCCC
*
82264965 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
82264991 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
82265017 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
82265043 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82265069 ATCA
1 ATCA
82265073 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:82267021 original size:344 final size:343
Alignment explanation
Indices: 82266379--82267068 Score: 1308
Period size: 344 Copynumber: 2.0 Consensus size: 343
82266369 GGATGATAAA
*
82266379 AGAATAAATAAATGAAATTAGTGCTTTGTGTCTTCTCCTCCAAGGACAAAACAAGAAAAAGAAAG
1 AGAATAAATAAATGAAATTAGTGCTTTGTGTCTTCTCCTCCAACGACAAAACAAGAAAAAGAAAG
82266444 AAAGAAAGCTTGCATGTGTTGTTCACCATTTTCGTGAGCTTGTTATAAGAATTATTAAGCTTTCT
66 AAAGAAAGCTTGCATGTGTTGTTCACCATTTTCGTGAGCTTGTTATAAGAATTATTAAGCTTTCT
82266509 TGTTCAATTTTTGTTAAAATTCAATTTATCATAGTAGATGAATATAACCCAATTCTTAAAAGTTG
131 TGTTCAATTTTTGTTAAAATTCAATTTATCATAGTAGATGAATATAACCCAATTCTTAAAAGTTG
82266574 AAATTACTAAGGTGTTGCTAAGTAATTTATTGATGGTTGTTATGAATTTAGAGAGAGAAATGTTG
196 AAATTACTAAGGTGTTGCTAAGTAATTTATTGATGGTTGTTATGAATTTAGAGAGAGAAATGTTG
*
82266639 AAAACTTTAGAGAAAAAATTTATGTTTATTGATAGTTTGAGGTCCCTAAAGTATAATTATAAAAT
261 AAAACTTTAGAGAAAAAATTTATGTTTATTGATAGTTTGAGGTCCCTAAAGTATAACTATAAAAT
* *
82266704 TATATTTATATTCGAATG
326 CATATTTATATTCGAAAG
82266722 AGAATAAATAAATGAAATTAGTGCTTTGTGTCTTCTCCTCCAACGACAAAACAAGAAAAAGAAAG
1 AGAATAAATAAATGAAATTAGTGCTTTGTGTCTTCTCCTCCAACGACAAAACAAGAAAAAGAAAG
82266787 AAAGAAAGCTTGCATGTGTTGTTCACCATTTTCGTGAGCTTGTTATAAGAATTATTAAGCTTTCT
66 AAAGAAAGCTTGCATGTGTTGTTCACCATTTTCGTGAGCTTGTTATAAGAATTATTAAGCTTTCT
* *
82266852 TGTTTAATTTTTGTTAAAATTTCAATTTATCATGGTAGATGAATATAACCCAATTCTTAAAAGTT
131 TGTTCAATTTTTGTTAAAA-TTCAATTTATCATAGTAGATGAATATAACCCAATTCTTAAAAGTT
82266917 GAAATTACTAAGGTGTTGCTAAGTAATTTATTGATGGTTGTTATGAATTTAGAGAGAGAAATGTT
195 GAAATTACTAAGGTGTTGCTAAGTAATTTATTGATGGTTGTTATGAATTTAGAGAGAGAAATGTT
*
82266982 GAAAACTTTAGAGAAAAAATTTATGTTTATTGATAGTTTGAGGTCCCTAGAGTATAACTATAAAA
260 GAAAACTTTAGAGAAAAAATTTATGTTTATTGATAGTTTGAGGTCCCTAAAGTATAACTATAAAA
82267047 TCATATTTATATTCGAAAG
325 TCATATTTATATTCGAAAG
82267066 AGA
1 AGA
82267069 GAGTTGTGAG
Statistics
Matches: 339, Mismatches: 7, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
343 147 0.43
344 192 0.57
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (343 bp):
AGAATAAATAAATGAAATTAGTGCTTTGTGTCTTCTCCTCCAACGACAAAACAAGAAAAAGAAAG
AAAGAAAGCTTGCATGTGTTGTTCACCATTTTCGTGAGCTTGTTATAAGAATTATTAAGCTTTCT
TGTTCAATTTTTGTTAAAATTCAATTTATCATAGTAGATGAATATAACCCAATTCTTAAAAGTTG
AAATTACTAAGGTGTTGCTAAGTAATTTATTGATGGTTGTTATGAATTTAGAGAGAGAAATGTTG
AAAACTTTAGAGAAAAAATTTATGTTTATTGATAGTTTGAGGTCCCTAAAGTATAACTATAAAAT
CATATTTATATTCGAAAG
Found at i:82272739 original size:16 final size:16
Alignment explanation
Indices: 82272728--82272766 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
82272718 TAGAATAGGA
82272728 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
* *
82272744 CTGTAATGTAATAAAG
1 CTGTAATGGAATAGAG
*
82272760 TTGTAAT
1 CTGTAAT
82272767 CAATAATTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.33
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:82273039 original size:8 final size:10
Alignment explanation
Indices: 82273015--82273043 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
82273005 TTTTTTATTT
82273015 TTATATTAAA
1 TTATATTAAA
82273025 TTATATTAAA
1 TTATATTAAA
82273035 TTAT-TTAAA
1 TTATATTAAA
82273044 ATATTTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 5 0.26
10 14 0.74
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
TTATATTAAA
Found at i:82298162 original size:28 final size:29
Alignment explanation
Indices: 82298110--82298164 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
82298100 AGATTTTTAA
82298110 AAAAATTAAGAAAATAGGCTAAATTTTTT
1 AAAAATTAAGAAAATAGGCTAAATTTTTT
* * *
82298139 AAAATTTATGAAAATGGGCT-AATTTT
1 AAAAATTAAGAAAATAGGCTAAATTTT
82298165 AGTAAAACGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 6 0.26
29 17 0.74
ACGTcount: A:0.47, C:0.04, G:0.13, T:0.36
Consensus pattern (29 bp):
AAAAATTAAGAAAATAGGCTAAATTTTTT
Found at i:82298170 original size:29 final size:29
Alignment explanation
Indices: 82298110--82298171 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
82298100 AGATTTTTAA
*
82298110 AAAAATTAAGAAAATAGGCTAAATTTTTT
1 AAAAATTAAGAAAATAGGCTAAATTTTGT
* * *
82298139 AAAATTTATGAAAATGGGCT-AATTTTAGT
1 AAAAATTAAGAAAATAGGCTAAATTTT-GT
82298168 AAAA
1 AAAA
82298172 CGTTTTCCGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 6 0.21
29 22 0.79
ACGTcount: A:0.50, C:0.03, G:0.13, T:0.34
Consensus pattern (29 bp):
AAAAATTAAGAAAATAGGCTAAATTTTGT
Found at i:82304823 original size:13 final size:13
Alignment explanation
Indices: 82304805--82304831 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82304795 CGCAGTGCCT
82304805 ATAAACTATTACA
1 ATAAACTATTACA
82304818 ATAAACTATTACA
1 ATAAACTATTACA
82304831 A
1 A
82304832 GCTTTGGAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (13 bp):
ATAAACTATTACA
Found at i:82306179 original size:35 final size:38
Alignment explanation
Indices: 82306140--82306214 Score: 93
Period size: 38 Copynumber: 2.1 Consensus size: 38
82306130 ATAATAAAAA
* *
82306140 TAATATAT-GTAGAAA-AT-TTTAATATTATAATTTAT
1 TAATATATAGTAGAAATATATTTAATAGTATAATATAT
* *
82306175 TAATATATATTATAAATATATTTAATAGTATAATATAT
1 TAATATATAGTAGAAATATATTTAATAGTATAATATAT
82306213 TA
1 TA
82306215 TTTATAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
35 8 0.24
36 5 0.15
37 2 0.06
38 18 0.55
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (38 bp):
TAATATATAGTAGAAATATATTTAATAGTATAATATAT
Found at i:82306218 original size:20 final size:20
Alignment explanation
Indices: 82306157--82306218 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
82306147 TGTAGAAAAT
*
82306157 TTTAATATTATAATTTATTA
1 TTTAATATTATAATATATTA
*
82306177 -ATATATATTATAA-ATA-TA
1 TTTA-ATATTATAATATATTA
*
82306195 TTTAATAGTATAATATATTA
1 TTTAATATTATAATATATTA
82306215 TTTA
1 TTTA
82306219 TAAAAATATG
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
18 10 0.29
19 9 0.26
20 15 0.44
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (20 bp):
TTTAATATTATAATATATTA
Found at i:82308640 original size:25 final size:25
Alignment explanation
Indices: 82308611--82308661 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
82308601 TGCCCTGAAA
82308611 GAAATTTGGGATATTGTAAAATCTT
1 GAAATTTGGGATATTGTAAAATCTT
82308636 GAAATTTGGGATATTGTAAAATCTT
1 GAAATTTGGGATATTGTAAAATCTT
82308661 G
1 G
82308662 TCTTAGCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.35, C:0.04, G:0.22, T:0.39
Consensus pattern (25 bp):
GAAATTTGGGATATTGTAAAATCTT
Found at i:82315136 original size:24 final size:25
Alignment explanation
Indices: 82315087--82315136 Score: 59
Period size: 24 Copynumber: 2.0 Consensus size: 25
82315077 ACCCTTATCA
* *
82315087 TCTCTTCACTTCTCTCTCATTTTTC
1 TCTCTTCACTTCCCTCTCATTGTTC
82315112 TCTCTTCA-TTCCCT-TCCATTGTTC
1 TCTCTTCACTTCCCTCT-CATTGTTC
82315136 T
1 T
82315137 TCATTTTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 1 0.05
24 13 0.59
25 8 0.36
ACGTcount: A:0.08, C:0.36, G:0.02, T:0.54
Consensus pattern (25 bp):
TCTCTTCACTTCCCTCTCATTGTTC
Found at i:82318842 original size:15 final size:15
Alignment explanation
Indices: 82318822--82318851 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
82318812 ATCAGACCCT
82318822 CCAAATGATAAAGAG
1 CCAAATGATAAAGAG
*
82318837 CCAAATGATGAAGAG
1 CCAAATGATAAAGAG
82318852 GAGGATGAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.23, T:0.13
Consensus pattern (15 bp):
CCAAATGATAAAGAG
Found at i:82322941 original size:25 final size:24
Alignment explanation
Indices: 82322902--82322958 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
82322892 TTTTCTCCTA
* *
82322902 AATTTTTATTTTATTTAATTATTT
1 AATTTTTAATTTATTGAATTATTT
82322926 AATTTTCTAATTTATTGAATTA-TT
1 AATTTT-TAATTTATTGAATTATTT
82322950 AATATTTTA
1 AAT-TTTTA
82322959 TACTAATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 13 0.45
25 16 0.55
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (24 bp):
AATTTTTAATTTATTGAATTATTT
Found at i:82324528 original size:40 final size:40
Alignment explanation
Indices: 82324437--82324605 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
82324427 TCCTCGTTCA
* * * * *
82324437 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
82324476 AATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
82324516 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
82324556 AATGCCTTCGGGACTTAACCC-AATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
82324595 AAGGCCTTCGG
1 AATGCCTTCGG
82324606 ATCTTAGTCC
Statistics
Matches: 114, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 56 0.49
40 58 0.51
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:82324582 original size:79 final size:79
Alignment explanation
Indices: 82324435--82324605 Score: 218
Period size: 79 Copynumber: 2.2 Consensus size: 79
82324425 GCTCCTCGTT
* * * *
82324435 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACGTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACAATGCCTTCGGGACGTAACCCGAA
82324500 TTTAACAACTCGCA
66 TTTAACAACTCGCA
* * * *
82324514 CGAATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACGAATGCCTTCGGGACTTAACCC-A
1 CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACAC-AATGCCTTCGGGACGTAACCCGA
** *
82324578 ATTTAGTATCTCGCA
65 ATTTAACAACTCGCA
*
82324593 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
82324606 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
79 58 0.74
80 20 0.26
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACAATGCCTTCGGGACGTAACCCGAA
TTTAACAACTCGCA
Found at i:82346170 original size:43 final size:43
Alignment explanation
Indices: 82346122--82346233 Score: 163
Period size: 43 Copynumber: 2.6 Consensus size: 43
82346112 AGATTACATA
* * *
82346122 TAAGACCATGTCTGGGACATTGTCATTGTAT-TGTGATTGCGTG
1 TAAGACTATGTCTGGGACATTGGCATTGT-TGTATGATTGCGTG
*
82346165 TAAGACTATGTCTGGGACATTGGCATTGTTGTATGATTTCGTG
1 TAAGACTATGTCTGGGACATTGGCATTGTTGTATGATTGCGTG
*
82346208 TAAGACTATGTCTAGGACATTGGCAT
1 TAAGACTATGTCTGGGACATTGGCAT
82346234 CGATATGAGA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
42 1 0.02
43 62 0.98
ACGTcount: A:0.23, C:0.13, G:0.27, T:0.37
Consensus pattern (43 bp):
TAAGACTATGTCTGGGACATTGGCATTGTTGTATGATTGCGTG
Found at i:82346253 original size:43 final size:42
Alignment explanation
Indices: 82346109--82346283 Score: 158
Period size: 43 Copynumber: 4.1 Consensus size: 42
82346099 GATTGCTGAG
* * *
82346109 ATGAGATTACATATAAGACCATGTCTGGGACATTGTCATTGT
1 ATGAGATTACATGTAAGACTATGTCTGGGACATTGGCATTGT
* * *
82346151 ATTGTGATTGCGTGTAAGACTATGTCTGGGACATTGGCATTGT
1 A-TGAGATTACATGTAAGACTATGTCTGGGACATTGGCATTGT
* * * *
82346194 -TGTATGATTTCGTGTAAGACTATGTCTAGGACATTGGCATCGAT
1 ATG-A-GATTACATGTAAGACTATGTCTGGGACATTGGCATTG-T
* * * *
82346238 ATGAGATAACATGTAAGA-TCATATCTGGGATA-CGGCATTGT
1 ATGAGATTACATGTAAGACT-ATGTCTGGGACATTGGCATTGT
82346279 ATGAG
1 ATGAG
82346284 CTTTATGTGA
Statistics
Matches: 109, Mismatches: 18, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
41 8 0.07
42 8 0.07
43 89 0.82
44 2 0.02
45 2 0.02
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.34
Consensus pattern (42 bp):
ATGAGATTACATGTAAGACTATGTCTGGGACATTGGCATTGT
Found at i:82355705 original size:18 final size:18
Alignment explanation
Indices: 82355671--82355704 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
82355661 GGTCATTCAT
82355671 TTTATCTTTTTAATTTTC
1 TTTATCTTTTTAATTTTC
*
82355689 TTTAT-TTTTTCATTTT
1 TTTATCTTTTTAATTTT
82355705 TAAGAATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTATCTTTTTAATTTTC
Found at i:82356049 original size:24 final size:21
Alignment explanation
Indices: 82355999--82356049 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 21
82355989 AAAACCAATG
*
82355999 TTTTATAGGAAATTATTTTGT
1 TTTTATAGGAAATTATTTTAT
82356020 TATTTATAGGAAATTACATTTTAT
1 T-TTTATAGGAAATT--ATTTTAT
82356044 CTTTTA
1 -TTTTA
82356050 ATTTCCTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 1 0.04
22 13 0.52
24 10 0.40
25 1 0.04
ACGTcount: A:0.31, C:0.04, G:0.10, T:0.55
Consensus pattern (21 bp):
TTTTATAGGAAATTATTTTAT
Found at i:82363406 original size:39 final size:39
Alignment explanation
Indices: 82363352--82363427 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
82363342 ATGATTGCCT
*
82363352 TGTTCTCACAGTACAACTTGATAGGCATGGTTATAGACC
1 TGTTCTCACAGTACAACTTGATAGGCATGGTCATAGACC
*
82363391 TGTTCTCATAGTACAACTTGATAGGCATGGTCATAGA
1 TGTTCTCACAGTACAACTTGATAGGCATGGTCATAGA
82363428 TCTTTTTAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (39 bp):
TGTTCTCACAGTACAACTTGATAGGCATGGTCATAGACC
Found at i:82363887 original size:15 final size:15
Alignment explanation
Indices: 82363863--82363892 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
82363853 CTAGAATGTG
82363863 AATAAAATTTATCTA
1 AATAAAATTTATCTA
*
82363878 AATAAGATTTATCTA
1 AATAAAATTTATCTA
82363893 CCTAAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (15 bp):
AATAAAATTTATCTA
Found at i:82368524 original size:19 final size:18
Alignment explanation
Indices: 82368502--82368541 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
82368492 TGAATAAAAC
82368502 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
82368521 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
82368539 TTA
1 TTA
82368542 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:82377862 original size:3 final size:3
Alignment explanation
Indices: 82377854--82377883 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
82377844 TTTAATTTAG
82377854 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
82377884 GTAATATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:82378809 original size:12 final size:12
Alignment explanation
Indices: 82378787--82378819 Score: 57
Period size: 12 Copynumber: 2.7 Consensus size: 12
82378777 GAGAAAGAAA
82378787 GAAAGGAAAAAGG
1 GAAA-GAAAAAGG
82378800 GAAAGAAAAAGG
1 GAAAGAAAAAGG
82378812 GAAAGAAA
1 GAAAGAAA
82378820 GAAATGGGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (12 bp):
GAAAGAAAAAGG
Found at i:82379152 original size:15 final size:14
Alignment explanation
Indices: 82379132--82379177 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
82379122 TGTATACTAA
82379132 TTATAATAATAATAT
1 TTATAATAAT-ATAT
82379147 TTATAATAATATAT
1 TTATAATAATATAT
* *
82379161 TTTTATTAA-ATAT
1 TTATAATAATATAT
82379174 TTAT
1 TTAT
82379178 TCATTTGTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 7 0.25
14 11 0.39
15 10 0.36
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TTATAATAATATAT
Found at i:82389246 original size:19 final size:19
Alignment explanation
Indices: 82389200--82389247 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
82389190 GTATATATTT
82389200 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
82389218 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
82389237 TAAGTTTTATT
1 TAAATTTTATT
82389248 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:82393877 original size:15 final size:15
Alignment explanation
Indices: 82393857--82393886 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
82393847 TTTATTTAGG
82393857 TAGATAAATCTTATT
1 TAGATAAATCTTATT
*
82393872 TAGATAAATTTTATT
1 TAGATAAATCTTATT
82393887 CACATTCTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.50
Consensus pattern (15 bp):
TAGATAAATCTTATT
Found at i:82394367 original size:39 final size:39
Alignment explanation
Indices: 82394318--82394393 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
82394308 ACTAAAAAGA
*
82394318 TCTATGACCATGCCTATCAAGTTGTACTATGAGAACAGG
1 TCTATAACCATGCCTATCAAGTTGTACTATGAGAACAGG
*
82394357 TCTATAACCATGCCTATCAAGTTGTACTGTGAGAACA
1 TCTATAACCATGCCTATCAAGTTGTACTATGAGAACA
82394394 AGGCAATCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (39 bp):
TCTATAACCATGCCTATCAAGTTGTACTATGAGAACAGG
Found at i:82401765 original size:17 final size:18
Alignment explanation
Indices: 82401739--82401772 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
82401729 TTGATTCTTA
82401739 AAAATGAAAAA-ATAAAG
1 AAAATGAAAAAGATAAAG
*
82401756 AAAATTAAAAAGATAAA
1 AAAATGAAAAAGATAAA
82401773 ATGAATGACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (18 bp):
AAAATGAAAAAGATAAAG
Found at i:82415970 original size:3 final size:3
Alignment explanation
Indices: 82415962--82415991 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
82415952 TTTAATTTAG
82415962 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
82415992 GTAATATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:82416919 original size:12 final size:12
Alignment explanation
Indices: 82416897--82416929 Score: 57
Period size: 12 Copynumber: 2.7 Consensus size: 12
82416887 GAGAAAGAAA
82416897 GAAAGGAAAAAGG
1 GAAA-GAAAAAGG
82416910 GAAAGAAAAAGG
1 GAAAGAAAAAGG
82416922 GAAAGAAA
1 GAAAGAAA
82416930 GAAATGGGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (12 bp):
GAAAGAAAAAGG
Done.